Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529110 | XP_013455238.1 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 1.78e-43 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529110 | I3S093 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 8.50e-44 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025560 | Msa0529110 | 0.803708 | 3.064219e-49 | -8.615850e-47 |
| Msa0052780 | Msa0529110 | 0.809304 | 2.021683e-50 | -8.615850e-47 |
| Msa0095940 | Msa0529110 | 0.827640 | 1.398844e-54 | -8.615850e-47 |
| Msa0097570 | Msa0529110 | 0.812521 | 4.066058e-51 | -8.615850e-47 |
| Msa0101530 | Msa0529110 | 0.823120 | 1.643459e-53 | -8.615850e-47 |
| Msa0121300 | Msa0529110 | 0.806216 | 9.160215e-50 | -8.615850e-47 |
| Msa0135030 | Msa0529110 | 0.820760 | 5.785520e-53 | -8.615850e-47 |
| Msa0166190 | Msa0529110 | 0.801862 | 7.368916e-49 | -8.615850e-47 |
| Msa0178840 | Msa0529110 | -0.802185 | 6.325063e-49 | -8.615850e-47 |
| Msa0192870 | Msa0529110 | 0.814344 | 1.616385e-51 | -8.615850e-47 |
| Msa0193950 | Msa0529110 | 0.816105 | 6.563688e-52 | -8.615850e-47 |
| Msa0235000 | Msa0529110 | 0.825547 | 4.416055e-54 | -8.615850e-47 |
| Msa0375790 | Msa0529110 | 0.813601 | 2.356730e-51 | -8.615850e-47 |
| Msa0405460 | Msa0529110 | -0.809564 | 1.777974e-50 | -8.615850e-47 |
| Msa0405470 | Msa0529110 | -0.812026 | 5.213868e-51 | -8.615850e-47 |
| Msa0405550 | Msa0529110 | -0.801517 | 8.672858e-49 | -8.615850e-47 |
| Msa0433050 | Msa0529110 | 0.802923 | 4.454663e-49 | -8.615850e-47 |
| Msa0480900 | Msa0529110 | -0.815461 | 9.136359e-52 | -8.615850e-47 |
| Msa0269170 | Msa0529110 | -0.808291 | 3.329428e-50 | -8.615850e-47 |
| Msa0273400 | Msa0529110 | 0.851988 | 6.198734e-61 | -8.615850e-47 |
| Msa0285890 | Msa0529110 | 0.806719 | 7.177383e-50 | -8.615850e-47 |
| Msa0286360 | Msa0529110 | 0.814583 | 1.431172e-51 | -8.615850e-47 |
| Msa0287480 | Msa0529110 | 0.803004 | 4.287670e-49 | -8.615850e-47 |
| Msa0313660 | Msa0529110 | 0.829881 | 4.017165e-55 | -8.615850e-47 |
| Msa0314240 | Msa0529110 | 0.800024 | 1.750082e-48 | -8.615850e-47 |
| Msa0320170 | Msa0529110 | 0.800011 | 1.760747e-48 | -8.615850e-47 |
| Msa0345050 | Msa0529110 | 0.808920 | 2.442819e-50 | -8.615850e-47 |
| Msa0345890 | Msa0529110 | 0.802351 | 5.845192e-49 | -8.615850e-47 |
| Msa0483970 | Msa0529110 | -0.811104 | 8.272560e-51 | -8.615850e-47 |
| Msa0490320 | Msa0529110 | 0.803228 | 3.852514e-49 | -8.615850e-47 |
| Msa0524670 | Msa0529110 | 0.809574 | 1.769102e-50 | -8.615850e-47 |
| Msa0529110 | Msa0531050 | 0.817975 | 2.494796e-52 | -8.615850e-47 |
| Msa0529110 | Msa0534610 | 0.813083 | 3.063402e-51 | -8.615850e-47 |
| Msa0529110 | Msa0535400 | 0.807388 | 5.179755e-50 | -8.615850e-47 |
| Msa0529110 | Msa0566280 | 0.804477 | 2.120386e-49 | -8.615850e-47 |
| Msa0529110 | Msa0581350 | 0.801150 | 1.031209e-48 | -8.615850e-47 |
| Msa0529110 | Msa0588040 | 0.814195 | 1.743809e-51 | -8.615850e-47 |
| Msa0529110 | Msa0590620 | -0.833148 | 6.297048e-56 | -8.615850e-47 |
| Msa0529110 | Msa0590810 | 0.818141 | 2.288924e-52 | -8.615850e-47 |
| Msa0529110 | Msa0591250 | -0.800846 | 1.189905e-48 | -8.615850e-47 |
| Msa0529110 | Msa0595270 | 0.995350 | 2.100050e-215 | -8.615850e-47 |
| Msa0529110 | Msa0603310 | 0.819894 | 9.135966e-53 | -8.615850e-47 |
| Msa0529110 | Msa0626920 | 0.812493 | 4.123580e-51 | -8.615850e-47 |
| Msa0529110 | Msa0631130 | 0.811932 | 5.466315e-51 | -8.615850e-47 |
| Msa0529110 | Msa0637590 | 0.804325 | 2.280618e-49 | -8.615850e-47 |
| Msa0529110 | Msa0644340 | 0.803624 | 3.189014e-49 | -8.615850e-47 |
| Msa0529110 | Msa0682910 | 0.810188 | 1.305000e-50 | -8.615850e-47 |
| Msa0529110 | Msa0719600 | 0.805141 | 1.540456e-49 | -8.615850e-47 |
| Msa0529110 | Msa0742370 | -0.817390 | 3.381056e-52 | -8.615850e-47 |
| Msa0529110 | Msa0743370 | 0.816022 | 6.849603e-52 | -8.615850e-47 |
| Msa0529110 | Msa0744640 | 0.847349 | 1.223628e-59 | -8.615850e-47 |
| Msa0529110 | Msa0744710 | 0.809169 | 2.161041e-50 | -8.615850e-47 |
| Msa0529110 | Msa0778570 | 0.800457 | 1.428751e-48 | -8.615850e-47 |
| Msa0529110 | Msa0779450 | -0.807956 | 3.922762e-50 | -8.615850e-47 |
| Msa0529110 | Msa0795860 | 0.816229 | 6.157851e-52 | -8.615850e-47 |
| Msa0529110 | Msa0800150 | 0.824900 | 6.283693e-54 | -8.615850e-47 |
| Msa0529110 | Msa0800180 | 0.807039 | 6.139669e-50 | -8.615850e-47 |
| Msa0529110 | Msa0810330 | 0.812785 | 3.559243e-51 | -8.615850e-47 |
| Msa0529110 | Msa0826240 | 0.808727 | 2.686946e-50 | -8.615850e-47 |
| Msa0529110 | Msa0829990 | 0.803123 | 4.050539e-49 | -8.615850e-47 |
| Msa0529110 | Msa0833270 | 0.825871 | 3.700541e-54 | -8.615850e-47 |
| Msa0529110 | Msa0833640 | 0.805616 | 1.225184e-49 | -8.615850e-47 |
| Msa0529110 | Msa0841730 | 0.847418 | 1.171477e-59 | -8.615850e-47 |
| Msa0529110 | Msa0850640 | 0.816555 | 5.205876e-52 | -8.615850e-47 |
| Msa0529110 | Msa0862480 | -0.814088 | 1.840361e-51 | -8.615850e-47 |
| Msa0529110 | Msa0867660 | -0.803330 | 3.670482e-49 | -8.615850e-47 |
| Msa0529110 | Msa0870510 | 0.804936 | 1.700644e-49 | -8.615850e-47 |
| Msa0529110 | Msa0873910 | 0.804827 | 1.792295e-49 | -8.615850e-47 |
| Msa0529110 | Msa0901270 | 0.821136 | 4.739739e-53 | -8.615850e-47 |
| Msa0529110 | Msa0905570 | 0.832919 | 7.181518e-56 | -8.615850e-47 |
| Msa0529110 | Msa0908260 | -0.808186 | 3.504286e-50 | -8.615850e-47 |
| Msa0529110 | Msa0908270 | -0.801010 | 1.101374e-48 | -8.615850e-47 |
| Msa0529110 | Msa0908470 | -0.802504 | 5.436467e-49 | -8.615850e-47 |
| Msa0529110 | Msa0908510 | -0.800742 | 1.249697e-48 | -8.615850e-47 |
| Msa0529110 | Msa0908630 | -0.807297 | 5.415121e-50 | -8.615850e-47 |
| Msa0529110 | Msa0908690 | -0.812738 | 3.646011e-51 | -8.615850e-47 |
| Msa0529110 | Msa0908700 | -0.800546 | 1.369765e-48 | -8.615850e-47 |
| Msa0529110 | Msa0909260 | 0.804613 | 1.986180e-49 | -8.615850e-47 |
| Msa0529110 | Msa0924840 | -0.808995 | 2.354080e-50 | -8.615850e-47 |
| Msa0529110 | Msa0924900 | -0.805871 | 1.082980e-49 | -8.615850e-47 |
| Msa0529110 | Msa0940910 | 0.839964 | 1.156199e-57 | -8.615850e-47 |
| Msa0529110 | Msa0946330 | 0.811434 | 7.014158e-51 | -8.615850e-47 |
| Msa0529110 | Msa0966580 | 0.806688 | 7.283314e-50 | -8.615850e-47 |
| Msa0529110 | Msa0966590 | 0.804709 | 1.896563e-49 | -8.615850e-47 |
| Msa0529110 | Msa0983600 | -0.808081 | 3.690499e-50 | -8.615850e-47 |
| Msa0529110 | Msa0983610 | -0.807569 | 4.741862e-50 | -8.615850e-47 |
| Msa0529110 | Msa1001120 | 0.816468 | 5.445525e-52 | -8.615850e-47 |
| Msa0529110 | Msa1019420 | 0.831323 | 1.781755e-55 | -8.615850e-47 |
| Msa0529110 | Msa1035050 | 0.801760 | 7.733246e-49 | -8.615850e-47 |
| Msa0529110 | Msa1069340 | 0.810877 | 9.262991e-51 | -8.615850e-47 |
| Msa0529110 | Msa1075090 | 0.804824 | 1.794575e-49 | -8.615850e-47 |
| Msa0529110 | Msa1086760 | -0.804192 | 2.430443e-49 | -8.615850e-47 |
| Msa0529110 | Msa1086770 | -0.802177 | 6.349738e-49 | -8.615850e-47 |
| Msa0529110 | Msa1086940 | -0.805247 | 1.463512e-49 | -8.615850e-47 |
| Msa0529110 | Msa1087070 | -0.816672 | 4.900617e-52 | -8.615850e-47 |
| Msa0529110 | Msa1087080 | -0.804712 | 1.893908e-49 | -8.615850e-47 |
| Msa0529110 | Msa1087090 | -0.804509 | 2.087855e-49 | -8.615850e-47 |
| Msa0529110 | Msa1089990 | 0.939061 | 2.388849e-99 | -8.615850e-47 |
| Msa0529110 | Msa1107220 | 0.817448 | 3.280136e-52 | -8.615850e-47 |
| Msa0529110 | Msa1107250 | 0.806336 | 8.644338e-50 | -8.615850e-47 |
| Msa0529110 | Msa1115980 | 0.800744 | 1.248422e-48 | -8.615850e-47 |
| Msa0529110 | Msa1159170 | 0.806909 | 6.541678e-50 | -8.615850e-47 |
| Msa0529110 | Msa1173150 | 0.806462 | 8.128977e-50 | -8.615850e-47 |
| Msa0529110 | Msa1202110 | 0.813916 | 2.008502e-51 | -8.615850e-47 |
| Msa0529110 | Msa1202800 | 0.829614 | 4.664626e-55 | -8.615850e-47 |
| Msa0529110 | Msa1207920 | -0.803478 | 3.419327e-49 | -8.615850e-47 |
| Msa0529110 | Msa1221270 | 0.813014 | 3.172113e-51 | -8.615850e-47 |
| Msa0529110 | Msa1223710 | 0.814883 | 1.228049e-51 | -8.615850e-47 |
| Msa0529110 | Msa1238190 | 0.805718 | 1.166068e-49 | -8.615850e-47 |
| Msa0529110 | Msa1254870 | 0.811754 | 5.976905e-51 | -8.615850e-47 |
| Msa0529110 | Msa1255210 | 0.824427 | 8.118322e-54 | -8.615850e-47 |
| Msa0529110 | Msa1268390 | 0.812333 | 4.468453e-51 | -8.615850e-47 |
| Msa0529110 | Msa1268420 | 0.806051 | 9.925106e-50 | -8.615850e-47 |
| Msa0529110 | Msa1269200 | 0.819286 | 1.258103e-52 | -8.615850e-47 |
| Msa0529110 | Msa1284020 | 0.808562 | 2.913561e-50 | -8.615850e-47 |
| Msa0529110 | Msa1295650 | 0.821075 | 4.896944e-53 | -8.615850e-47 |
| Msa0529110 | Msa1322960 | 0.802730 | 4.883037e-49 | -8.615850e-47 |
| Msa0529110 | Msa1323010 | 0.810870 | 9.296518e-51 | -8.615850e-47 |
| Msa0529110 | Msa1328430 | 0.811381 | 7.204973e-51 | -8.615850e-47 |
| Msa0529110 | Msa1331570 | -0.825964 | 3.518016e-54 | -8.615850e-47 |
| Msa0529110 | Msa1343600 | 0.800542 | 1.372453e-48 | -8.615850e-47 |
| Msa0529110 | Msa1354360 | -0.802133 | 6.484246e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354400 | -0.802052 | 6.737523e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354520 | -0.808205 | 3.472910e-50 | -8.615850e-47 |
| Msa0529110 | Msa1354530 | -0.802382 | 5.762204e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354650 | -0.805749 | 1.148830e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354660 | -0.805120 | 1.555957e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354780 | -0.806752 | 7.061853e-50 | -8.615850e-47 |
| Msa0529110 | Msa1354790 | -0.804496 | 2.101206e-49 | -8.615850e-47 |
| Msa0529110 | Msa1354960 | -0.804345 | 2.259224e-49 | -8.615850e-47 |
| Msa0529110 | Msa1365990 | -0.803134 | 4.029856e-49 | -8.615850e-47 |
| Msa0529110 | Msa1366020 | -0.806348 | 8.593332e-50 | -8.615850e-47 |
| Msa0529110 | Msa1366030 | -0.806110 | 9.646270e-50 | -8.615850e-47 |
| Msa0529110 | Msa1366060 | -0.805362 | 1.384500e-49 | -8.615850e-47 |
| Msa0529110 | Msa1368260 | -0.810321 | 1.221491e-50 | -8.615850e-47 |
| Msa0529110 | Msa1384700 | 0.819193 | 1.320831e-52 | -8.615850e-47 |
| Msa0529110 | Msa1385360 | -0.803486 | 3.406968e-49 | -8.615850e-47 |
| Msa0529110 | Msa1385390 | -0.805006 | 1.643625e-49 | -8.615850e-47 |
| Msa0529110 | Msa1391130 | -0.810122 | 1.348434e-50 | -8.615850e-47 |
| Msa0529110 | Msa1391140 | -0.809194 | 2.134384e-50 | -8.615850e-47 |
| Msa0529110 | Msa1391260 | -0.810835 | 9.458706e-51 | -8.615850e-47 |
| Msa0529110 | Msa1404050 | 0.831684 | 1.451880e-55 | -8.615850e-47 |
| Msa0529110 | Msa1405530 | 0.816387 | 5.677921e-52 | -8.615850e-47 |
| Msa0529110 | Msa1445530 | 0.807495 | 4.915137e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529110 | MtrunA17_Chr4g0014461 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 1.64e-47 | 145 |
| Msa0529110 | MtrunA17_Chr4g0014431 | 81.013 | 79 | 15 | 0 | 1 | 79 | 1 | 79 | 5.32e-42 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTAATTATGTTGTAATA+TGG | 0.214329 | 4_1:-2444342 | Msa0529110:three_prime_UTR |
| TAATATTATTTACATAATTA+TGG | 0.219522 | 4_1:-2444369 | Msa0529110:three_prime_UTR |
| TGTACTGCTGATTGAAAATA+TGG | 0.233285 | 4_1:-2444449 | Msa0529110:exon |
| ACTCCTATTTGTATGTAATA+TGG | 0.281587 | 4_1:-2444318 | Msa0529110:three_prime_UTR |
| AGGTGTTTATCACCTGTATA+AGG | 0.302748 | 4_1:+2444542 | None:intergenic |
| ATTTGTATGTAATATGGATA+TGG | 0.337532 | 4_1:-2444312 | Msa0529110:three_prime_UTR |
| ATCCTTCTTGTCTTCGTTTG+TGG | 0.338806 | 4_1:-2447705 | Msa0529110:intron |
| TATCCATATTACATACAAAT+AGG | 0.368185 | 4_1:+2444315 | None:intergenic |
| ATGTAATATGGATATGGATA+TGG | 0.371160 | 4_1:-2444306 | Msa0529110:three_prime_UTR |
| AGCAAAATGGCTTTAAAGGT+TGG | 0.418570 | 4_1:-2447732 | None:intergenic |
| AATTGTTGCATTGCATCAAC+TGG | 0.473599 | 4_1:-2444506 | Msa0529110:CDS |
| TACATGACTTGCCCTTATAC+AGG | 0.473979 | 4_1:-2444554 | Msa0529110:CDS |
| GGTGTTTATCACCTGTATAA+GGG | 0.520757 | 4_1:+2444543 | None:intergenic |
| TACCACAAACGAAGACAAGA+AGG | 0.582604 | 4_1:+2447703 | None:intergenic |
| GCAATGCAACAATTGCATGC+TGG | 0.616125 | 4_1:+2444515 | None:intergenic |
| TGTGTACTTTATGAAGCAGA+TGG | 0.632102 | 4_1:-2444482 | Msa0529110:CDS |
| AATATGGATATGGATATGGA+TGG | 0.636950 | 4_1:-2444302 | Msa0529110:three_prime_UTR |
| CTGAATCATAGCAAAACTGA+GGG | 0.651830 | 4_1:+2444582 | None:intergenic |
| ACAAACGAAGACAAGAAGGA+TGG | 0.658438 | 4_1:+2447707 | None:intergenic |
| ACTGAATCATAGCAAAACTG+AGG | 0.661702 | 4_1:+2444581 | None:intergenic |
| AACAATTGCATGCTGGATCG+AGG | 0.699789 | 4_1:+2444522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTTTAAAAAAATA+CGG | + | chr4_1:2446374-2446393 | None:intergenic | 0.0% |
| !!! | ATTTTTTTATTACATAATTG+GGG | + | chr4_1:2445342-2445361 | None:intergenic | 10.0% |
| !!! | TTATTAATTTTTCATTTTTC+CGG | + | chr4_1:2446550-2446569 | None:intergenic | 10.0% |
| !! | AAGAAAAAATTTAAAAATTC+TGG | - | chr4_1:2445557-2445576 | Msa0529110:intron | 10.0% |
| !! | TTTGAAAAAAATTAAAATTC+TGG | - | chr4_1:2445704-2445723 | Msa0529110:intron | 10.0% |
| !! | TTTATTTCCAAAAAAAATTT+CGG | - | chr4_1:2445809-2445828 | Msa0529110:intron | 10.0% |
| !! | TTAATGAAAAATAAAAATTC+TGG | + | chr4_1:2446135-2446154 | None:intergenic | 10.0% |
| !!! | TTAAATTTTAAGAAAAATTC+TGG | + | chr4_1:2446177-2446196 | None:intergenic | 10.0% |
| !! | CTAAAAAAAATTAAAATTCT+GGG | + | chr4_1:2446204-2446223 | None:intergenic | 10.0% |
| !! | TCTAAAAAAAATTAAAATTC+TGG | + | chr4_1:2446205-2446224 | None:intergenic | 10.0% |
| !!! | CAAAATATTTTTATAGTTTT+TGG | + | chr4_1:2446741-2446760 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTGGCTTAAATA+TGG | - | chr4_1:2445181-2445200 | Msa0529110:intron | 15.0% |
| !!! | CAAATTTTTTTTATAGGTTT+TGG | - | chr4_1:2445247-2445266 | Msa0529110:intron | 15.0% |
| !! | TTATTTCCAAAAAAAATTTC+GGG | - | chr4_1:2445810-2445829 | Msa0529110:intron | 15.0% |
| !!! | ATTTTTGTGTATTTATAAAC+CGG | - | chr4_1:2445951-2445970 | Msa0529110:intron | 15.0% |
| !! | TATTTATAAATCGAGAATAT+GGG | - | chr4_1:2445985-2446004 | Msa0529110:intron | 15.0% |
| !!! | ACTATAAAAAAAAATTTTGC+AGG | - | chr4_1:2446681-2446700 | Msa0529110:intron | 15.0% |
| !!! | CTATAAAAAAAAATTTTGCA+GGG | - | chr4_1:2446682-2446701 | Msa0529110:intron | 15.0% |
| !!! | AAACTATAAAAATATTTTGC+AGG | - | chr4_1:2446742-2446761 | Msa0529110:intron | 15.0% |
| !!! | AACTATAAAAATATTTTGCA+GGG | - | chr4_1:2446743-2446762 | Msa0529110:intron | 15.0% |
| !!! | CAAATTTTTTTTATAGGTTT+TGG | + | chr4_1:2445247-2445266 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGGCTTAAATA+TGG | + | chr4_1:2446868-2446887 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTCAAAAAAAAAA+AGG | + | chr4_1:2446879-2446898 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTTTTTGAAAAAA+AGG | - | chr4_1:2446876-2446895 | Msa0529110:intron | 15.0% |
| !!! | ATTTTTTTGTTGAATTGTAT+AGG | + | chr4_1:2447173-2447192 | None:intergenic | 15.0% |
| !! | GAATTAATTATGTTGTAATA+TGG | - | chr4_1:2447608-2447627 | Msa0529110:intron | 15.0% |
| !!! | TTGTTTCTTTTAGCAATTTA+TGG | - | chr4_1:2444309-2444328 | Msa0529110:three_prime_UTR | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr4_1:2444591-2444610 | Msa0529110:CDS | 20.0% |
| !! | TAAACAAACTTTAACTAAAC+CGG | - | chr4_1:2445007-2445026 | Msa0529110:intron | 20.0% |
| !! | ACCTATAAAAAAAATTTGCA+GGG | + | chr4_1:2446804-2446823 | None:intergenic | 20.0% |
| !! | AACCTATAAAAAAAATTTGC+AGG | + | chr4_1:2446803-2446822 | None:intergenic | 20.0% |
| !!! | CGAAGTTTTAATAAAAATTC+AGG | - | chr4_1:2445741-2445760 | Msa0529110:intron | 20.0% |
| !!! | AAAATTCCCGAAATTTTTTT+TGG | + | chr4_1:2445819-2445838 | None:intergenic | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | - | chr4_1:2445842-2445861 | Msa0529110:intron | 20.0% |
| !!! | TTTTTGTGTATTTATAAACC+GGG | - | chr4_1:2445952-2445971 | Msa0529110:intron | 20.0% |
| !! | GTATTTATAAATCGAGAATA+TGG | - | chr4_1:2445984-2446003 | Msa0529110:intron | 20.0% |
| !! | CGGAAAAAAATTAAAAATTC+TGG | + | chr4_1:2446354-2446373 | None:intergenic | 20.0% |
| !! | AACCTATAAAAAAAATTTGC+AGG | - | chr4_1:2446803-2446822 | Msa0529110:intron | 20.0% |
| !! | ACCTATAAAAAAAATTTGCA+GGG | - | chr4_1:2446804-2446823 | Msa0529110:intron | 20.0% |
| !! | TATCCATATTACATACAAAT+AGG | + | chr4_1:2447638-2447657 | None:intergenic | 20.0% |
| !! | ATTTGTATGTAATATGGATA+TGG | - | chr4_1:2447638-2447657 | Msa0529110:intron | 20.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr4_1:2444547-2444566 | Msa0529110:CDS | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr4_1:2444650-2444669 | Msa0529110:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr4_1:2444667-2444686 | Msa0529110:intron | 25.0% |
| ! | TAAAGAAGGTGAATTGATAA+AGG | - | chr4_1:2444681-2444700 | Msa0529110:intron | 25.0% |
| ! | AAAGAAGGTGAATTGATAAA+GGG | - | chr4_1:2444682-2444701 | Msa0529110:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | - | chr4_1:2444702-2444721 | Msa0529110:intron | 25.0% |
| !!! | TTTTTAAGAGGACTACAAAT+TGG | - | chr4_1:2444946-2444965 | Msa0529110:intron | 25.0% |
| ! | CTTAATAATTAGACCTTGTA+AGG | + | chr4_1:2445060-2445079 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTAAATATGGTAT+TGG | - | chr4_1:2445187-2445206 | Msa0529110:intron | 25.0% |
| !!! | TCCCTGCAAATTTTTTTTAT+AGG | - | chr4_1:2445241-2445260 | Msa0529110:intron | 25.0% |
| !! | CCAAAAACAAAAATTTTGCA+GGG | + | chr4_1:2445306-2445325 | None:intergenic | 25.0% |
| !! | TCCAAAAACAAAAATTTTGC+AGG | + | chr4_1:2445307-2445326 | None:intergenic | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | - | chr4_1:2445841-2445860 | Msa0529110:intron | 25.0% |
| !!! | CATATTTTTTCCCTTATTCT+CGG | + | chr4_1:2445855-2445874 | None:intergenic | 25.0% |
| !! | CGAAATTTCGAAATTTTCAT+TGG | - | chr4_1:2445914-2445933 | Msa0529110:intron | 25.0% |
| ! | TATAAATACACAAAAGTTCC+CGG | + | chr4_1:2445973-2445992 | None:intergenic | 25.0% |
| !!! | TCCCTGCAAATTTTTTTTAT+AGG | + | chr4_1:2445241-2445260 | None:intergenic | 25.0% |
| ! | AAAAGGCTTAAATATGGTAT+TGG | + | chr4_1:2446862-2446881 | None:intergenic | 25.0% |
| ! | AACTTCATACCTAATTAAGT+TGG | - | chr4_1:2447014-2447033 | Msa0529110:intron | 25.0% |
| !!! | TTATTTTTGTTGCAGTACAA+GGG | + | chr4_1:2447065-2447084 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGCAGTACA+AGG | + | chr4_1:2447066-2447085 | None:intergenic | 25.0% |
| ! | ACTCCTATTTGTATGTAATA+TGG | - | chr4_1:2447632-2447651 | Msa0529110:intron | 25.0% |
| ! | ATGTAATATGGATATGGATA+TGG | - | chr4_1:2447644-2447663 | Msa0529110:intron | 25.0% |
| CAATATGTAGAAAGAAAGAG+AGG | + | chr4_1:2444286-2444305 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr4_1:2444857-2444876 | Msa0529110:intron | 30.0% |
| ! | ACCATACTTTATTTGAGATG+TGG | - | chr4_1:2444917-2444936 | Msa0529110:intron | 30.0% |
| ACCACATCTCAAATAAAGTA+TGG | + | chr4_1:2444921-2444940 | None:intergenic | 30.0% | |
| !!! | ATGTGGTGAACTTTTTTAAG+AGG | - | chr4_1:2444934-2444953 | Msa0529110:intron | 30.0% |
| TATTTAGAAACTAAGTGCTC+CGG | + | chr4_1:2445029-2445048 | None:intergenic | 30.0% | |
| AAATAACAATCCTCCTTACA+AGG | - | chr4_1:2445044-2445063 | Msa0529110:intron | 30.0% | |
| AATAATTAGACCTTGTAAGG+AGG | + | chr4_1:2445057-2445076 | None:intergenic | 30.0% | |
| ! | AACTTAAACAACTTTTTGCG+TGG | - | chr4_1:2445125-2445144 | Msa0529110:intron | 30.0% |
| !!! | CCCTGCAAAATTTTTGTTTT+TGG | - | chr4_1:2445303-2445322 | Msa0529110:intron | 30.0% |
| TTATTACATAATTGGGGTCA+GGG | + | chr4_1:2445336-2445355 | None:intergenic | 30.0% | |
| TTTATTACATAATTGGGGTC+AGG | + | chr4_1:2445337-2445356 | None:intergenic | 30.0% | |
| TGTATTTATAAACCGAGCTT+AGG | - | chr4_1:2445875-2445894 | Msa0529110:intron | 30.0% | |
| ATACACAAAAAACCTAAGCT+CGG | + | chr4_1:2445890-2445909 | None:intergenic | 30.0% | |
| ! | ATTTTCCCTGAATTTTTGCA+GGG | - | chr4_1:2446651-2446670 | Msa0529110:intron | 30.0% |
| !!! | AAAATTGGCCTATTTTTGCA+GGG | - | chr4_1:2446714-2446733 | Msa0529110:intron | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr4_1:2446775-2446794 | Msa0529110:intron | 30.0% |
| CATAAACAGAAACTCAAGAT+AGG | - | chr4_1:2446981-2447000 | Msa0529110:intron | 30.0% | |
| CAATTGTGTCCAACTTAATT+AGG | + | chr4_1:2447026-2447045 | None:intergenic | 30.0% | |
| !! | CTAATTAAGTTGGACACAAT+TGG | - | chr4_1:2447024-2447043 | Msa0529110:intron | 30.0% |
| ! | AACTTTCTTGTTTATGATCC+AGG | - | chr4_1:2447294-2447313 | Msa0529110:intron | 30.0% |
| ! | TGTACTGCTGATTGAAAATA+TGG | - | chr4_1:2447501-2447520 | Msa0529110:intron | 30.0% |
| AATATGGATATGGATATGGA+TGG | - | chr4_1:2447648-2447667 | Msa0529110:intron | 30.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr4_1:2444764-2444783 | Msa0529110:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr4_1:2444843-2444862 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr4_1:2444841-2444860 | Msa0529110:intron | 35.0% |
| ! | GCACTGTAGAGAATTGTTTT+TGG | - | chr4_1:2444879-2444898 | Msa0529110:intron | 35.0% |
| !!! | TGTAGAGAATTGTTTTTGGC+TGG | - | chr4_1:2444883-2444902 | Msa0529110:intron | 35.0% |
| !!! | GTAGAGAATTGTTTTTGGCT+GGG | - | chr4_1:2444884-2444903 | Msa0529110:intron | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+GGG | + | chr4_1:2445274-2445293 | None:intergenic | 35.0% |
| ! | CATTTTCCCTGAATTTTTGC+AGG | - | chr4_1:2446650-2446669 | Msa0529110:intron | 35.0% |
| TTGATCCCTGCAAAAATTCA+GGG | + | chr4_1:2446659-2446678 | None:intergenic | 35.0% | |
| TTTGATCCCTGCAAAAATTC+AGG | + | chr4_1:2446660-2446679 | None:intergenic | 35.0% | |
| ! | CTGCAAAAATAGGCCAATTT+TGG | + | chr4_1:2446715-2446734 | None:intergenic | 35.0% |
| !!! | CAAAATTGGCCTATTTTTGC+AGG | - | chr4_1:2446713-2446732 | Msa0529110:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_1:2446725-2446744 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr4_1:2446776-2446795 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr4_1:2446774-2446793 | Msa0529110:intron | 35.0% |
| GTTTCGTCTTCAGCTTAATT+AGG | + | chr4_1:2447151-2447170 | None:intergenic | 35.0% | |
| CTGAATCATAGCAAAACTGA+GGG | + | chr4_1:2447371-2447390 | None:intergenic | 35.0% | |
| ACTGAATCATAGCAAAACTG+AGG | + | chr4_1:2447372-2447391 | None:intergenic | 35.0% | |
| GGTGTTTATCACCTGTATAA+GGG | + | chr4_1:2447410-2447429 | None:intergenic | 35.0% | |
| AGGTGTTTATCACCTGTATA+AGG | + | chr4_1:2447411-2447430 | None:intergenic | 35.0% | |
| AATTGTTGCATTGCATCAAC+TGG | - | chr4_1:2447444-2447463 | Msa0529110:intron | 35.0% | |
| TGTGTACTTTATGAAGCAGA+TGG | - | chr4_1:2447468-2447487 | Msa0529110:intron | 35.0% | |
| ACAAACGAAGACAAGAAGGA+TGG | + | chr4_1:2444246-2444265 | None:intergenic | 40.0% | |
| ATCCTTCTTGTCTTCGTTTG+TGG | - | chr4_1:2444245-2444264 | Msa0529110:three_prime_UTR | 40.0% | |
| TACCACAAACGAAGACAAGA+AGG | + | chr4_1:2444250-2444269 | None:intergenic | 40.0% | |
| CTCGAGTTTATGTGTGTGTT+TGG | - | chr4_1:2444455-2444474 | Msa0529110:exon | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr4_1:2444780-2444799 | Msa0529110:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr4_1:2444794-2444813 | Msa0529110:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr4_1:2444797-2444816 | Msa0529110:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr4_1:2444848-2444867 | None:intergenic | 40.0% | |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | chr4_1:2446835-2446854 | None:intergenic | 40.0% |
| !! | GTTTTGGTCCCTGCAAAAAT+AGG | - | chr4_1:2445263-2445282 | Msa0529110:intron | 40.0% |
| !!! | CAAAACTGGCCTATTTTTGC+AGG | + | chr4_1:2445275-2445294 | None:intergenic | 40.0% |
| ! | CTGCAAAAATAGGCCAGTTT+TGG | - | chr4_1:2445273-2445292 | Msa0529110:intron | 40.0% |
| GCAGGGACTAAAACCAAAAT+TGG | - | chr4_1:2446699-2446718 | Msa0529110:intron | 40.0% | |
| !! | GTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_1:2445263-2445282 | None:intergenic | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | - | chr4_1:2446835-2446854 | Msa0529110:intron | 40.0% |
| ! | GATCCAGGTGCAATTCTTTT+AGG | - | chr4_1:2447309-2447328 | Msa0529110:intron | 40.0% |
| ! | TACATGACTTGCCCTTATAC+AGG | - | chr4_1:2447396-2447415 | Msa0529110:intron | 40.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr4_1:2445202-2445221 | Msa0529110:intron | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | chr4_1:2446834-2446853 | None:intergenic | 45.0% |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | chr4_1:2445212-2445231 | Msa0529110:intron | 45.0% |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr4_1:2446760-2446779 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr4_1:2446760-2446779 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | - | chr4_1:2446760-2446779 | Msa0529110:intron | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | + | chr4_1:2445212-2445231 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | - | chr4_1:2446834-2446853 | Msa0529110:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr4_1:2445202-2445221 | None:intergenic | 45.0% |
| CCTCCTAAAAGAATTGCACC+TGG | + | chr4_1:2447315-2447334 | None:intergenic | 45.0% | |
| ! | CCAGGTGCAATTCTTTTAGG+AGG | - | chr4_1:2447312-2447331 | Msa0529110:intron | 45.0% |
| AACAATTGCATGCTGGATCG+AGG | + | chr4_1:2447431-2447450 | None:intergenic | 45.0% | |
| GCAATGCAACAATTGCATGC+TGG | + | chr4_1:2447438-2447457 | None:intergenic | 45.0% | |
| !!! | TAAATATACTTATTTTTTTT+TGG | - | chr4_1:2445170-2445189 | Msa0529110:intron | 5.0% |
| !!! | AATTTTTTTATTACATAATT+GGG | + | chr4_1:2445343-2445362 | None:intergenic | 5.0% |
| !!! | TAATTTTTTTATTACATAAT+TGG | + | chr4_1:2445344-2445363 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr4_1:2445364-2445383 | Msa0529110:intron | 5.0% |
| !! | AAAAAATATTAAAAAAATTC+TGG | - | chr4_1:2445414-2445433 | Msa0529110:intron | 5.0% |
| !! | TAAAAAATATTAAAAAATTC+CGG | - | chr4_1:2445451-2445470 | Msa0529110:intron | 5.0% |
| !!! | AAAAAGTTATTAAAAAATTT+TGG | - | chr4_1:2445501-2445520 | Msa0529110:intron | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | chr4_1:2445364-2445383 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | chr4_1:2445364-2445383 | None:intergenic | 5.0% |
| !! | AAAAAAATATTTAAAAATTC+TGG | + | chr4_1:2446521-2446540 | None:intergenic | 5.0% |
| !! | ATAAAAAAATTAAAAAATTC+TGG | + | chr4_1:2446572-2446591 | None:intergenic | 5.0% |
| !! | AAAAAAAAATTAAAAAATTC+TGG | + | chr4_1:2446610-2446629 | None:intergenic | 5.0% |
| !!! | ACTTATTTTTTTTTAAAAAA+AGG | - | chr4_1:2446928-2446947 | Msa0529110:intron | 5.0% |
| !! | AACAAAAATAAATAATAAAT+TGG | - | chr4_1:2447074-2447093 | Msa0529110:intron | 5.0% |
| !!! | TTCTAAAAATAAAAATAAAT+TGG | - | chr4_1:2447251-2447270 | Msa0529110:intron | 5.0% |
| !! | TAATATTATTTACATAATTA+TGG | - | chr4_1:2447581-2447600 | Msa0529110:intron | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2444224 | 2447748 | 2444224 | ID=Msa0529110;Name=Msa0529110 |
| chr4_1 | mRNA | 2444224 | 2447748 | 2444224 | ID=Msa0529110-mRNA-1;Parent=Msa0529110;Name=Msa0529110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|233|80 |
| chr4_1 | exon | 2444224 | 2444656 | 2444224 | ID=Msa0529110-mRNA-1:exon:672;Parent=Msa0529110-mRNA-1 |
| chr4_1 | exon | 2447706 | 2447748 | 2447706 | ID=Msa0529110-mRNA-1:exon:671;Parent=Msa0529110-mRNA-1 |
| chr4_1 | CDS | 2447706 | 2447748 | 2447706 | ID=Msa0529110-mRNA-1:cds;Parent=Msa0529110-mRNA-1 |
| chr4_1 | CDS | 2444457 | 2444656 | 2444457 | ID=Msa0529110-mRNA-1:cds;Parent=Msa0529110-mRNA-1 |
| chr4_1 | three_prime_UTR | 2444224 | 2444456 | 2444224 | ID=Msa0529110-mRNA-1:three_prime_utr;Parent=Msa0529110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
