AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375650 MtrunA17_Chr3g0146001 94.514 401 6 3 1 393 1 393 0.0 764
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375650 AT4G35250.1 93.051 331 23 0 63 393 65 395 0.0 650

Find 126 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATAAATTTAAGATTAT+TGG 0.101403 tig0019730:-87517 Msa1375650:five_prime_UTR
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 tig0019730:-86604 Msa1375650:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 tig0019730:+85602 None:intergenic
AGGTAATGTTGTGGGTATTT+AGG 0.240625 tig0019730:-85469 Msa1375650:three_prime_UTR
GAGAACTTCCTCCGTGATTC+TGG 0.246351 tig0019730:-86737 Msa1375650:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 tig0019730:-87008 Msa1375650:CDS
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 tig0019730:-87009 Msa1375650:CDS
AGTATCCATGTAAGCGATTC+TGG 0.290196 tig0019730:+86525 None:intergenic
AGTATACTTGTTGGCCTAAC+AGG 0.305613 tig0019730:+87130 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.307705 tig0019730:-86356 Msa1375650:CDS
CTGACGAGTGAGTCTTAAAA+TGG 0.323717 tig0019730:+86247 None:intergenic
TGGCTGTTGGTAACCTCATC+AGG 0.328407 tig0019730:+87335 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 tig0019730:-87103 Msa1375650:CDS
CACTTCTCACTATGTACATT+TGG 0.339648 tig0019730:+85297 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.341313 tig0019730:-85443 Msa1375650:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 tig0019730:-87087 Msa1375650:CDS
CAGGATGTTTGTCGCAGTTA+TGG 0.353588 tig0019730:+86792 None:intergenic
TACATTAGAGAAGTATTTGC+AGG 0.361917 tig0019730:-85589 Msa1375650:CDS
ACTATTCCTGCTACATTAGT+TGG 0.362432 tig0019730:-86947 Msa1375650:CDS
TGGAAGAAGGATTATTAGAG+TGG 0.364586 tig0019730:-87230 Msa1375650:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 tig0019730:-85402 Msa1375650:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 tig0019730:-87104 Msa1375650:CDS
GCCTATCAAAACAGTTGATT+GGG 0.393639 tig0019730:-86882 Msa1375650:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 tig0019730:-86302 Msa1375650:CDS
TCAGAGAGGGCGGTGAATCT+TGG 0.400193 tig0019730:-87163 Msa1375650:CDS
AGCCTATCAAAACAGTTGAT+TGG 0.402139 tig0019730:-86883 Msa1375650:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 tig0019730:+86315 None:intergenic
AGGATACGACGTCCGGTGTC+TGG 0.418347 tig0019730:-87050 Msa1375650:CDS
ATCTCCATGAGTGGGACCTC+AGG 0.428640 tig0019730:+86773 None:intergenic
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 tig0019730:-87112 Msa1375650:CDS
CACATTGTCATCCGTTTATG+TGG 0.441513 tig0019730:-86707 Msa1375650:CDS
AAATATCTGATTGTTTCGAC+TGG 0.443973 tig0019730:+85523 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 tig0019730:+86581 None:intergenic
ACTGTTATTGACTGCGCCAC+TGG 0.449162 tig0019730:-86917 Msa1375650:CDS
CTTGCATGAAACCACATAAA+CGG 0.459989 tig0019730:+86696 None:intergenic
ATCCGTTGATGAAAGATAAG+AGG 0.462994 tig0019730:-87493 Msa1375650:five_prime_UTR
CTGTAGTTACATTAGCATCT+TGG 0.467915 tig0019730:+86279 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 tig0019730:-87144 Msa1375650:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 tig0019730:-85477 Msa1375650:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 tig0019730:-85147 Msa1375650:three_prime_UTR
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 tig0019730:+87139 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 tig0019730:+86531 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 tig0019730:-86842 Msa1375650:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 tig0019730:+87022 None:intergenic
ATAATGATCAGGAGGAGTAT+TGG 0.492930 tig0019730:-87434 Msa1375650:five_prime_UTR
GACGTGGCAAAATAATGATC+AGG 0.496951 tig0019730:-87445 Msa1375650:five_prime_UTR
GAACATATTGAAGAAGTTGA+AGG 0.506295 tig0019730:-85556 Msa1375650:CDS
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 tig0019730:+87016 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 tig0019730:-86843 Msa1375650:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 tig0019730:-86530 Msa1375650:CDS
ACGACGTCCGGTGTCTGGTA+AGG 0.516950 tig0019730:-87045 Msa1375650:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 tig0019730:+86530 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 tig0019730:-87077 Msa1375650:CDS
TCCGGTGTCTGGTAAGGCCG+AGG 0.517171 tig0019730:-87039 Msa1375650:CDS
GTCCTCCTCACCACCCTACC+AGG 0.521131 tig0019730:+87310 None:intergenic
TGAACTCCAACTAATGTAGC+AGG 0.522361 tig0019730:+86941 None:intergenic
AACTCAACAAAATGAGTACT+AGG 0.522968 tig0019730:+87262 None:intergenic
CCTCACCACCCTACCAGGTG+TGG 0.525876 tig0019730:+87315 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 tig0019730:+87121 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 tig0019730:-86201 Msa1375650:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 tig0019730:-87007 Msa1375650:CDS
GAGCCACGGGGACTTTGGGA+AGG 0.531810 tig0019730:-87099 Msa1375650:CDS
TGAGTACTAGGATAAAGAAC+AGG 0.532816 tig0019730:+87274 None:intergenic
GGAAGAAGGATTATTAGAGT+GGG 0.533884 tig0019730:-87229 Msa1375650:CDS
ACACAATGTAATCACCTCTT+GGG 0.536741 tig0019730:+86316 None:intergenic
ATGTTTGTCGCAGTTATGGA+TGG 0.537280 tig0019730:+86796 None:intergenic
ACATCCTGAGGTCCCACTCA+TGG 0.537298 tig0019730:-86777 Msa1375650:CDS
CAATCACGAAGGAAGTCAGC+TGG 0.537462 tig0019730:+87010 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 tig0019730:-87113 Msa1375650:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 tig0019730:+85639 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 tig0019730:+86953 None:intergenic
CCACACCTGGTAGGGTGGTG+AGG 0.551319 tig0019730:-87315 Msa1375650:CDS
GTGAGTCTTAAAATGGAGAC+AGG 0.552942 tig0019730:+86254 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 tig0019730:+86529 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 tig0019730:+85153 None:intergenic
CCCCTCTTATCTTTCATCAA+CGG 0.558108 tig0019730:+87491 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 tig0019730:+86901 None:intergenic
TCCGTTGATGAAAGATAAGA+GGG 0.567847 tig0019730:-87492 Msa1375650:five_prime_UTR
GCGGAGACATACAACCTACT+TGG 0.567860 tig0019730:-85633 Msa1375650:CDS
ACCAACAGCCACACCTGGTA+GGG 0.570641 tig0019730:-87323 Msa1375650:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 tig0019730:+85524 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 tig0019730:-86303 Msa1375650:CDS
ACCCTACCAGGTGTGGCTGT+TGG 0.574945 tig0019730:+87322 None:intergenic
AATCGCTTACATGGATACTC+AGG 0.576431 tig0019730:-86521 Msa1375650:intron
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 tig0019730:-86343 Msa1375650:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 tig0019730:-87083 Msa1375650:CDS
AGGGCGGTGAATCTTGGACC+AGG 0.579063 tig0019730:-87157 Msa1375650:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 tig0019730:-86310 Msa1375650:CDS
CTTTGGTATCGACACCAAGT+AGG 0.582966 tig0019730:+85619 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 tig0019730:-87057 Msa1375650:CDS
AAAGATAAGAGGGGTGCGGT+AGG 0.586869 tig0019730:-87482 Msa1375650:five_prime_UTR
TGAAAATGGCGACCCTGATG+AGG 0.599647 tig0019730:-87348 Msa1375650:CDS
ATCAAAACAGTTGATTGGGA+AGG 0.599943 tig0019730:-86878 Msa1375650:CDS
AGGTTACCAACAGCCACACC+TGG 0.599991 tig0019730:-87328 Msa1375650:CDS
GGTGGTGAGGAGGACGAGAG+AGG 0.604065 tig0019730:-87302 Msa1375650:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 tig0019730:-87121 Msa1375650:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 tig0019730:-85478 Msa1375650:three_prime_UTR
AACAGCCACACCTGGTAGGG+TGG 0.616669 tig0019730:-87320 Msa1375650:CDS
TACCAACAGCCACACCTGGT+AGG 0.624838 tig0019730:-87324 Msa1375650:CDS
ATCCATGTAAGCGATTCTGG+TGG 0.627734 tig0019730:+86528 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 tig0019730:+86764 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 tig0019730:-87084 Msa1375650:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 tig0019730:-87070 Msa1375650:CDS
TGTGATTGAGTCCAGAATCA+CGG 0.632628 tig0019730:+86726 None:intergenic
TAGGCCAACAAGTATACTTG+TGG 0.636061 tig0019730:-87125 Msa1375650:CDS
GGCTGTTGGTAACCTCATCA+GGG 0.639067 tig0019730:+87336 None:intergenic
GATGAAAGATAAGAGGGGTG+CGG 0.639836 tig0019730:-87486 Msa1375650:five_prime_UTR
CACCTGGTAGGGTGGTGAGG+AGG 0.643631 tig0019730:-87312 Msa1375650:CDS
ATGATTTGTAATTGCATACG+AGG 0.645440 tig0019730:-85489 Msa1375650:three_prime_UTR
GCCTCGGCCTTACCAGACAC+CGG 0.648299 tig0019730:+87038 None:intergenic
TAGCAATAGCAATTCAGAGA+GGG 0.651939 tig0019730:-87176 Msa1375650:CDS
AATACTTGATCTCCATGAGT+GGG 0.653716 tig0019730:+86765 None:intergenic
GGGCGGTGAATCTTGGACCA+GGG 0.653844 tig0019730:-87156 Msa1375650:CDS
CAATAGCAATTCAGAGAGGG+CGG 0.659474 tig0019730:-87173 Msa1375650:CDS
GTGGCAAAATAATGATCAGG+AGG 0.665461 tig0019730:-87442 Msa1375650:five_prime_UTR
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 tig0019730:+87096 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 tig0019730:-86330 Msa1375650:CDS
GGTAGCAGTAAAAGTAGACG+TGG 0.693126 tig0019730:-87461 Msa1375650:five_prime_UTR
TAACTGCGACAAACATCCTG+AGG 0.699487 tig0019730:-86789 Msa1375650:CDS
GTATTGGATAGAATGAACGA+AGG 0.702781 tig0019730:-87418 Msa1375650:five_prime_UTR
TCTTGGGTAGTCCACGCACG+AGG 0.707865 tig0019730:+86332 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 tig0019730:+86999 None:intergenic
ATAGCAATAGCAATTCAGAG+AGG 0.747554 tig0019730:-87177 Msa1375650:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 tig0019730:-87111 Msa1375650:CDS
CCGTTGATGAAAGATAAGAG+GGG 0.799666 tig0019730:-87491 Msa1375650:five_prime_UTR
GATTGAGTCCAGAATCACGG+AGG 0.804340 tig0019730:+86729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG - tig0019730:86872-86891 Msa1375650:CDS 15.0%
!! AATAAAAAAACAATATACAC+CGG + tig0019730:87187-87206 None:intergenic 15.0%
!!! TATAAATTAACCAATGTTTT+TGG + tig0019730:87250-87269 None:intergenic 15.0%
!! TTATTTCCGAAAAATGAAAA+TGG - tig0019730:85246-85265 Msa1375650:three_prime_UTR 20.0%
!! TTACGAAATGAAAAAATCAA+CGG - tig0019730:86231-86250 Msa1375650:CDS 20.0%
!! CTCTAATGTAATTATATCTT+TGG + tig0019730:87009-87028 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG - tig0019730:87194-87213 Msa1375650:CDS 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG - tig0019730:87195-87214 Msa1375650:CDS 20.0%
! ATGAATGAAGTGATTGATTA+AGG + tig0019730:86161-86180 None:intergenic 25.0%
!!! GTTGATTTTTTCATTTCGTA+AGG + tig0019730:86232-86251 None:intergenic 25.0%
!! TGATTGATAAAGCATTAAAC+AGG + tig0019730:86478-86497 None:intergenic 25.0%
! AAAAAGAAGAAGAAGGATTT+GGG + tig0019730:86533-86552 None:intergenic 25.0%
! AAAAAAGAAGAAGAAGGATT+TGG + tig0019730:86534-86553 None:intergenic 25.0%
! CATACAAAAAAAGAAGAAGA+AGG + tig0019730:86540-86559 None:intergenic 25.0%
!! TTTTTGTTACATTGCTTGAA+TGG - tig0019730:86581-86600 Msa1375650:CDS 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG + tig0019730:86797-86816 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG + tig0019730:86801-86820 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG + tig0019730:86861-86880 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG - tig0019730:86875-86894 Msa1375650:CDS 25.0%
! GACACAATTCATAAATACTT+AGG + tig0019730:87458-87477 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG - tig0019730:87461-87480 Msa1375650:five_prime_UTR 25.0%
AACTCAACAAAATGAGTACT+AGG + tig0019730:85349-85368 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG - tig0019730:85355-85374 Msa1375650:three_prime_UTR 30.0%
TATTCAATGTGCTAAAGCAA+TGG - tig0019730:85765-85784 Msa1375650:intron 30.0%
ATTCAATGTGCTAAAGCAAT+GGG - tig0019730:85766-85785 Msa1375650:intron 30.0%
ACAATTCATAATTCCAATGC+AGG - tig0019730:85994-86013 Msa1375650:intron 30.0%
CAATTCATAATTCCAATGCA+GGG - tig0019730:85995-86014 Msa1375650:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG + tig0019730:86043-86062 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG - tig0019730:86044-86063 Msa1375650:intron 30.0%
TCTCGAAGAAAAATCTGTTT+GGG - tig0019730:86045-86064 Msa1375650:intron 30.0%
! TTGATAAAGCATTAAACAGG+TGG + tig0019730:86475-86494 None:intergenic 30.0%
! CTCATTAATACTTGTTGCAT+TGG - tig0019730:86499-86518 Msa1375650:intron 30.0%
TGCATTACTACATTTCCATT+GGG - tig0019730:86651-86670 Msa1375650:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG + tig0019730:86763-86782 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG + tig0019730:86764-86783 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG - tig0019730:86770-86789 Msa1375650:CDS 30.0%
CATGCCTATAGTTGATTATA+CGG - tig0019730:86903-86922 Msa1375650:CDS 30.0%
ATGCCTATAGTTGATTATAC+GGG - tig0019730:86904-86923 Msa1375650:CDS 30.0%
TTTCCCGTATAATCAACTAT+AGG + tig0019730:86910-86929 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG - tig0019730:86917-86936 Msa1375650:CDS 30.0%
!! TACATTAGAGAAGTATTTGC+AGG - tig0019730:87019-87038 Msa1375650:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG - tig0019730:87052-87071 Msa1375650:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG + tig0019730:87087-87106 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG + tig0019730:87088-87107 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG - tig0019730:87119-87138 Msa1375650:CDS 30.0%
TTATTCTTAAATACGCTTGC+CGG - tig0019730:87165-87184 Msa1375650:CDS 30.0%
GTGTATTCATCCAAAAACAT+TGG - tig0019730:87237-87256 Msa1375650:CDS 30.0%
! ATCCGTTGATGAAAGATAAG+AGG - tig0019730:85115-85134 Msa1375650:three_prime_UTR 35.0%
! TCCGTTGATGAAAGATAAGA+GGG - tig0019730:85116-85135 Msa1375650:three_prime_UTR 35.0%
! ATAATGATCAGGAGGAGTAT+TGG - tig0019730:85174-85193 Msa1375650:three_prime_UTR 35.0%
GTATTGGATAGAATGAACGA+AGG - tig0019730:85190-85209 Msa1375650:three_prime_UTR 35.0%
TGAGTACTAGGATAAAGAAC+AGG + tig0019730:85337-85356 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG - tig0019730:85358-85377 Msa1375650:three_prime_UTR 35.0%
TGGAAGAAGGATTATTAGAG+TGG - tig0019730:85378-85397 Msa1375650:three_prime_UTR 35.0%
GGAAGAAGGATTATTAGAGT+GGG - tig0019730:85379-85398 Msa1375650:three_prime_UTR 35.0%
ATAGCAATAGCAATTCAGAG+AGG - tig0019730:85431-85450 Msa1375650:three_prime_UTR 35.0%
TAGCAATAGCAATTCAGAGA+GGG - tig0019730:85432-85451 Msa1375650:three_prime_UTR 35.0%
ACTATTCCTGCTACATTAGT+TGG - tig0019730:85661-85680 Msa1375650:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG - tig0019730:85725-85744 Msa1375650:intron 35.0%
GCCTATCAAAACAGTTGATT+GGG - tig0019730:85726-85745 Msa1375650:intron 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG + tig0019730:85730-85749 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG - tig0019730:85730-85749 Msa1375650:intron 35.0%
AATACTTGATCTCCATGAGT+GGG + tig0019730:85846-85865 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG + tig0019730:85915-85934 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG - tig0019730:86046-86065 Msa1375650:intron 35.0%
GGTAAACTTCTTACATTTGC+TGG - tig0019730:86252-86271 Msa1375650:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG + tig0019730:86295-86314 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG + tig0019730:86332-86351 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG + tig0019730:86391-86410 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG + tig0019730:86392-86411 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG - tig0019730:86407-86426 Msa1375650:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG - tig0019730:86650-86669 Msa1375650:intron 35.0%
GCATTACTACATTTCCATTG+GGG - tig0019730:86652-86671 Msa1375650:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG + tig0019730:86754-86773 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG - tig0019730:86752-86771 Msa1375650:CDS 35.0%
ATATGCACTAGGAATCTGTT+TGG + tig0019730:86850-86869 None:intergenic 35.0%
AGGTAATGTTGTGGGTATTT+AGG - tig0019730:87139-87158 Msa1375650:CDS 35.0%
CACTTCTCACTATGTACATT+TGG + tig0019730:87314-87333 None:intergenic 35.0%
CCCCTCTTATCTTTCATCAA+CGG + tig0019730:85120-85139 None:intergenic 40.0%
! CCGTTGATGAAAGATAAGAG+GGG - tig0019730:85117-85136 Msa1375650:three_prime_UTR 40.0%
GACGTGGCAAAATAATGATC+AGG - tig0019730:85163-85182 Msa1375650:three_prime_UTR 40.0%
GTGGCAAAATAATGATCAGG+AGG - tig0019730:85166-85185 Msa1375650:three_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG + tig0019730:85255-85274 None:intergenic 40.0%
! AGTTTTGCAAAGGTGGAAGA+AGG - tig0019730:85365-85384 Msa1375650:three_prime_UTR 40.0%
! AGTATACTTGTTGGCCTAAC+AGG + tig0019730:85481-85500 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG - tig0019730:85483-85502 Msa1375650:three_prime_UTR 40.0%
CCAACCACAAGTATACTTGT+TGG + tig0019730:85490-85509 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG - tig0019730:85487-85506 Msa1375650:three_prime_UTR 40.0%
AATGTAGCAGGAATAGTCTC+AGG + tig0019730:85658-85677 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG + tig0019730:85670-85689 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG + tig0019730:85717-85736 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG + tig0019730:85721-85740 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG + tig0019730:85815-85834 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG + tig0019730:85847-85866 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG + tig0019730:85885-85904 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG - tig0019730:85901-85920 Msa1375650:intron 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG - tig0019730:86004-86023 Msa1375650:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG + tig0019730:86086-86105 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG - tig0019730:86087-86106 Msa1375650:intron 40.0%
CTATATCCTAAAAGCAGCAG+AGG + tig0019730:86191-86210 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG + tig0019730:86296-86315 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG - tig0019730:86298-86317 Msa1375650:CDS 40.0%
GTGAGTCTTAAAATGGAGAC+AGG + tig0019730:86357-86376 None:intergenic 40.0%
CTGACGAGTGAGTCTTAAAA+TGG + tig0019730:86364-86383 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG - tig0019730:86382-86401 Msa1375650:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG - tig0019730:86419-86438 Msa1375650:intron 40.0%
GCATTAAACAGGTGGAGATT+AGG + tig0019730:86467-86486 None:intergenic 40.0%
! ACTACTAGAGCAGCTGATTT+GGG + tig0019730:86617-86636 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG + tig0019730:86686-86705 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG - tig0019730:86953-86972 Msa1375650:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG - tig0019730:86956-86975 Msa1375650:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG - tig0019730:87130-87149 Msa1375650:CDS 40.0%
TGCATACGAGGTAATGTTGT+GGG - tig0019730:87131-87150 Msa1375650:CDS 40.0%
TTCTTACGTGGGCTTACAAT+TGG - tig0019730:87206-87225 Msa1375650:CDS 40.0%
!!! GGGCTTACAATTGGTTTTGT+TGG - tig0019730:87215-87234 Msa1375650:CDS 40.0%
! GTCTTTTAAGCATGCGATAC+AGG + tig0019730:87436-87455 None:intergenic 40.0%
GATGAAAGATAAGAGGGGTG+CGG - tig0019730:85122-85141 Msa1375650:three_prime_UTR 45.0%
GGTAGCAGTAAAAGTAGACG+TGG - tig0019730:85147-85166 Msa1375650:three_prime_UTR 45.0%
CAATAGCAATTCAGAGAGGG+CGG - tig0019730:85435-85454 Msa1375650:three_prime_UTR 45.0%
TATACTTGTGGTTGGAGCCA+CGG - tig0019730:85495-85514 Msa1375650:three_prime_UTR 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG - tig0019730:85521-85540 Msa1375650:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG - tig0019730:85600-85619 Msa1375650:CDS 45.0%
CAGGATGTTTGTCGCAGTTA+TGG + tig0019730:85819-85838 None:intergenic 45.0%
TAACTGCGACAAACATCCTG+AGG - tig0019730:85819-85838 Msa1375650:intron 45.0%
CGAGAATAGGAACAGCATAC+TGG + tig0019730:86030-86049 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG + tig0019730:86082-86101 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG + tig0019730:86083-86102 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG - tig0019730:86305-86324 Msa1375650:CDS 45.0%
GACTACTAGAGCAGCTGATT+TGG + tig0019730:86618-86637 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG + tig0019730:86679-86698 None:intergenic 45.0%
! GCATCGACATGAGTGGATTT+GGG + tig0019730:86699-86718 None:intergenic 45.0%
! TGCATCGACATGAGTGGATT+TGG + tig0019730:86700-86719 None:intergenic 45.0%
! TTGATGTGCATCGACATGAG+TGG + tig0019730:86706-86725 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG + tig0019730:86784-86803 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG + tig0019730:86992-87011 None:intergenic 45.0%
!!! ATAAATAAATTTAAGATTAT+TGG - tig0019730:85091-85110 Msa1375650:three_prime_UTR 5.0%
! AAAGATAAGAGGGGTGCGGT+AGG - tig0019730:85126-85145 Msa1375650:three_prime_UTR 50.0%
TGAAAATGGCGACCCTGATG+AGG - tig0019730:85260-85279 Msa1375650:three_prime_UTR 50.0%
!! GGCTGTTGGTAACCTCATCA+GGG + tig0019730:85275-85294 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG + tig0019730:85276-85295 None:intergenic 50.0%
ATACTTGTGGTTGGAGCCAC+GGG - tig0019730:85496-85515 Msa1375650:exon 50.0%
CAATCACGAAGGAAGTCAGC+TGG + tig0019730:85601-85620 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG - tig0019730:85599-85618 Msa1375650:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG - tig0019730:85601-85620 Msa1375650:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG - tig0019730:85691-85710 Msa1375650:intron 50.0%
GAGAACTTCCTCCGTGATTC+TGG - tig0019730:85871-85890 Msa1375650:intron 50.0%
GATTGAGTCCAGAATCACGG+AGG + tig0019730:85882-85901 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG + tig0019730:86010-86029 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG + tig0019730:86080-86099 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG + tig0019730:86081-86100 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG - tig0019730:86182-86201 Msa1375650:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG - tig0019730:86306-86325 Msa1375650:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG + tig0019730:86669-86688 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG - tig0019730:86667-86686 Msa1375650:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG + tig0019730:86972-86991 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG - tig0019730:86975-86994 Msa1375650:CDS 50.0%
AGGTTACCAACAGCCACACC+TGG - tig0019730:85280-85299 Msa1375650:three_prime_UTR 55.0%
TACCAACAGCCACACCTGGT+AGG - tig0019730:85284-85303 Msa1375650:three_prime_UTR 55.0%
ACCAACAGCCACACCTGGTA+GGG - tig0019730:85285-85304 Msa1375650:three_prime_UTR 55.0%
TCAGAGAGGGCGGTGAATCT+TGG - tig0019730:85445-85464 Msa1375650:three_prime_UTR 55.0%
TTGGACCAGGGACACCTGTT+AGG - tig0019730:85464-85483 Msa1375650:three_prime_UTR 55.0%
TACTTGTGGTTGGAGCCACG+GGG - tig0019730:85497-85516 Msa1375650:exon 55.0%
TGGGAAGGCAGATTGTTCGG+AGG - tig0019730:85524-85543 Msa1375650:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG - tig0019730:85525-85544 Msa1375650:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG - tig0019730:85551-85570 Msa1375650:CDS 55.0%
CAGTTGCTCCCCAATCACGA+AGG + tig0019730:85612-85631 None:intergenic 55.0%
ACATCCTGAGGTCCCACTCA+TGG - tig0019730:85831-85850 Msa1375650:intron 55.0%
ATCTCCATGAGTGGGACCTC+AGG + tig0019730:85838-85857 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG - tig0019730:86078-86097 Msa1375650:intron 55.0%
ACCCTACCAGGTGTGGCTGT+TGG + tig0019730:85289-85308 None:intergenic 60.0%
AACAGCCACACCTGGTAGGG+TGG - tig0019730:85288-85307 Msa1375650:three_prime_UTR 60.0%
AGGGCGGTGAATCTTGGACC+AGG - tig0019730:85451-85470 Msa1375650:three_prime_UTR 60.0%
GGGCGGTGAATCTTGGACCA+GGG - tig0019730:85452-85471 Msa1375650:three_prime_UTR 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG + tig0019730:85472-85491 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG - tig0019730:85505-85524 Msa1375650:exon 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG - tig0019730:85531-85550 Msa1375650:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG - tig0019730:85558-85577 Msa1375650:CDS 60.0%
ACGACGTCCGGTGTCTGGTA+AGG - tig0019730:85563-85582 Msa1375650:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG + tig0019730:85589-85608 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG + tig0019730:85595-85614 None:intergenic 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG - tig0019730:86265-86284 Msa1375650:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG + tig0019730:86279-86298 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG - tig0019730:86278-86297 Msa1375650:CDS 60.0%
CCTCACCACCCTACCAGGTG+TGG + tig0019730:85296-85315 None:intergenic 65.0%
CCACACCTGGTAGGGTGGTG+AGG - tig0019730:85293-85312 Msa1375650:three_prime_UTR 65.0%
CACCTGGTAGGGTGGTGAGG+AGG - tig0019730:85296-85315 Msa1375650:three_prime_UTR 65.0%
GTCCTCCTCACCACCCTACC+AGG + tig0019730:85301-85320 None:intergenic 65.0%
GGTGGTGAGGAGGACGAGAG+AGG - tig0019730:85306-85325 Msa1375650:three_prime_UTR 65.0%
GGTTGGAGCCACGGGGACTT+TGG - tig0019730:85504-85523 Msa1375650:exon 65.0%
! GAGCCACGGGGACTTTGGGA+AGG - tig0019730:85509-85528 Msa1375650:exon 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG + tig0019730:85515-85534 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG - tig0019730:85538-85557 Msa1375650:CDS 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG - tig0019730:85569-85588 Msa1375650:CDS 65.0%
GCCTCGGCCTTACCAGACAC+CGG + tig0019730:85573-85592 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG + tig0019730:85710-85729 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019730 gene 85084 87546 85084 ID=Msa1375650;Name=Msa1375650
tig0019730 mRNA 85084 87546 85084 ID=Msa1375650-mRNA-1;Parent=Msa1375650;Name=Msa1375650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|1|1|4|431|393
tig0019730 exon 85084 85691 85084 ID=Msa1375650-mRNA-1:exon:4653;Parent=Msa1375650-mRNA-1
tig0019730 exon 86190 86426 86190 ID=Msa1375650-mRNA-1:exon:4652;Parent=Msa1375650-mRNA-1
tig0019730 exon 86522 86614 86522 ID=Msa1375650-mRNA-1:exon:4651;Parent=Msa1375650-mRNA-1
tig0019730 exon 86697 87546 86697 ID=Msa1375650-mRNA-1:exon:4650;Parent=Msa1375650-mRNA-1
tig0019730 five_prime_UTR 87372 87546 87372 ID=Msa1375650-mRNA-1:five_prime_utr;Parent=Msa1375650-mRNA-1
tig0019730 CDS 86697 87371 86697 ID=Msa1375650-mRNA-1:cds;Parent=Msa1375650-mRNA-1
tig0019730 CDS 86522 86614 86522 ID=Msa1375650-mRNA-1:cds;Parent=Msa1375650-mRNA-1
tig0019730 CDS 86190 86426 86190 ID=Msa1375650-mRNA-1:cds;Parent=Msa1375650-mRNA-1
tig0019730 CDS 85515 85691 85515 ID=Msa1375650-mRNA-1:cds;Parent=Msa1375650-mRNA-1
tig0019730 three_prime_UTR 85084 85514 85084 ID=Msa1375650-mRNA-1:three_prime_utr;Parent=Msa1375650-mRNA-1
Gene Sequence

>Msa1375650

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGAGGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTACTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAACGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCATTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa1375650

MKMATLMRLPTATPGRVVRRTREAFPVLYPSTHFVEFCKGGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSILRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*