AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632420 MtrunA17_Chr4g0010271 100.000 219 0 0 1 219 1 219 5.99e-166 456
Msa0632420 MtrunA17_Chr1g0169861 78.995 219 46 0 1 219 51 269 2.50e-138 388
Msa0632420 MtrunA17_Chr7g0237561 84.018 219 35 0 1 219 1 219 1.72e-129 363
Msa0632420 MtrunA17_Chr2g0296021 71.233 219 63 0 1 219 1 219 1.10e-122 346
Msa0632420 MtrunA17_Chr4g0043521 79.275 193 40 0 3 195 5 197 3.93e-121 342
Msa0632420 MtrunA17_Chr2g0291651 74.419 215 55 0 2 216 6 220 5.40e-115 327
Msa0632420 MtrunA17_Chr7g0237521 75.385 195 48 0 1 195 1 195 1.39e-111 318
Msa0632420 MtrunA17_Chr1g0210521 56.303 238 85 1 1 219 1 238 7.10e-102 294
Msa0632420 MtrunA17_Chr4g0010211 95.370 108 5 0 64 171 3 110 1.90e-71 213
Msa0632420 MtrunA17_Chr1g0169851 69.178 146 30 1 57 187 8 153 4.04e-70 211
Msa0632420 MtrunA17_Chr5g0441741 39.151 212 126 3 6 216 3 212 1.50e-49 160
Msa0632420 MtrunA17_Chr4g0026121 36.279 215 134 3 5 218 2 214 4.33e-46 152
Msa0632420 MtrunA17_Chr4g0064371 33.180 217 136 5 6 216 3 216 6.54e-41 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632420 AT1G04760.2 80.365 219 43 0 1 219 1 219 2.25e-133 374
Msa0632420 AT1G04760.1 80.365 219 43 0 1 219 1 219 2.25e-133 374
Msa0632420 AT1G04750.1 83.105 219 37 0 1 219 1 219 3.29e-129 363
Msa0632420 AT2G32670.1 82.192 219 39 0 1 219 66 284 5.30e-129 365
Msa0632420 AT2G33120.1 83.105 219 37 0 1 219 1 219 1.24e-128 362
Msa0632420 AT2G33120.2 79.736 227 38 1 1 219 1 227 2.07e-125 354
Msa0632420 AT3G54300.3 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa0632420 AT3G54300.2 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa0632420 AT3G54300.1 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa0632420 AT2G33110.1 67.580 219 67 1 1 219 1 215 5.90e-97 281
Msa0632420 AT4G15780.1 70.391 179 52 1 1 178 1 179 2.49e-95 276
Msa0632420 AT2G33110.2 69.753 162 49 0 1 162 1 162 3.45e-85 251
Msa0632420 AT1G04750.2 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa0632420 AT1G04750.4 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa0632420 AT1G04750.3 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa0632420 AT5G11150.1 40.553 217 123 5 5 218 2 215 7.85e-53 169
Msa0632420 AT5G11150.2 40.553 217 123 5 5 218 2 215 1.45e-52 169
Msa0632420 AT5G22360.1 37.963 216 130 3 5 218 2 215 7.00e-51 164
Msa0632420 AT4G32150.1 38.498 213 128 3 5 216 2 212 2.37e-48 158
Msa0632420 AT2G25340.1 37.850 214 128 4 5 216 2 212 1.59e-43 145
Msa0632420 AT2G33120.3 88.372 86 10 0 134 219 52 137 3.87e-36 124
Msa0632420 AT3G24890.2 53.191 94 38 2 113 200 14 107 5.20e-25 95.5
Msa0632420 AT3G24890.1 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa0632420 AT3G24890.4 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa0632420 AT3G24890.3 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa0632420 AT3G24890.5 53.125 64 26 1 113 176 14 73 2.18e-15 68.9

Find 66 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGTATTGTTTCATTTA+TGG 0.092767 4_3:-16384354 Msa0632420:three_prime_UTR
AAAAGTCTTAACAAAGAATT+TGG 0.112791 4_3:-16386644 Msa0632420:CDS
GAGAGAGGTGTTGTCAAATT+TGG 0.123414 4_3:+16388278 None:intergenic
CTAGAATTGTCACTACATTT+TGG 0.202308 4_3:-16384528 Msa0632420:three_prime_UTR
GGGAGAGAAGATTGAGGTTT+TGG 0.250137 4_3:-16385370 Msa0632420:CDS
CTGTGCAGGCACAAGATTTC+AGG 0.259480 4_3:-16384695 Msa0632420:intron
ACCACATCTTTCTTCTCAAC+TGG 0.279528 4_3:+16384661 None:intergenic
TGGAGTGATTGTTGGTGTTT+TGG 0.289779 4_3:-16384269 Msa0632420:three_prime_UTR
TTCAGCTTCCTCGTCGATAA+TGG 0.292725 4_3:-16387973 Msa0632420:CDS
GTTAGGAAGAGAAGTGAATA+AGG 0.297683 4_3:-16384424 Msa0632420:three_prime_UTR
GTTATTTGCAGGTTATTGAT+AGG 0.304636 4_3:-16385392 Msa0632420:intron
TGCATCTGCTCCTTCAACTT+TGG 0.346126 4_3:+16386535 None:intergenic
ATACGTTCAAGAAAAGCTAT+TGG 0.353729 4_3:+16386722 None:intergenic
GCAAGTTTGCTAACTTCCTC+TGG 0.381827 4_3:+16386496 None:intergenic
AACTCCCTGCTTCCAACAAC+AGG 0.382219 4_3:-16388023 Msa0632420:CDS
GTTGTAAGTAAACCTGTTGT+TGG 0.391494 4_3:+16388011 None:intergenic
ATCATTGATCTATAGCTTTG+TGG 0.397799 4_3:-16388124 Msa0632420:CDS
TTTGTTTATTAGACATTCAA+TGG 0.402021 4_3:-16384463 Msa0632420:three_prime_UTR
AACTGAGAACCTTCGCTCTC+AGG 0.417900 4_3:-16385340 Msa0632420:intron
TTATTTGCAGGTTATTGATA+GGG 0.435162 4_3:-16385391 Msa0632420:intron
GGCACAAGATTTCAGGCAGC+AGG 0.435566 4_3:-16384688 Msa0632420:CDS
GTAAACCTGTTGTTGGAAGC+AGG 0.445450 4_3:+16388018 None:intergenic
TTGTGAATTGTGATCATTCA+TGG 0.455075 4_3:-16388154 Msa0632420:exon
TGAAGTCAAAGGAGTTATGA+TGG 0.459537 4_3:-16386452 Msa0632420:CDS
GGAGAGAGATATAGAGAGAG+AGG 0.465161 4_3:+16388263 None:intergenic
AGCTTACTGTGTTGTGGCAG+TGG 0.485476 4_3:-16386765 Msa0632420:CDS
ATTGTTCTTTCTGTGTGCCA+TGG 0.487473 4_3:-16384579 Msa0632420:CDS
ATCTATAGCTTTGTGGCTCG+TGG 0.490761 4_3:-16388117 Msa0632420:CDS
CCACATCTTTCTTCTCAACT+GGG 0.492600 4_3:+16384662 None:intergenic
AGAAGTGAATAAGGTGTGGT+AGG 0.495213 4_3:-16384415 Msa0632420:three_prime_UTR
ATGCTTTAGACCAAAGTTGA+AGG 0.496438 4_3:-16386545 Msa0632420:intron
AAAGTCTTAACAAAGAATTT+GGG 0.498770 4_3:-16386643 Msa0632420:intron
AAAGGAGTGAAAACAGGAAA+AGG 0.500312 4_3:+16388307 None:intergenic
AAAATGATGAAGAAATGAAA+AGG 0.501975 4_3:+16388242 None:intergenic
TGATAGGGGAGAGAAGATTG+AGG 0.506422 4_3:-16385376 Msa0632420:CDS
AGGCTGAAAGGAGTGAAAAC+AGG 0.509825 4_3:+16388301 None:intergenic
TATTTGCAGGTTATTGATAG+GGG 0.520975 4_3:-16385390 Msa0632420:intron
AGAGGTGTTGTCAAATTTGG+AGG 0.533211 4_3:+16388281 None:intergenic
AGGTTTACTTACAACTGTGA+TGG 0.540715 4_3:-16388003 Msa0632420:CDS
TTTAATAAAAGATATGGTGG+AGG 0.542291 4_3:-16386689 Msa0632420:CDS
TAAACCTGTTGTTGGAAGCA+GGG 0.542527 4_3:+16388019 None:intergenic
ATAATGCATGGAGTGATTGT+TGG 0.549623 4_3:-16384277 Msa0632420:three_prime_UTR
TTGAAGACACTGTAAAGCAA+TGG 0.558595 4_3:+16388047 None:intergenic
TGTCAAATTTGGAGGCTGAA+AGG 0.564325 4_3:+16388289 None:intergenic
ATTAATCACTGCATAATGCA+TGG 0.568675 4_3:-16384289 Msa0632420:three_prime_UTR
TGCAGCAGATTCAATAGAAG+AGG 0.571940 4_3:+16388182 None:intergenic
GCGGAGTACAGTGACTTCAC+AGG 0.572690 4_3:-16388081 Msa0632420:CDS
TCAATGCAATTATGATAGCA+AGG 0.581523 4_3:+16384610 None:intergenic
GCTCAAGTTTCTGAAGTCAA+AGG 0.586109 4_3:-16386463 Msa0632420:CDS
TGTGAATTGTGATCATTCAT+GGG 0.599877 4_3:-16388153 Msa0632420:exon
GAAGAGAAGTGAATAAGGTG+TGG 0.600018 4_3:-16384419 Msa0632420:three_prime_UTR
AACAATACAGTTTAAAGAGT+AGG 0.602534 4_3:+16384364 None:intergenic
ACGGTTAACAACTGAAGCCA+TGG 0.606110 4_3:+16384562 None:intergenic
TCGTGGTACCGTGATTCTTG+CGG 0.609688 4_3:-16388100 Msa0632420:CDS
ACTGTACTCCGCAAGAATCA+CGG 0.610685 4_3:+16388092 None:intergenic
GCAGCAGATTCAATAGAAGA+GGG 0.624397 4_3:+16388183 None:intergenic
GCACAAGATTTCAGGCAGCA+GGG 0.625497 4_3:-16384687 Msa0632420:CDS
AGCATCTAACCTGAGAGCGA+AGG 0.629350 4_3:+16385331 None:intergenic
GTTGTGGCAGTGGAGTCTGT+TGG 0.632770 4_3:-16386755 Msa0632420:CDS
ATTATCGACGAGGAAGCTGA+AGG 0.649726 4_3:+16387975 None:intergenic
CCCAGTTGAGAAGAAAGATG+TGG 0.664612 4_3:-16384662 Msa0632420:CDS
ATATTGTGTGGAACATCCAG+AGG 0.668552 4_3:-16386512 Msa0632420:CDS
GGAGCAGATGCAATATTGTG+TGG 0.680494 4_3:-16386524 Msa0632420:CDS
TACTGAATCCATTATCGACG+AGG 0.683208 4_3:+16387965 None:intergenic
AAGACACTGTAAAGCAATGG+TGG 0.700756 4_3:+16388050 None:intergenic
TATGATGGAAAATATCGACA+AGG 0.735916 4_3:-16386437 Msa0632420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACAAAACAAAAAATA+AGG - chr4_3:16384788-16384807 Msa0632420:intron 10.0%
!! TAGATTTAATTAATGTTTAA+TGG - chr4_3:16385193-16385212 Msa0632420:intron 10.0%
!!! TAAAAATAAAATGTGATTTT+TGG - chr4_3:16385281-16385300 Msa0632420:intron 10.0%
!! TTATTTATGTAAATTGAAAT+AGG - chr4_3:16387298-16387317 Msa0632420:intron 10.0%
!!! TTTTTACAAAACAAAAAATA+AGG - chr4_3:16384788-16384807 Msa0632420:intron 10.0%
!! TAGATTTAATTAATGTTTAA+TGG - chr4_3:16385193-16385212 Msa0632420:intron 10.0%
!!! TAAAAATAAAATGTGATTTT+TGG - chr4_3:16385281-16385300 Msa0632420:intron 10.0%
!! TTATTTATGTAAATTGAAAT+AGG - chr4_3:16387298-16387317 Msa0632420:intron 10.0%
!!! TTTATTTTTTGGAAAAGAAA+TGG + chr4_3:16384345-16384364 None:intergenic 15.0%
!! AATATCGATATTATTAACTA+GGG - chr4_3:16384707-16384726 Msa0632420:intron 15.0%
!!! AAGTTTTTTTTTTTCTGTTT+TGG + chr4_3:16384939-16384958 None:intergenic 15.0%
!!! GATGATTTTAATAAAAGATA+TGG - chr4_3:16385866-16385885 Msa0632420:intron 15.0%
!! TTAAAACTTTAAACCATTTA+TGG - chr4_3:16386878-16386897 Msa0632420:intron 15.0%
!!! TATTTTTGTAGAATTGATAT+AGG + chr4_3:16386951-16386970 None:intergenic 15.0%
!!! TATTATTATATGTTATTTGC+AGG - chr4_3:16387158-16387177 Msa0632420:intron 15.0%
!! ATTTACATAAATAAAACTGT+TGG + chr4_3:16387292-16387311 None:intergenic 15.0%
!! GTTTCAAAAATTTATTTAAC+TGG + chr4_3:16387705-16387724 None:intergenic 15.0%
!! CATACAATATTCATAATTAA+TGG + chr4_3:16387805-16387824 None:intergenic 15.0%
!! TTAATTATGAATATTGTATG+AGG - chr4_3:16387805-16387824 Msa0632420:intron 15.0%
!!! TTTATTTTTTGGAAAAGAAA+TGG + chr4_3:16384345-16384364 None:intergenic 15.0%
!! AATATCGATATTATTAACTA+GGG - chr4_3:16384707-16384726 Msa0632420:intron 15.0%
!!! AAGTTTTTTTTTTTCTGTTT+TGG + chr4_3:16384939-16384958 None:intergenic 15.0%
!!! GATGATTTTAATAAAAGATA+TGG - chr4_3:16385866-16385885 Msa0632420:intron 15.0%
!! TTAAAACTTTAAACCATTTA+TGG - chr4_3:16386878-16386897 Msa0632420:intron 15.0%
!!! TATTTTTGTAGAATTGATAT+AGG + chr4_3:16386951-16386970 None:intergenic 15.0%
!!! TATTATTATATGTTATTTGC+AGG - chr4_3:16387158-16387177 Msa0632420:intron 15.0%
!! ATTTACATAAATAAAACTGT+TGG + chr4_3:16387292-16387311 None:intergenic 15.0%
!! GTTTCAAAAATTTATTTAAC+TGG + chr4_3:16387705-16387724 None:intergenic 15.0%
!! CATACAATATTCATAATTAA+TGG + chr4_3:16387805-16387824 None:intergenic 15.0%
!! TTAATTATGAATATTGTATG+AGG - chr4_3:16387805-16387824 Msa0632420:intron 15.0%
!! AAAATGATGAAGAAATGAAA+AGG + chr4_3:16384322-16384341 None:intergenic 20.0%
!! CAATATCGATATTATTAACT+AGG - chr4_3:16384706-16384725 Msa0632420:intron 20.0%
!! AAATCTAACATAATTAACGT+AGG - chr4_3:16384837-16384856 Msa0632420:intron 20.0%
!!! ATTCTTAAACTTCTGTTTTT+CGG + chr4_3:16384865-16384884 None:intergenic 20.0%
!!! TTAATTTGTCTCTTTTTTTG+TGG - chr4_3:16385360-16385379 Msa0632420:CDS 20.0%
!! AATAATGCATAAAATATGCA+AGG + chr4_3:16385407-16385426 None:intergenic 20.0%
!!! GATTTTAATAAAAGATATGG+TGG - chr4_3:16385869-16385888 Msa0632420:intron 20.0%
!! AAAAGTCTTAACAAAGAATT+TGG - chr4_3:16385917-16385936 Msa0632420:intron 20.0%
!! AAAGTCTTAACAAAGAATTT+GGG - chr4_3:16385918-16385937 Msa0632420:intron 20.0%
!!! TAGATTTTAAGATTTATGTC+GGG + chr4_3:16386339-16386358 None:intergenic 20.0%
!!! CTAGATTTTAAGATTTATGT+CGG + chr4_3:16386340-16386359 None:intergenic 20.0%
!! TATAGCAGTATAAAAAAAAC+AGG - chr4_3:16386397-16386416 Msa0632420:intron 20.0%
!!! CTTTTATGTATTTATAGAAC+AGG + chr4_3:16386549-16386568 None:intergenic 20.0%
!! CAAAGAAATCATCAATTATA+TGG + chr4_3:16386657-16386676 None:intergenic 20.0%
!! TCAGTTGTTTAACATTATTA+TGG - chr4_3:16386811-16386830 Msa0632420:intron 20.0%
!! GAATTTCATTTAATATCATG+TGG - chr4_3:16387125-16387144 Msa0632420:intron 20.0%
!!! TATCCCAATTTTTAAAGTTT+TGG - chr4_3:16387483-16387502 Msa0632420:intron 20.0%
!!! CATCCAAAACTTTAAAAATT+GGG + chr4_3:16387489-16387508 None:intergenic 20.0%
!! TTAACTGGAATTATTAGATT+TGG + chr4_3:16387690-16387709 None:intergenic 20.0%
!! TTACCAGTTATTTATTATCT+AGG - chr4_3:16387748-16387767 Msa0632420:intron 20.0%
!!! AATTCTAGAAAAAATGAGAA+CGG + chr4_3:16388021-16388040 None:intergenic 20.0%
!! TTTGTTTATTAGACATTCAA+TGG - chr4_3:16388098-16388117 Msa0632420:CDS 20.0%
!! AAACTGTATTGTTTCATTTA+TGG - chr4_3:16388207-16388226 Msa0632420:five_prime_UTR 20.0%
!! AAAATGATGAAGAAATGAAA+AGG + chr4_3:16384322-16384341 None:intergenic 20.0%
!! CAATATCGATATTATTAACT+AGG - chr4_3:16384706-16384725 Msa0632420:intron 20.0%
!! AAATCTAACATAATTAACGT+AGG - chr4_3:16384837-16384856 Msa0632420:intron 20.0%
!!! ATTCTTAAACTTCTGTTTTT+CGG + chr4_3:16384865-16384884 None:intergenic 20.0%
!!! TTAATTTGTCTCTTTTTTTG+TGG - chr4_3:16385360-16385379 Msa0632420:CDS 20.0%
!! AATAATGCATAAAATATGCA+AGG + chr4_3:16385407-16385426 None:intergenic 20.0%
!!! GATTTTAATAAAAGATATGG+TGG - chr4_3:16385869-16385888 Msa0632420:intron 20.0%
!! AAAAGTCTTAACAAAGAATT+TGG - chr4_3:16385917-16385936 Msa0632420:intron 20.0%
!! AAAGTCTTAACAAAGAATTT+GGG - chr4_3:16385918-16385937 Msa0632420:intron 20.0%
!!! TAGATTTTAAGATTTATGTC+GGG + chr4_3:16386339-16386358 None:intergenic 20.0%
!!! CTAGATTTTAAGATTTATGT+CGG + chr4_3:16386340-16386359 None:intergenic 20.0%
!! TATAGCAGTATAAAAAAAAC+AGG - chr4_3:16386397-16386416 Msa0632420:intron 20.0%
!!! CTTTTATGTATTTATAGAAC+AGG + chr4_3:16386549-16386568 None:intergenic 20.0%
!! CAAAGAAATCATCAATTATA+TGG + chr4_3:16386657-16386676 None:intergenic 20.0%
!! TCAGTTGTTTAACATTATTA+TGG - chr4_3:16386811-16386830 Msa0632420:intron 20.0%
!! GAATTTCATTTAATATCATG+TGG - chr4_3:16387125-16387144 Msa0632420:intron 20.0%
!!! TATCCCAATTTTTAAAGTTT+TGG - chr4_3:16387483-16387502 Msa0632420:intron 20.0%
!!! CATCCAAAACTTTAAAAATT+GGG + chr4_3:16387489-16387508 None:intergenic 20.0%
!! TTAACTGGAATTATTAGATT+TGG + chr4_3:16387690-16387709 None:intergenic 20.0%
!! TTACCAGTTATTTATTATCT+AGG - chr4_3:16387748-16387767 Msa0632420:intron 20.0%
!!! AATTCTAGAAAAAATGAGAA+CGG + chr4_3:16388021-16388040 None:intergenic 20.0%
!! TTTGTTTATTAGACATTCAA+TGG - chr4_3:16388098-16388117 Msa0632420:CDS 20.0%
!! AAACTGTATTGTTTCATTTA+TGG - chr4_3:16388207-16388226 Msa0632420:five_prime_UTR 20.0%
! GATATATTCAAAGGAAAAAG+AGG + chr4_3:16384669-16384688 None:intergenic 25.0%
! TTGGAACATGATATATTCAA+AGG + chr4_3:16384678-16384697 None:intergenic 25.0%
! ATAATATCGATATTGTCACT+TGG + chr4_3:16384701-16384720 None:intergenic 25.0%
! TATTTACTTGGTATAGATGT+TGG - chr4_3:16384908-16384927 Msa0632420:intron 25.0%
! TAGTTATTGTTCCACATATT+AGG + chr4_3:16385160-16385179 None:intergenic 25.0%
! AAAATAATCCAATGATGCTT+TGG - chr4_3:16385313-16385332 Msa0632420:intron 25.0%
! AAACATGTTCAACAGAAAAA+AGG + chr4_3:16385756-16385775 None:intergenic 25.0%
! TTTAATAAAAGATATGGTGG+AGG - chr4_3:16385872-16385891 Msa0632420:intron 25.0%
!!! AAATGTAGGTGTTATTTTGT+TGG + chr4_3:16386258-16386277 None:intergenic 25.0%
! ATAACATGTAGATACCAATT+CGG + chr4_3:16386293-16386312 None:intergenic 25.0%
! AAATACTTAAAGCAAAGTCT+CGG + chr4_3:16386689-16386708 None:intergenic 25.0%
! AACTGAGACAAAATACTTAA+AGG + chr4_3:16386797-16386816 None:intergenic 25.0%
! AATTGTTTAGTAGCCATAAA+TGG + chr4_3:16386894-16386913 None:intergenic 25.0%
! AAAATCGCAATCAAAATCAA+AGG + chr4_3:16386986-16387005 None:intergenic 25.0%
!! AATGAAATTCTAGAGACAAT+TGG + chr4_3:16387115-16387134 None:intergenic 25.0%
! TTATTTGCAGGTTATTGATA+GGG - chr4_3:16387170-16387189 Msa0632420:intron 25.0%
!! CATAAATAAAACTGTTGGTT+TGG + chr4_3:16387287-16387306 None:intergenic 25.0%
! ATGCATATAATAGTTAGTTC+TGG - chr4_3:16387361-16387380 Msa0632420:intron 25.0%
!! CCATCCAAAACTTTAAAAAT+TGG + chr4_3:16387490-16387509 None:intergenic 25.0%
!!! CCAATTTTTAAAGTTTTGGA+TGG - chr4_3:16387487-16387506 Msa0632420:intron 25.0%
! AAAACTAGATGTGAGAATTT+GGG + chr4_3:16387560-16387579 None:intergenic 25.0%
! TAGCCTAGATAATAAATAAC+TGG + chr4_3:16387754-16387773 None:intergenic 25.0%
! AACAATACAGTTTAAAGAGT+AGG + chr4_3:16388200-16388219 None:intergenic 25.0%
!! TTGTTTGAGTTAAAAACACT+AGG + chr4_3:16388320-16388339 None:intergenic 25.0%
! GATATATTCAAAGGAAAAAG+AGG + chr4_3:16384669-16384688 None:intergenic 25.0%
! TTGGAACATGATATATTCAA+AGG + chr4_3:16384678-16384697 None:intergenic 25.0%
! ATAATATCGATATTGTCACT+TGG + chr4_3:16384701-16384720 None:intergenic 25.0%
! TATTTACTTGGTATAGATGT+TGG - chr4_3:16384908-16384927 Msa0632420:intron 25.0%
! TAGTTATTGTTCCACATATT+AGG + chr4_3:16385160-16385179 None:intergenic 25.0%
! AAAATAATCCAATGATGCTT+TGG - chr4_3:16385313-16385332 Msa0632420:intron 25.0%
! AAACATGTTCAACAGAAAAA+AGG + chr4_3:16385756-16385775 None:intergenic 25.0%
! TTTAATAAAAGATATGGTGG+AGG - chr4_3:16385872-16385891 Msa0632420:intron 25.0%
!!! AAATGTAGGTGTTATTTTGT+TGG + chr4_3:16386258-16386277 None:intergenic 25.0%
! ATAACATGTAGATACCAATT+CGG + chr4_3:16386293-16386312 None:intergenic 25.0%
! AAATACTTAAAGCAAAGTCT+CGG + chr4_3:16386689-16386708 None:intergenic 25.0%
! AACTGAGACAAAATACTTAA+AGG + chr4_3:16386797-16386816 None:intergenic 25.0%
! AATTGTTTAGTAGCCATAAA+TGG + chr4_3:16386894-16386913 None:intergenic 25.0%
! AAAATCGCAATCAAAATCAA+AGG + chr4_3:16386986-16387005 None:intergenic 25.0%
!! AATGAAATTCTAGAGACAAT+TGG + chr4_3:16387115-16387134 None:intergenic 25.0%
! TTATTTGCAGGTTATTGATA+GGG - chr4_3:16387170-16387189 Msa0632420:intron 25.0%
!! CATAAATAAAACTGTTGGTT+TGG + chr4_3:16387287-16387306 None:intergenic 25.0%
! ATGCATATAATAGTTAGTTC+TGG - chr4_3:16387361-16387380 Msa0632420:intron 25.0%
!! CCATCCAAAACTTTAAAAAT+TGG + chr4_3:16387490-16387509 None:intergenic 25.0%
!!! CCAATTTTTAAAGTTTTGGA+TGG - chr4_3:16387487-16387506 Msa0632420:intron 25.0%
! AAAACTAGATGTGAGAATTT+GGG + chr4_3:16387560-16387579 None:intergenic 25.0%
! TAGCCTAGATAATAAATAAC+TGG + chr4_3:16387754-16387773 None:intergenic 25.0%
! AACAATACAGTTTAAAGAGT+AGG + chr4_3:16388200-16388219 None:intergenic 25.0%
!! TTGTTTGAGTTAAAAACACT+AGG + chr4_3:16388320-16388339 None:intergenic 25.0%
TTGTGAATTGTGATCATTCA+TGG - chr4_3:16384407-16384426 Msa0632420:three_prime_UTR 30.0%
TGTGAATTGTGATCATTCAT+GGG - chr4_3:16384408-16384427 Msa0632420:three_prime_UTR 30.0%
! ATCATTGATCTATAGCTTTG+TGG - chr4_3:16384437-16384456 Msa0632420:three_prime_UTR 30.0%
! CAACATCTGAGATATTTACT+TGG - chr4_3:16384896-16384915 Msa0632420:intron 30.0%
TATGTGGAACAATAACTAGT+TGG - chr4_3:16385162-16385181 Msa0632420:intron 30.0%
! AAAAATCTCCAAAGCATCAT+TGG + chr4_3:16385324-16385343 None:intergenic 30.0%
!!! ATTTGTCTCTTTTTTTGTGG+TGG - chr4_3:16385363-16385382 Msa0632420:CDS 30.0%
TGCATAAAATATGCAAGGTT+CGG + chr4_3:16385402-16385421 None:intergenic 30.0%
TGAACATGTTTCATGATTAG+TGG - chr4_3:16385765-16385784 Msa0632420:intron 30.0%
ATACGTTCAAGAAAAGCTAT+TGG + chr4_3:16385842-16385861 None:intergenic 30.0%
! AGCTTTTCTTGAACGTATTA+AGG - chr4_3:16385844-16385863 Msa0632420:intron 30.0%
! TATGATGGAAAATATCGACA+AGG - chr4_3:16386124-16386143 Msa0632420:intron 30.0%
! GGTTCTTCAATCTAAAATGT+AGG + chr4_3:16386272-16386291 None:intergenic 30.0%
TTTAGATTGAAGAACCGAAT+TGG - chr4_3:16386276-16386295 Msa0632420:intron 30.0%
AAAAATCCATGCAAAATCGT+AGG - chr4_3:16386442-16386461 Msa0632420:CDS 30.0%
!!! GATACGAGTCAATTTTAACT+CGG - chr4_3:16386492-16386511 Msa0632420:CDS 30.0%
TATTTATAGAACAGGATCAC+AGG + chr4_3:16386541-16386560 None:intergenic 30.0%
! TTTTATTCTTTCACACCACA+CGG - chr4_3:16386578-16386597 Msa0632420:intron 30.0%
! TCTTTTGCGTTGAAACTTAA+TGG - chr4_3:16386723-16386742 Msa0632420:CDS 30.0%
TATGGCTACTAAAGAATATC+TGG - chr4_3:16386829-16386848 Msa0632420:intron 30.0%
GTTATTTGCAGGTTATTGAT+AGG - chr4_3:16387169-16387188 Msa0632420:intron 30.0%
TATTTGCAGGTTATTGATAG+GGG - chr4_3:16387171-16387190 Msa0632420:intron 30.0%
ATTGAAATAGGAGATGAGTA+TGG - chr4_3:16387310-16387329 Msa0632420:intron 30.0%
!!! TAAAGTTTTGGATGGAGTTA+TGG - chr4_3:16387495-16387514 Msa0632420:intron 30.0%
GAAAACTAGATGTGAGAATT+TGG + chr4_3:16387561-16387580 None:intergenic 30.0%
!!! TTTTGAAACTCTAGCACTAT+TGG - chr4_3:16387716-16387735 Msa0632420:intron 30.0%
! TTTGAAACTCTAGCACTATT+GGG - chr4_3:16387717-16387736 Msa0632420:intron 30.0%
GTATGAGGAATGTGAATTAT+TGG - chr4_3:16387820-16387839 Msa0632420:intron 30.0%
ATTGGAACTGTCAATTGAAA+TGG - chr4_3:16387838-16387857 Msa0632420:intron 30.0%
AACTGTCAATTGAAATGGTA+TGG - chr4_3:16387843-16387862 Msa0632420:intron 30.0%
TCAATGCAATTATGATAGCA+AGG + chr4_3:16387954-16387973 None:intergenic 30.0%
! CTAGAATTGTCACTACATTT+TGG - chr4_3:16388033-16388052 Msa0632420:CDS 30.0%
GCTTCATGTAAAAAACAGTT+AGG - chr4_3:16388120-16388139 Msa0632420:CDS 30.0%
ATTAATCACTGCATAATGCA+TGG - chr4_3:16388272-16388291 Msa0632420:five_prime_UTR 30.0%
TTGTGAATTGTGATCATTCA+TGG - chr4_3:16384407-16384426 Msa0632420:three_prime_UTR 30.0%
TGTGAATTGTGATCATTCAT+GGG - chr4_3:16384408-16384427 Msa0632420:three_prime_UTR 30.0%
! ATCATTGATCTATAGCTTTG+TGG - chr4_3:16384437-16384456 Msa0632420:three_prime_UTR 30.0%
! CAACATCTGAGATATTTACT+TGG - chr4_3:16384896-16384915 Msa0632420:intron 30.0%
TATGTGGAACAATAACTAGT+TGG - chr4_3:16385162-16385181 Msa0632420:intron 30.0%
! AAAAATCTCCAAAGCATCAT+TGG + chr4_3:16385324-16385343 None:intergenic 30.0%
!!! ATTTGTCTCTTTTTTTGTGG+TGG - chr4_3:16385363-16385382 Msa0632420:CDS 30.0%
TGCATAAAATATGCAAGGTT+CGG + chr4_3:16385402-16385421 None:intergenic 30.0%
TGAACATGTTTCATGATTAG+TGG - chr4_3:16385765-16385784 Msa0632420:intron 30.0%
ATACGTTCAAGAAAAGCTAT+TGG + chr4_3:16385842-16385861 None:intergenic 30.0%
! AGCTTTTCTTGAACGTATTA+AGG - chr4_3:16385844-16385863 Msa0632420:intron 30.0%
! TATGATGGAAAATATCGACA+AGG - chr4_3:16386124-16386143 Msa0632420:intron 30.0%
! GGTTCTTCAATCTAAAATGT+AGG + chr4_3:16386272-16386291 None:intergenic 30.0%
TTTAGATTGAAGAACCGAAT+TGG - chr4_3:16386276-16386295 Msa0632420:intron 30.0%
AAAAATCCATGCAAAATCGT+AGG - chr4_3:16386442-16386461 Msa0632420:CDS 30.0%
!!! GATACGAGTCAATTTTAACT+CGG - chr4_3:16386492-16386511 Msa0632420:CDS 30.0%
TATTTATAGAACAGGATCAC+AGG + chr4_3:16386541-16386560 None:intergenic 30.0%
! TTTTATTCTTTCACACCACA+CGG - chr4_3:16386578-16386597 Msa0632420:intron 30.0%
! TCTTTTGCGTTGAAACTTAA+TGG - chr4_3:16386723-16386742 Msa0632420:CDS 30.0%
TATGGCTACTAAAGAATATC+TGG - chr4_3:16386829-16386848 Msa0632420:intron 30.0%
GTTATTTGCAGGTTATTGAT+AGG - chr4_3:16387169-16387188 Msa0632420:intron 30.0%
TATTTGCAGGTTATTGATAG+GGG - chr4_3:16387171-16387190 Msa0632420:intron 30.0%
ATTGAAATAGGAGATGAGTA+TGG - chr4_3:16387310-16387329 Msa0632420:intron 30.0%
!!! TAAAGTTTTGGATGGAGTTA+TGG - chr4_3:16387495-16387514 Msa0632420:intron 30.0%
GAAAACTAGATGTGAGAATT+TGG + chr4_3:16387561-16387580 None:intergenic 30.0%
!!! TTTTGAAACTCTAGCACTAT+TGG - chr4_3:16387716-16387735 Msa0632420:intron 30.0%
! TTTGAAACTCTAGCACTATT+GGG - chr4_3:16387717-16387736 Msa0632420:intron 30.0%
GTATGAGGAATGTGAATTAT+TGG - chr4_3:16387820-16387839 Msa0632420:intron 30.0%
ATTGGAACTGTCAATTGAAA+TGG - chr4_3:16387838-16387857 Msa0632420:intron 30.0%
AACTGTCAATTGAAATGGTA+TGG - chr4_3:16387843-16387862 Msa0632420:intron 30.0%
TCAATGCAATTATGATAGCA+AGG + chr4_3:16387954-16387973 None:intergenic 30.0%
! CTAGAATTGTCACTACATTT+TGG - chr4_3:16388033-16388052 Msa0632420:CDS 30.0%
GCTTCATGTAAAAAACAGTT+AGG - chr4_3:16388120-16388139 Msa0632420:CDS 30.0%
ATTAATCACTGCATAATGCA+TGG - chr4_3:16388272-16388291 Msa0632420:five_prime_UTR 30.0%
AAAGGAGTGAAAACAGGAAA+AGG + chr4_3:16384257-16384276 None:intergenic 35.0%
TTGAAGACACTGTAAAGCAA+TGG + chr4_3:16384517-16384536 None:intergenic 35.0%
GTTGTAAGTAAACCTGTTGT+TGG + chr4_3:16384553-16384572 None:intergenic 35.0%
AGGTTTACTTACAACTGTGA+TGG - chr4_3:16384558-16384577 Msa0632420:exon 35.0%
! TATCGATATTGTCACTTGGT+TGG + chr4_3:16384697-16384716 None:intergenic 35.0%
ATTAACTAGGGTTCGAACTT+AGG - chr4_3:16384719-16384738 Msa0632420:intron 35.0%
!! AGTTGTTCGTGAGTTTTATG+TGG - chr4_3:16384749-16384768 Msa0632420:intron 35.0%
!! ATGGTATTTTGAGCAGTGTA+TGG - chr4_3:16385116-16385135 Msa0632420:intron 35.0%
!! TGGTATTTTGAGCAGTGTAT+GGG - chr4_3:16385117-16385136 Msa0632420:intron 35.0%
TTCCACATATTAGGCAAGTT+TGG + chr4_3:16385151-16385170 None:intergenic 35.0%
ATGAATCAAGTGTCAACAGT+TGG - chr4_3:16385233-16385252 Msa0632420:intron 35.0%
CATAAAATATGCAAGGTTCG+GGG + chr4_3:16385400-16385419 None:intergenic 35.0%
GCATAAAATATGCAAGGTTC+GGG + chr4_3:16385401-16385420 None:intergenic 35.0%
! ATGCTTTAGACCAAAGTTGA+AGG - chr4_3:16386016-16386035 Msa0632420:intron 35.0%
TGAAGTCAAAGGAGTTATGA+TGG - chr4_3:16386109-16386128 Msa0632420:intron 35.0%
! CAAAATCCTACGATTTTGCA+TGG + chr4_3:16386451-16386470 None:intergenic 35.0%
! GCAAAATCGTAGGATTTTGA+AGG - chr4_3:16386452-16386471 Msa0632420:CDS 35.0%
AAGTATTTCGTCAGACATGT+AGG - chr4_3:16386766-16386785 Msa0632420:CDS 35.0%
CTAAAGAATATCTGGCATCT+AGG - chr4_3:16386837-16386856 Msa0632420:intron 35.0%
! ATCTAGGCTTGAGTATTTTG+TGG - chr4_3:16386853-16386872 Msa0632420:intron 35.0%
! GACAGTAGCTTTTCAAAATC+GGG + chr4_3:16387052-16387071 None:intergenic 35.0%
! GGACAGTAGCTTTTCAAAAT+CGG + chr4_3:16387053-16387072 None:intergenic 35.0%
GTTATGGTGTCTAAATCTCT+TGG - chr4_3:16387511-16387530 Msa0632420:intron 35.0%
! AGTTTTCTTGTTGATGCCTT+AGG - chr4_3:16387574-16387593 Msa0632420:intron 35.0%
! GTTTTCTTGTTGATGCCTTA+GGG - chr4_3:16387575-16387594 Msa0632420:intron 35.0%
GTTAGGAAGAGAAGTGAATA+AGG - chr4_3:16388137-16388156 Msa0632420:CDS 35.0%
ATAATGCATGGAGTGATTGT+TGG - chr4_3:16388284-16388303 Msa0632420:five_prime_UTR 35.0%
AAAGGAGTGAAAACAGGAAA+AGG + chr4_3:16384257-16384276 None:intergenic 35.0%
TTGAAGACACTGTAAAGCAA+TGG + chr4_3:16384517-16384536 None:intergenic 35.0%
GTTGTAAGTAAACCTGTTGT+TGG + chr4_3:16384553-16384572 None:intergenic 35.0%
AGGTTTACTTACAACTGTGA+TGG - chr4_3:16384558-16384577 Msa0632420:exon 35.0%
! TATCGATATTGTCACTTGGT+TGG + chr4_3:16384697-16384716 None:intergenic 35.0%
ATTAACTAGGGTTCGAACTT+AGG - chr4_3:16384719-16384738 Msa0632420:intron 35.0%
!! AGTTGTTCGTGAGTTTTATG+TGG - chr4_3:16384749-16384768 Msa0632420:intron 35.0%
!! ATGGTATTTTGAGCAGTGTA+TGG - chr4_3:16385116-16385135 Msa0632420:intron 35.0%
!! TGGTATTTTGAGCAGTGTAT+GGG - chr4_3:16385117-16385136 Msa0632420:intron 35.0%
TTCCACATATTAGGCAAGTT+TGG + chr4_3:16385151-16385170 None:intergenic 35.0%
ATGAATCAAGTGTCAACAGT+TGG - chr4_3:16385233-16385252 Msa0632420:intron 35.0%
CATAAAATATGCAAGGTTCG+GGG + chr4_3:16385400-16385419 None:intergenic 35.0%
GCATAAAATATGCAAGGTTC+GGG + chr4_3:16385401-16385420 None:intergenic 35.0%
! ATGCTTTAGACCAAAGTTGA+AGG - chr4_3:16386016-16386035 Msa0632420:intron 35.0%
TGAAGTCAAAGGAGTTATGA+TGG - chr4_3:16386109-16386128 Msa0632420:intron 35.0%
! CAAAATCCTACGATTTTGCA+TGG + chr4_3:16386451-16386470 None:intergenic 35.0%
! GCAAAATCGTAGGATTTTGA+AGG - chr4_3:16386452-16386471 Msa0632420:CDS 35.0%
AAGTATTTCGTCAGACATGT+AGG - chr4_3:16386766-16386785 Msa0632420:CDS 35.0%
CTAAAGAATATCTGGCATCT+AGG - chr4_3:16386837-16386856 Msa0632420:intron 35.0%
! ATCTAGGCTTGAGTATTTTG+TGG - chr4_3:16386853-16386872 Msa0632420:intron 35.0%
! GACAGTAGCTTTTCAAAATC+GGG + chr4_3:16387052-16387071 None:intergenic 35.0%
! GGACAGTAGCTTTTCAAAAT+CGG + chr4_3:16387053-16387072 None:intergenic 35.0%
GTTATGGTGTCTAAATCTCT+TGG - chr4_3:16387511-16387530 Msa0632420:intron 35.0%
! AGTTTTCTTGTTGATGCCTT+AGG - chr4_3:16387574-16387593 Msa0632420:intron 35.0%
! GTTTTCTTGTTGATGCCTTA+GGG - chr4_3:16387575-16387594 Msa0632420:intron 35.0%
GTTAGGAAGAGAAGTGAATA+AGG - chr4_3:16388137-16388156 Msa0632420:CDS 35.0%
ATAATGCATGGAGTGATTGT+TGG - chr4_3:16388284-16388303 Msa0632420:five_prime_UTR 35.0%
TGTCAAATTTGGAGGCTGAA+AGG + chr4_3:16384275-16384294 None:intergenic 40.0%
!! AGAGGTGTTGTCAAATTTGG+AGG + chr4_3:16384283-16384302 None:intergenic 40.0%
!! GAGAGAGGTGTTGTCAAATT+TGG + chr4_3:16384286-16384305 None:intergenic 40.0%
GCAGCAGATTCAATAGAAGA+GGG + chr4_3:16384381-16384400 None:intergenic 40.0%
TGCAGCAGATTCAATAGAAG+AGG + chr4_3:16384382-16384401 None:intergenic 40.0%
AAGACACTGTAAAGCAATGG+TGG + chr4_3:16384514-16384533 None:intergenic 40.0%
TAAACCTGTTGTTGGAAGCA+GGG + chr4_3:16384545-16384564 None:intergenic 40.0%
TACTGAATCCATTATCGACG+AGG + chr4_3:16384599-16384618 None:intergenic 40.0%
CATCCAACAATAGAAGTGGA+CGG + chr4_3:16385081-16385100 None:intergenic 40.0%
CACTGCTCAAAATACCATCA+CGG + chr4_3:16385114-16385133 None:intergenic 40.0%
GTCCAAACTTGCCTAATATG+TGG - chr4_3:16385146-16385165 Msa0632420:intron 40.0%
CTGTTAGTGAGCTTCAACTT+TGG + chr4_3:16385609-16385628 None:intergenic 40.0%
! TTTTGCAGCTTACTGTGTTG+TGG - chr4_3:16385790-16385809 Msa0632420:intron 40.0%
ATATTGTGTGGAACATCCAG+AGG - chr4_3:16386049-16386068 Msa0632420:intron 40.0%
!! GCTCAAGTTTCTGAAGTCAA+AGG - chr4_3:16386098-16386117 Msa0632420:intron 40.0%
! CAAAATCGGGATTTAGCTTC+AGG + chr4_3:16387039-16387058 None:intergenic 40.0%
! GCAAAGCACCTAAACATACA+CGG + chr4_3:16387081-16387100 None:intergenic 40.0%
!! AGAGAAGATTGAGGTTTTGG+TGG - chr4_3:16387194-16387213 Msa0632420:intron 40.0%
ACTCACACTTGAACCAAACA+AGG + chr4_3:16387406-16387425 None:intergenic 40.0%
! TTGTTTGGTTCAAGTGTGAG+TGG - chr4_3:16387405-16387424 Msa0632420:intron 40.0%
CCACATCTTTCTTCTCAACT+GGG + chr4_3:16387902-16387921 None:intergenic 40.0%
ACCACATCTTTCTTCTCAAC+TGG + chr4_3:16387903-16387922 None:intergenic 40.0%
ATTGTTCTTTCTGTGTGCCA+TGG - chr4_3:16387982-16388001 Msa0632420:CDS 40.0%
GAAGAGAAGTGAATAAGGTG+TGG - chr4_3:16388142-16388161 Msa0632420:exon 40.0%
AGAAGTGAATAAGGTGTGGT+AGG - chr4_3:16388146-16388165 Msa0632420:exon 40.0%
!! TGGAGTGATTGTTGGTGTTT+TGG - chr4_3:16388292-16388311 Msa0632420:five_prime_UTR 40.0%
TGTCAAATTTGGAGGCTGAA+AGG + chr4_3:16384275-16384294 None:intergenic 40.0%
!! AGAGGTGTTGTCAAATTTGG+AGG + chr4_3:16384283-16384302 None:intergenic 40.0%
!! GAGAGAGGTGTTGTCAAATT+TGG + chr4_3:16384286-16384305 None:intergenic 40.0%
GCAGCAGATTCAATAGAAGA+GGG + chr4_3:16384381-16384400 None:intergenic 40.0%
TGCAGCAGATTCAATAGAAG+AGG + chr4_3:16384382-16384401 None:intergenic 40.0%
AAGACACTGTAAAGCAATGG+TGG + chr4_3:16384514-16384533 None:intergenic 40.0%
TAAACCTGTTGTTGGAAGCA+GGG + chr4_3:16384545-16384564 None:intergenic 40.0%
TACTGAATCCATTATCGACG+AGG + chr4_3:16384599-16384618 None:intergenic 40.0%
CATCCAACAATAGAAGTGGA+CGG + chr4_3:16385081-16385100 None:intergenic 40.0%
CACTGCTCAAAATACCATCA+CGG + chr4_3:16385114-16385133 None:intergenic 40.0%
GTCCAAACTTGCCTAATATG+TGG - chr4_3:16385146-16385165 Msa0632420:intron 40.0%
CTGTTAGTGAGCTTCAACTT+TGG + chr4_3:16385609-16385628 None:intergenic 40.0%
! TTTTGCAGCTTACTGTGTTG+TGG - chr4_3:16385790-16385809 Msa0632420:intron 40.0%
ATATTGTGTGGAACATCCAG+AGG - chr4_3:16386049-16386068 Msa0632420:intron 40.0%
!! GCTCAAGTTTCTGAAGTCAA+AGG - chr4_3:16386098-16386117 Msa0632420:intron 40.0%
! CAAAATCGGGATTTAGCTTC+AGG + chr4_3:16387039-16387058 None:intergenic 40.0%
! GCAAAGCACCTAAACATACA+CGG + chr4_3:16387081-16387100 None:intergenic 40.0%
!! AGAGAAGATTGAGGTTTTGG+TGG - chr4_3:16387194-16387213 Msa0632420:intron 40.0%
ACTCACACTTGAACCAAACA+AGG + chr4_3:16387406-16387425 None:intergenic 40.0%
! TTGTTTGGTTCAAGTGTGAG+TGG - chr4_3:16387405-16387424 Msa0632420:intron 40.0%
CCACATCTTTCTTCTCAACT+GGG + chr4_3:16387902-16387921 None:intergenic 40.0%
ACCACATCTTTCTTCTCAAC+TGG + chr4_3:16387903-16387922 None:intergenic 40.0%
ATTGTTCTTTCTGTGTGCCA+TGG - chr4_3:16387982-16388001 Msa0632420:CDS 40.0%
GAAGAGAAGTGAATAAGGTG+TGG - chr4_3:16388142-16388161 Msa0632420:exon 40.0%
AGAAGTGAATAAGGTGTGGT+AGG - chr4_3:16388146-16388165 Msa0632420:exon 40.0%
!! TGGAGTGATTGTTGGTGTTT+TGG - chr4_3:16388292-16388311 Msa0632420:five_prime_UTR 40.0%
AGGCTGAAAGGAGTGAAAAC+AGG + chr4_3:16384263-16384282 None:intergenic 45.0%
GGAGAGAGATATAGAGAGAG+AGG + chr4_3:16384301-16384320 None:intergenic 45.0%
!! ATCTATAGCTTTGTGGCTCG+TGG - chr4_3:16384444-16384463 Msa0632420:three_prime_UTR 45.0%
ACTGTACTCCGCAAGAATCA+CGG + chr4_3:16384472-16384491 None:intergenic 45.0%
GTAAACCTGTTGTTGGAAGC+AGG + chr4_3:16384546-16384565 None:intergenic 45.0%
ATTATCGACGAGGAAGCTGA+AGG + chr4_3:16384589-16384608 None:intergenic 45.0%
TTCAGCTTCCTCGTCGATAA+TGG - chr4_3:16384588-16384607 Msa0632420:CDS 45.0%
AGACCGTCCACTTCTATTGT+TGG - chr4_3:16385075-16385094 Msa0632420:intron 45.0%
CGTCCACTTCTATTGTTGGA+TGG - chr4_3:16385079-16385098 Msa0632420:intron 45.0%
CCACCATCCAACAATAGAAG+TGG + chr4_3:16385085-16385104 None:intergenic 45.0%
CCACTTCTATTGTTGGATGG+TGG - chr4_3:16385082-16385101 Msa0632420:intron 45.0%
TTGAGCAGTGTATGGGTCAA+TGG - chr4_3:16385124-16385143 Msa0632420:intron 45.0%
CAAGTGTCAACAGTTGGCTA+AGG - chr4_3:16385239-16385258 Msa0632420:intron 45.0%
!!! GTCTCTTTTTTTGTGGTGGC+CGG - chr4_3:16385367-16385386 Msa0632420:CDS 45.0%
!!! TCTCTTTTTTTGTGGTGGCC+GGG - chr4_3:16385368-16385387 Msa0632420:CDS 45.0%
GTGAGCTTAGCTCAGTTGAT+AGG + chr4_3:16385430-16385449 None:intergenic 45.0%
TGCATCTGCTCCTTCAACTT+TGG + chr4_3:16386029-16386048 None:intergenic 45.0%
GGAGCAGATGCAATATTGTG+TGG - chr4_3:16386037-16386056 Msa0632420:intron 45.0%
!! GCAAGTTTGCTAACTTCCTC+TGG + chr4_3:16386068-16386087 None:intergenic 45.0%
ACTCGGTTCATCAATTGACC+TGG - chr4_3:16386509-16386528 Msa0632420:CDS 45.0%
TCTGCACAAGAGATTGACGA+AGG - chr4_3:16386603-16386622 Msa0632420:intron 45.0%
! AGGCGAACGTGTTGATATGA+TGG - chr4_3:16386623-16386642 Msa0632420:intron 45.0%
! ATCGGGATTTAGCTTCAGGT+CGG + chr4_3:16387035-16387054 None:intergenic 45.0%
TCCTGTGTCCGTGTATGTTT+AGG - chr4_3:16387070-16387089 Msa0632420:intron 45.0%
ACCTAAACATACACGGACAC+AGG + chr4_3:16387074-16387093 None:intergenic 45.0%
TGATAGGGGAGAGAAGATTG+AGG - chr4_3:16387185-16387204 Msa0632420:intron 45.0%
! GGGAGAGAAGATTGAGGTTT+TGG - chr4_3:16387191-16387210 Msa0632420:intron 45.0%
ACTCGAATGACGTCCTTGTT+TGG - chr4_3:16387390-16387409 Msa0632420:intron 45.0%
TCTTGGTCGTCCTGAATCAT+CGG - chr4_3:16387528-16387547 Msa0632420:intron 45.0%
TTGAAATGGTATGGCTGTGC+AGG - chr4_3:16387852-16387871 Msa0632420:intron 45.0%
CCCAGTTGAGAAGAAAGATG+TGG - chr4_3:16387899-16387918 Msa0632420:intron 45.0%
ACGGTTAACAACTGAAGCCA+TGG + chr4_3:16388002-16388021 None:intergenic 45.0%
AGGCTGAAAGGAGTGAAAAC+AGG + chr4_3:16384263-16384282 None:intergenic 45.0%
GGAGAGAGATATAGAGAGAG+AGG + chr4_3:16384301-16384320 None:intergenic 45.0%
!! ATCTATAGCTTTGTGGCTCG+TGG - chr4_3:16384444-16384463 Msa0632420:three_prime_UTR 45.0%
ACTGTACTCCGCAAGAATCA+CGG + chr4_3:16384472-16384491 None:intergenic 45.0%
GTAAACCTGTTGTTGGAAGC+AGG + chr4_3:16384546-16384565 None:intergenic 45.0%
ATTATCGACGAGGAAGCTGA+AGG + chr4_3:16384589-16384608 None:intergenic 45.0%
TTCAGCTTCCTCGTCGATAA+TGG - chr4_3:16384588-16384607 Msa0632420:CDS 45.0%
AGACCGTCCACTTCTATTGT+TGG - chr4_3:16385075-16385094 Msa0632420:intron 45.0%
CGTCCACTTCTATTGTTGGA+TGG - chr4_3:16385079-16385098 Msa0632420:intron 45.0%
CCACCATCCAACAATAGAAG+TGG + chr4_3:16385085-16385104 None:intergenic 45.0%
CCACTTCTATTGTTGGATGG+TGG - chr4_3:16385082-16385101 Msa0632420:intron 45.0%
TTGAGCAGTGTATGGGTCAA+TGG - chr4_3:16385124-16385143 Msa0632420:intron 45.0%
CAAGTGTCAACAGTTGGCTA+AGG - chr4_3:16385239-16385258 Msa0632420:intron 45.0%
!!! GTCTCTTTTTTTGTGGTGGC+CGG - chr4_3:16385367-16385386 Msa0632420:CDS 45.0%
!!! TCTCTTTTTTTGTGGTGGCC+GGG - chr4_3:16385368-16385387 Msa0632420:CDS 45.0%
GTGAGCTTAGCTCAGTTGAT+AGG + chr4_3:16385430-16385449 None:intergenic 45.0%
TGCATCTGCTCCTTCAACTT+TGG + chr4_3:16386029-16386048 None:intergenic 45.0%
GGAGCAGATGCAATATTGTG+TGG - chr4_3:16386037-16386056 Msa0632420:intron 45.0%
!! GCAAGTTTGCTAACTTCCTC+TGG + chr4_3:16386068-16386087 None:intergenic 45.0%
ACTCGGTTCATCAATTGACC+TGG - chr4_3:16386509-16386528 Msa0632420:CDS 45.0%
TCTGCACAAGAGATTGACGA+AGG - chr4_3:16386603-16386622 Msa0632420:intron 45.0%
! AGGCGAACGTGTTGATATGA+TGG - chr4_3:16386623-16386642 Msa0632420:intron 45.0%
! ATCGGGATTTAGCTTCAGGT+CGG + chr4_3:16387035-16387054 None:intergenic 45.0%
TCCTGTGTCCGTGTATGTTT+AGG - chr4_3:16387070-16387089 Msa0632420:intron 45.0%
ACCTAAACATACACGGACAC+AGG + chr4_3:16387074-16387093 None:intergenic 45.0%
TGATAGGGGAGAGAAGATTG+AGG - chr4_3:16387185-16387204 Msa0632420:intron 45.0%
! GGGAGAGAAGATTGAGGTTT+TGG - chr4_3:16387191-16387210 Msa0632420:intron 45.0%
ACTCGAATGACGTCCTTGTT+TGG - chr4_3:16387390-16387409 Msa0632420:intron 45.0%
TCTTGGTCGTCCTGAATCAT+CGG - chr4_3:16387528-16387547 Msa0632420:intron 45.0%
TTGAAATGGTATGGCTGTGC+AGG - chr4_3:16387852-16387871 Msa0632420:intron 45.0%
CCCAGTTGAGAAGAAAGATG+TGG - chr4_3:16387899-16387918 Msa0632420:intron 45.0%
ACGGTTAACAACTGAAGCCA+TGG + chr4_3:16388002-16388021 None:intergenic 45.0%
!!! AGATTTTTTATTTTATTTTT+TGG + chr4_3:16384356-16384375 None:intergenic 5.0%
!!! AGATTTTTTATTTTATTTTT+TGG + chr4_3:16384356-16384375 None:intergenic 5.0%
TCGTGGTACCGTGATTCTTG+CGG - chr4_3:16384461-16384480 Msa0632420:three_prime_UTR 50.0%
AACTCCCTGCTTCCAACAAC+AGG - chr4_3:16384538-16384557 Msa0632420:three_prime_UTR 50.0%
! GATGGTGGCATTAACCGTGA+TGG - chr4_3:16385097-16385116 Msa0632420:intron 50.0%
!!! CTCTTTTTTTGTGGTGGCCG+GGG - chr4_3:16385369-16385388 Msa0632420:CDS 50.0%
AGCTTACTGTGTTGTGGCAG+TGG - chr4_3:16385796-16385815 Msa0632420:intron 50.0%
CAGGATCACAGGTACAAACC+AGG + chr4_3:16386530-16386549 None:intergenic 50.0%
! GGATTTAGCTTCAGGTCGGA+AGG + chr4_3:16387031-16387050 None:intergenic 50.0%
AACTGAGAACCTTCGCTCTC+AGG - chr4_3:16387221-16387240 Msa0632420:intron 50.0%
AGCATCTAACCTGAGAGCGA+AGG + chr4_3:16387233-16387252 None:intergenic 50.0%
CTTGGTCGTCCTGAATCATC+GGG - chr4_3:16387529-16387548 Msa0632420:intron 50.0%
TGGGACTAACCCGATGATTC+AGG + chr4_3:16387541-16387560 None:intergenic 50.0%
GTTGATGCCTTAGGGATCAC+TGG - chr4_3:16387583-16387602 Msa0632420:intron 50.0%
CTGTGCAGGCACAAGATTTC+AGG - chr4_3:16387866-16387885 Msa0632420:intron 50.0%
GCACAAGATTTCAGGCAGCA+GGG - chr4_3:16387874-16387893 Msa0632420:intron 50.0%
TCGTGGTACCGTGATTCTTG+CGG - chr4_3:16384461-16384480 Msa0632420:three_prime_UTR 50.0%
AACTCCCTGCTTCCAACAAC+AGG - chr4_3:16384538-16384557 Msa0632420:three_prime_UTR 50.0%
! GATGGTGGCATTAACCGTGA+TGG - chr4_3:16385097-16385116 Msa0632420:intron 50.0%
!!! CTCTTTTTTTGTGGTGGCCG+GGG - chr4_3:16385369-16385388 Msa0632420:CDS 50.0%
AGCTTACTGTGTTGTGGCAG+TGG - chr4_3:16385796-16385815 Msa0632420:intron 50.0%
CAGGATCACAGGTACAAACC+AGG + chr4_3:16386530-16386549 None:intergenic 50.0%
! GGATTTAGCTTCAGGTCGGA+AGG + chr4_3:16387031-16387050 None:intergenic 50.0%
AACTGAGAACCTTCGCTCTC+AGG - chr4_3:16387221-16387240 Msa0632420:intron 50.0%
AGCATCTAACCTGAGAGCGA+AGG + chr4_3:16387233-16387252 None:intergenic 50.0%
CTTGGTCGTCCTGAATCATC+GGG - chr4_3:16387529-16387548 Msa0632420:intron 50.0%
TGGGACTAACCCGATGATTC+AGG + chr4_3:16387541-16387560 None:intergenic 50.0%
GTTGATGCCTTAGGGATCAC+TGG - chr4_3:16387583-16387602 Msa0632420:intron 50.0%
CTGTGCAGGCACAAGATTTC+AGG - chr4_3:16387866-16387885 Msa0632420:intron 50.0%
GCACAAGATTTCAGGCAGCA+GGG - chr4_3:16387874-16387893 Msa0632420:intron 50.0%
GCGGAGTACAGTGACTTCAC+AGG - chr4_3:16384480-16384499 Msa0632420:three_prime_UTR 55.0%
GTTGTGGCAGTGGAGTCTGT+TGG - chr4_3:16385806-16385825 Msa0632420:intron 55.0%
TCTCTTGTGCAGAGACCGTG+TGG + chr4_3:16386596-16386615 None:intergenic 55.0%
!! GCCTTAGGGATCACTGGTTC+AGG - chr4_3:16387589-16387608 Msa0632420:intron 55.0%
GCCTGAACCAGTGATCCCTA+AGG + chr4_3:16387593-16387612 None:intergenic 55.0%
GGCACAAGATTTCAGGCAGC+AGG - chr4_3:16387873-16387892 Msa0632420:intron 55.0%
GCGGAGTACAGTGACTTCAC+AGG - chr4_3:16384480-16384499 Msa0632420:three_prime_UTR 55.0%
GTTGTGGCAGTGGAGTCTGT+TGG - chr4_3:16385806-16385825 Msa0632420:intron 55.0%
TCTCTTGTGCAGAGACCGTG+TGG + chr4_3:16386596-16386615 None:intergenic 55.0%
!! GCCTTAGGGATCACTGGTTC+AGG - chr4_3:16387589-16387608 Msa0632420:intron 55.0%
GCCTGAACCAGTGATCCCTA+AGG + chr4_3:16387593-16387612 None:intergenic 55.0%
GGCACAAGATTTCAGGCAGC+AGG - chr4_3:16387873-16387892 Msa0632420:intron 55.0%
CAAGGTTCGGGGTTCGACCC+CGG + chr4_3:16385389-16385408 None:intergenic 65.0%
CAAGGTTCGGGGTTCGACCC+CGG + chr4_3:16385389-16385408 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 16384242 16388341 16384242 ID=Msa0632420;Name=Msa0632420
chr4_3 mRNA 16384242 16388341 16384242 ID=Msa0632420-mRNA-1;Parent=Msa0632420;Name=Msa0632420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=184|1|1|1|1|1|5|324|219
chr4_3 exon 16384242 16384709 16384242 ID=Msa0632420-mRNA-1:exon:4646;Parent=Msa0632420-mRNA-1
chr4_3 exon 16385341 16385403 16385341 ID=Msa0632420-mRNA-1:exon:4645;Parent=Msa0632420-mRNA-1
chr4_3 exon 16386438 16386558 16386438 ID=Msa0632420-mRNA-1:exon:4644;Parent=Msa0632420-mRNA-1
chr4_3 exon 16386644 16386785 16386644 ID=Msa0632420-mRNA-1:exon:4643;Parent=Msa0632420-mRNA-1
chr4_3 exon 16387968 16388341 16387968 ID=Msa0632420-mRNA-1:exon:4642;Parent=Msa0632420-mRNA-1
chr4_3 five_prime_UTR 16388158 16388341 16388158 ID=Msa0632420-mRNA-1:five_prime_utr;Parent=Msa0632420-mRNA-1
chr4_3 CDS 16387968 16388157 16387968 ID=Msa0632420-mRNA-1:cds;Parent=Msa0632420-mRNA-1
chr4_3 CDS 16386644 16386785 16386644 ID=Msa0632420-mRNA-1:cds;Parent=Msa0632420-mRNA-1
chr4_3 CDS 16386438 16386558 16386438 ID=Msa0632420-mRNA-1:cds;Parent=Msa0632420-mRNA-1
chr4_3 CDS 16385341 16385403 16385341 ID=Msa0632420-mRNA-1:cds;Parent=Msa0632420-mRNA-1
chr4_3 CDS 16384566 16384709 16384566 ID=Msa0632420-mRNA-1:cds;Parent=Msa0632420-mRNA-1
chr4_3 three_prime_UTR 16384242 16384565 16384242 ID=Msa0632420-mRNA-1:three_prime_utr;Parent=Msa0632420-mRNA-1
Gene Sequence

>Msa0632420

ATGGGACAACAATCATTGATCTATAGCTTTGTGGCTCGTGGTACCGTGATTCTTGCGGAGTACAGTGACTTCACAGGAAACTTCACCACCATTGCTTTACAGTGTCTTCAAAAACTCCCTGCTTCCAACAACAGGTTTACTTACAACTGTGATGGACATACCTTCAGCTTCCTCGTCGATAATGGATTCACTTACTGTGTTGTGGCAGTGGAGTCTGTTGGTAGACAAATTCCAATAGCTTTTCTTGAACGTATTAAGGATGATTTTAATAAAAGATATGGTGGAGGAAGAGCTACAACAGCAACTGCTAAAAGTCTTAACAAAGAATTTGGACCAAAGTTGAAGGAGCAGATGCAATATTGTGTGGAACATCCAGAGGAAGTTAGCAAACTTGCTAAAGTGAAAGCTCAAGTTTCTGAAGTCAAAGGAGTTATGATGGAAAATATCGACAAGGTTATTGATAGGGGAGAGAAGATTGAGGTTTTGGTGGATAAAACTGAGAACCTTCGCTCTCAGGCACAAGATTTCAGGCAGCAGGGAACCCAGTTGAGAAGAAAGATGTGGTATCAAAACATGAAGATCAAGCTAATAGTCCTTGCTATCATAATTGCATTGATTCTCATTATTGTTCTTTCTGTGTGCCATGGCTTCAGTTGTTAA

Protein sequence

>Msa0632420

MGQQSLIYSFVARGTVILAEYSDFTGNFTTIALQCLQKLPASNNRFTYNCDGHTFSFLVDNGFTYCVVAVESVGRQIPIAFLERIKDDFNKRYGGGRATTATAKSLNKEFGPKLKEQMQYCVEHPEEVSKLAKVKAQVSEVKGVMMENIDKVIDRGEKIEVLVDKTENLRSQAQDFRQQGTQLRRKMWYQNMKIKLIVLAIIIALILIIVLSVCHGFSC*