AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124460 MtrunA17_Chr1g0185571 97.257 401 11 0 1 401 1 401 0.0 801
Msa0124460 MtrunA17_Chr7g0271591 35.733 375 209 10 42 392 5 371 7.10e-61 201
Msa0124460 MtrunA17_Chr1g0211441 66.154 65 5 1 277 341 1 48 2.26e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124460 AT3G63140.1 81.977 344 62 0 56 399 61 404 0.0 594
Msa0124460 AT1G09340.1 35.244 349 212 6 51 392 30 371 1.79e-59 198
Msa0124460 AT1G09340.2 35.530 349 210 7 52 392 31 372 1.33e-58 196

Find 101 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1_3:+52252201 None:intergenic
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1_3:-52251804 Msa0124460:CDS
AGCCTTTCCTTTCCGTAATA+TGG 0.258949 1_3:-52252172 Msa0124460:intron
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1_3:-52253237 Msa0124460:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1_3:-52252637 Msa0124460:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1_3:-52252282 Msa0124460:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1_3:+52253477 None:intergenic
ACTCCATCCCAATTTACTTT+TGG 0.315805 1_3:+52251796 None:intergenic
TGCCATTTGTAGGGATTGTT+CGG 0.321985 1_3:-52252440 Msa0124460:intron
TCATAATGCACAATGTTAAC+AGG 0.325320 1_3:+52252225 None:intergenic
CATTATGATCCAAAAGCTAT+TGG 0.327599 1_3:-52252210 Msa0124460:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1_3:-52252892 Msa0124460:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1_3:-52253295 Msa0124460:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1_3:+52251701 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.376564 1_3:-52252417 Msa0124460:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1_3:-52251737 Msa0124460:CDS
GCCATTTGTAGGGATTGTTC+GGG 0.401187 1_3:-52252439 Msa0124460:intron
GCTAGATGATAAGATATTAG+AGG 0.403011 1_3:-52251687 Msa0124460:CDS
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1_3:-52252411 Msa0124460:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1_3:-52252620 Msa0124460:CDS
ATGCTATGATTTGCAGCATC+CGG 0.409637 1_3:+52252321 None:intergenic
AGATTGATAGAGAGGAGGAT+TGG 0.413296 1_3:+52253730 None:intergenic
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1_3:+52253701 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1_3:+52253722 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1_3:+52252868 None:intergenic
TACTTTGCAAAAGAGCTACT+TGG 0.437164 1_3:-52253564 Msa0124460:CDS
TTCTTGTTCATCAGTAGTGC+TGG 0.442792 1_3:-52252845 Msa0124460:CDS
CCACAGTATATGATAGGGTC+TGG 0.453744 1_3:-52252614 Msa0124460:CDS
ATGTGAAAGTGGGAGAAGAT+TGG 0.454331 1_3:+52253788 None:intergenic
AGCGGTGGACATGCCGTGAT+TGG 0.454893 1_3:-52253591 Msa0124460:CDS
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1_3:-52252891 Msa0124460:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1_3:-52253294 Msa0124460:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1_3:+52251664 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1_3:-52251803 Msa0124460:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1_3:-52253263 Msa0124460:CDS
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1_3:+52253707 None:intergenic
TATCTGTAACTACCATATTA+CGG 0.470842 1_3:+52252160 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1_3:-52251736 Msa0124460:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1_3:+52253524 None:intergenic
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1_3:-52253311 Msa0124460:intron
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1_3:-52253258 Msa0124460:CDS
TGGATATGAATGGATTAGAC+AGG 0.488013 1_3:+52251647 None:intergenic
CTTGTTACATGATTTAAATG+AGG 0.488668 1_3:-52251590 Msa0124460:three_prime_UTR
TGCTATGATTTGCAGCATCC+GGG 0.492238 1_3:+52252322 None:intergenic
TTTACATACCCCTTCAACAT+GGG 0.493986 1_3:+52252796 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1_3:+52251769 None:intergenic
AAACGTTTAGAAGCTAAAGA+AGG 0.497940 1_3:+52253687 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1_3:-52252806 Msa0124460:CDS
GCAAAAGAGCTACTTGGTGC+TGG 0.499775 1_3:-52253558 Msa0124460:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1_3:-52252878 Msa0124460:CDS
AAACTATGTGCTCAAGCTGC+AGG 0.509740 1_3:-52252252 Msa0124460:CDS
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1_3:-52253275 Msa0124460:CDS
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1_3:-52253259 Msa0124460:CDS
AAGTGGGAGAAGATTGGAAG+AGG 0.519156 1_3:+52253794 None:intergenic
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1_3:-52252340 Msa0124460:CDS
TGAATGGATTAGACAGGCAC+TGG 0.522079 1_3:+52251653 None:intergenic
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1_3:-52253260 Msa0124460:CDS
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1_3:+52253725 None:intergenic
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1_3:-52251753 Msa0124460:CDS
AAAGTAGAAGAATGTGAAAG+TGG 0.543210 1_3:+52253777 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.543714 1_3:+52253824 None:intergenic
CACGGCATGTCCACCGCTGT+TGG 0.546475 1_3:+52253596 None:intergenic
TCTGTCACCATTCTCACTGT+TGG 0.546638 1_3:-52253531 Msa0124460:CDS
ACAACACTCCCTACATCTGC+AGG 0.549124 1_3:+52253266 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1_3:-52252805 Msa0124460:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1_3:-52252695 Msa0124460:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1_3:+52253836 None:intergenic
GGAATGAAGAAGAGAAAGAA+AGG 0.551829 1_3:+52253751 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1_3:-52253274 Msa0124460:CDS
GTTGCAGAGAAGAGCAAGGT+AGG 0.560127 1_3:+52253816 None:intergenic
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1_3:-52253308 Msa0124460:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1_3:-52253213 Msa0124460:CDS
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1_3:-52252686 Msa0124460:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1_3:-52253634 Msa0124460:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1_3:+52252399 None:intergenic
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1_3:+52253480 None:intergenic
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1_3:-52251799 Msa0124460:CDS
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1_3:-52253243 Msa0124460:CDS
AACGTTTAGAAGCTAAAGAA+GGG 0.594765 1_3:+52253688 None:intergenic
TTACATACCCCTTCAACATG+GGG 0.600415 1_3:+52252797 None:intergenic
TGCAAAGTAGAAGCCAATCA+CGG 0.603066 1_3:+52253578 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1_3:+52252884 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1_3:-52252619 Msa0124460:CDS
TACCATATTACGGAAAGGAA+AGG 0.618636 1_3:+52252170 None:intergenic
GTAACTACCATATTACGGAA+AGG 0.619320 1_3:+52252165 None:intergenic
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1_3:+52252411 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1_3:+52252800 None:intergenic
ATAATAAATACCAACAGCGG+TGG 0.623645 1_3:-52253606 Msa0124460:CDS
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1_3:-52252804 Msa0124460:intron
TGGAAACAACAAAGATTGTG+AGG 0.640779 1_3:-52252594 Msa0124460:CDS
CATAATGCACAATGTTAACA+GGG 0.646540 1_3:+52252226 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1_3:+52252280 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1_3:-52251760 Msa0124460:CDS
AGAGGTTGCAGAGAAGAGCA+AGG 0.651792 1_3:+52253812 None:intergenic
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1_3:-52253205 Msa0124460:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1_3:-52253293 Msa0124460:CDS
AAGTAGAAGAATGTGAAAGT+GGG 0.654024 1_3:+52253778 None:intergenic
ACAACAAAGATTGTGAGGAG+TGG 0.655123 1_3:-52252589 Msa0124460:CDS
CAGTGAGAATGGTGACAGAG+TGG 0.686600 1_3:+52253535 None:intergenic
CTAATAATAAATACCAACAG+CGG 0.689956 1_3:-52253609 Msa0124460:CDS
CCAGACCCTATCATATACTG+TGG 0.716866 1_3:+52252614 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACCTTGATGTAATAA+TGG + chr1_3:52252026-52252045 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1_3:52252051-52252070 Msa0124460:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_3:52252647-52252666 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_3:52252870-52252889 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_3:52253744-52253763 None:intergenic 20.0%
!! ATTAAACCTTGATGTAATAA+TGG + chr1_3:52252026-52252045 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1_3:52252051-52252070 Msa0124460:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_3:52252647-52252666 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_3:52252870-52252889 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_3:52253744-52253763 None:intergenic 20.0%
! CTAATAATAAATACCAACAG+CGG - chr1_3:52251769-52251788 Msa0124460:CDS 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_3:52251904-52251923 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_3:52251955-52251974 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_3:52252472-52252491 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_3:52252471-52252490 Msa0124460:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_3:52252633-52252652 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_3:52252655-52252674 Msa0124460:CDS 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_3:52252862-52252881 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_3:52252928-52252947 Msa0124460:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_3:52252929-52252948 Msa0124460:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_3:52253221-52253240 None:intergenic 25.0%
!! TGTGTGATCATTTTACATTT+TGG + chr1_3:52253754-52253773 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_3:52253788-52253807 Msa0124460:CDS 25.0%
! CTAATAATAAATACCAACAG+CGG - chr1_3:52251769-52251788 Msa0124460:CDS 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_3:52251904-52251923 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_3:52251955-52251974 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_3:52252472-52252491 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_3:52252471-52252490 Msa0124460:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_3:52252633-52252652 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_3:52252655-52252674 Msa0124460:CDS 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_3:52252862-52252881 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_3:52252928-52252947 Msa0124460:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_3:52252929-52252948 Msa0124460:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_3:52253221-52253240 None:intergenic 25.0%
!! TGTGTGATCATTTTACATTT+TGG + chr1_3:52253754-52253773 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_3:52253788-52253807 Msa0124460:CDS 25.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_3:52251603-52251622 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_3:52251604-52251623 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_3:52251693-52251712 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_3:52251694-52251713 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_3:52252017-52252036 Msa0124460:intron 30.0%
!!! GTTTTAAGATATAAGAGCAG+CGG - chr1_3:52252270-52252289 Msa0124460:CDS 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_3:52252729-52252748 Msa0124460:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_3:52252730-52252749 Msa0124460:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_3:52253155-52253174 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_3:52253156-52253175 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_3:52253168-52253187 Msa0124460:intron 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_3:52253245-52253264 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_3:52253310-52253329 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_3:52253641-52253660 Msa0124460:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_3:52253642-52253661 Msa0124460:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_3:52253680-52253699 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_3:52253691-52253710 Msa0124460:CDS 30.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_3:52251603-52251622 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_3:52251604-52251623 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_3:52251693-52251712 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_3:52251694-52251713 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_3:52252017-52252036 Msa0124460:intron 30.0%
!!! GTTTTAAGATATAAGAGCAG+CGG - chr1_3:52252270-52252289 Msa0124460:CDS 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_3:52252729-52252748 Msa0124460:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_3:52252730-52252749 Msa0124460:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_3:52253155-52253174 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_3:52253156-52253175 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_3:52253168-52253187 Msa0124460:intron 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_3:52253245-52253264 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_3:52253310-52253329 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_3:52253641-52253660 Msa0124460:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_3:52253642-52253661 Msa0124460:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_3:52253680-52253699 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_3:52253691-52253710 Msa0124460:CDS 30.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_3:52251630-52251649 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_3:52251680-52251699 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_3:52251772-52251791 Msa0124460:CDS 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_3:52251814-52251833 Msa0124460:CDS 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_3:52251901-52251920 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_3:52252253-52252272 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_3:52252331-52252350 Msa0124460:CDS 35.0%
TTGTTCTAATATATGCAGCC+AGG - chr1_3:52252425-52252444 Msa0124460:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_3:52252446-52252465 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_3:52252585-52252604 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_3:52252586-52252605 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_3:52252612-52252631 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_3:52252784-52252803 Msa0124460:intron 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_3:52253180-52253199 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_3:52253211-52253230 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_3:52253216-52253235 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_3:52253315-52253334 Msa0124460:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_3:52253324-52253343 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_3:52253443-52253462 Msa0124460:intron 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_3:52253444-52253463 Msa0124460:intron 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_3:52253575-52253594 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_3:52253574-52253593 Msa0124460:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_3:52253575-52253594 Msa0124460:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_3:52253585-52253604 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_3:52253618-52253637 Msa0124460:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_3:52253734-52253753 None:intergenic 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_3:52251630-52251649 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_3:52251680-52251699 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_3:52251772-52251791 Msa0124460:CDS 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_3:52251814-52251833 Msa0124460:CDS 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_3:52251901-52251920 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_3:52252253-52252272 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_3:52252331-52252350 Msa0124460:CDS 35.0%
TTGTTCTAATATATGCAGCC+AGG - chr1_3:52252425-52252444 Msa0124460:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_3:52252446-52252465 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_3:52252585-52252604 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_3:52252586-52252605 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_3:52252612-52252631 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_3:52252784-52252803 Msa0124460:intron 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_3:52253180-52253199 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_3:52253211-52253230 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_3:52253216-52253235 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_3:52253315-52253334 Msa0124460:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_3:52253324-52253343 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_3:52253443-52253462 Msa0124460:intron 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_3:52253444-52253463 Msa0124460:intron 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_3:52253575-52253594 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_3:52253574-52253593 Msa0124460:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_3:52253575-52253594 Msa0124460:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_3:52253585-52253604 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_3:52253618-52253637 Msa0124460:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_3:52253734-52253753 None:intergenic 35.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_3:52251593-52251612 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_3:52251651-52251670 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_3:52251803-52251822 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_3:52251857-52251876 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_3:52252067-52252086 Msa0124460:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_3:52252141-52252160 Msa0124460:intron 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_3:52252151-52252170 Msa0124460:intron 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_3:52252248-52252267 Msa0124460:CDS 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_3:52252475-52252494 Msa0124460:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_3:52252533-52252552 Msa0124460:intron 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_3:52252584-52252603 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_3:52252661-52252680 Msa0124460:CDS 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_3:52252758-52252777 Msa0124460:intron 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_3:52252759-52252778 Msa0124460:intron 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_3:52252789-52252808 Msa0124460:intron 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_3:52252807-52252826 Msa0124460:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_3:52252808-52252827 Msa0124460:CDS 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1_3:52252938-52252957 Msa0124460:intron 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_3:52253060-52253079 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_3:52253101-52253120 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_3:52253206-52253225 Msa0124460:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_3:52253579-52253598 Msa0124460:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_3:52253619-52253638 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_3:52253623-52253642 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_3:52253625-52253644 Msa0124460:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_3:52253631-52253650 None:intergenic 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_3:52251593-52251612 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_3:52251651-52251670 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_3:52251803-52251822 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_3:52251857-52251876 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_3:52252067-52252086 Msa0124460:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_3:52252141-52252160 Msa0124460:intron 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_3:52252151-52252170 Msa0124460:intron 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_3:52252248-52252267 Msa0124460:CDS 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_3:52252475-52252494 Msa0124460:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_3:52252533-52252552 Msa0124460:intron 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_3:52252584-52252603 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_3:52252661-52252680 Msa0124460:CDS 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_3:52252758-52252777 Msa0124460:intron 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_3:52252759-52252778 Msa0124460:intron 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_3:52252789-52252808 Msa0124460:intron 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_3:52252807-52252826 Msa0124460:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_3:52252808-52252827 Msa0124460:CDS 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1_3:52252938-52252957 Msa0124460:intron 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_3:52253060-52253079 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_3:52253101-52253120 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_3:52253206-52253225 Msa0124460:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_3:52253579-52253598 Msa0124460:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_3:52253619-52253638 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_3:52253623-52253642 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_3:52253625-52253644 Msa0124460:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_3:52253631-52253650 None:intergenic 40.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_3:52251530-52251549 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_3:52251587-52251606 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_3:52251656-52251675 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_3:52251659-52251678 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_3:52251674-52251693 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_3:52251744-52251763 Msa0124460:CDS 45.0%
TCTGTCACCATTCTCACTGT+TGG - chr1_3:52251847-52251866 Msa0124460:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_3:52252119-52252138 Msa0124460:intron 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_3:52252156-52252175 Msa0124460:intron 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_3:52252165-52252184 Msa0124460:intron 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_3:52252487-52252506 Msa0124460:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_3:52252573-52252592 Msa0124460:intron 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_3:52252692-52252711 Msa0124460:CDS 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_3:52252741-52252760 Msa0124460:intron 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_3:52252767-52252786 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_3:52252764-52252783 Msa0124460:intron 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1_3:52252939-52252958 Msa0124460:intron 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1_3:52252943-52252962 None:intergenic 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_3:52253059-52253078 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_3:52253126-52253145 Msa0124460:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_3:52253358-52253377 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_3:52253459-52253478 Msa0124460:intron 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_3:52253612-52253631 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_3:52253728-52253747 None:intergenic 45.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_3:52251530-52251549 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_3:52251587-52251606 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_3:52251656-52251675 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_3:52251659-52251678 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_3:52251674-52251693 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_3:52251744-52251763 Msa0124460:CDS 45.0%
TCTGTCACCATTCTCACTGT+TGG - chr1_3:52251847-52251866 Msa0124460:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_3:52252119-52252138 Msa0124460:intron 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_3:52252156-52252175 Msa0124460:intron 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_3:52252165-52252184 Msa0124460:intron 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_3:52252487-52252506 Msa0124460:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_3:52252573-52252592 Msa0124460:intron 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_3:52252692-52252711 Msa0124460:CDS 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_3:52252741-52252760 Msa0124460:intron 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_3:52252767-52252786 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_3:52252764-52252783 Msa0124460:intron 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1_3:52252939-52252958 Msa0124460:intron 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1_3:52252943-52252962 None:intergenic 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_3:52253059-52253078 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_3:52253126-52253145 Msa0124460:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_3:52253358-52253377 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_3:52253459-52253478 Msa0124460:intron 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_3:52253612-52253631 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_3:52253728-52253747 None:intergenic 45.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_3:52251545-52251564 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_3:52251557-52251576 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_3:52251565-52251584 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_3:52251569-52251588 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_3:52251820-52251839 Msa0124460:CDS 50.0%
CAGTGAGAATGGTGACAGAG+TGG + chr1_3:52251846-52251865 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_3:52252070-52252089 Msa0124460:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_3:52252084-52252103 Msa0124460:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_3:52252103-52252122 Msa0124460:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_3:52252104-52252123 Msa0124460:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_3:52252115-52252134 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_3:52252115-52252134 Msa0124460:intron 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_3:52252118-52252137 Msa0124460:intron 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_3:52252120-52252139 Msa0124460:intron 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_3:52252135-52252154 Msa0124460:intron 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_3:52252486-52252505 Msa0124460:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_3:52252497-52252516 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_3:52252500-52252519 Msa0124460:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_3:52252513-52252532 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_3:52252572-52252591 Msa0124460:intron 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_3:52252574-52252593 Msa0124460:intron 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_3:52252683-52252702 Msa0124460:CDS 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_3:52252961-52252980 Msa0124460:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_3:52252970-52252989 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_3:52252967-52252986 Msa0124460:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_3:52252982-52253001 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_3:52253038-52253057 Msa0124460:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_3:52253096-52253115 Msa0124460:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_3:52253717-52253736 None:intergenic 50.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_3:52251545-52251564 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_3:52251557-52251576 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_3:52251565-52251584 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_3:52251569-52251588 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_3:52251820-52251839 Msa0124460:CDS 50.0%
CAGTGAGAATGGTGACAGAG+TGG + chr1_3:52251846-52251865 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_3:52252070-52252089 Msa0124460:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_3:52252084-52252103 Msa0124460:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_3:52252103-52252122 Msa0124460:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_3:52252104-52252123 Msa0124460:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_3:52252115-52252134 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_3:52252115-52252134 Msa0124460:intron 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_3:52252118-52252137 Msa0124460:intron 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_3:52252120-52252139 Msa0124460:intron 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_3:52252135-52252154 Msa0124460:intron 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_3:52252486-52252505 Msa0124460:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_3:52252497-52252516 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_3:52252500-52252519 Msa0124460:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_3:52252513-52252532 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_3:52252572-52252591 Msa0124460:intron 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_3:52252574-52252593 Msa0124460:intron 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_3:52252683-52252702 Msa0124460:CDS 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_3:52252961-52252980 Msa0124460:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_3:52252970-52252989 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_3:52252967-52252986 Msa0124460:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_3:52252982-52253001 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_3:52253038-52253057 Msa0124460:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_3:52253096-52253115 Msa0124460:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_3:52253717-52253736 None:intergenic 50.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_3:52252083-52252102 Msa0124460:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_3:52252085-52252104 Msa0124460:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_3:52252173-52252192 Msa0124460:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_3:52252581-52252600 None:intergenic 55.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_3:52252083-52252102 Msa0124460:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_3:52252085-52252104 Msa0124460:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_3:52252173-52252192 Msa0124460:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_3:52252581-52252600 None:intergenic 55.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_3:52251787-52251806 Msa0124460:CDS 60.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_3:52251787-52251806 Msa0124460:CDS 60.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_3:52251785-52251804 None:intergenic 65.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_3:52251785-52251804 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52251527 52253873 52251527 ID=Msa0124460;Name=Msa0124460
chr1_3 mRNA 52251527 52253873 52251527 ID=Msa0124460-mRNA-1;Parent=Msa0124460;Name=Msa0124460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=11|1|1|1|1|1|6|134|401
chr1_3 exon 52251527 52251843 52251527 ID=Msa0124460-mRNA-1:exon:16014;Parent=Msa0124460-mRNA-1
chr1_3 exon 52252173 52252450 52252173 ID=Msa0124460-mRNA-1:exon:16013;Parent=Msa0124460-mRNA-1
chr1_3 exon 52252579 52252717 52252579 ID=Msa0124460-mRNA-1:exon:16012;Parent=Msa0124460-mRNA-1
chr1_3 exon 52252805 52252907 52252805 ID=Msa0124460-mRNA-1:exon:16011;Parent=Msa0124460-mRNA-1
chr1_3 exon 52253206 52253327 52253206 ID=Msa0124460-mRNA-1:exon:16010;Parent=Msa0124460-mRNA-1
chr1_3 exon 52253482 52253873 52253482 ID=Msa0124460-mRNA-1:exon:16009;Parent=Msa0124460-mRNA-1
chr1_3 five_prime_UTR 52253863 52253873 52253863 ID=Msa0124460-mRNA-1:five_prime_utr;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52253482 52253862 52253482 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52253206 52253327 52253206 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52252805 52252907 52252805 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52252579 52252717 52252579 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52252173 52252450 52252173 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 CDS 52251661 52251843 52251661 ID=Msa0124460-mRNA-1:cds;Parent=Msa0124460-mRNA-1
chr1_3 three_prime_UTR 52251527 52251660 52251527 ID=Msa0124460-mRNA-1:three_prime_utr;Parent=Msa0124460-mRNA-1
Gene Sequence

>Msa0124460

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAGCTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATAATAAATACCAACAGCGGTGGACATGCCGTGATTGGCTTCTACTTTGCAAAAGAGCTACTTGGTGCTGGCCACTCTGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGTGAGGAGTGGTTCTTTGACAGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTTCCTTTCCGTAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>Msa0124460

MAMLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLASKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*