AlfalfaGEDB | Msa0124460

M. sativa cultivar zhongmu-4 / Msa0124460

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124460	XP_003590649.1	97.257	401	11	0	1	401	1	401	0.0	801

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124460	sp\|Q9LYA9\|CP41A_ARATH	81.977	344	62	0	56	399	61	404	0.0	594

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124460	G7IED1	97.257	401	11	0	1	401	1	401	0.0	801

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0124460	0.848867	4.661502e-60	-8.615850e-47
Msa0000610	Msa0124460	0.828876	7.045316e-55	-8.615850e-47
Msa0000800	Msa0124460	-0.830645	2.612935e-55	-8.615850e-47
Msa0001040	Msa0124460	0.859269	4.648011e-63	-8.615850e-47
Msa0001420	Msa0124460	0.823892	1.084605e-53	-8.615850e-47
Msa0001510	Msa0124460	0.919680	3.323922e-87	-8.615850e-47
Msa0001540	Msa0124460	0.851427	8.937685e-61	-8.615850e-47
Msa0001550	Msa0124460	0.830549	2.759480e-55	-8.615850e-47
Msa0002060	Msa0124460	0.825102	5.628248e-54	-8.615850e-47
Msa0002110	Msa0124460	0.898425	5.373266e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124460	MtrunA17_Chr1g0185571	97.257	401	11	0	1	401	1	401	0.0	801
Msa0124460	MtrunA17_Chr7g0271591	35.733	375	209	10	42	392	5	371	7.10e-61	201
Msa0124460	MtrunA17_Chr1g0211441	66.154	65	5	1	277	341	1	48	2.26e-21	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124460	AT3G63140.1	81.977	344	62	0	56	399	61	404	0.0	594
Msa0124460	AT1G09340.1	35.244	349	212	6	51	392	30	371	1.79e-59	198
Msa0124460	AT1G09340.2	35.530	349	210	7	52	392	31	372	1.33e-58	196

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Find 101 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTTAGAAGCTAAAGA+AGG	0.497940	1_3:+52253687	None:intergenic
AAACTATGTGCTCAAGCTGC+AGG	0.509740	1_3:-52252252	Msa0124460:CDS
AAAGCAGATGCTGGTCATGT+TGG	0.578448	1_3:-52252686	Msa0124460:CDS
AAAGTAGAAGAATGTGAAAG+TGG	0.543210	1_3:+52253777	None:intergenic
AACGTTTAGAAGCTAAAGAA+GGG	0.594765	1_3:+52253688	None:intergenic
AAGTAGAAGAATGTGAAAGT+GGG	0.654024	1_3:+52253778	None:intergenic
AAGTGCTGCAGAGAAGAAGA+AGG	0.579004	1_3:-52253634	Msa0124460:CDS
AAGTGGGAGAAGATTGGAAG+AGG	0.519156	1_3:+52253794	None:intergenic
ACAACAAAGATTGTGAGGAG+TGG	0.655123	1_3:-52252589	Msa0124460:CDS
ACAACACTCCCTACATCTGC+AGG	0.549124	1_3:+52253266	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAGAAGAATGTGAAAGT+GGG	+	chr1_3:52251603-52251622	None:intergenic	30.0%
AAAGTAGAAGAATGTGAAAG+TGG	+	chr1_3:52251604-52251623	None:intergenic	30.0%
AACGTTTAGAAGCTAAAGAA+GGG	+	chr1_3:52251693-52251712	None:intergenic	30.0%
AAACGTTTAGAAGCTAAAGA+AGG	+	chr1_3:52251694-52251713	None:intergenic	30.0%
CAATCACCATTATTACATCA+AGG	-	chr1_3:52252017-52252036	Msa0124460:intron	30.0%
CATAATGCACAATGTTAACA+GGG	+	chr1_3:52253155-52253174	None:intergenic	30.0%
TCATAATGCACAATGTTAAC+AGG	+	chr1_3:52253156-52253175	None:intergenic	30.0%
CATTATGATCCAAAAGCTAT+TGG	-	chr1_3:52253168-52253187	Msa0124460:intron	30.0%
TGTAATGCAGACTAGAATAT+AGG	+	chr1_3:52253245-52253264	None:intergenic	30.0%
GCTAGATGATAAGATATTAG+AGG	-	chr1_3:52253691-52253710	Msa0124460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	52251527	52253873	52251527	ID=Msa0124460;Name=Msa0124460
chr1_3	mRNA	52251527	52253873	52251527	ID=Msa0124460-mRNA-1;Parent=Msa0124460;Name=Msa0124460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=11\|1\|1\|1\|1\|1\|6\|134\|401
chr1_3	exon	52251527	52251843	52251527	ID=Msa0124460-mRNA-1:exon:16014;Parent=Msa0124460-mRNA-1
chr1_3	exon	52252173	52252450	52252173	ID=Msa0124460-mRNA-1:exon:16013;Parent=Msa0124460-mRNA-1
chr1_3	exon	52252579	52252717	52252579	ID=Msa0124460-mRNA-1:exon:16012;Parent=Msa0124460-mRNA-1
chr1_3	exon	52252805	52252907	52252805	ID=Msa0124460-mRNA-1:exon:16011;Parent=Msa0124460-mRNA-1
chr1_3	exon	52253206	52253327	52253206	ID=Msa0124460-mRNA-1:exon:16010;Parent=Msa0124460-mRNA-1
chr1_3	exon	52253482	52253873	52253482	ID=Msa0124460-mRNA-1:exon:16009;Parent=Msa0124460-mRNA-1
chr1_3	five_prime_UTR	52253863	52253873	52253863	ID=Msa0124460-mRNA-1:five_prime_utr;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52253482	52253862	52253482	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52253206	52253327	52253206	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52252805	52252907	52252805	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52252579	52252717	52252579	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52252173	52252450	52252173	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	CDS	52251661	52251843	52251661	ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3	three_prime_UTR	52251527	52251660	52251527	ID=Msa0124460-mRNA-1:three_prime_utr;Parent=Msa0124460-mRNA-1

Gene Sequence

>Msa0124460

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAGCTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATAATAAATACCAACAGCGGTGGACATGCCGTGATTGGCTTCTACTTTGCAAAAGAGCTACTTGGTGCTGGCCACTCTGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGTGAGGAGTGGTTCTTTGACAGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTTCCTTTCCGTAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>Msa0124460

MAMLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLASKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*