Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238190 | XP_003628207.1 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 3.20e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238190 | sp|Q9SSK5|MLP43_ARATH | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.08e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095940 | Msa1238190 | 0.806259 | 8.970860e-50 | -8.615850e-47 |
| Msa0657710 | Msa1238190 | 0.807472 | 4.970402e-50 | -8.615850e-47 |
| Msa0657720 | Msa1238190 | 0.803198 | 3.907902e-49 | -8.615850e-47 |
| Msa0702790 | Msa1238190 | 0.804643 | 1.957973e-49 | -8.615850e-47 |
| Msa0702800 | Msa1238190 | 0.802770 | 4.791395e-49 | -8.615850e-47 |
| Msa0709140 | Msa1238190 | 0.815375 | 9.547242e-52 | -8.615850e-47 |
| Msa0800180 | Msa1238190 | 0.804706 | 1.899135e-49 | -8.615850e-47 |
| Msa0810330 | Msa1238190 | 0.804860 | 1.763356e-49 | -8.615850e-47 |
| Msa0828950 | Msa1238190 | 0.808196 | 3.488357e-50 | -8.615850e-47 |
| Msa0828960 | Msa1238190 | 0.807515 | 4.869024e-50 | -8.615850e-47 |
| Msa0833270 | Msa1238190 | 0.809571 | 1.771572e-50 | -8.615850e-47 |
| Msa0139680 | Msa1238190 | 0.815912 | 7.248979e-52 | -8.615850e-47 |
| Msa0210610 | Msa1238190 | 0.814545 | 1.458939e-51 | -8.615850e-47 |
| Msa1238190 | Msa1238600 | 0.818414 | 1.984693e-52 | -8.615850e-47 |
| Msa1238190 | Msa1284020 | 0.805519 | 1.283743e-49 | -8.615850e-47 |
| Msa1238190 | Msa1307530 | 0.814029 | 1.897119e-51 | -8.615850e-47 |
| Msa1238190 | Msa1323010 | 0.996453 | 1.003719e-227 | -8.615850e-47 |
| Msa1238190 | Msa1323070 | 0.839717 | 1.340453e-57 | -8.615850e-47 |
| Msa1238190 | Msa1404050 | 0.808781 | 2.616436e-50 | -8.615850e-47 |
| Msa1238190 | Msa1439250 | 0.844645 | 6.648383e-59 | -8.615850e-47 |
| Msa1238190 | Msa1439270 | 0.800239 | 1.582137e-48 | -8.615850e-47 |
| Msa1019420 | Msa1238190 | 0.823084 | 1.675261e-53 | -8.615850e-47 |
| Msa0286360 | Msa1238190 | 0.813983 | 1.941463e-51 | -8.615850e-47 |
| Msa0293720 | Msa1238190 | 0.819221 | 1.301333e-52 | -8.615850e-47 |
| Msa0298000 | Msa1238190 | 0.800292 | 1.543236e-48 | -8.615850e-47 |
| Msa1187480 | Msa1238190 | 0.814418 | 1.556027e-51 | -8.615850e-47 |
| Msa1202800 | Msa1238190 | 0.801022 | 1.095522e-48 | -8.615850e-47 |
| Msa1207390 | Msa1238190 | 0.802563 | 5.286700e-49 | -8.615850e-47 |
| Msa1207430 | Msa1238190 | 0.802569 | 5.271899e-49 | -8.615850e-47 |
| Msa0529110 | Msa1238190 | 0.805718 | 1.166068e-49 | -8.615850e-47 |
| Msa0595270 | Msa1238190 | 0.811674 | 6.222478e-51 | -8.615850e-47 |
| Msa0870510 | Msa1238190 | 0.803992 | 2.675363e-49 | -8.615850e-47 |
| Msa0905570 | Msa1238190 | 0.803416 | 3.522447e-49 | -8.615850e-47 |
| Msa0940910 | Msa1238190 | 0.847746 | 9.517048e-60 | -8.615850e-47 |
| Msa0946330 | Msa1238190 | 0.996540 | 7.442881e-229 | -8.615850e-47 |
| Msa0974710 | Msa1238190 | 0.811085 | 8.353019e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238190 | MtrunA17_Chr8g0355781 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.94e-110 | 309 |
| Msa1238190 | MtrunA17_Chr8g0355721 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 1.84e-86 | 249 |
| Msa1238190 | MtrunA17_Chr8g0355741 | 72.848 | 151 | 41 | 0 | 1 | 151 | 1 | 151 | 2.65e-82 | 239 |
| Msa1238190 | MtrunA17_Chr8g0355641 | 72.185 | 151 | 42 | 0 | 1 | 151 | 1 | 151 | 1.45e-81 | 237 |
| Msa1238190 | MtrunA17_Chr8g0355811 | 71.711 | 152 | 42 | 1 | 1 | 152 | 1 | 151 | 1.01e-80 | 235 |
| Msa1238190 | MtrunA17_Chr8g0355661 | 72.368 | 152 | 41 | 1 | 1 | 152 | 1 | 151 | 1.19e-80 | 235 |
| Msa1238190 | MtrunA17_Chr8g0355761 | 70.395 | 152 | 45 | 0 | 1 | 152 | 1 | 152 | 1.15e-79 | 232 |
| Msa1238190 | MtrunA17_Chr8g0355821 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 1.64e-76 | 224 |
| Msa1238190 | MtrunA17_Chr8g0355801 | 68.421 | 152 | 47 | 1 | 1 | 152 | 1 | 151 | 3.00e-76 | 224 |
| Msa1238190 | MtrunA17_Chr8g0355791 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 3.27e-74 | 218 |
| Msa1238190 | MtrunA17_Chr8g0355771 | 67.105 | 152 | 49 | 1 | 1 | 152 | 1 | 151 | 2.04e-73 | 216 |
| Msa1238190 | MtrunA17_Chr1g0160371 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.37e-42 | 138 |
| Msa1238190 | MtrunA17_Chr1g0160381 | 39.216 | 153 | 90 | 2 | 1 | 151 | 5 | 156 | 2.08e-39 | 130 |
| Msa1238190 | MtrunA17_Chr8g0339261 | 37.241 | 145 | 88 | 3 | 6 | 149 | 8 | 150 | 6.93e-32 | 111 |
| Msa1238190 | MtrunA17_Chr1g0160391 | 38.462 | 156 | 88 | 4 | 1 | 149 | 1 | 155 | 5.01e-29 | 104 |
| Msa1238190 | MtrunA17_Chr1g0160801 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 9.71e-26 | 95.5 |
| Msa1238190 | MtrunA17_Chr1g0160351 | 45.161 | 93 | 49 | 1 | 61 | 151 | 1 | 93 | 4.82e-23 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238190 | AT5G28010.1 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa1238190 | AT5G28010.2 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa1238190 | AT1G70890.1 | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.16e-28 | 102 |
| Msa1238190 | AT1G70840.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 20 | 168 | 3.09e-27 | 100 |
| Msa1238190 | AT1G70830.5 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.24e-25 | 96.3 |
| Msa1238190 | AT1G70830.3 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.60e-25 | 96.3 |
| Msa1238190 | AT1G70830.2 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 9.65e-25 | 95.9 |
| Msa1238190 | AT1G70850.2 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 1.15e-24 | 95.5 |
| Msa1238190 | AT1G23120.1 | 32.667 | 150 | 96 | 3 | 1 | 150 | 1 | 145 | 1.60e-24 | 92.8 |
| Msa1238190 | AT1G70830.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.83e-24 | 96.3 |
| Msa1238190 | AT1G70830.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 184 | 332 | 3.11e-23 | 93.6 |
| Msa1238190 | AT1G70850.3 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa1238190 | AT1G70850.3 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa1238190 | AT1G70850.1 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa1238190 | AT1G70850.1 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa1238190 | AT1G23120.2 | 33.333 | 144 | 91 | 3 | 7 | 150 | 57 | 195 | 8.98e-24 | 92.0 |
| Msa1238190 | AT1G70830.4 | 34.000 | 150 | 96 | 3 | 3 | 150 | 137 | 285 | 1.18e-23 | 94.0 |
| Msa1238190 | AT1G70830.4 | 33.333 | 93 | 61 | 1 | 59 | 150 | 31 | 123 | 3.28e-13 | 65.5 |
| Msa1238190 | AT1G70870.1 | 36.486 | 148 | 75 | 4 | 7 | 152 | 9 | 139 | 9.43e-22 | 85.5 |
| Msa1238190 | AT5G28000.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 13 | 161 | 2.15e-21 | 85.1 |
| Msa1238190 | AT4G23670.1 | 34.783 | 161 | 86 | 5 | 1 | 152 | 1 | 151 | 1.04e-20 | 83.2 |
| Msa1238190 | AT1G70880.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 4.18e-20 | 81.6 |
| Msa1238190 | AT1G23130.1 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 4.67e-20 | 81.6 |
| Msa1238190 | AT2G01520.1 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.71e-19 | 79.3 |
| Msa1238190 | AT1G14930.1 | 31.250 | 160 | 93 | 4 | 1 | 152 | 1 | 151 | 3.69e-19 | 79.0 |
| Msa1238190 | AT4G14060.1 | 32.026 | 153 | 101 | 3 | 1 | 152 | 1 | 151 | 3.14e-18 | 76.6 |
| Msa1238190 | AT2G01530.1 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.44e-17 | 73.9 |
| Msa1238190 | AT4G23680.1 | 30.435 | 161 | 93 | 5 | 1 | 152 | 1 | 151 | 5.50e-17 | 73.6 |
| Msa1238190 | AT1G14950.1 | 30.818 | 159 | 93 | 4 | 1 | 151 | 1 | 150 | 8.28e-17 | 73.2 |
| Msa1238190 | AT1G35260.1 | 25.828 | 151 | 108 | 3 | 2 | 150 | 1 | 149 | 1.38e-16 | 72.4 |
| Msa1238190 | AT1G35310.1 | 27.338 | 139 | 98 | 3 | 13 | 150 | 12 | 148 | 5.16e-16 | 70.9 |
| Msa1238190 | AT1G24020.1 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa1238190 | AT1G24020.2 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa1238190 | AT1G30990.1 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 2.03e-15 | 69.3 |
| Msa1238190 | AT1G14940.1 | 28.758 | 153 | 106 | 3 | 1 | 152 | 1 | 151 | 6.46e-15 | 68.2 |
| Msa1238190 | AT1G14960.1 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 4.99e-14 | 65.9 |
| Msa1238190 | AT3G26460.1 | 27.922 | 154 | 107 | 4 | 1 | 152 | 1 | 152 | 3.02e-12 | 60.8 |
| Msa1238190 | AT3G26450.1 | 27.329 | 161 | 99 | 5 | 1 | 152 | 1 | 152 | 1.11e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGCAAATCTCTATTTA+AGG | 0.136603 | 8_2:+18153801 | None:intergenic |
| TTTATACATCACATGATTTA+AGG | 0.146064 | 8_2:-18156493 | None:intergenic |
| CTTGATGCAGTTTAGTTTCA+TGG | 0.232611 | 8_2:-18153989 | None:intergenic |
| AATAAGCAGTTATGACTTAA+TGG | 0.241177 | 8_2:+18156341 | Msa1238190:three_prime_UTR |
| AAAATCACTTTCAAGCTCTT+TGG | 0.248666 | 8_2:+18156090 | Msa1238190:CDS |
| TCATGTGATGTATAAATAAA+TGG | 0.259742 | 8_2:+18156500 | Msa1238190:three_prime_UTR |
| CAAATCTCTATTTAAGGCTT+GGG | 0.268383 | 8_2:+18153807 | Msa1238190:five_prime_UTR |
| AAAATCAACCGAAGCTAATA+TGG | 0.272162 | 8_2:-18156430 | None:intergenic |
| GTGGAAGTGCTGCTGTTAAA+TGG | 0.283929 | 8_2:+18156175 | Msa1238190:CDS |
| ATCCATGTCTCTAGTGCTTT+TGG | 0.286969 | 8_2:-18156262 | None:intergenic |
| GGTAAAATTAGCACCGAAAT+AGG | 0.289299 | 8_2:+18153888 | Msa1238190:CDS |
| TGATCCTCCAAATGGCTATA+TGG | 0.321241 | 8_2:+18156230 | Msa1238190:CDS |
| GGATGCTTTAACACCTATTT+CGG | 0.330979 | 8_2:-18153901 | None:intergenic |
| ATTCTTTATGACTTATCAAT+TGG | 0.363337 | 8_2:-18156312 | None:intergenic |
| GCAAATCTCTATTTAAGGCT+TGG | 0.394267 | 8_2:+18153806 | Msa1238190:five_prime_UTR |
| CAGCCTTATCAATTACTTCA+AGG | 0.406054 | 8_2:-18156152 | None:intergenic |
| ATCACTTTCAAGCTCTTTGG+TGG | 0.431743 | 8_2:+18156093 | Msa1238190:CDS |
| TATAAATAAATGGATATTTG+TGG | 0.437077 | 8_2:+18156510 | Msa1238190:three_prime_UTR |
| TTGCATAGCCATATTAGCTT+CGG | 0.441864 | 8_2:+18156422 | Msa1238190:three_prime_UTR |
| AGACATTGATGAACACTATA+AGG | 0.467942 | 8_2:+18156116 | Msa1238190:CDS |
| CAAGGGATAATATGAGCAAC+TGG | 0.471351 | 8_2:-18153837 | None:intergenic |
| AATTAGTGTGATGTTTGTAA+TGG | 0.472531 | 8_2:+18156387 | Msa1238190:three_prime_UTR |
| TGAGAATAGTTTAAAGAACT+TGG | 0.479866 | 8_2:-18153928 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.481361 | 8_2:+18156149 | Msa1238190:CDS |
| AAACAGTGGACTTATGTCAT+AGG | 0.490184 | 8_2:+18154041 | Msa1238190:CDS |
| AAGTAGTCCATATAGCCATT+TGG | 0.505544 | 8_2:-18156237 | None:intergenic |
| GAGGATATTGATCCTCCAAA+TGG | 0.518489 | 8_2:+18156222 | Msa1238190:CDS |
| AACTGCATCAAGGTGATGAC+TGG | 0.533533 | 8_2:+18154000 | Msa1238190:CDS |
| CAAGATCTTCAATAATCTCA+TGG | 0.543904 | 8_2:-18156053 | None:intergenic |
| CTTGAAGTAATTGATAAGGC+TGG | 0.549528 | 8_2:+18156153 | Msa1238190:CDS |
| AAATCTCTATTTAAGGCTTG+GGG | 0.555875 | 8_2:+18153808 | Msa1238190:five_prime_UTR |
| TAATTATAAAATAACGACTT+AGG | 0.558419 | 8_2:-18156369 | None:intergenic |
| TTTCATGGACTCTTTCACAA+AGG | 0.579358 | 8_2:-18153974 | None:intergenic |
| TAGTTTAAAGAACTTGGCAG+AGG | 0.580442 | 8_2:-18153922 | None:intergenic |
| CATGAAACTAAACTGCATCA+AGG | 0.587212 | 8_2:+18153990 | Msa1238190:CDS |
| TAGTCCATATAGCCATTTGG+AGG | 0.593989 | 8_2:-18156234 | None:intergenic |
| CATGGATGCTCATCTTGTCA+AGG | 0.600309 | 8_2:+18156278 | Msa1238190:CDS |
| GTGTGATGTTTGTAATGGCA+TGG | 0.608990 | 8_2:+18156392 | Msa1238190:three_prime_UTR |
| GAAGTAATTGATAAGGCTGG+TGG | 0.619376 | 8_2:+18156156 | Msa1238190:CDS |
| TGCCAAAAGCACTAGAGACA+TGG | 0.621841 | 8_2:+18156260 | Msa1238190:CDS |
| ACATCACAACACAGATGGCA+AGG | 0.623787 | 8_2:+18156020 | Msa1238190:intron |
| GCTCTGATTCACTTAAACAG+TGG | 0.634288 | 8_2:+18154027 | Msa1238190:CDS |
| TGAATATGAGAAAATCAATG+AGG | 0.668209 | 8_2:+18156203 | Msa1238190:CDS |
| CATCAAGGTGATGACTGGCA+TGG | 0.672723 | 8_2:+18154005 | Msa1238190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAACTCTTATTTTTTT+TGG | - | chr8_2:18154528-18154547 | None:intergenic | 10.0% |
| !!! | AAAAAAATAAGAGTTTTTTA+AGG | + | chr8_2:18154528-18154547 | Msa1238190:intron | 10.0% |
| !!! | TAAAAGTTTAAAGTTTTTAA+AGG | + | chr8_2:18154557-18154576 | Msa1238190:intron | 10.0% |
| !! | GAAAATAAATATTATTTGTA+TGG | - | chr8_2:18154801-18154820 | None:intergenic | 10.0% |
| !! | AAGAATCTAATTAATAAATT+TGG | - | chr8_2:18155062-18155081 | None:intergenic | 10.0% |
| !! | TTAAACTAATCTATCAAAAT+TGG | + | chr8_2:18154247-18154266 | Msa1238190:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTGTTG+AGG | - | chr8_2:18154369-18154388 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGATTTTTGTG+CGG | + | chr8_2:18154378-18154397 | Msa1238190:intron | 15.0% |
| !!! | TTATTTTAACGTGAAATATT+CGG | + | chr8_2:18154621-18154640 | Msa1238190:intron | 15.0% |
| !!! | TTATTTTTACGTGAAATAAT+CGG | + | chr8_2:18154770-18154789 | Msa1238190:intron | 15.0% |
| !!! | TATTGCTTTGTTTAATTAAA+CGG | - | chr8_2:18154854-18154873 | None:intergenic | 15.0% |
| !! | AATATATTGATACATTGTAA+TGG | + | chr8_2:18154870-18154889 | Msa1238190:intron | 15.0% |
| !!! | TATTTGTACAAATATCATTT+TGG | - | chr8_2:18154900-18154919 | None:intergenic | 15.0% |
| !! | AAAGAAAATAGATAAAAAGT+TGG | + | chr8_2:18155026-18155045 | Msa1238190:intron | 15.0% |
| !!! | AATTATGTTTTTATCTTTGA+AGG | + | chr8_2:18155185-18155204 | Msa1238190:intron | 15.0% |
| !! | ATAAAAAACAATAGATAGAA+AGG | - | chr8_2:18155351-18155370 | None:intergenic | 15.0% |
| !! | TTACTAACAACAATTAATAA+GGG | - | chr8_2:18155528-18155547 | None:intergenic | 15.0% |
| !! | TTTACTAACAACAATTAATA+AGG | - | chr8_2:18155529-18155548 | None:intergenic | 15.0% |
| !! | TTTATTTATCATGATATTGA+TGG | + | chr8_2:18155697-18155716 | Msa1238190:intron | 15.0% |
| !! | TAATTATAAAATAACGACTT+AGG | - | chr8_2:18156372-18156391 | None:intergenic | 15.0% |
| !! | TATAAATAAATGGATATTTG+TGG | + | chr8_2:18156510-18156529 | Msa1238190:three_prime_UTR | 15.0% |
| !! | TAAAATAAAACAAGATGACT+TGG | - | chr8_2:18154099-18154118 | None:intergenic | 20.0% |
| !!! | CTAATCTTTTTGTTTTGAAT+AGG | + | chr8_2:18154224-18154243 | Msa1238190:intron | 20.0% |
| !!! | TATTTTAACGTGAAATATTC+GGG | + | chr8_2:18154622-18154641 | Msa1238190:intron | 20.0% |
| !! | ATATTAAAGGTTGTATGATT+AGG | + | chr8_2:18154721-18154740 | Msa1238190:intron | 20.0% |
| !! | TATTAAAGGTTGTATGATTA+GGG | + | chr8_2:18154722-18154741 | Msa1238190:intron | 20.0% |
| !!! | TATTTTTACGTGAAATAATC+GGG | + | chr8_2:18154771-18154790 | Msa1238190:intron | 20.0% |
| !!! | ATTGCTTTGTTTAATTAAAC+GGG | - | chr8_2:18154853-18154872 | None:intergenic | 20.0% |
| !!! | ATTAATAAATTTGGAATTGC+AGG | - | chr8_2:18155053-18155072 | None:intergenic | 20.0% |
| !! | AAAGGAAAAAAAAAAGTGAA+AGG | - | chr8_2:18155333-18155352 | None:intergenic | 20.0% |
| !! | TGTTAGTAAAGTAGTTAAAT+TGG | + | chr8_2:18155539-18155558 | Msa1238190:intron | 20.0% |
| !!! | ATCTTACCATTTGTTAAATT+CGG | + | chr8_2:18155913-18155932 | Msa1238190:intron | 20.0% |
| !! | GTCATATATGTATATATACA+GGG | + | chr8_2:18155935-18155954 | Msa1238190:intron | 20.0% |
| !! | ATTCTTTATGACTTATCAAT+TGG | - | chr8_2:18156315-18156334 | None:intergenic | 20.0% |
| !! | TTTATACATCACATGATTTA+AGG | - | chr8_2:18156496-18156515 | None:intergenic | 20.0% |
| !! | TCATGTGATGTATAAATAAA+TGG | + | chr8_2:18156500-18156519 | Msa1238190:three_prime_UTR | 20.0% |
| ! | TGAGAATAGTTTAAAGAACT+TGG | - | chr8_2:18153931-18153950 | None:intergenic | 25.0% |
| ! | TGGTTAAAAATCTGAAGAAA+TGG | + | chr8_2:18154343-18154362 | Msa1238190:intron | 25.0% |
| ! | TTCAGCAGAAATAAACTTTA+TGG | - | chr8_2:18154440-18154459 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGTTGTACGATT+AGG | + | chr8_2:18154570-18154589 | Msa1238190:intron | 25.0% |
| !!! | TTTTAAAGGTTGTACGATTA+GGG | + | chr8_2:18154571-18154590 | Msa1238190:intron | 25.0% |
| !!! | ATTTTAACGTGAAATATTCG+GGG | + | chr8_2:18154623-18154642 | Msa1238190:intron | 25.0% |
| !! | ATTTTTACGTGAAATAATCG+GGG | + | chr8_2:18154772-18154791 | Msa1238190:intron | 25.0% |
| ! | TACATGTTAAAGTACAAATG+AGG | + | chr8_2:18155117-18155136 | Msa1238190:intron | 25.0% |
| !!! | TCTTTTTAGTTTACGACTAT+TGG | + | chr8_2:18155154-18155173 | Msa1238190:intron | 25.0% |
| !! | GAGTTTAAGAGCATAAAAAA+TGG | - | chr8_2:18155295-18155314 | None:intergenic | 25.0% |
| !!! | AGGTTTGTGCATTATTTTTA+AGG | + | chr8_2:18155448-18155467 | Msa1238190:intron | 25.0% |
| ! | AGTAAAGTAGTTAAATTGGA+TGG | + | chr8_2:18155543-18155562 | Msa1238190:intron | 25.0% |
| ! | ACACATGTAAAACAAGTTTA+AGG | + | chr8_2:18155826-18155845 | Msa1238190:intron | 25.0% |
| ! | AGTATACTGAATTGAATTCA+CGG | - | chr8_2:18155858-18155877 | None:intergenic | 25.0% |
| ! | ATATGACCGAATTTAACAAA+TGG | - | chr8_2:18155922-18155941 | None:intergenic | 25.0% |
| ! | GGTCATATATGTATATATAC+AGG | + | chr8_2:18155934-18155953 | Msa1238190:intron | 25.0% |
| ! | TGAATATGAGAAAATCAATG+AGG | + | chr8_2:18156203-18156222 | Msa1238190:CDS | 25.0% |
| ! | AATAAGCAGTTATGACTTAA+TGG | + | chr8_2:18156341-18156360 | Msa1238190:three_prime_UTR | 25.0% |
| ! | AATTAGTGTGATGTTTGTAA+TGG | + | chr8_2:18156387-18156406 | Msa1238190:three_prime_UTR | 25.0% |
| ! | CAAATCTCTATTTAAGGCTT+GGG | + | chr8_2:18153807-18153826 | Msa1238190:five_prime_UTR | 30.0% |
| ! | AAATCTCTATTTAAGGCTTG+GGG | + | chr8_2:18153808-18153827 | Msa1238190:five_prime_UTR | 30.0% |
| !! | TTTCACAAAGGTTTTGTACA+TGG | - | chr8_2:18153965-18153984 | None:intergenic | 30.0% |
| AGTTGAGTTCTGTATGATTT+CGG | + | chr8_2:18154194-18154213 | Msa1238190:intron | 30.0% | |
| AATAGATTCCTATGAGTTGT+CGG | + | chr8_2:18154950-18154969 | Msa1238190:intron | 30.0% | |
| TTCAAGTAACTACGAAAATG+AGG | + | chr8_2:18155399-18155418 | Msa1238190:intron | 30.0% | |
| TATTGCGTTAGTTAGTGTTT+GGG | - | chr8_2:18155741-18155760 | None:intergenic | 30.0% | |
| TTATTGCGTTAGTTAGTGTT+TGG | - | chr8_2:18155742-18155761 | None:intergenic | 30.0% | |
| CAAGATCTTCAATAATCTCA+TGG | - | chr8_2:18156056-18156075 | None:intergenic | 30.0% | |
| AAAATCACTTTCAAGCTCTT+TGG | + | chr8_2:18156090-18156109 | Msa1238190:CDS | 30.0% | |
| AGACATTGATGAACACTATA+AGG | + | chr8_2:18156116-18156135 | Msa1238190:CDS | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8_2:18156149-18156168 | Msa1238190:CDS | 30.0% | |
| AAAATCAACCGAAGCTAATA+TGG | - | chr8_2:18156433-18156452 | None:intergenic | 30.0% | |
| ! | GCAAATCTCTATTTAAGGCT+TGG | + | chr8_2:18153806-18153825 | Msa1238190:five_prime_UTR | 35.0% |
| !! | TTTTTGGGAGAAACAAGCAA+GGG | - | chr8_2:18153857-18153876 | None:intergenic | 35.0% |
| !! | ATTTTTGGGAGAAACAAGCA+AGG | - | chr8_2:18153858-18153877 | None:intergenic | 35.0% |
| ! | TTGCTTGTTTCTCCCAAAAA+TGG | + | chr8_2:18153857-18153876 | Msa1238190:exon | 35.0% |
| ! | GGTAAAATTAGCACCGAAAT+AGG | + | chr8_2:18153888-18153907 | Msa1238190:CDS | 35.0% |
| GGATGCTTTAACACCTATTT+CGG | - | chr8_2:18153904-18153923 | None:intergenic | 35.0% | |
| TAGTTTAAAGAACTTGGCAG+AGG | - | chr8_2:18153925-18153944 | None:intergenic | 35.0% | |
| TTTCATGGACTCTTTCACAA+AGG | - | chr8_2:18153977-18153996 | None:intergenic | 35.0% | |
| ! | CTTGATGCAGTTTAGTTTCA+TGG | - | chr8_2:18153992-18154011 | None:intergenic | 35.0% |
| CATGAAACTAAACTGCATCA+AGG | + | chr8_2:18153990-18154009 | Msa1238190:CDS | 35.0% | |
| ! | AAACAGTGGACTTATGTCAT+AGG | + | chr8_2:18154041-18154060 | Msa1238190:CDS | 35.0% |
| CATACAGAACTCAACTAACA+AGG | - | chr8_2:18154190-18154209 | None:intergenic | 35.0% | |
| CTAAGATCACAAACACAACT+AGG | + | chr8_2:18154310-18154329 | Msa1238190:intron | 35.0% | |
| GCATACGAAATAGTCGTTTA+AGG | + | chr8_2:18155428-18155447 | Msa1238190:intron | 35.0% | |
| ! | TTGACTTTTATGCGTTAGTG+TGG | + | chr8_2:18155774-18155793 | Msa1238190:intron | 35.0% |
| ! | TGACTTTTATGCGTTAGTGT+GGG | + | chr8_2:18155775-18155794 | Msa1238190:intron | 35.0% |
| ! | CAGCCTTATCAATTACTTCA+AGG | - | chr8_2:18156155-18156174 | None:intergenic | 35.0% |
| CTTGAAGTAATTGATAAGGC+TGG | + | chr8_2:18156153-18156172 | Msa1238190:CDS | 35.0% | |
| AAGTAGTCCATATAGCCATT+TGG | - | chr8_2:18156240-18156259 | None:intergenic | 35.0% | |
| ! | TTGCATAGCCATATTAGCTT+CGG | + | chr8_2:18156422-18156441 | Msa1238190:three_prime_UTR | 35.0% |
| !! | CGGTTGATTTTTCGTTTGTA+TGG | + | chr8_2:18156442-18156461 | Msa1238190:three_prime_UTR | 35.0% |
| CAAGGGATAATATGAGCAAC+TGG | - | chr8_2:18153840-18153859 | None:intergenic | 40.0% | |
| GCTCTGATTCACTTAAACAG+TGG | + | chr8_2:18154027-18154046 | Msa1238190:CDS | 40.0% | |
| CACAACTAGGTCAACTTAGT+TGG | + | chr8_2:18154323-18154342 | Msa1238190:intron | 40.0% | |
| CTTAGTTACCGACAACTCAT+AGG | - | chr8_2:18154961-18154980 | None:intergenic | 40.0% | |
| CTATGAGTTGTCGGTAACTA+AGG | + | chr8_2:18154959-18154978 | Msa1238190:intron | 40.0% | |
| ! | GACTTTTATGCGTTAGTGTG+GGG | + | chr8_2:18155776-18155795 | Msa1238190:intron | 40.0% |
| CATCTGTGTTGTGATGTCAT+GGG | - | chr8_2:18156017-18156036 | None:intergenic | 40.0% | |
| ATCACTTTCAAGCTCTTTGG+TGG | + | chr8_2:18156093-18156112 | Msa1238190:CDS | 40.0% | |
| GAAGTAATTGATAAGGCTGG+TGG | + | chr8_2:18156156-18156175 | Msa1238190:CDS | 40.0% | |
| GAGGATATTGATCCTCCAAA+TGG | + | chr8_2:18156222-18156241 | Msa1238190:CDS | 40.0% | |
| TGATCCTCCAAATGGCTATA+TGG | + | chr8_2:18156230-18156249 | Msa1238190:CDS | 40.0% | |
| TAGTCCATATAGCCATTTGG+AGG | - | chr8_2:18156237-18156256 | None:intergenic | 40.0% | |
| ! | ATCCATGTCTCTAGTGCTTT+TGG | - | chr8_2:18156265-18156284 | None:intergenic | 40.0% |
| GTGTGATGTTTGTAATGGCA+TGG | + | chr8_2:18156392-18156411 | Msa1238190:three_prime_UTR | 40.0% | |
| !! | TACCAGCGAGCACCATTTTT+GGG | - | chr8_2:18153872-18153891 | None:intergenic | 45.0% |
| ! | TTACCAGCGAGCACCATTTT+TGG | - | chr8_2:18153873-18153892 | None:intergenic | 45.0% |
| AACTGCATCAAGGTGATGAC+TGG | + | chr8_2:18154000-18154019 | Msa1238190:CDS | 45.0% | |
| ! | TTTTATGCGTTAGTGTGGGG+TGG | + | chr8_2:18155779-18155798 | Msa1238190:intron | 45.0% |
| TTTATGCGTTAGTGTGGGGT+GGG | + | chr8_2:18155780-18155799 | Msa1238190:intron | 45.0% | |
| CCATCTGTGTTGTGATGTCA+TGG | - | chr8_2:18156018-18156037 | None:intergenic | 45.0% | |
| CCATGACATCACAACACAGA+TGG | + | chr8_2:18156015-18156034 | Msa1238190:intron | 45.0% | |
| ACATCACAACACAGATGGCA+AGG | + | chr8_2:18156020-18156039 | Msa1238190:intron | 45.0% | |
| !! | GTGGAAGTGCTGCTGTTAAA+TGG | + | chr8_2:18156175-18156194 | Msa1238190:CDS | 45.0% |
| !! | TGCCAAAAGCACTAGAGACA+TGG | + | chr8_2:18156260-18156279 | Msa1238190:CDS | 45.0% |
| CATGGATGCTCATCTTGTCA+AGG | + | chr8_2:18156278-18156297 | Msa1238190:CDS | 45.0% | |
| !! | TATATATGTATATATATTAA+AGG | + | chr8_2:18154708-18154727 | Msa1238190:intron | 5.0% |
| !!! | TAAAAAAAAAGTTTTTAAAT+GGG | - | chr8_2:18155264-18155283 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAAAGTTTTTAAA+TGG | - | chr8_2:18155265-18155284 | None:intergenic | 5.0% |
| CATCAAGGTGATGACTGGCA+TGG | + | chr8_2:18154005-18154024 | Msa1238190:CDS | 50.0% | |
| TTATGCGTTAGTGTGGGGTG+GGG | + | chr8_2:18155781-18155800 | Msa1238190:intron | 50.0% | |
| CTCCCAAAAATGGTGCTCGC+TGG | + | chr8_2:18153867-18153886 | Msa1238190:exon | 55.0% | |
| TATGCGTTAGTGTGGGGTGG+GGG | + | chr8_2:18155782-18155801 | Msa1238190:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 18153806 | 18156548 | 18153806 | ID=Msa1238190;Name=Msa1238190 |
| chr8_2 | mRNA | 18153806 | 18156548 | 18153806 | ID=Msa1238190-mRNA-1;Parent=Msa1238190;Name=Msa1238190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=70|1|1|1|1|1|2|243|152 |
| chr8_2 | exon | 18153806 | 18154062 | 18153806 | ID=Msa1238190-mRNA-1:exon:6863;Parent=Msa1238190-mRNA-1 |
| chr8_2 | exon | 18156034 | 18156548 | 18156034 | ID=Msa1238190-mRNA-1:exon:6864;Parent=Msa1238190-mRNA-1 |
| chr8_2 | five_prime_UTR | 18153806 | 18153875 | 18153806 | ID=Msa1238190-mRNA-1:five_prime_utr;Parent=Msa1238190-mRNA-1 |
| chr8_2 | CDS | 18153876 | 18154062 | 18153876 | ID=Msa1238190-mRNA-1:cds;Parent=Msa1238190-mRNA-1 |
| chr8_2 | CDS | 18156034 | 18156305 | 18156034 | ID=Msa1238190-mRNA-1:cds;Parent=Msa1238190-mRNA-1 |
| chr8_2 | three_prime_UTR | 18156306 | 18156548 | 18156306 | ID=Msa1238190-mRNA-1:three_prime_utr;Parent=Msa1238190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
