AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222900 MtrunA17_Chr4g0074531 98.081 521 10 0 1 521 1 521 0.0 1065
Msa1222900 MtrunA17_Chr3g0141761 68.397 443 140 0 79 521 88 530 0.0 660
Msa1222900 MtrunA17_Chr4g0035171 64.224 464 162 2 61 521 66 528 0.0 656
Msa1222900 MtrunA17_Chr7g0271011 62.815 476 166 2 57 521 61 536 0.0 632
Msa1222900 MtrunA17_Chr0c30g0494071 69.231 481 37 6 74 521 13 415 0.0 616
Msa1222900 MtrunA17_Chr5g0447341 57.882 425 172 4 99 521 96 515 0.0 518
Msa1222900 MtrunA17_Chr3g0120471 53.785 502 208 9 25 521 29 511 6.32e-180 515
Msa1222900 MtrunA17_Chr3g0144741 69.531 256 77 1 82 337 80 334 1.81e-128 379
Msa1222900 MtrunA17_Chr3g0144731 62.500 160 59 1 362 521 3 161 2.92e-68 216
Msa1222900 MtrunA17_Chr0c30g0494061 93.939 66 4 0 10 75 1 66 2.84e-36 129
Msa1222900 MtrunA17_Chr4g0077071 45.946 74 39 1 354 426 2 75 7.66e-15 70.1
Msa1222900 MtrunA17_Chr6g0454161 41.860 86 42 2 400 479 92 175 2.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222900 AT5G19220.1 78.817 524 106 3 1 521 1 522 0.0 865
Msa1222900 AT1G27680.1 67.735 468 151 0 54 521 51 518 0.0 687
Msa1222900 AT4G39210.2 61.966 468 173 3 58 521 55 521 0.0 628
Msa1222900 AT4G39210.1 61.966 468 173 3 58 521 55 521 0.0 628
Msa1222900 AT2G21590.2 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.3 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.5 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.4 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.7 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.1 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT2G21590.6 63.920 449 159 2 75 521 76 523 0.0 614
Msa1222900 AT5G48300.1 54.564 482 211 5 42 521 45 520 0.0 522
Msa1222900 AT1G05610.1 40.878 433 236 9 87 515 54 470 2.56e-110 337
Msa1222900 AT1G05610.2 40.367 436 240 9 87 515 54 476 4.64e-109 333

Find 140 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCAAATGTTCATTTAA+AGG 0.138712 8_1:-87296618 Msa1222900:intron
CTGGTGGATACAATTGTATT+TGG 0.249701 8_1:-87300761 Msa1222900:five_prime_UTR
AGATACTTCTTAATCTATTA+AGG 0.264868 8_1:-87297838 Msa1222900:intron
TCCTCAAATCCGTGGTAAAA+TGG 0.265578 8_1:+87295811 None:intergenic
TTTCGGTTCCTACTTGATTT+TGG 0.266526 8_1:+87296277 None:intergenic
TTTCTACTGGTCACCATTCC+TGG 0.267523 8_1:+87300494 None:intergenic
CTTATCTCTTCAACGATTAC+TGG 0.268611 8_1:-87297183 Msa1222900:CDS
TCACCGGCGAAGGGACAAAA+TGG 0.271758 8_1:+87300583 None:intergenic
GCTTTGAGCTCTGCTCCTTT+AGG 0.279836 8_1:+87298045 None:intergenic
CAAGTGGATACAACCGTTCT+TGG 0.306769 8_1:-87297929 Msa1222900:CDS
TTCCAATTGGAGGTGCTTAT+AGG 0.311709 8_1:-87299015 Msa1222900:CDS
TATAGCCGCGCCTCAGATTT+CGG 0.318771 8_1:-87298117 Msa1222900:intron
CCTCTACCGTATGGACTATA+TGG 0.343087 8_1:-87298419 Msa1222900:CDS
ATCACTACGCATTTGAAGAT+TGG 0.360996 8_1:+87300728 None:intergenic
ATGCTGTGCGGCAGTTTCAC+TGG 0.369035 8_1:-87298641 Msa1222900:CDS
TTTGCTCGTCGCTTAGTTAG+AGG 0.376799 8_1:+87299417 None:intergenic
GATGTTAAGATAGACAGAAT+TGG 0.383063 8_1:+87295696 None:intergenic
TCCGGTACTGGAGTCACTTT+CGG 0.387235 8_1:-87298881 Msa1222900:CDS
TTCCTAAATTAGGTTCCAAT+TGG 0.393610 8_1:-87299028 Msa1222900:intron
ATGTTAAGATAGACAGAATT+GGG 0.406966 8_1:+87295697 None:intergenic
CGTGGCGTTTGTAACAAAAC+TGG 0.411332 8_1:-87300780 Msa1222900:five_prime_UTR
TTTCCAACTGCAAATGACTT+TGG 0.412063 8_1:-87297658 Msa1222900:CDS
CGTGCTTACAACTCCGGTAC+TGG 0.418287 8_1:-87298893 Msa1222900:CDS
CACAATGGATATAAATAGAT+TGG 0.419416 8_1:-87295739 Msa1222900:three_prime_UTR
CACAACCTTCAAGTTTCTAC+TGG 0.421899 8_1:+87300481 None:intergenic
ACTCCCATCGAAGCAATATA+TGG 0.423603 8_1:+87297878 None:intergenic
TTCATAGAGCATAGTGTAGT+TGG 0.423776 8_1:-87296656 Msa1222900:CDS
GGAAGAGTTCCAATAGGAAT+AGG 0.426216 8_1:-87296308 Msa1222900:CDS
ATCCTCAATATCCTTGCTCC+TGG 0.426326 8_1:+87298465 None:intergenic
CTATTGATGCAGTTACTCAT+TGG 0.434110 8_1:+87298980 None:intergenic
ATAACTGCCACGACTGTACT+TGG 0.437008 8_1:+87299471 None:intergenic
AGCCTATAAGCACCTCCAAT+TGG 0.440968 8_1:+87299013 None:intergenic
GTTATACTTGGTGGAGGAGC+TGG 0.446891 8_1:-87299453 Msa1222900:CDS
TCACTACGCATTTGAAGATT+GGG 0.449428 8_1:+87300729 None:intergenic
CACTCTTTCTTGTCTGCCAA+TGG 0.453178 8_1:-87298255 Msa1222900:CDS
CTAAATTAGGTTCCAATTGG+AGG 0.458441 8_1:-87299025 Msa1222900:intron
GACAGAATTGGGATATAAGA+TGG 0.461311 8_1:+87295708 None:intergenic
ATGAGTAACTGCATCAATAG+TGG 0.461743 8_1:-87298977 Msa1222900:CDS
TTTGTCCCTTCGCCGGTGAT+CGG 0.469348 8_1:-87300579 Msa1222900:five_prime_UTR
TAAAATTCTTTAGCTGAGGC+AGG 0.478517 8_1:+87297622 None:intergenic
ACCGTTCAGCTACGTGAGCC+AGG 0.478588 8_1:-87300512 Msa1222900:CDS
TTTCTCCTTGATGTGTACAT+AGG 0.483924 8_1:+87296876 None:intergenic
AAAATGGTTCAAACAAATGA+TGG 0.486066 8_1:+87295827 None:intergenic
AGAAATGAGATTTGTAAAGC+TGG 0.488846 8_1:-87295573 Msa1222900:three_prime_UTR
GGAATTTGAGATGTTAATGA+AGG 0.493532 8_1:+87300605 None:intergenic
TCATTTAGTGAAAAGCCTAA+AGG 0.496100 8_1:-87298060 Msa1222900:CDS
CTTGTCTGCCAATGGATGAC+AGG 0.496401 8_1:-87298247 Msa1222900:intron
CTTGCTGCAACTCAAACTCC+AGG 0.496669 8_1:-87298699 Msa1222900:CDS
GCAGTTTCACTGGCTCTTTG+AGG 0.499205 8_1:-87298631 Msa1222900:intron
GGTGACCAGTAGAAACTTGA+AGG 0.503646 8_1:-87300486 Msa1222900:CDS
GCTGAGGGAAGAGTTCCAAT+AGG 0.519229 8_1:-87296314 Msa1222900:CDS
ATACAGGACACAGTGATGCT+TGG 0.524075 8_1:-87296380 Msa1222900:intron
AAAACCATATATTGCTTCGA+TGG 0.524539 8_1:-87297882 Msa1222900:CDS
AAAATTCAACAATTGAAGAC+GGG 0.524972 8_1:-87295871 Msa1222900:CDS
TCCCAGGAGCAAGGATATTG+AGG 0.529538 8_1:-87298467 Msa1222900:CDS
ACAGTCGTGGCAGTTATACT+TGG 0.529938 8_1:-87299465 Msa1222900:CDS
GTCGTGGCAGTTATACTTGG+TGG 0.532140 8_1:-87299462 Msa1222900:CDS
ACTGGAGTCACTTTCGGAGA+TGG 0.533530 8_1:-87298875 Msa1222900:CDS
CACCGGCGAAGGGACAAAAT+GGG 0.534273 8_1:+87300584 None:intergenic
GATCCAAAGTCATTTGCAGT+TGG 0.534676 8_1:+87297655 None:intergenic
TCCGAAAGTGACTCCAGTAC+CGG 0.535857 8_1:+87298880 None:intergenic
CATGTCTCTCACTGCTGATG+TGG 0.536057 8_1:-87300366 Msa1222900:CDS
TACCATCAGATCATTCTTTG+AGG 0.536197 8_1:-87297149 Msa1222900:CDS
CCATATAGTCCATACGGTAG+AGG 0.536873 8_1:+87298419 None:intergenic
TTATCTCTTCAACGATTACT+GGG 0.537052 8_1:-87297182 Msa1222900:CDS
AACCGTTCTTGGTCTTTCGA+AGG 0.537925 8_1:-87297918 Msa1222900:CDS
GAGCTTCATGCTGCTACCAA+TGG 0.540764 8_1:-87300422 Msa1222900:CDS
AACACTCTTGGTGCAACCAT+TGG 0.542518 8_1:+87300406 None:intergenic
TGCATCGTAAAAGCTAAACT+TGG 0.547364 8_1:+87296905 None:intergenic
TTGCTATTGTCAATCTTCGA+TGG 0.549202 8_1:+87296846 None:intergenic
CTATGAAACTGAGGCAGAAG+TGG 0.552867 8_1:-87296348 Msa1222900:CDS
TTGCTCGTCGCTTAGTTAGA+GGG 0.553232 8_1:+87299418 None:intergenic
TCCTCAATATCCTTGCTCCT+GGG 0.553261 8_1:+87298466 None:intergenic
CAAAGTCCATATAGTCCATA+CGG 0.554961 8_1:+87298413 None:intergenic
ATCCTTCGAAAGACCAAGAA+CGG 0.557150 8_1:+87297916 None:intergenic
AAACCATATATTGCTTCGAT+GGG 0.560652 8_1:-87297881 Msa1222900:CDS
AAATGGTTCAAACAAATGAT+GGG 0.563185 8_1:+87295828 None:intergenic
TGGGGATCACCTCTACCGTA+TGG 0.564627 8_1:-87298428 Msa1222900:CDS
GTTGCACCAAGAGTGTTACT+AGG 0.567304 8_1:-87300400 Msa1222900:CDS
CATGTAAAATTCTTTAGCTG+AGG 0.568397 8_1:+87297618 None:intergenic
GCAACCTACCTGTCATCCAT+TGG 0.568958 8_1:+87298239 None:intergenic
AATCAATGTCCTACACATGA+AGG 0.570702 8_1:+87300654 None:intergenic
TCGTAAAAGCTAAACTTGGA+TGG 0.571340 8_1:+87296909 None:intergenic
AACTACACTATGCTCTATGA+AGG 0.573836 8_1:+87296658 None:intergenic
CTTAGTTAGAGGGAAGAGAC+GGG 0.579833 8_1:+87299428 None:intergenic
AACGATTACTGGGAGGACAT+AGG 0.581490 8_1:-87297172 Msa1222900:CDS
TGCAAATGACTTTGGATCAG+AGG 0.582266 8_1:-87297650 Msa1222900:CDS
TGATAGCATTATCTGACCAC+TGG 0.582297 8_1:+87300538 None:intergenic
TGCCTCAAAGAATGATCTGA+TGG 0.583837 8_1:+87297147 None:intergenic
CAAAACCTATGTACACATCA+AGG 0.586204 8_1:-87296881 Msa1222900:CDS
TTACAAACGCCACGAAGTAG+AGG 0.586616 8_1:+87300789 None:intergenic
ATTGCACGTGCTTACAACTC+CGG 0.586744 8_1:-87298899 Msa1222900:CDS
ACTCAAACTCCAGGGGAACA+AGG 0.586901 8_1:-87298690 Msa1222900:CDS
ATACAACAGTGACGCCGGAA+CGG 0.588438 8_1:+87295897 None:intergenic
TGATGTGGCTAGCGAATCCA+AGG 0.589531 8_1:-87300351 Msa1222900:intron
AGTGGCAGCACAGTTAGCTG+AGG 0.590518 8_1:-87296330 Msa1222900:CDS
ACAAACGCCACGAAGTAGAG+GGG 0.592655 8_1:+87300791 None:intergenic
TGAAGATTGACAACAAAGGA+AGG 0.594911 8_1:-87298089 Msa1222900:CDS
GGCGTTTGTAACAAAACTGG+TGG 0.597919 8_1:-87300777 Msa1222900:five_prime_UTR
TCCTGGCTCACGTAGCTGAA+CGG 0.602124 8_1:+87300511 None:intergenic
TGAGTAACTGCATCAATAGT+GGG 0.602456 8_1:-87298976 Msa1222900:CDS
TTTCAATACAACAGTGACGC+CGG 0.605108 8_1:+87295892 None:intergenic
TTGCTGCAACTCAAACTCCA+GGG 0.607945 8_1:-87298698 Msa1222900:CDS
GTGGCAGTTATACTTGGTGG+AGG 0.608267 8_1:-87299459 Msa1222900:CDS
TCAGCTACGTGAGCCAGGAA+TGG 0.608992 8_1:-87300507 Msa1222900:CDS
GTTGATTCAATTATATCACA+TGG 0.609797 8_1:-87296698 Msa1222900:CDS
GCTTAGTTAGAGGGAAGAGA+CGG 0.611428 8_1:+87299427 None:intergenic
GGGAGTGTACGTCTTCAAGA+AGG 0.612483 8_1:-87297861 Msa1222900:CDS
GAGGCTGATAGATCATCAGA+AGG 0.613138 8_1:-87295929 Msa1222900:CDS
ACTACACAACCTTCATGTGT+AGG 0.614291 8_1:-87300663 Msa1222900:five_prime_UTR
GAAGTAGGATCCCAGGAGCA+AGG 0.614406 8_1:-87298476 Msa1222900:intron
TTAACTGCAGGGAGTACAAG+AGG 0.616616 8_1:-87295948 Msa1222900:intron
TACAAACGCCACGAAGTAGA+GGG 0.619232 8_1:+87300790 None:intergenic
AGGAGCAGAGCTCAAAGCAA+TGG 0.621977 8_1:-87298040 Msa1222900:intron
TGAATTGCAATCTCTCTGCA+CGG 0.623735 8_1:-87295608 Msa1222900:three_prime_UTR
GTGGCAGCACAGTTAGCTGA+GGG 0.623997 8_1:-87296329 Msa1222900:CDS
TGCAATATGTCTGTTGAGTG+AGG 0.624023 8_1:+87298916 None:intergenic
GATACTCACATGCTCAGTGA+GGG 0.627354 8_1:+87297117 None:intergenic
CTATTGTCAATCTTCGATGG+TGG 0.633694 8_1:+87296849 None:intergenic
ATCCAGGATCATCGAGAGAG+CGG 0.634167 8_1:-87298287 Msa1222900:intron
CTTCATCAGACCGAAATCTG+AGG 0.635986 8_1:+87298107 None:intergenic
ATCGAAGATTGACAATAGCA+AGG 0.647211 8_1:-87296844 Msa1222900:intron
AAGGGATCCAAGTACAGTCG+TGG 0.648334 8_1:-87299478 Msa1222900:CDS
TAGGACATTGATTTCAAACA+CGG 0.648351 8_1:-87300644 Msa1222900:five_prime_UTR
TGCTGCAACTCAAACTCCAG+GGG 0.653704 8_1:-87298697 Msa1222900:CDS
AAAGCTCGTCCTCAAATCCG+TGG 0.659004 8_1:+87295803 None:intergenic
CACATCAGCAGTGAGAGACA+TGG 0.659597 8_1:+87300367 None:intergenic
ACAATTGTATTTGGATAACG+TGG 0.668904 8_1:-87300752 Msa1222900:five_prime_UTR
AGCTGATTACTATGAAACTG+AGG 0.673409 8_1:-87296357 Msa1222900:CDS
AGGCTGATAGATCATCAGAA+GGG 0.673829 8_1:-87295928 Msa1222900:CDS
TTTCGGAGATGGCTATGTCG+AGG 0.674748 8_1:-87298864 Msa1222900:intron
TCAGACCGAAATCTGAGGCG+CGG 0.680822 8_1:+87298112 None:intergenic
TGATACTCACATGCTCAGTG+AGG 0.683087 8_1:+87297116 None:intergenic
AAAATGGCAGTCTCTGCCAG+TGG 0.689914 8_1:-87300554 Msa1222900:CDS
CTGATGAAGATTGACAACAA+AGG 0.698426 8_1:-87298093 Msa1222900:CDS
CAAACGCCACGAAGTAGAGG+GGG 0.704127 8_1:+87300792 None:intergenic
TCTCTTCAACGATTACTGGG+AGG 0.713335 8_1:-87297179 Msa1222900:CDS
AAACACGGACAAGAAGACAA+AGG 0.716788 8_1:-87300629 Msa1222900:five_prime_UTR
TGTTGTCATAGCAAACTCAG+AGG 0.724048 8_1:-87296147 Msa1222900:intron
AAGGTACTGCTGATGCTGTG+CGG 0.750182 8_1:-87298653 Msa1222900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATAAAAACACAA+TGG - chr8_1:87300711-87300730 Msa1222900:five_prime_UTR 10.0%
!! GAATTTAAATAACAATTCAT+TGG + chr8_1:87296389-87296408 None:intergenic 15.0%
!!! ACCAATTAATTTAATTTAGA+TGG - chr8_1:87298781-87298800 Msa1222900:intron 15.0%
!! TAAATTCCTAAAATGATTTA+AGG - chr8_1:87299092-87299111 Msa1222900:intron 15.0%
!! ATATTTAAATCTCAAAATCA+TGG + chr8_1:87299500-87299519 None:intergenic 15.0%
!! TTAATTTATCGAATATCCTA+TGG + chr8_1:87295595-87295614 None:intergenic 20.0%
!!! ATCATTTTTTTTGTTGGAAT+TGG + chr8_1:87295627-87295646 None:intergenic 20.0%
!! TTCCAACAAAAAAAATGATA+AGG - chr8_1:87295628-87295647 Msa1222900:three_prime_UTR 20.0%
!!! AGAAATCTTATGTTTTTCTT+TGG + chr8_1:87296364-87296383 None:intergenic 20.0%
!! ATGGATTTACAATTATATAG+TGG - chr8_1:87296454-87296473 Msa1222900:intron 20.0%
!! TAAACAAAACTCTTAATCAA+TGG + chr8_1:87296707-87296726 None:intergenic 20.0%
!! TATATTACTGCATTGAATTT+AGG + chr8_1:87296854-87296873 None:intergenic 20.0%
!! TAAATTCAATGCAGTAATAT+AGG - chr8_1:87296853-87296872 Msa1222900:CDS 20.0%
!! AAATTCAATGCAGTAATATA+GGG - chr8_1:87296854-87296873 Msa1222900:CDS 20.0%
!! AGATACTTCTTAATCTATTA+AGG - chr8_1:87298627-87298646 Msa1222900:intron 20.0%
!! TAATGTTGTATCAAAATGTT+AGG - chr8_1:87298656-87298675 Msa1222900:CDS 20.0%
!! GCCATCTAAATTAAATTAAT+TGG + chr8_1:87298785-87298804 None:intergenic 20.0%
!!! TTTTCACCTTAAATCATTTT+AGG + chr8_1:87299101-87299120 None:intergenic 20.0%
!! TGAAGTTTAATTCATTTCTT+AGG + chr8_1:87299399-87299418 None:intergenic 20.0%
!! AAACTCAAATGTTCATTTAA+AGG - chr8_1:87299847-87299866 Msa1222900:intron 20.0%
!!! ATCTTTTGAAAATAGTAGAT+TGG + chr8_1:87299883-87299902 None:intergenic 20.0%
!! AATAAACATACCAAAATACA+TGG + chr8_1:87300042-87300061 None:intergenic 20.0%
!! AAAAATTCAACAATTGAAGA+CGG - chr8_1:87300593-87300612 Msa1222900:five_prime_UTR 20.0%
!!! GTCCTTATCATTTTTTTTGT+TGG + chr8_1:87295633-87295652 None:intergenic 25.0%
!!! TTTTGTAATGGAGAAATGAT+GGG - chr8_1:87296010-87296029 Msa1222900:intron 25.0%
!!! TTTGATTCTCTACTTTTGTT+TGG - chr8_1:87296417-87296436 Msa1222900:intron 25.0%
! TACCATGACTATATATGTAT+AGG - chr8_1:87296480-87296499 Msa1222900:intron 25.0%
! TACCTATACATATATAGTCA+TGG + chr8_1:87296485-87296504 None:intergenic 25.0%
!! ACTTTTTGTTAGATTAAAGC+TGG - chr8_1:87296531-87296550 Msa1222900:intron 25.0%
!! TTACTACACGTAAATTTTGA+AGG - chr8_1:87296741-87296760 Msa1222900:intron 25.0%
! AAATGTTTCCATATGATGAA+TGG - chr8_1:87296923-87296942 Msa1222900:intron 25.0%
! AATGTTTCCATATGATGAAT+GGG - chr8_1:87296924-87296943 Msa1222900:intron 25.0%
! TTATGATGAATGGAACAATT+AGG + chr8_1:87297115-87297134 None:intergenic 25.0%
! AAGGAAATGAAAAACGTAAA+TGG - chr8_1:87297329-87297348 Msa1222900:intron 25.0%
! AGGAAATGAAAAACGTAAAT+GGG - chr8_1:87297330-87297349 Msa1222900:intron 25.0%
!!! ATTAAGTTGGTTATCTTCTT+TGG - chr8_1:87297411-87297430 Msa1222900:intron 25.0%
!!! TTAAGTTGGTTATCTTCTTT+GGG - chr8_1:87297412-87297431 Msa1222900:intron 25.0%
! ATAATTTACAAATCAACGTG+CGG + chr8_1:87297712-87297731 None:intergenic 25.0%
!! AAGCTACAACATATATTTTG+TGG + chr8_1:87297889-87297908 None:intergenic 25.0%
!! AAATATGCTTTTCATGAAGT+AGG - chr8_1:87297974-87297993 Msa1222900:intron 25.0%
!!! AAATGTTAGGTTTTTTCTTG+TGG - chr8_1:87298669-87298688 Msa1222900:CDS 25.0%
!! AGCTAAAGAATTTTACATGA+AGG - chr8_1:87298851-87298870 Msa1222900:intron 25.0%
!! TTAAGACTTTTGTCTAAGTT+AGG + chr8_1:87299038-87299057 None:intergenic 25.0%
! TAAAAACTTATAGCTGCTTA+TGG - chr8_1:87299055-87299074 Msa1222900:intron 25.0%
! ATGTTCACTTTCACTTATTA+TGG - chr8_1:87299230-87299249 Msa1222900:intron 25.0%
! TCAATTTCAGTTGTAATTGA+TGG - chr8_1:87299369-87299388 Msa1222900:intron 25.0%
! AAAGGTCACATAATATATTG+AGG + chr8_1:87299735-87299754 None:intergenic 25.0%
!! GTTGATTCAATTATATCACA+TGG - chr8_1:87299767-87299786 Msa1222900:intron 25.0%
! CAAATGTTCATTTAAAGGTT+TGG - chr8_1:87299852-87299871 Msa1222900:intron 25.0%
! GTAAATCAGGTAAGTATATA+TGG + chr8_1:87299932-87299951 None:intergenic 25.0%
!! AATATTCCTAAAGTTTTTGC+TGG - chr8_1:87299984-87300003 Msa1222900:intron 25.0%
! ATTGTATTACACTTCTATAC+AGG - chr8_1:87300069-87300088 Msa1222900:intron 25.0%
! ATTGACAAAAATGCTAGAAT+TGG - chr8_1:87300289-87300308 Msa1222900:intron 25.0%
! AAAATTCAACAATTGAAGAC+GGG - chr8_1:87300594-87300613 Msa1222900:five_prime_UTR 25.0%
! AAATGGTTCAAACAAATGAT+GGG + chr8_1:87300640-87300659 None:intergenic 25.0%
! AAAATGGTTCAAACAAATGA+TGG + chr8_1:87300641-87300660 None:intergenic 25.0%
! CACAATGGATATAAATAGAT+TGG - chr8_1:87300726-87300745 Msa1222900:five_prime_UTR 25.0%
! ATGTTAAGATAGACAGAATT+GGG + chr8_1:87300771-87300790 None:intergenic 25.0%
ATATCCTATGGATTTAGACT+TGG + chr8_1:87295583-87295602 None:intergenic 30.0%
ACAATTGTATTTGGATAACG+TGG - chr8_1:87295713-87295732 Msa1222900:three_prime_UTR 30.0%
!! TAGGACATTGATTTCAAACA+CGG - chr8_1:87295821-87295840 Msa1222900:three_prime_UTR 30.0%
! GGAATTTGAGATGTTAATGA+AGG + chr8_1:87295863-87295882 None:intergenic 30.0%
!! AAGGTTGTGAAGTTTTGTAA+TGG - chr8_1:87295998-87296017 Msa1222900:intron 30.0%
!! GTTTTGTAATGGAGAAATGA+TGG - chr8_1:87296009-87296028 Msa1222900:intron 30.0%
! ATTTTTCCTAGTAACACTCT+TGG + chr8_1:87296074-87296093 None:intergenic 30.0%
CAAGAAAGAGTTAATTGCAT+TGG + chr8_1:87296177-87296196 None:intergenic 30.0%
GCAATTAACTCTTTCTTGTT+TGG - chr8_1:87296179-87296198 Msa1222900:CDS 30.0%
TAGAAACGTTGTGAAATTCT+TGG - chr8_1:87296290-87296309 Msa1222900:CDS 30.0%
!!! TTTGGCTTGTATTTTGACTA+TGG - chr8_1:87296435-87296454 Msa1222900:intron 30.0%
TGACCTATATACTACTTCAA+TGG - chr8_1:87296565-87296584 Msa1222900:intron 30.0%
CTATATACTACTTCAATGGT+GGG - chr8_1:87296569-87296588 Msa1222900:intron 30.0%
CAAAGAAAATCTTAATGGAG+GGG + chr8_1:87296619-87296638 None:intergenic 30.0%
GCAAAGAAAATCTTAATGGA+GGG + chr8_1:87296620-87296639 None:intergenic 30.0%
AGCAAAGAAAATCTTAATGG+AGG + chr8_1:87296621-87296640 None:intergenic 30.0%
TGCACAAAGTATAAAGTTGT+TGG + chr8_1:87296682-87296701 None:intergenic 30.0%
ATTACTGCATTGAATTTAGG+TGG + chr8_1:87296851-87296870 None:intergenic 30.0%
CATATGATGAATGGGAATAT+GGG - chr8_1:87296932-87296951 Msa1222900:intron 30.0%
AAAATGCAGATGTGGAAAAA+AGG - chr8_1:87296968-87296987 Msa1222900:intron 30.0%
AAATGCAGATGTGGAAAAAA+GGG - chr8_1:87296969-87296988 Msa1222900:intron 30.0%
AGAAAAGAAAAACTTACAGC+AGG + chr8_1:87297075-87297094 None:intergenic 30.0%
GAATGGAACAATTAGGAAAA+TGG + chr8_1:87297108-87297127 None:intergenic 30.0%
GTGGTTGCTTAATTATAGTT+TGG - chr8_1:87297140-87297159 Msa1222900:CDS 30.0%
TTGAATGTAACAATAAGTGC+CGG - chr8_1:87297236-87297255 Msa1222900:intron 30.0%
GGAAATGAAAAACGTAAATG+GGG - chr8_1:87297331-87297350 Msa1222900:intron 30.0%
ATATGTAGCTGCTTACATTA+TGG + chr8_1:87297393-87297412 None:intergenic 30.0%
TAAGCAGCTACATATTAAGT+TGG - chr8_1:87297398-87297417 Msa1222900:intron 30.0%
!! TAAGTTGGTTATCTTCTTTG+GGG - chr8_1:87297413-87297432 Msa1222900:intron 30.0%
TTCCTAAATTAGGTTCCAAT+TGG - chr8_1:87297437-87297456 Msa1222900:intron 30.0%
! GTGGTTTTCTTAATTGCTTT+AGG + chr8_1:87297870-87297889 None:intergenic 30.0%
!! TGTAGCTTTTTCTTTTATGC+AGG - chr8_1:87297901-87297920 Msa1222900:CDS 30.0%
! GGTTATGCTGTTTAATACTA+TGG - chr8_1:87297922-87297941 Msa1222900:CDS 30.0%
CATCACACTTAATTGCTTAT+TGG + chr8_1:87297949-87297968 None:intergenic 30.0%
!!! AGGATGTTTTGATTCTTTCT+GGG - chr8_1:87298018-87298037 Msa1222900:intron 30.0%
ATATGGACTTTGTTAGAGTA+AGG - chr8_1:87298063-87298082 Msa1222900:CDS 30.0%
TTGACTTAAACTTCTTATCC+AGG - chr8_1:87298162-87298181 Msa1222900:intron 30.0%
TGACATGAATCTTACTACTT+GGG + chr8_1:87298256-87298275 None:intergenic 30.0%
ATGACATGAATCTTACTACT+TGG + chr8_1:87298257-87298276 None:intergenic 30.0%
! TAGGCTTTTCACTAAATGAA+AGG + chr8_1:87298404-87298423 None:intergenic 30.0%
TCATTTAGTGAAAAGCCTAA+AGG - chr8_1:87298405-87298424 Msa1222900:intron 30.0%
AAAACCATATATTGCTTCGA+TGG - chr8_1:87298583-87298602 Msa1222900:intron 30.0%
AAACCATATATTGCTTCGAT+GGG - chr8_1:87298584-87298603 Msa1222900:intron 30.0%
CATGTAAAATTCTTTAGCTG+AGG + chr8_1:87298850-87298869 None:intergenic 30.0%
ATCATTCTTTGTCATTGCAA+TGG - chr8_1:87298944-87298963 Msa1222900:CDS 30.0%
CTGAACTTGTAATTGCTTAT+TGG - chr8_1:87299169-87299188 Msa1222900:intron 30.0%
TATAGCAAAAGTTTGAATGC+AGG - chr8_1:87299259-87299278 Msa1222900:intron 30.0%
TTATCTCTTCAACGATTACT+GGG - chr8_1:87299283-87299302 Msa1222900:intron 30.0%
AAAGTTGTAATCACATGGTA+TGG + chr8_1:87299694-87299713 None:intergenic 30.0%
TATTGAGGTTGAACATTTGA+TGG + chr8_1:87299720-87299739 None:intergenic 30.0%
TACCTGATTTACTAGTTATG+TGG - chr8_1:87299940-87299959 Msa1222900:intron 30.0%
! TAGTAGTAGACCATGTATTT+TGG - chr8_1:87300029-87300048 Msa1222900:intron 30.0%
AGAAAACACCAAAATCAAGT+AGG - chr8_1:87300180-87300199 Msa1222900:intron 30.0%
! TACCATGATAGTGAAAGTTT+CGG + chr8_1:87300208-87300227 None:intergenic 30.0%
AGTAAGCTAAAGCAACTTAA+GGG + chr8_1:87300387-87300406 None:intergenic 30.0%
TGCTAATTGAATTAACTGCA+GGG - chr8_1:87300506-87300525 Msa1222900:CDS 30.0%
! TTGTTTGAACCATTTTACCA+CGG - chr8_1:87300645-87300664 Msa1222900:five_prime_UTR 30.0%
GATGTTAAGATAGACAGAAT+TGG + chr8_1:87300772-87300791 None:intergenic 30.0%
! CTGGTGGATACAATTGTATT+TGG - chr8_1:87295704-87295723 Msa1222900:three_prime_UTR 35.0%
TCACTACGCATTTGAAGATT+GGG + chr8_1:87295739-87295758 None:intergenic 35.0%
ATCACTACGCATTTGAAGAT+TGG + chr8_1:87295740-87295759 None:intergenic 35.0%
AATCAATGTCCTACACATGA+AGG + chr8_1:87295814-87295833 None:intergenic 35.0%
AAGTTCACTCAGATAAACCT+TGG + chr8_1:87296134-87296153 None:intergenic 35.0%
CCACCATTGAAGTAGTATAT+AGG + chr8_1:87296571-87296590 None:intergenic 35.0%
CCTATATACTACTTCAATGG+TGG - chr8_1:87296568-87296587 Msa1222900:intron 35.0%
GGGAGCAAAGAAAATCTTAA+TGG + chr8_1:87296624-87296643 None:intergenic 35.0%
CCATATTCCCATTCATCATA+TGG + chr8_1:87296934-87296953 None:intergenic 35.0%
CCATATGATGAATGGGAATA+TGG - chr8_1:87296931-87296950 Msa1222900:intron 35.0%
TCCATTCATCATAAGCATAG+TGG - chr8_1:87297121-87297140 Msa1222900:intron 35.0%
ACCACTATGCTTATGATGAA+TGG + chr8_1:87297125-87297144 None:intergenic 35.0%
GTTTGTGTTCGTGTTTCATA+GGG + chr8_1:87297166-87297185 None:intergenic 35.0%
TGTTTGTGTTCGTGTTTCAT+AGG + chr8_1:87297167-87297186 None:intergenic 35.0%
TAGTGTTTGGTTAGTAACAC+CGG + chr8_1:87297258-87297277 None:intergenic 35.0%
GTATCAGTGCTACATAAGTT+TGG - chr8_1:87297296-87297315 Msa1222900:intron 35.0%
! CGTTTTTCATTTCCTTGACA+GGG + chr8_1:87297325-87297344 None:intergenic 35.0%
! ACGTTTTTCATTTCCTTGAC+AGG + chr8_1:87297326-87297345 None:intergenic 35.0%
!! TCTTTGGGGTTTCCTAAATT+AGG - chr8_1:87297427-87297446 Msa1222900:intron 35.0%
CTCCAATTGGAACCTAATTT+AGG + chr8_1:87297442-87297461 None:intergenic 35.0%
CTAAATTAGGTTCCAATTGG+AGG - chr8_1:87297440-87297459 Msa1222900:intron 35.0%
CTATTGATGCAGTTACTCAT+TGG + chr8_1:87297488-87297507 None:intergenic 35.0%
ATGAGTAACTGCATCAATAG+TGG - chr8_1:87297488-87297507 Msa1222900:intron 35.0%
TGAGTAACTGCATCAATAGT+GGG - chr8_1:87297489-87297508 Msa1222900:intron 35.0%
CAAGGTAAAAAGTGGTTTCA+AGG - chr8_1:87297793-87297812 Msa1222900:intron 35.0%
!!! GAGGATGTTTTGATTCTTTC+TGG - chr8_1:87298017-87298036 Msa1222900:intron 35.0%
!!! GGATGTTTTGATTCTTTCTG+GGG - chr8_1:87298019-87298038 Msa1222900:intron 35.0%
CAAAGTCCATATAGTCCATA+CGG + chr8_1:87298055-87298074 None:intergenic 35.0%
ACATGAATCTTACTACTTGG+GGG + chr8_1:87298254-87298273 None:intergenic 35.0%
GACATGAATCTTACTACTTG+GGG + chr8_1:87298255-87298274 None:intergenic 35.0%
CTGATGAAGATTGACAACAA+AGG - chr8_1:87298372-87298391 Msa1222900:intron 35.0%
TGAAGATTGACAACAAAGGA+AGG - chr8_1:87298376-87298395 Msa1222900:intron 35.0%
TTTCCAACTGCAAATGACTT+TGG - chr8_1:87298807-87298826 Msa1222900:intron 35.0%
TAAAATTCTTTAGCTGAGGC+AGG + chr8_1:87298846-87298865 None:intergenic 35.0%
! GAAGGTATGACTGATAAAGA+AGG - chr8_1:87298869-87298888 Msa1222900:CDS 35.0%
CTGATAAAGAAGGTTTACTG+TGG - chr8_1:87298879-87298898 Msa1222900:CDS 35.0%
CTTATCTCTTCAACGATTAC+TGG - chr8_1:87299282-87299301 Msa1222900:intron 35.0%
TACCATCAGATCATTCTTTG+AGG - chr8_1:87299316-87299335 Msa1222900:intron 35.0%
CAAAACCTATGTACACATCA+AGG - chr8_1:87299584-87299603 Msa1222900:intron 35.0%
TTTCTCCTTGATGTGTACAT+AGG + chr8_1:87299592-87299611 None:intergenic 35.0%
! TTGCTATTGTCAATCTTCGA+TGG + chr8_1:87299622-87299641 None:intergenic 35.0%
ATCGAAGATTGACAATAGCA+AGG - chr8_1:87299621-87299640 Msa1222900:intron 35.0%
AACTACACTATGCTCTATGA+AGG + chr8_1:87299810-87299829 None:intergenic 35.0%
TTCATAGAGCATAGTGTAGT+TGG - chr8_1:87299809-87299828 Msa1222900:intron 35.0%
TGCCACATAACTAGTAAATC+AGG + chr8_1:87299945-87299964 None:intergenic 35.0%
TGTGGCAAGTCTCAATTTAT+AGG - chr8_1:87299958-87299977 Msa1222900:intron 35.0%
! ATTCCTAAAGTTTTTGCTGG+TGG - chr8_1:87299987-87300006 Msa1222900:intron 35.0%
TTTCCACCAGCAAAAACTTT+AGG + chr8_1:87299993-87300012 None:intergenic 35.0%
AGCTGATTACTATGAAACTG+AGG - chr8_1:87300108-87300127 Msa1222900:intron 35.0%
! GTGTTTTCTCCTATTCCTAT+TGG + chr8_1:87300169-87300188 None:intergenic 35.0%
! TTTCGGTTCCTACTTGATTT+TGG + chr8_1:87300191-87300210 None:intergenic 35.0%
AACCGAAACTTTCACTATCA+TGG - chr8_1:87300203-87300222 Msa1222900:intron 35.0%
GAGTAAGCTAAAGCAACTTA+AGG + chr8_1:87300388-87300407 None:intergenic 35.0%
GTGCTAATTGAATTAACTGC+AGG - chr8_1:87300505-87300524 Msa1222900:CDS 35.0%
GACAGAATTGGGATATAAGA+TGG + chr8_1:87300760-87300779 None:intergenic 35.0%
AGAGCCAAGTCTAAATCCAT+AGG - chr8_1:87295576-87295595 Msa1222900:three_prime_UTR 40.0%
ACTACACAACCTTCATGTGT+AGG - chr8_1:87295802-87295821 Msa1222900:three_prime_UTR 40.0%
AAACACGGACAAGAAGACAA+AGG - chr8_1:87295836-87295855 Msa1222900:three_prime_UTR 40.0%
TGATAGCATTATCTGACCAC+TGG + chr8_1:87295930-87295949 None:intergenic 40.0%
! CACAACCTTCAAGTTTCTAC+TGG + chr8_1:87295987-87296006 None:intergenic 40.0%
!! TACTTCAATGGTGGGTTACT+TGG - chr8_1:87296577-87296596 Msa1222900:intron 40.0%
!! ACTTCAATGGTGGGTTACTT+GGG - chr8_1:87296578-87296597 Msa1222900:intron 40.0%
ATTCCCATGCACACTGAAAT+GGG + chr8_1:87296644-87296663 None:intergenic 40.0%
TGCATTGAATTTAGGTGGCT+TGG + chr8_1:87296846-87296865 None:intergenic 40.0%
GCAGTTGAAAAATGCAGATG+TGG - chr8_1:87296960-87296979 Msa1222900:intron 40.0%
TGACGCTAACACGTAGATAT+TGG - chr8_1:87297193-87297212 Msa1222900:intron 40.0%
! ATTGAAAGCGTGCTAGTGTT+TGG + chr8_1:87297271-87297290 None:intergenic 40.0%
!! TTCCAATTGGAGGTGCTTAT+AGG - chr8_1:87297450-87297469 Msa1222900:intron 40.0%
TGCAATATGTCTGTTGAGTG+AGG + chr8_1:87297552-87297571 None:intergenic 40.0%
! ACACACACATAAGCTGACTT+AGG + chr8_1:87297672-87297691 None:intergenic 40.0%
AAGTGTGCTTGTTCTGTTTC+AGG - chr8_1:87297741-87297760 Msa1222900:intron 40.0%
! TTTTCATGAAGTAGGATCCC+AGG - chr8_1:87297982-87298001 Msa1222900:intron 40.0%
CTGCTTCATGATTTAGCAAG+TGG - chr8_1:87298520-87298539 Msa1222900:intron 40.0%
ATCCTTCGAAAGACCAAGAA+CGG + chr8_1:87298552-87298571 None:intergenic 40.0%
ACTCCCATCGAAGCAATATA+TGG + chr8_1:87298590-87298609 None:intergenic 40.0%
GATCCAAAGTCATTTGCAGT+TGG + chr8_1:87298813-87298832 None:intergenic 40.0%
TGCAAATGACTTTGGATCAG+AGG - chr8_1:87298815-87298834 Msa1222900:intron 40.0%
GATGCATACTGTCACAACAT+AGG + chr8_1:87298927-87298946 None:intergenic 40.0%
AGTGAACATTCTGATTCTGC+TGG + chr8_1:87299219-87299238 None:intergenic 40.0%
TGCCTCAAAGAATGATCTGA+TGG + chr8_1:87299321-87299340 None:intergenic 40.0%
CTATTGTCAATCTTCGATGG+TGG + chr8_1:87299619-87299638 None:intergenic 40.0%
ATGGAGAGTAGGGATACAAA+GGG + chr8_1:87299675-87299694 None:intergenic 40.0%
TATGGAGAGTAGGGATACAA+AGG + chr8_1:87299676-87299695 None:intergenic 40.0%
ATCACATGGTATGGAGAGTA+GGG + chr8_1:87299685-87299704 None:intergenic 40.0%
AATCACATGGTATGGAGAGT+AGG + chr8_1:87299686-87299705 None:intergenic 40.0%
GGCAGAAAGTTGTAATCACA+TGG + chr8_1:87299699-87299718 None:intergenic 40.0%
ATCAACGAGCTGCATAAGAA+AGG + chr8_1:87299753-87299772 None:intergenic 40.0%
GGAAGAGTTCCAATAGGAAT+AGG - chr8_1:87300157-87300176 Msa1222900:intron 40.0%
TGTTGTCATAGCAAACTCAG+AGG - chr8_1:87300318-87300337 Msa1222900:intron 40.0%
AAGCTAAAGCAACTTAAGGG+TGG + chr8_1:87300384-87300403 None:intergenic 40.0%
AGGCTGATAGATCATCAGAA+GGG - chr8_1:87300537-87300556 Msa1222900:CDS 40.0%
TTTCAATACAACAGTGACGC+CGG + chr8_1:87300576-87300595 None:intergenic 40.0%
! ACCATTTTACCACGGATTTG+AGG - chr8_1:87300653-87300672 Msa1222900:five_prime_UTR 40.0%
TCCTCAAATCCGTGGTAAAA+TGG + chr8_1:87300657-87300676 None:intergenic 40.0%
TGAATTGCAATCTCTCTGCA+CGG - chr8_1:87300857-87300876 Msa1222900:intron 40.0%
TACAAACGCCACGAAGTAGA+GGG + chr8_1:87295678-87295697 None:intergenic 45.0%
TTACAAACGCCACGAAGTAG+AGG + chr8_1:87295679-87295698 None:intergenic 45.0%
CGTGGCGTTTGTAACAAAAC+TGG - chr8_1:87295685-87295704 Msa1222900:three_prime_UTR 45.0%
GGCGTTTGTAACAAAACTGG+TGG - chr8_1:87295688-87295707 Msa1222900:three_prime_UTR 45.0%
!!! CTGCCATTTTTTCCGATCAC+CGG + chr8_1:87295901-87295920 None:intergenic 45.0%
TTTCTACTGGTCACCATTCC+TGG + chr8_1:87295974-87295993 None:intergenic 45.0%
GGTGACCAGTAGAAACTTGA+AGG - chr8_1:87295979-87295998 Msa1222900:intron 45.0%
! AACACTCTTGGTGCAACCAT+TGG + chr8_1:87296062-87296081 None:intergenic 45.0%
!! GTTGCACCAAGAGTGTTACT+AGG - chr8_1:87296065-87296084 Msa1222900:intron 45.0%
TACTTGGGTCCACTGTATCA+AGG - chr8_1:87296593-87296612 Msa1222900:intron 45.0%
CATTCCCATGCACACTGAAA+TGG + chr8_1:87296645-87296664 None:intergenic 45.0%
CATTTCAGTGTGCATGGGAA+TGG - chr8_1:87296643-87296662 Msa1222900:CDS 45.0%
ATAACTGCCACGACTGTACT+TGG + chr8_1:87296997-87297016 None:intergenic 45.0%
ACAGTCGTGGCAGTTATACT+TGG - chr8_1:87297000-87297019 Msa1222900:intron 45.0%
CTTAGTTAGAGGGAAGAGAC+GGG + chr8_1:87297040-87297059 None:intergenic 45.0%
GCTTAGTTAGAGGGAAGAGA+CGG + chr8_1:87297041-87297060 None:intergenic 45.0%
TTGCTCGTCGCTTAGTTAGA+GGG + chr8_1:87297050-87297069 None:intergenic 45.0%
TTTGCTCGTCGCTTAGTTAG+AGG + chr8_1:87297051-87297070 None:intergenic 45.0%
TAAGTTTGGTCACCCTGTCA+AGG - chr8_1:87297310-87297329 Msa1222900:intron 45.0%
AGCCTATAAGCACCTCCAAT+TGG + chr8_1:87297455-87297474 None:intergenic 45.0%
ATTGCACGTGCTTACAACTC+CGG - chr8_1:87297566-87297585 Msa1222900:intron 45.0%
TTGCTGCAACTCAAACTCCA+GGG - chr8_1:87297767-87297786 Msa1222900:intron 45.0%
!! CACTTTTTACCTTGTTCCCC+TGG + chr8_1:87297787-87297806 None:intergenic 45.0%
CAGGGGAACAAGGTAAAAAG+TGG - chr8_1:87297785-87297804 Msa1222900:intron 45.0%
TCCTCAATATCCTTGCTCCT+GGG + chr8_1:87298002-87298021 None:intergenic 45.0%
ATCCTCAATATCCTTGCTCC+TGG + chr8_1:87298003-87298022 None:intergenic 45.0%
CCATATAGTCCATACGGTAG+AGG + chr8_1:87298049-87298068 None:intergenic 45.0%
! CCTCTACCGTATGGACTATA+TGG - chr8_1:87298046-87298065 Msa1222900:CDS 45.0%
CACTCTTTCTTGTCTGCCAA+TGG - chr8_1:87298210-87298229 Msa1222900:intron 45.0%
CTTCATCAGACCGAAATCTG+AGG + chr8_1:87298361-87298380 None:intergenic 45.0%
CAAGTGGATACAACCGTTCT+TGG - chr8_1:87298536-87298555 Msa1222900:intron 45.0%
! AACCGTTCTTGGTCTTTCGA+AGG - chr8_1:87298547-87298566 Msa1222900:intron 45.0%
GAGCAAACAAGCTTGGCAAT+AGG + chr8_1:87298755-87298774 None:intergenic 45.0%
! TAGCACTGAGCAAACAAGCT+TGG + chr8_1:87298762-87298781 None:intergenic 45.0%
TAGCTGCTTATGGAGATGCT+AGG - chr8_1:87299065-87299084 Msa1222900:intron 45.0%
TCTGATTCTGCTGGATGCAA+AGG + chr8_1:87299210-87299229 None:intergenic 45.0%
TCTCTTCAACGATTACTGGG+AGG - chr8_1:87299286-87299305 Msa1222900:intron 45.0%
AACGATTACTGGGAGGACAT+AGG - chr8_1:87299293-87299312 Msa1222900:intron 45.0%
GATACTCACATGCTCAGTGA+GGG + chr8_1:87299351-87299370 None:intergenic 45.0%
TGATACTCACATGCTCAGTG+AGG + chr8_1:87299352-87299371 None:intergenic 45.0%
ATACAGGACACAGTGATGCT+TGG - chr8_1:87300085-87300104 Msa1222900:intron 45.0%
CTATGAAACTGAGGCAGAAG+TGG - chr8_1:87300117-87300136 Msa1222900:intron 45.0%
! TTAACTGCAGGGAGTACAAG+AGG - chr8_1:87300517-87300536 Msa1222900:CDS 45.0%
GAGGCTGATAGATCATCAGA+AGG - chr8_1:87300536-87300555 Msa1222900:CDS 45.0%
! GAAGGGTTTTACATCCGTTC+CGG - chr8_1:87300554-87300573 Msa1222900:CDS 45.0%
ATTACACCCCCTCTACTTCG+TGG - chr8_1:87295667-87295686 Msa1222900:three_prime_UTR 50.0%
ACAAACGCCACGAAGTAGAG+GGG + chr8_1:87295677-87295696 None:intergenic 50.0%
! TTCCCATTTTGTCCCTTCGC+CGG - chr8_1:87295879-87295898 Msa1222900:CDS 50.0%
! TTTTTCCGATCACCGGCGAA+GGG + chr8_1:87295894-87295913 None:intergenic 50.0%
!!! TTTTTTCCGATCACCGGCGA+AGG + chr8_1:87295895-87295914 None:intergenic 50.0%
TCGCCGGTGATCGGAAAAAA+TGG - chr8_1:87295895-87295914 Msa1222900:CDS 50.0%
AAAATGGCAGTCTCTGCCAG+TGG - chr8_1:87295911-87295930 Msa1222900:CDS 50.0%
GAGCTTCATGCTGCTACCAA+TGG - chr8_1:87296043-87296062 Msa1222900:intron 50.0%
CACATCAGCAGTGAGAGACA+TGG + chr8_1:87296101-87296120 None:intergenic 50.0%
CATGTCTCTCACTGCTGATG+TGG - chr8_1:87296099-87296118 Msa1222900:intron 50.0%
TGATGTGGCTAGCGAATCCA+AGG - chr8_1:87296114-87296133 Msa1222900:intron 50.0%
TGCTCCCATTTCAGTGTGCA+TGG - chr8_1:87296637-87296656 Msa1222900:CDS 50.0%
GCTCCCATTTCAGTGTGCAT+GGG - chr8_1:87296638-87296657 Msa1222900:CDS 50.0%
AAGGGATCCAAGTACAGTCG+TGG - chr8_1:87296987-87297006 Msa1222900:intron 50.0%
GTCGTGGCAGTTATACTTGG+TGG - chr8_1:87297003-87297022 Msa1222900:intron 50.0%
! GTGGCAGTTATACTTGGTGG+AGG - chr8_1:87297006-87297025 Msa1222900:intron 50.0%
! GTTATACTTGGTGGAGGAGC+TGG - chr8_1:87297012-87297031 Msa1222900:intron 50.0%
! TCCGGTACTGGAGTCACTTT+CGG - chr8_1:87297584-87297603 Msa1222900:intron 50.0%
TCCGAAAGTGACTCCAGTAC+CGG + chr8_1:87297588-87297607 None:intergenic 50.0%
! ACTGGAGTCACTTTCGGAGA+TGG - chr8_1:87297590-87297609 Msa1222900:intron 50.0%
TTTCGGAGATGGCTATGTCG+AGG - chr8_1:87297601-87297620 Msa1222900:intron 50.0%
CTTGCTGCAACTCAAACTCC+AGG - chr8_1:87297766-87297785 Msa1222900:intron 50.0%
TGCTGCAACTCAAACTCCAG+GGG - chr8_1:87297768-87297787 Msa1222900:intron 50.0%
ACTCAAACTCCAGGGGAACA+AGG - chr8_1:87297775-87297794 Msa1222900:intron 50.0%
!! AAGGTACTGCTGATGCTGTG+CGG - chr8_1:87297812-87297831 Msa1222900:intron 50.0%
!! GCAGTTTCACTGGCTCTTTG+AGG - chr8_1:87297834-87297853 Msa1222900:intron 50.0%
TCCCAGGAGCAAGGATATTG+AGG - chr8_1:87297998-87298017 Msa1222900:intron 50.0%
ATCCAGGATCATCGAGAGAG+CGG - chr8_1:87298178-87298197 Msa1222900:intron 50.0%
CTTGTCTGCCAATGGATGAC+AGG - chr8_1:87298218-87298237 Msa1222900:intron 50.0%
TCTGCCAATGGATGACAGGT+AGG - chr8_1:87298222-87298241 Msa1222900:intron 50.0%
GCAACCTACCTGTCATCCAT+TGG + chr8_1:87298229-87298248 None:intergenic 50.0%
! AATCTGAGGCGCGGCTATAA+TGG + chr8_1:87298347-87298366 None:intergenic 50.0%
TATAGCCGCGCCTCAGATTT+CGG - chr8_1:87298348-87298367 Msa1222900:intron 50.0%
! GCTTTGAGCTCTGCTCCTTT+AGG + chr8_1:87298423-87298442 None:intergenic 50.0%
AGGAGCAGAGCTCAAAGCAA+TGG - chr8_1:87298425-87298444 Msa1222900:CDS 50.0%
! GGGAGTGTACGTCTTCAAGA+AGG - chr8_1:87298604-87298623 Msa1222900:intron 50.0%
GCTGAGGGAAGAGTTCCAAT+AGG - chr8_1:87300151-87300170 Msa1222900:intron 50.0%
ATACAACAGTGACGCCGGAA+CGG + chr8_1:87300571-87300590 None:intergenic 50.0%
AAAGCTCGTCCTCAAATCCG+TGG + chr8_1:87300665-87300684 None:intergenic 50.0%
CAAACGCCACGAAGTAGAGG+GGG + chr8_1:87295676-87295695 None:intergenic 55.0%
CACCGGCGAAGGGACAAAAT+GGG + chr8_1:87295884-87295903 None:intergenic 55.0%
TCACCGGCGAAGGGACAAAA+TGG + chr8_1:87295885-87295904 None:intergenic 55.0%
TTTGTCCCTTCGCCGGTGAT+CGG - chr8_1:87295886-87295905 Msa1222900:CDS 55.0%
TCCTGGCTCACGTAGCTGAA+CGG + chr8_1:87295957-87295976 None:intergenic 55.0%
TCAGCTACGTGAGCCAGGAA+TGG - chr8_1:87295958-87295977 Msa1222900:intron 55.0%
ATGGAGGGGCCTTGATACAG+TGG + chr8_1:87296605-87296624 None:intergenic 55.0%
CGTGCTTACAACTCCGGTAC+TGG - chr8_1:87297572-87297591 Msa1222900:intron 55.0%
ATGCTGTGCGGCAGTTTCAC+TGG - chr8_1:87297824-87297843 Msa1222900:intron 55.0%
GAAGTAGGATCCCAGGAGCA+AGG - chr8_1:87297989-87298008 Msa1222900:intron 55.0%
TGGGGATCACCTCTACCGTA+TGG - chr8_1:87298037-87298056 Msa1222900:intron 55.0%
! TCAGACCGAAATCTGAGGCG+CGG + chr8_1:87298356-87298375 None:intergenic 55.0%
AGTGGCAGCACAGTTAGCTG+AGG - chr8_1:87300135-87300154 Msa1222900:intron 55.0%
GTGGCAGCACAGTTAGCTGA+GGG - chr8_1:87300136-87300155 Msa1222900:intron 55.0%
ACCGTTCAGCTACGTGAGCC+AGG - chr8_1:87295953-87295972 Msa1222900:intron 60.0%
CACCGCTCTCTCGATGATCC+TGG + chr8_1:87298183-87298202 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 87295573 87300914 87295573 ID=Msa1222900;Name=Msa1222900
chr8_1 mRNA 87295573 87300914 87295573 ID=Msa1222900-mRNA-1;Parent=Msa1222900;Name=Msa1222900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=293|1|1|1|0.93|0.87|16|286|521
chr8_1 exon 87295573 87295960 87295573 ID=Msa1222900-mRNA-1:exon:31568;Parent=Msa1222900-mRNA-1
chr8_1 exon 87296148 87296208 87296148 ID=Msa1222900-mRNA-1:exon:31567;Parent=Msa1222900-mRNA-1
chr8_1 exon 87296290 87296396 87296290 ID=Msa1222900-mRNA-1:exon:31566;Parent=Msa1222900-mRNA-1
chr8_1 exon 87296619 87296723 87296619 ID=Msa1222900-mRNA-1:exon:31565;Parent=Msa1222900-mRNA-1
chr8_1 exon 87296845 87296931 87296845 ID=Msa1222900-mRNA-1:exon:31564;Parent=Msa1222900-mRNA-1
chr8_1 exon 87297126 87297206 87297126 ID=Msa1222900-mRNA-1:exon:31563;Parent=Msa1222900-mRNA-1
chr8_1 exon 87297615 87297687 87297615 ID=Msa1222900-mRNA-1:exon:31562;Parent=Msa1222900-mRNA-1
chr8_1 exon 87297839 87297951 87297839 ID=Msa1222900-mRNA-1:exon:31561;Parent=Msa1222900-mRNA-1
chr8_1 exon 87298041 87298134 87298041 ID=Msa1222900-mRNA-1:exon:31560;Parent=Msa1222900-mRNA-1
chr8_1 exon 87298248 87298303 87298248 ID=Msa1222900-mRNA-1:exon:31559;Parent=Msa1222900-mRNA-1
chr8_1 exon 87298408 87298491 87298408 ID=Msa1222900-mRNA-1:exon:31558;Parent=Msa1222900-mRNA-1
chr8_1 exon 87298632 87298724 87298632 ID=Msa1222900-mRNA-1:exon:31557;Parent=Msa1222900-mRNA-1
chr8_1 exon 87298865 87299038 87298865 ID=Msa1222900-mRNA-1:exon:31556;Parent=Msa1222900-mRNA-1
chr8_1 exon 87299410 87299523 87299410 ID=Msa1222900-mRNA-1:exon:31555;Parent=Msa1222900-mRNA-1
chr8_1 exon 87300352 87300853 87300352 ID=Msa1222900-mRNA-1:exon:31554;Parent=Msa1222900-mRNA-1
chr8_1 exon 87300902 87300914 87300902 ID=Msa1222900-mRNA-1:exon:31553;Parent=Msa1222900-mRNA-1
chr8_1 five_prime_UTR 87300902 87300914 87300902 ID=Msa1222900-mRNA-1:five_prime_utr;Parent=Msa1222900-mRNA-1
chr8_1 five_prime_UTR 87300574 87300853 87300574 ID=Msa1222900-mRNA-1:five_prime_utr;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87300352 87300573 87300352 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87299410 87299523 87299410 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87298865 87299038 87298865 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87298632 87298724 87298632 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87298408 87298491 87298408 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87298248 87298303 87298248 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87298041 87298134 87298041 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87297839 87297951 87297839 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87297615 87297687 87297615 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87297126 87297206 87297126 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87296845 87296931 87296845 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87296619 87296723 87296619 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87296290 87296396 87296290 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87296148 87296208 87296148 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 CDS 87295859 87295960 87295859 ID=Msa1222900-mRNA-1:cds;Parent=Msa1222900-mRNA-1
chr8_1 three_prime_UTR 87295573 87295858 87295573 ID=Msa1222900-mRNA-1:three_prime_utr;Parent=Msa1222900-mRNA-1
Gene Sequence

>Msa1222900

ATGGCAGTCTCTGCCAGTGGTCAGATAATGCTATCATCTACCGTTCAGCTACGTGAGCCAGGAATGGTGACCAGTAGAAACTTGAAGGTTGTGAAGTTTTGTAATGGAGAAATGATGGGACGAAAGATTGAGCTTCATGCTGCTACCAATGGTTGCACCAAGAGTGTTACTAGGAAAAATATATCCATGTCTCTCACTGCTGATGTGGCTAGCGAATCCAAGTTGAAAAATGCAGATGTGGAAAAAAGGGATCCAAGTACAGTCGTGGCAGTTATACTTGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTAACTAAGCGACGAGCAAAGCCTGCTGTTCCAATTGGAGGTGCTTATAGGCTGATTGATGTGCCAATGAGTAACTGCATCAATAGTGGGATCAACAAAGTGTATATTCTCACTCAGTTTAATTCAGCCTCACTCAACAGACATATTGCACGTGCTTACAACTCCGGTACTGGAGTCACTTTCGGAGATGGCTATGTCGAGGTTCTTGCTGCAACTCAAACTCCAGGGGAACAAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGCGGCAGTTTCACTGGCTCTTTGAGGATCCCAGGAGCAAGGATATTGAGGATGTTTTGATTCTTTCTGGGGATCACCTCTACCGTATGGACTATATGGACTTTGTTAGAGATCATCGAGAGAGCGGTGCAGATATCACTCTTTCTTGTCTGCCAATGGATGACAGCCGCGCCTCAGATTTCGGTCTGATGAAGATTGACAACAAAGGAAGGATCCTTTCATTTAGTGAAAAGCCTAAAGGAGCAGAGCTCAAAGCAATGCAAGTGGATACAACCGTTCTTGGTCTTTCGAAGGATGAAGCTCTAGAAAAACCATATATTGCTTCGATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTAAGATGGCGCTTTCCAACTGCAAATGACTTTGGATCAGAGGTCATTCCTGCCTCAGCTAAAGAATTTTACATGAAGGCTTATCTCTTCAACGATTACTGGGAGGACATAGGTACCATCAGATCATTCTTTGAGGCAAATCTAGCCCTCACTGAGCATCCATCCAAGTTTAGCTTTTACGATGCAGCAAAACCTATGTACACATCAAGGAGAAATTTACCACCATCGAAGATTGACAATAGCAAGCTCGTTGATTCAATTATATCACATGGAAGCTTCGTGAATAATGCCTTCATAGAGCATAGTGTAGTTGGAATCAGATCAAGAATAAACTCAAATGTTCATTTAAAGGACACAGTGATGCTTGGAGCTGATTACTATGAAACTGAGGCAGAAGTGGCAGCACAGTTAGCTGAGGGAAGAGTTCCAATAGGAATAGGAGAAAACACCAAAATCAAAGACTGTATTATTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAACTCAGAGGGAGTACAAGAGGCTGATAGATCATCAGAAGGGTTTTACATCCGTTCCGGCGTCACTGTTGTATTGAAAAATTCAACAATTGAAGACGGGCTCGTCATATAA

Protein sequence

>Msa1222900

MAVSASGQIMLSSTVQLREPGMVTSRNLKVVKFCNGEMMGRKIELHAATNGCTKSVTRKNISMSLTADVASESKLKNADVEKRDPSTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVRDHRESGADITLSCLPMDDSRASDFGLMKIDNKGRILSFSEKPKGAELKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAKEFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAKPMYTSRRNLPPSKIDNSKLVDSIISHGSFVNNAFIEHSVVGIRSRINSNVHLKDTVMLGADYYETEAEVAAQLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTVVLKNSTIEDGLVI*