Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323010 | XP_003628207.1 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 3.20e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323010 | sp|Q9SSK5|MLP43_ARATH | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.08e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323010 | G7L8F9 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.53e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095940 | Msa1323010 | 0.807877 | 4.077531e-50 | -8.615850e-47 |
| Msa0657710 | Msa1323010 | 0.810156 | 1.326092e-50 | -8.615850e-47 |
| Msa0657720 | Msa1323010 | 0.807655 | 4.546042e-50 | -8.615850e-47 |
| Msa0702790 | Msa1323010 | 0.807301 | 5.404663e-50 | -8.615850e-47 |
| Msa0702800 | Msa1323010 | 0.804940 | 1.697124e-49 | -8.615850e-47 |
| Msa0709140 | Msa1323010 | 0.818938 | 1.509123e-52 | -8.615850e-47 |
| Msa0800180 | Msa1323010 | 0.803185 | 3.932081e-49 | -8.615850e-47 |
| Msa0810330 | Msa1323010 | 0.805823 | 1.108030e-49 | -8.615850e-47 |
| Msa0828950 | Msa1323010 | 0.810960 | 8.886223e-51 | -8.615850e-47 |
| Msa0828960 | Msa1323010 | 0.809602 | 1.744811e-50 | -8.615850e-47 |
| Msa0833270 | Msa1323010 | 0.809521 | 1.816399e-50 | -8.615850e-47 |
| Msa0139680 | Msa1323010 | 0.818954 | 1.496787e-52 | -8.615850e-47 |
| Msa0210610 | Msa1323010 | 0.813847 | 2.080807e-51 | -8.615850e-47 |
| Msa1238190 | Msa1323010 | 0.996453 | 1.003719e-227 | -8.615850e-47 |
| Msa1238600 | Msa1323010 | 0.818420 | 1.978752e-52 | -8.615850e-47 |
| Msa1255210 | Msa1323010 | 0.802204 | 6.268747e-49 | -8.615850e-47 |
| Msa1257610 | Msa1323010 | 0.802071 | 6.677263e-49 | -8.615850e-47 |
| Msa1284020 | Msa1323010 | 0.808422 | 3.121279e-50 | -8.615850e-47 |
| Msa1295650 | Msa1323010 | 0.801611 | 8.298687e-49 | -8.615850e-47 |
| Msa1307530 | Msa1323010 | 0.817748 | 2.806852e-52 | -8.615850e-47 |
| Msa1323010 | Msa1323070 | 0.837526 | 4.935280e-57 | -8.615850e-47 |
| Msa1323010 | Msa1404050 | 0.809737 | 1.632343e-50 | -8.615850e-47 |
| Msa1323010 | Msa1439250 | 0.842933 | 1.910408e-58 | -8.615850e-47 |
| Msa1323010 | Msa1439270 | 0.803298 | 3.727144e-49 | -8.615850e-47 |
| Msa1019420 | Msa1323010 | 0.828287 | 9.778973e-55 | -8.615850e-47 |
| Msa0286360 | Msa1323010 | 0.816822 | 4.534971e-52 | -8.615850e-47 |
| Msa0293720 | Msa1323010 | 0.815489 | 9.007187e-52 | -8.615850e-47 |
| Msa0298000 | Msa1323010 | 0.802740 | 4.861552e-49 | -8.615850e-47 |
| Msa1187480 | Msa1323010 | 0.814262 | 1.684739e-51 | -8.615850e-47 |
| Msa1202800 | Msa1323010 | 0.803664 | 3.129847e-49 | -8.615850e-47 |
| Msa1207390 | Msa1323010 | 0.806750 | 7.069410e-50 | -8.615850e-47 |
| Msa1207430 | Msa1323010 | 0.807257 | 5.521499e-50 | -8.615850e-47 |
| Msa0529110 | Msa1323010 | 0.810870 | 9.296518e-51 | -8.615850e-47 |
| Msa0595270 | Msa1323010 | 0.818842 | 1.587466e-52 | -8.615850e-47 |
| Msa0870510 | Msa1323010 | 0.807715 | 4.415604e-50 | -8.615850e-47 |
| Msa0905570 | Msa1323010 | 0.805480 | 1.308027e-49 | -8.615850e-47 |
| Msa0940910 | Msa1323010 | 0.849944 | 2.335566e-60 | -8.615850e-47 |
| Msa0946330 | Msa1323010 | 0.999175 | 3.446105e-294 | -8.615850e-47 |
| Msa0974710 | Msa1323010 | 0.807441 | 5.046829e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323010 | MtrunA17_Chr8g0355781 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.94e-110 | 309 |
| Msa1323010 | MtrunA17_Chr8g0355721 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 1.84e-86 | 249 |
| Msa1323010 | MtrunA17_Chr8g0355741 | 72.848 | 151 | 41 | 0 | 1 | 151 | 1 | 151 | 2.65e-82 | 239 |
| Msa1323010 | MtrunA17_Chr8g0355641 | 72.185 | 151 | 42 | 0 | 1 | 151 | 1 | 151 | 1.45e-81 | 237 |
| Msa1323010 | MtrunA17_Chr8g0355811 | 71.711 | 152 | 42 | 1 | 1 | 152 | 1 | 151 | 1.01e-80 | 235 |
| Msa1323010 | MtrunA17_Chr8g0355661 | 72.368 | 152 | 41 | 1 | 1 | 152 | 1 | 151 | 1.19e-80 | 235 |
| Msa1323010 | MtrunA17_Chr8g0355761 | 70.395 | 152 | 45 | 0 | 1 | 152 | 1 | 152 | 1.15e-79 | 232 |
| Msa1323010 | MtrunA17_Chr8g0355821 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 1.64e-76 | 224 |
| Msa1323010 | MtrunA17_Chr8g0355801 | 68.421 | 152 | 47 | 1 | 1 | 152 | 1 | 151 | 3.00e-76 | 224 |
| Msa1323010 | MtrunA17_Chr8g0355791 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 3.27e-74 | 218 |
| Msa1323010 | MtrunA17_Chr8g0355771 | 67.105 | 152 | 49 | 1 | 1 | 152 | 1 | 151 | 2.04e-73 | 216 |
| Msa1323010 | MtrunA17_Chr1g0160371 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.37e-42 | 138 |
| Msa1323010 | MtrunA17_Chr1g0160381 | 39.216 | 153 | 90 | 2 | 1 | 151 | 5 | 156 | 2.08e-39 | 130 |
| Msa1323010 | MtrunA17_Chr8g0339261 | 37.241 | 145 | 88 | 3 | 6 | 149 | 8 | 150 | 6.93e-32 | 111 |
| Msa1323010 | MtrunA17_Chr1g0160391 | 38.462 | 156 | 88 | 4 | 1 | 149 | 1 | 155 | 5.01e-29 | 104 |
| Msa1323010 | MtrunA17_Chr1g0160801 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 9.71e-26 | 95.5 |
| Msa1323010 | MtrunA17_Chr1g0160351 | 45.161 | 93 | 49 | 1 | 61 | 151 | 1 | 93 | 4.82e-23 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323010 | AT5G28010.1 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa1323010 | AT5G28010.2 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa1323010 | AT1G70890.1 | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.16e-28 | 102 |
| Msa1323010 | AT1G70840.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 20 | 168 | 3.09e-27 | 100 |
| Msa1323010 | AT1G70830.5 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.24e-25 | 96.3 |
| Msa1323010 | AT1G70830.3 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.60e-25 | 96.3 |
| Msa1323010 | AT1G70830.2 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 9.65e-25 | 95.9 |
| Msa1323010 | AT1G70850.2 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 1.15e-24 | 95.5 |
| Msa1323010 | AT1G23120.1 | 32.667 | 150 | 96 | 3 | 1 | 150 | 1 | 145 | 1.60e-24 | 92.8 |
| Msa1323010 | AT1G70830.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.83e-24 | 96.3 |
| Msa1323010 | AT1G70830.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 184 | 332 | 3.11e-23 | 93.6 |
| Msa1323010 | AT1G70850.3 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa1323010 | AT1G70850.3 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa1323010 | AT1G70850.1 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa1323010 | AT1G70850.1 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa1323010 | AT1G23120.2 | 33.333 | 144 | 91 | 3 | 7 | 150 | 57 | 195 | 8.98e-24 | 92.0 |
| Msa1323010 | AT1G70830.4 | 34.000 | 150 | 96 | 3 | 3 | 150 | 137 | 285 | 1.18e-23 | 94.0 |
| Msa1323010 | AT1G70830.4 | 33.333 | 93 | 61 | 1 | 59 | 150 | 31 | 123 | 3.28e-13 | 65.5 |
| Msa1323010 | AT1G70870.1 | 36.486 | 148 | 75 | 4 | 7 | 152 | 9 | 139 | 9.43e-22 | 85.5 |
| Msa1323010 | AT5G28000.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 13 | 161 | 2.15e-21 | 85.1 |
| Msa1323010 | AT4G23670.1 | 34.783 | 161 | 86 | 5 | 1 | 152 | 1 | 151 | 1.04e-20 | 83.2 |
| Msa1323010 | AT1G70880.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 4.18e-20 | 81.6 |
| Msa1323010 | AT1G23130.1 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 4.67e-20 | 81.6 |
| Msa1323010 | AT2G01520.1 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.71e-19 | 79.3 |
| Msa1323010 | AT1G14930.1 | 31.250 | 160 | 93 | 4 | 1 | 152 | 1 | 151 | 3.69e-19 | 79.0 |
| Msa1323010 | AT4G14060.1 | 32.026 | 153 | 101 | 3 | 1 | 152 | 1 | 151 | 3.14e-18 | 76.6 |
| Msa1323010 | AT2G01530.1 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.44e-17 | 73.9 |
| Msa1323010 | AT4G23680.1 | 30.435 | 161 | 93 | 5 | 1 | 152 | 1 | 151 | 5.50e-17 | 73.6 |
| Msa1323010 | AT1G14950.1 | 30.818 | 159 | 93 | 4 | 1 | 151 | 1 | 150 | 8.28e-17 | 73.2 |
| Msa1323010 | AT1G35260.1 | 25.828 | 151 | 108 | 3 | 2 | 150 | 1 | 149 | 1.38e-16 | 72.4 |
| Msa1323010 | AT1G35310.1 | 27.338 | 139 | 98 | 3 | 13 | 150 | 12 | 148 | 5.16e-16 | 70.9 |
| Msa1323010 | AT1G24020.1 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa1323010 | AT1G24020.2 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa1323010 | AT1G30990.1 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 2.03e-15 | 69.3 |
| Msa1323010 | AT1G14940.1 | 28.758 | 153 | 106 | 3 | 1 | 152 | 1 | 151 | 6.46e-15 | 68.2 |
| Msa1323010 | AT1G14960.1 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 4.99e-14 | 65.9 |
| Msa1323010 | AT3G26460.1 | 27.922 | 154 | 107 | 4 | 1 | 152 | 1 | 152 | 3.02e-12 | 60.8 |
| Msa1323010 | AT3G26450.1 | 27.329 | 161 | 99 | 5 | 1 | 152 | 1 | 152 | 1.11e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGCAAATCTCTATTTA+AGG | 0.136603 | 8_4:-30610228 | None:intergenic |
| TTTATACATCACATGATTTA+AGG | 0.146064 | 8_4:+30607533 | None:intergenic |
| CTTGATGCAGTTTAGTTTCA+TGG | 0.232611 | 8_4:+30610040 | None:intergenic |
| AATAAGCAGTTATGACTTAA+TGG | 0.241177 | 8_4:-30607689 | Msa1323010:three_prime_UTR |
| AAAATCACTTTCAAGCTCTT+TGG | 0.248666 | 8_4:-30607940 | Msa1323010:CDS |
| TCATGTGATGTATAAATAAA+TGG | 0.259742 | 8_4:-30607526 | Msa1323010:three_prime_UTR |
| CAAATCTCTATTTAAGGCTT+GGG | 0.268383 | 8_4:-30610222 | Msa1323010:five_prime_UTR |
| AAAATCAACCGAAGCTAATA+TGG | 0.272162 | 8_4:+30607600 | None:intergenic |
| GTGGAAGTGCTGCTGTTAAA+TGG | 0.283929 | 8_4:-30607855 | Msa1323010:CDS |
| ATCCATGTCTCTAGTGCTTT+TGG | 0.286969 | 8_4:+30607768 | None:intergenic |
| GGTAAAATTAGCACCGAAAT+AGG | 0.289299 | 8_4:-30610141 | Msa1323010:CDS |
| TGATCCTCCAAATGGCTATA+TGG | 0.321241 | 8_4:-30607800 | Msa1323010:CDS |
| GGATGCTTTAACACCTATTT+CGG | 0.330979 | 8_4:+30610128 | None:intergenic |
| ATTCTTTATGACTTATCAAT+TGG | 0.363337 | 8_4:+30607718 | None:intergenic |
| GCAAATCTCTATTTAAGGCT+TGG | 0.394267 | 8_4:-30610223 | Msa1323010:five_prime_UTR |
| CAGCCTTATCAATTACTTCA+AGG | 0.406054 | 8_4:+30607878 | None:intergenic |
| ATCACTTTCAAGCTCTTTGG+TGG | 0.431743 | 8_4:-30607937 | Msa1323010:CDS |
| TATAAATAAATGGATATTTG+TGG | 0.437077 | 8_4:-30607516 | Msa1323010:three_prime_UTR |
| TTGCATAGCCATATTAGCTT+CGG | 0.441864 | 8_4:-30607608 | Msa1323010:three_prime_UTR |
| AGACATTGATGAACACTATA+AGG | 0.467942 | 8_4:-30607914 | Msa1323010:CDS |
| CAAGGGATAATATGAGCAAC+TGG | 0.471351 | 8_4:+30610192 | None:intergenic |
| AATTAGTGTGATGTTTGTAA+TGG | 0.472531 | 8_4:-30607643 | Msa1323010:three_prime_UTR |
| TGAGAATAGTTTAAAGAACT+TGG | 0.479866 | 8_4:+30610101 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.481361 | 8_4:-30607881 | Msa1323010:CDS |
| AAACAGTGGACTTATGTCAT+AGG | 0.490184 | 8_4:-30609988 | Msa1323010:intron |
| AAGTAGTCCATATAGCCATT+TGG | 0.505544 | 8_4:+30607793 | None:intergenic |
| GAGGATATTGATCCTCCAAA+TGG | 0.518489 | 8_4:-30607808 | Msa1323010:CDS |
| AACTGCATCAAGGTGATGAC+TGG | 0.533533 | 8_4:-30610029 | Msa1323010:CDS |
| CAAGATCTTCAATAATCTCA+TGG | 0.543904 | 8_4:+30607977 | None:intergenic |
| CTTGAAGTAATTGATAAGGC+TGG | 0.549528 | 8_4:-30607877 | Msa1323010:CDS |
| AAATCTCTATTTAAGGCTTG+GGG | 0.555875 | 8_4:-30610221 | Msa1323010:five_prime_UTR |
| TAATTATAAAATAACGACTT+AGG | 0.558419 | 8_4:+30607661 | None:intergenic |
| TTTCATGGACTCTTTCACAA+AGG | 0.579358 | 8_4:+30610055 | None:intergenic |
| TAGTTTAAAGAACTTGGCAG+AGG | 0.580442 | 8_4:+30610107 | None:intergenic |
| CATGAAACTAAACTGCATCA+AGG | 0.587212 | 8_4:-30610039 | Msa1323010:CDS |
| TAGTCCATATAGCCATTTGG+AGG | 0.593989 | 8_4:+30607796 | None:intergenic |
| CATGGATGCTCATCTTGTCA+AGG | 0.600309 | 8_4:-30607752 | Msa1323010:CDS |
| GTGTGATGTTTGTAATGGCA+TGG | 0.608990 | 8_4:-30607638 | Msa1323010:three_prime_UTR |
| GAAGTAATTGATAAGGCTGG+TGG | 0.619376 | 8_4:-30607874 | Msa1323010:CDS |
| TGCCAAAAGCACTAGAGACA+TGG | 0.621841 | 8_4:-30607770 | Msa1323010:CDS |
| ACATCACAACACAGATGGCA+AGG | 0.623787 | 8_4:-30608010 | Msa1323010:intron |
| GCTCTGATTCACTTAAACAG+TGG | 0.634288 | 8_4:-30610002 | Msa1323010:CDS |
| TGAATATGAGAAAATCAATG+AGG | 0.668209 | 8_4:-30607827 | Msa1323010:CDS |
| CATCAAGGTGATGACTGGCA+TGG | 0.672723 | 8_4:-30610024 | Msa1323010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAACTCTTATTTTTTT+TGG | + | chr8_4:30608224-30608243 | None:intergenic | 10.0% |
| !!! | AAAAAAATAAGAGTTTTTTA+AGG | - | chr8_4:30608224-30608243 | Msa1323010:intron | 10.0% |
| !!! | TAAAAGTTTAAAGTTTTTAA+AGG | - | chr8_4:30608253-30608272 | Msa1323010:intron | 10.0% |
| !! | GAAAATAAATATTATTTGTA+TGG | + | chr8_4:30608496-30608515 | None:intergenic | 10.0% |
| !! | AAGAATCTAATTAATAAATT+TGG | + | chr8_4:30608757-30608776 | None:intergenic | 10.0% |
| !! | TAAAATAAAACAAGATGATT+TGG | + | chr8_4:30607793-30607812 | None:intergenic | 15.0% |
| !! | TTAAACTAATCTATCAAAAT+TGG | - | chr8_4:30607941-30607960 | Msa1323010:CDS | 15.0% |
| !!! | CTTTTTTTTTTTTTTTGTTG+AGG | + | chr8_4:30608065-30608084 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGATTTTTGTG+CGG | - | chr8_4:30608074-30608093 | Msa1323010:intron | 15.0% |
| !!! | TTATTTTAACGTGAAATATT+CGG | - | chr8_4:30608317-30608336 | Msa1323010:intron | 15.0% |
| !!! | TTATTTTTACGTGAAATAAT+CGG | - | chr8_4:30608465-30608484 | Msa1323010:intron | 15.0% |
| !!! | TATTGCTTTGTTTAATTAAA+CGG | + | chr8_4:30608549-30608568 | None:intergenic | 15.0% |
| !! | AATATATTGATACATTGTAA+TGG | - | chr8_4:30608565-30608584 | Msa1323010:intron | 15.0% |
| !!! | TATTTGTACAAATATCATTT+TGG | + | chr8_4:30608595-30608614 | None:intergenic | 15.0% |
| !! | AAAGAAAATAGATAAAAAGT+TGG | - | chr8_4:30608721-30608740 | Msa1323010:intron | 15.0% |
| !!! | AATTATGTTTTTATCTTTGA+AGG | - | chr8_4:30608880-30608899 | Msa1323010:intron | 15.0% |
| !! | ATAAAAAACAATAGATAGAA+AGG | + | chr8_4:30609047-30609066 | None:intergenic | 15.0% |
| !! | TTACTAACAACAATTAATAA+GGG | + | chr8_4:30609224-30609243 | None:intergenic | 15.0% |
| !! | TTTACTAACAACAATTAATA+AGG | + | chr8_4:30609225-30609244 | None:intergenic | 15.0% |
| !! | TTTATTTATCATGATATTGA+TGG | - | chr8_4:30609393-30609412 | Msa1323010:intron | 15.0% |
| !! | TAATTATAAAATAACGACTT+AGG | + | chr8_4:30610065-30610084 | None:intergenic | 15.0% |
| !! | TATAAATAAATGGATATTTG+TGG | - | chr8_4:30610207-30610226 | Msa1323010:five_prime_UTR | 15.0% |
| !!! | CTAATCTTTTTGTTTTGAAT+AGG | - | chr8_4:30607918-30607937 | Msa1323010:CDS | 20.0% |
| !!! | TATTTTAACGTGAAATATTC+GGG | - | chr8_4:30608318-30608337 | Msa1323010:intron | 20.0% |
| !! | ATATTAAAGGTTGTATGATT+AGG | - | chr8_4:30608416-30608435 | Msa1323010:intron | 20.0% |
| !! | TATTAAAGGTTGTATGATTA+GGG | - | chr8_4:30608417-30608436 | Msa1323010:intron | 20.0% |
| !!! | TATTTTTACGTGAAATAATC+GGG | - | chr8_4:30608466-30608485 | Msa1323010:intron | 20.0% |
| !!! | ATTGCTTTGTTTAATTAAAC+GGG | + | chr8_4:30608548-30608567 | None:intergenic | 20.0% |
| !!! | ATTAATAAATTTGGAATTGC+AGG | + | chr8_4:30608748-30608767 | None:intergenic | 20.0% |
| !! | AAAGGAAAAAAAAAAGTGAA+AGG | + | chr8_4:30609029-30609048 | None:intergenic | 20.0% |
| !! | TGTTAGTAAAGTAGTTAAAT+TGG | - | chr8_4:30609235-30609254 | Msa1323010:intron | 20.0% |
| !!! | ATCTTACCATTTGTTAAATT+CGG | - | chr8_4:30609609-30609628 | Msa1323010:intron | 20.0% |
| !! | GTCATATATGTATATATACA+GGG | - | chr8_4:30609631-30609650 | Msa1323010:intron | 20.0% |
| !! | ATTCTTTATGACTTATCAAT+TGG | + | chr8_4:30610008-30610027 | None:intergenic | 20.0% |
| !! | TTTATACATCACATGATTTA+AGG | + | chr8_4:30610193-30610212 | None:intergenic | 20.0% |
| !! | TCATGTGATGTATAAATAAA+TGG | - | chr8_4:30610197-30610216 | Msa1323010:five_prime_UTR | 20.0% |
| ! | TGAGAATAGTTTAAAGAACT+TGG | + | chr8_4:30607625-30607644 | None:intergenic | 25.0% |
| ! | TGGTTAAAAATCTGAAGAAA+TGG | - | chr8_4:30608039-30608058 | Msa1323010:intron | 25.0% |
| ! | TTCAGCAGAAATAAACTTTA+TGG | + | chr8_4:30608136-30608155 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGTTGTACGATT+AGG | - | chr8_4:30608266-30608285 | Msa1323010:intron | 25.0% |
| !!! | TTTTAAAGGTTGTACGATTA+GGG | - | chr8_4:30608267-30608286 | Msa1323010:intron | 25.0% |
| !!! | ATTTTAACGTGAAATATTCG+GGG | - | chr8_4:30608319-30608338 | Msa1323010:intron | 25.0% |
| !! | ATTTTTACGTGAAATAATCG+GGG | - | chr8_4:30608467-30608486 | Msa1323010:intron | 25.0% |
| ! | TACATGTTAAAGTACAAATG+AGG | - | chr8_4:30608812-30608831 | Msa1323010:intron | 25.0% |
| !!! | TCTTTTTAGTTTACGACTAT+TGG | - | chr8_4:30608849-30608868 | Msa1323010:intron | 25.0% |
| !! | GAGTTTAAGAGCATAAAAAA+TGG | + | chr8_4:30608991-30609010 | None:intergenic | 25.0% |
| !!! | AGGTTTGTGCATTATTTTTA+AGG | - | chr8_4:30609144-30609163 | Msa1323010:intron | 25.0% |
| ! | AGTAAAGTAGTTAAATTGGA+TGG | - | chr8_4:30609239-30609258 | Msa1323010:intron | 25.0% |
| ! | ACACATGTAAAACAAGTTTA+AGG | - | chr8_4:30609522-30609541 | Msa1323010:intron | 25.0% |
| ! | AGTATACTGAATTGAATTCA+CGG | + | chr8_4:30609554-30609573 | None:intergenic | 25.0% |
| ! | ATATGACCGAATTTAACAAA+TGG | + | chr8_4:30609618-30609637 | None:intergenic | 25.0% |
| ! | GGTCATATATGTATATATAC+AGG | - | chr8_4:30609630-30609649 | Msa1323010:intron | 25.0% |
| ! | TGAATATGAGAAAATCAATG+AGG | - | chr8_4:30609896-30609915 | Msa1323010:intron | 25.0% |
| ! | AATAAGCAGTTATGACTTAA+TGG | - | chr8_4:30610034-30610053 | Msa1323010:CDS | 25.0% |
| ! | AATTAGTGTGATGTTTGTAA+TGG | - | chr8_4:30610080-30610099 | Msa1323010:CDS | 25.0% |
| ! | CAAATCTCTATTTAAGGCTT+GGG | - | chr8_4:30607501-30607520 | Msa1323010:three_prime_UTR | 30.0% |
| ! | AAATCTCTATTTAAGGCTTG+GGG | - | chr8_4:30607502-30607521 | Msa1323010:three_prime_UTR | 30.0% |
| !! | TTTCACAAAGGTTTTGTACA+TGG | + | chr8_4:30607659-30607678 | None:intergenic | 30.0% |
| AGTTGAGTTCTGTATGATTT+CGG | - | chr8_4:30607888-30607907 | Msa1323010:CDS | 30.0% | |
| AATAGATTCCTATGAGTTGT+CGG | - | chr8_4:30608645-30608664 | Msa1323010:intron | 30.0% | |
| TTCAAGTAACTACGAAAATG+AGG | - | chr8_4:30609095-30609114 | Msa1323010:intron | 30.0% | |
| TATTGCGTTAGTTAGTGTTT+GGG | + | chr8_4:30609437-30609456 | None:intergenic | 30.0% | |
| TTATTGCGTTAGTTAGTGTT+TGG | + | chr8_4:30609438-30609457 | None:intergenic | 30.0% | |
| CAAGATCTTCAATAATCTCA+TGG | + | chr8_4:30609749-30609768 | None:intergenic | 30.0% | |
| AAAATCACTTTCAAGCTCTT+TGG | - | chr8_4:30609783-30609802 | Msa1323010:intron | 30.0% | |
| AGACATTGATGAACACTATA+AGG | - | chr8_4:30609809-30609828 | Msa1323010:intron | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | - | chr8_4:30609842-30609861 | Msa1323010:intron | 30.0% | |
| AAAATCAACCGAAGCTAATA+TGG | + | chr8_4:30610126-30610145 | None:intergenic | 30.0% | |
| ! | GCAAATCTCTATTTAAGGCT+TGG | - | chr8_4:30607500-30607519 | Msa1323010:three_prime_UTR | 35.0% |
| !! | TTTTTGGGAGAAACAAGCAA+GGG | + | chr8_4:30607551-30607570 | None:intergenic | 35.0% |
| !! | ATTTTTGGGAGAAACAAGCA+AGG | + | chr8_4:30607552-30607571 | None:intergenic | 35.0% |
| ! | TTGCTTGTTTCTCCCAAAAA+TGG | - | chr8_4:30607551-30607570 | Msa1323010:three_prime_UTR | 35.0% |
| ! | GGTAAAATTAGCACCGAAAT+AGG | - | chr8_4:30607582-30607601 | Msa1323010:three_prime_UTR | 35.0% |
| GGATGCTTTAACACCTATTT+CGG | + | chr8_4:30607598-30607617 | None:intergenic | 35.0% | |
| TAGTTTAAAGAACTTGGCAG+AGG | + | chr8_4:30607619-30607638 | None:intergenic | 35.0% | |
| TTTCATGGACTCTTTCACAA+AGG | + | chr8_4:30607671-30607690 | None:intergenic | 35.0% | |
| ! | CTTGATGCAGTTTAGTTTCA+TGG | + | chr8_4:30607686-30607705 | None:intergenic | 35.0% |
| CATGAAACTAAACTGCATCA+AGG | - | chr8_4:30607684-30607703 | Msa1323010:three_prime_UTR | 35.0% | |
| ! | AAACAGTGGACTTATGTCAT+AGG | - | chr8_4:30607735-30607754 | Msa1323010:exon | 35.0% |
| CATACAGAACTCAACTAACA+AGG | + | chr8_4:30607884-30607903 | None:intergenic | 35.0% | |
| CTAAGATCACAAACACAACT+AGG | - | chr8_4:30608006-30608025 | Msa1323010:intron | 35.0% | |
| GCATACGAAATAGTCGTTTA+AGG | - | chr8_4:30609124-30609143 | Msa1323010:intron | 35.0% | |
| ! | TTGACTTTTATGCGTTAGTG+TGG | - | chr8_4:30609470-30609489 | Msa1323010:intron | 35.0% |
| ! | TGACTTTTATGCGTTAGTGT+GGG | - | chr8_4:30609471-30609490 | Msa1323010:intron | 35.0% |
| ! | CAGCCTTATCAATTACTTCA+AGG | + | chr8_4:30609848-30609867 | None:intergenic | 35.0% |
| CTTGAAGTAATTGATAAGGC+TGG | - | chr8_4:30609846-30609865 | Msa1323010:intron | 35.0% | |
| AAGTAGTCCATATAGCCATT+TGG | + | chr8_4:30609933-30609952 | None:intergenic | 35.0% | |
| ! | TTGCATAGCCATATTAGCTT+CGG | - | chr8_4:30610115-30610134 | Msa1323010:CDS | 35.0% |
| !! | CGGTTGATTTTTCGTTTGTA+TGG | - | chr8_4:30610135-30610154 | Msa1323010:CDS | 35.0% |
| CAAGGGATAATATGAGCAAC+TGG | + | chr8_4:30607534-30607553 | None:intergenic | 40.0% | |
| GCTCTGATTCACTTAAACAG+TGG | - | chr8_4:30607721-30607740 | Msa1323010:three_prime_UTR | 40.0% | |
| CACAACTAGGTCAACTTAGT+TGG | - | chr8_4:30608019-30608038 | Msa1323010:intron | 40.0% | |
| CTTAGTTACCGACAACTCAT+AGG | + | chr8_4:30608656-30608675 | None:intergenic | 40.0% | |
| CTATGAGTTGTCGGTAACTA+AGG | - | chr8_4:30608654-30608673 | Msa1323010:intron | 40.0% | |
| ! | GACTTTTATGCGTTAGTGTG+GGG | - | chr8_4:30609472-30609491 | Msa1323010:intron | 40.0% |
| CATCTGTGTTGTGATGTCAT+GGG | + | chr8_4:30609710-30609729 | None:intergenic | 40.0% | |
| ATCACTTTCAAGCTCTTTGG+TGG | - | chr8_4:30609786-30609805 | Msa1323010:intron | 40.0% | |
| GAAGTAATTGATAAGGCTGG+TGG | - | chr8_4:30609849-30609868 | Msa1323010:intron | 40.0% | |
| GAGGATATTGATCCTCCAAA+TGG | - | chr8_4:30609915-30609934 | Msa1323010:intron | 40.0% | |
| TGATCCTCCAAATGGCTATA+TGG | - | chr8_4:30609923-30609942 | Msa1323010:intron | 40.0% | |
| TAGTCCATATAGCCATTTGG+AGG | + | chr8_4:30609930-30609949 | None:intergenic | 40.0% | |
| ! | ATCCATGTCTCTAGTGCTTT+TGG | + | chr8_4:30609958-30609977 | None:intergenic | 40.0% |
| GTGTGATGTTTGTAATGGCA+TGG | - | chr8_4:30610085-30610104 | Msa1323010:CDS | 40.0% | |
| !! | TACCAGCGAGCACCATTTTT+GGG | + | chr8_4:30607566-30607585 | None:intergenic | 45.0% |
| ! | TTACCAGCGAGCACCATTTT+TGG | + | chr8_4:30607567-30607586 | None:intergenic | 45.0% |
| AACTGCATCAAGGTGATGAC+TGG | - | chr8_4:30607694-30607713 | Msa1323010:three_prime_UTR | 45.0% | |
| ! | TTTTATGCGTTAGTGTGGGG+TGG | - | chr8_4:30609475-30609494 | Msa1323010:intron | 45.0% |
| TTTATGCGTTAGTGTGGGGT+GGG | - | chr8_4:30609476-30609495 | Msa1323010:intron | 45.0% | |
| CCATCTGTGTTGTGATGTCA+TGG | + | chr8_4:30609711-30609730 | None:intergenic | 45.0% | |
| CCATGACATCACAACACAGA+TGG | - | chr8_4:30609708-30609727 | Msa1323010:intron | 45.0% | |
| ACATCACAACACAGATGGCA+AGG | - | chr8_4:30609713-30609732 | Msa1323010:intron | 45.0% | |
| !! | GTGGAAGTGCTGCTGTTAAA+TGG | - | chr8_4:30609868-30609887 | Msa1323010:intron | 45.0% |
| !! | TGCCAAAAGCACTAGAGACA+TGG | - | chr8_4:30609953-30609972 | Msa1323010:intron | 45.0% |
| CATGGATGCTCATCTTGTCA+AGG | - | chr8_4:30609971-30609990 | Msa1323010:intron | 45.0% | |
| !! | TATATATGTATATATATTAA+AGG | - | chr8_4:30608403-30608422 | Msa1323010:intron | 5.0% |
| !!! | AAAAAAAAAAGTTTTTAAAT+GGG | + | chr8_4:30608959-30608978 | None:intergenic | 5.0% |
| !!! | TAAAAAAAAAAGTTTTTAAA+TGG | + | chr8_4:30608960-30608979 | None:intergenic | 5.0% |
| CATCAAGGTGATGACTGGCA+TGG | - | chr8_4:30607699-30607718 | Msa1323010:three_prime_UTR | 50.0% | |
| TTATGCGTTAGTGTGGGGTG+GGG | - | chr8_4:30609477-30609496 | Msa1323010:intron | 50.0% | |
| CTCCCAAAAATGGTGCTCGC+TGG | - | chr8_4:30607561-30607580 | Msa1323010:three_prime_UTR | 55.0% | |
| TATGCGTTAGTGTGGGGTGG+GGG | - | chr8_4:30609478-30609497 | Msa1323010:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 30607500 | 30610245 | 30607500 | ID=Msa1323010;Name=Msa1323010 |
| chr8_4 | mRNA | 30607500 | 30610245 | 30607500 | ID=Msa1323010-mRNA-1;Parent=Msa1323010;Name=Msa1323010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=70|1|1|1|1|1|2|247|152 |
| chr8_4 | exon | 30607500 | 30608018 | 30607500 | ID=Msa1323010-mRNA-1:exon:10153;Parent=Msa1323010-mRNA-1 |
| chr8_4 | exon | 30609989 | 30610245 | 30609989 | ID=Msa1323010-mRNA-1:exon:10152;Parent=Msa1323010-mRNA-1 |
| chr8_4 | five_prime_UTR | 30610176 | 30610245 | 30610176 | ID=Msa1323010-mRNA-1:five_prime_utr;Parent=Msa1323010-mRNA-1 |
| chr8_4 | CDS | 30609989 | 30610175 | 30609989 | ID=Msa1323010-mRNA-1:cds;Parent=Msa1323010-mRNA-1 |
| chr8_4 | CDS | 30607747 | 30608018 | 30607747 | ID=Msa1323010-mRNA-1:cds;Parent=Msa1323010-mRNA-1 |
| chr8_4 | three_prime_UTR | 30607500 | 30607746 | 30607500 | ID=Msa1323010-mRNA-1:three_prime_utr;Parent=Msa1323010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
