Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595270 | XP_013455238.1 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 1.78e-43 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595270 | I3S093 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 8.50e-44 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025560 | Msa0595270 | 0.802284 | 6.035292e-49 | -8.615850e-47 |
| Msa0052780 | Msa0595270 | 0.803419 | 3.518534e-49 | -8.615850e-47 |
| Msa0077570 | Msa0595270 | -0.808232 | 3.426896e-50 | -8.615850e-47 |
| Msa0095940 | Msa0595270 | 0.822639 | 2.127717e-53 | -8.615850e-47 |
| Msa0097570 | Msa0595270 | 0.806019 | 1.007904e-49 | -8.615850e-47 |
| Msa0101530 | Msa0595270 | 0.814230 | 1.712538e-51 | -8.615850e-47 |
| Msa0121300 | Msa0595270 | 0.803569 | 3.274932e-49 | -8.615850e-47 |
| Msa0135030 | Msa0595270 | 0.812605 | 3.897806e-51 | -8.615850e-47 |
| Msa0166190 | Msa0595270 | 0.802876 | 4.555693e-49 | -8.615850e-47 |
| Msa0192870 | Msa0595270 | 0.807565 | 4.751578e-50 | -8.615850e-47 |
| Msa0193950 | Msa0595270 | 0.810164 | 1.320800e-50 | -8.615850e-47 |
| Msa0235000 | Msa0595270 | 0.823613 | 1.260540e-53 | -8.615850e-47 |
| Msa0375790 | Msa0595270 | 0.815620 | 8.421918e-52 | -8.615850e-47 |
| Msa0405460 | Msa0595270 | -0.809571 | 1.771316e-50 | -8.615850e-47 |
| Msa0405470 | Msa0595270 | -0.814083 | 1.845096e-51 | -8.615850e-47 |
| Msa0405550 | Msa0595270 | -0.802526 | 5.379668e-49 | -8.615850e-47 |
| Msa0480900 | Msa0595270 | -0.808563 | 2.913218e-50 | -8.615850e-47 |
| Msa0269170 | Msa0595270 | -0.810084 | 1.374481e-50 | -8.615850e-47 |
| Msa0270830 | Msa0595270 | -0.808190 | 3.497772e-50 | -8.615850e-47 |
| Msa0273400 | Msa0595270 | 0.849631 | 2.856795e-60 | -8.615850e-47 |
| Msa0286360 | Msa0595270 | 0.815339 | 9.727210e-52 | -8.615850e-47 |
| Msa0287480 | Msa0595270 | 0.803042 | 4.210942e-49 | -8.615850e-47 |
| Msa0313660 | Msa0595270 | 0.827857 | 1.240793e-54 | -8.615850e-47 |
| Msa0345050 | Msa0595270 | 0.810010 | 1.425394e-50 | -8.615850e-47 |
| Msa0483970 | Msa0595270 | -0.812574 | 3.958235e-51 | -8.615850e-47 |
| Msa0524670 | Msa0595270 | 0.806706 | 7.219940e-50 | -8.615850e-47 |
| Msa0529110 | Msa0595270 | 0.995350 | 2.100050e-215 | -8.615850e-47 |
| Msa0531050 | Msa0595270 | 0.818322 | 2.082667e-52 | -8.615850e-47 |
| Msa0534610 | Msa0595270 | 0.802675 | 5.012364e-49 | -8.615850e-47 |
| Msa0535400 | Msa0595270 | 0.810087 | 1.371897e-50 | -8.615850e-47 |
| Msa0547370 | Msa0595270 | 0.805932 | 1.051215e-49 | -8.615850e-47 |
| Msa0566280 | Msa0595270 | 0.800568 | 1.355743e-48 | -8.615850e-47 |
| Msa0588040 | Msa0595270 | 0.806558 | 7.761845e-50 | -8.615850e-47 |
| Msa0590620 | Msa0595270 | -0.832211 | 1.075595e-55 | -8.615850e-47 |
| Msa0590810 | Msa0595270 | 0.806644 | 7.440953e-50 | -8.615850e-47 |
| Msa0591250 | Msa0595270 | -0.802430 | 5.630671e-49 | -8.615850e-47 |
| Msa0595270 | Msa0603310 | 0.818670 | 1.736584e-52 | -8.615850e-47 |
| Msa0595270 | Msa0626920 | 0.802238 | 6.167155e-49 | -8.615850e-47 |
| Msa0595270 | Msa0637590 | 0.801601 | 8.338695e-49 | -8.615850e-47 |
| Msa0595270 | Msa0682910 | 0.818893 | 1.545575e-52 | -8.615850e-47 |
| Msa0595270 | Msa0742370 | -0.811355 | 7.297898e-51 | -8.615850e-47 |
| Msa0595270 | Msa0743370 | 0.817942 | 2.538599e-52 | -8.615850e-47 |
| Msa0595270 | Msa0744640 | 0.838554 | 2.684713e-57 | -8.615850e-47 |
| Msa0595270 | Msa0779450 | -0.800753 | 1.243033e-48 | -8.615850e-47 |
| Msa0595270 | Msa0795860 | 0.808018 | 3.805585e-50 | -8.615850e-47 |
| Msa0595270 | Msa0800150 | 0.820143 | 8.013592e-53 | -8.615850e-47 |
| Msa0595270 | Msa0800180 | 0.802730 | 4.883203e-49 | -8.615850e-47 |
| Msa0595270 | Msa0810330 | 0.809094 | 2.242815e-50 | -8.615850e-47 |
| Msa0595270 | Msa0829990 | 0.806572 | 7.706004e-50 | -8.615850e-47 |
| Msa0595270 | Msa0833270 | 0.819208 | 1.310377e-52 | -8.615850e-47 |
| Msa0595270 | Msa0841730 | 0.838416 | 2.913705e-57 | -8.615850e-47 |
| Msa0595270 | Msa0850640 | 0.809691 | 1.669231e-50 | -8.615850e-47 |
| Msa0595270 | Msa0862480 | -0.808596 | 2.865617e-50 | -8.615850e-47 |
| Msa0595270 | Msa0867660 | -0.805129 | 1.549335e-49 | -8.615850e-47 |
| Msa0595270 | Msa0870510 | 0.800669 | 1.293184e-48 | -8.615850e-47 |
| Msa0595270 | Msa0873910 | 0.808047 | 3.751429e-50 | -8.615850e-47 |
| Msa0595270 | Msa0901270 | 0.812375 | 4.376662e-51 | -8.615850e-47 |
| Msa0595270 | Msa0905570 | 0.828903 | 6.938973e-55 | -8.615850e-47 |
| Msa0595270 | Msa0906660 | 0.801678 | 8.037671e-49 | -8.615850e-47 |
| Msa0595270 | Msa0908260 | -0.808564 | 2.910503e-50 | -8.615850e-47 |
| Msa0595270 | Msa0908270 | -0.803647 | 3.155481e-49 | -8.615850e-47 |
| Msa0595270 | Msa0908350 | -0.800582 | 1.346790e-48 | -8.615850e-47 |
| Msa0595270 | Msa0908470 | -0.803397 | 3.555015e-49 | -8.615850e-47 |
| Msa0595270 | Msa0908510 | -0.801939 | 7.106054e-49 | -8.615850e-47 |
| Msa0595270 | Msa0908630 | -0.807747 | 4.345956e-50 | -8.615850e-47 |
| Msa0595270 | Msa0908690 | -0.813702 | 2.238938e-51 | -8.615850e-47 |
| Msa0595270 | Msa0908700 | -0.802286 | 6.029021e-49 | -8.615850e-47 |
| Msa0595270 | Msa0909260 | 0.812952 | 3.271376e-51 | -8.615850e-47 |
| Msa0595270 | Msa0924840 | -0.807014 | 6.215069e-50 | -8.615850e-47 |
| Msa0595270 | Msa0924900 | -0.807307 | 5.388456e-50 | -8.615850e-47 |
| Msa0595270 | Msa0940910 | 0.842963 | 1.875398e-58 | -8.615850e-47 |
| Msa0595270 | Msa0946330 | 0.818196 | 2.223174e-52 | -8.615850e-47 |
| Msa0595270 | Msa0966580 | 0.802204 | 6.269262e-49 | -8.615850e-47 |
| Msa0595270 | Msa0966590 | 0.807017 | 6.206296e-50 | -8.615850e-47 |
| Msa0595270 | Msa0983600 | -0.809410 | 1.918853e-50 | -8.615850e-47 |
| Msa0595270 | Msa0983610 | -0.808824 | 2.561217e-50 | -8.615850e-47 |
| Msa0595270 | Msa1001120 | 0.811175 | 7.982502e-51 | -8.615850e-47 |
| Msa0595270 | Msa1019420 | 0.838009 | 3.709283e-57 | -8.615850e-47 |
| Msa0595270 | Msa1074550 | 0.802684 | 4.991423e-49 | -8.615850e-47 |
| Msa0595270 | Msa1075090 | 0.801264 | 9.775900e-49 | -8.615850e-47 |
| Msa0595270 | Msa1086760 | -0.805832 | 1.103379e-49 | -8.615850e-47 |
| Msa0595270 | Msa1086770 | -0.804305 | 2.302796e-49 | -8.615850e-47 |
| Msa0595270 | Msa1086940 | -0.806651 | 7.417911e-50 | -8.615850e-47 |
| Msa0595270 | Msa1087070 | -0.818561 | 1.838019e-52 | -8.615850e-47 |
| Msa0595270 | Msa1087080 | -0.807545 | 4.796384e-50 | -8.615850e-47 |
| Msa0595270 | Msa1087090 | -0.805833 | 1.103042e-49 | -8.615850e-47 |
| Msa0595270 | Msa1089990 | 0.932185 | 1.244393e-94 | -8.615850e-47 |
| Msa0595270 | Msa1107220 | 0.818286 | 2.121925e-52 | -8.615850e-47 |
| Msa0595270 | Msa1107250 | 0.805697 | 1.177612e-49 | -8.615850e-47 |
| Msa0595270 | Msa1167310 | 0.801584 | 8.403219e-49 | -8.615850e-47 |
| Msa0595270 | Msa1173150 | 0.800474 | 1.417148e-48 | -8.615850e-47 |
| Msa0595270 | Msa1202110 | 0.809946 | 1.471603e-50 | -8.615850e-47 |
| Msa0595270 | Msa1202800 | 0.829116 | 6.162440e-55 | -8.615850e-47 |
| Msa0595270 | Msa1221270 | 0.809041 | 2.301480e-50 | -8.615850e-47 |
| Msa0595270 | Msa1223710 | 0.814135 | 1.796965e-51 | -8.615850e-47 |
| Msa0595270 | Msa1238190 | 0.811674 | 6.222478e-51 | -8.615850e-47 |
| Msa0595270 | Msa1254870 | 0.808521 | 2.972772e-50 | -8.615850e-47 |
| Msa0595270 | Msa1255210 | 0.822716 | 2.041199e-53 | -8.615850e-47 |
| Msa0595270 | Msa1268390 | 0.807314 | 5.370808e-50 | -8.615850e-47 |
| Msa0595270 | Msa1268420 | 0.800315 | 1.526422e-48 | -8.615850e-47 |
| Msa0595270 | Msa1269200 | 0.812544 | 4.019819e-51 | -8.615850e-47 |
| Msa0595270 | Msa1284020 | 0.808589 | 2.875614e-50 | -8.615850e-47 |
| Msa0595270 | Msa1295650 | 0.820227 | 7.666581e-53 | -8.615850e-47 |
| Msa0595270 | Msa1322960 | 0.810877 | 9.264125e-51 | -8.615850e-47 |
| Msa0595270 | Msa1323010 | 0.818842 | 1.587466e-52 | -8.615850e-47 |
| Msa0595270 | Msa1328430 | 0.807833 | 4.167188e-50 | -8.615850e-47 |
| Msa0595270 | Msa1331570 | -0.819565 | 1.086729e-52 | -8.615850e-47 |
| Msa0595270 | Msa1354360 | -0.804006 | 2.656752e-49 | -8.615850e-47 |
| Msa0595270 | Msa1354370 | -0.800361 | 1.494112e-48 | -8.615850e-47 |
| Msa0595270 | Msa1354400 | -0.803410 | 3.533635e-49 | -8.615850e-47 |
| Msa0595270 | Msa1354520 | -0.809467 | 1.865650e-50 | -8.615850e-47 |
| Msa0595270 | Msa1354530 | -0.803703 | 3.071775e-49 | -8.615850e-47 |
| Msa0595270 | Msa1354650 | -0.807284 | 5.450316e-50 | -8.615850e-47 |
| Msa0595270 | Msa1354660 | -0.806598 | 7.609545e-50 | -8.615850e-47 |
| Msa0595270 | Msa1354780 | -0.808647 | 2.794348e-50 | -8.615850e-47 |
| Msa0595270 | Msa1354790 | -0.805559 | 1.259121e-49 | -8.615850e-47 |
| Msa0595270 | Msa1354960 | -0.805211 | 1.489616e-49 | -8.615850e-47 |
| Msa0595270 | Msa1355030 | -0.800029 | 1.745496e-48 | -8.615850e-47 |
| Msa0595270 | Msa1365990 | -0.804518 | 2.078370e-49 | -8.615850e-47 |
| Msa0595270 | Msa1366020 | -0.807528 | 4.838055e-50 | -8.615850e-47 |
| Msa0595270 | Msa1366030 | -0.807700 | 4.446569e-50 | -8.615850e-47 |
| Msa0595270 | Msa1366060 | -0.806503 | 7.970806e-50 | -8.615850e-47 |
| Msa0595270 | Msa1368260 | -0.810018 | 1.420042e-50 | -8.615850e-47 |
| Msa0595270 | Msa1384700 | 0.806761 | 7.029351e-50 | -8.615850e-47 |
| Msa0595270 | Msa1385360 | -0.804460 | 2.137871e-49 | -8.615850e-47 |
| Msa0595270 | Msa1385390 | -0.805936 | 1.049378e-49 | -8.615850e-47 |
| Msa0595270 | Msa1387450 | -0.801651 | 8.141059e-49 | -8.615850e-47 |
| Msa0595270 | Msa1391130 | -0.811321 | 7.423484e-51 | -8.615850e-47 |
| Msa0595270 | Msa1391140 | -0.810551 | 1.089796e-50 | -8.615850e-47 |
| Msa0595270 | Msa1391260 | -0.812567 | 3.972119e-51 | -8.615850e-47 |
| Msa0595270 | Msa1404050 | 0.827953 | 1.176973e-54 | -8.615850e-47 |
| Msa0595270 | Msa1405530 | 0.807913 | 4.007164e-50 | -8.615850e-47 |
| Msa0595270 | Msa1445530 | 0.815845 | 7.502948e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595270 | MtrunA17_Chr4g0014461 | 87.500 | 80 | 10 | 0 | 1 | 80 | 1 | 80 | 1.64e-47 | 145 |
| Msa0595270 | MtrunA17_Chr4g0014431 | 81.013 | 79 | 15 | 0 | 1 | 79 | 1 | 79 | 5.32e-42 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTAATTATGTTGTAATA+TGG | 0.214329 | 4_2:-24234608 | Msa0595270:three_prime_UTR |
| TAATATTATTTACATAATTA+TGG | 0.219522 | 4_2:-24234635 | Msa0595270:three_prime_UTR |
| TGTACTGCTGATTGAAAATA+TGG | 0.233285 | 4_2:-24234715 | Msa0595270:exon |
| ACTCCTATTTGTATGTAATA+TGG | 0.281587 | 4_2:-24234584 | Msa0595270:three_prime_UTR |
| AGGTGTTTATCACCTGTATA+AGG | 0.302748 | 4_2:+24234808 | None:intergenic |
| ATTTGTATGTAATATGGATA+TGG | 0.337532 | 4_2:-24234578 | Msa0595270:three_prime_UTR |
| ATCCTTCTTGTCTTCGTTTG+TGG | 0.338806 | 4_2:-24236275 | Msa0595270:intron |
| TATCCATATTACATACAAAT+AGG | 0.368185 | 4_2:+24234581 | None:intergenic |
| ATGTAATATGGATATGGATA+TGG | 0.371160 | 4_2:-24234572 | Msa0595270:three_prime_UTR |
| AGCAAAATGGCTTTAAAGGT+TGG | 0.418570 | 4_2:-24236302 | None:intergenic |
| AATTGTTGCATTGCATCAAC+TGG | 0.473599 | 4_2:-24234772 | Msa0595270:CDS |
| TACATGACTTGCCCTTATAC+AGG | 0.473979 | 4_2:-24234820 | Msa0595270:CDS |
| GGTGTTTATCACCTGTATAA+GGG | 0.520757 | 4_2:+24234809 | None:intergenic |
| TACCACAAACGAAGACAAGA+AGG | 0.582604 | 4_2:+24236273 | None:intergenic |
| GCAATGCAACAATTGCATGC+TGG | 0.616125 | 4_2:+24234781 | None:intergenic |
| TGTGTACTTTATGAAGCAGA+TGG | 0.632102 | 4_2:-24234748 | Msa0595270:CDS |
| AATATGGATATGGATATGGA+TGG | 0.636950 | 4_2:-24234568 | Msa0595270:three_prime_UTR |
| CTGAATCATAGCAAAACTGA+GGG | 0.651830 | 4_2:+24234848 | None:intergenic |
| ACAAACGAAGACAAGAAGGA+TGG | 0.658438 | 4_2:+24236277 | None:intergenic |
| ACTGAATCATAGCAAAACTG+AGG | 0.661702 | 4_2:+24234847 | None:intergenic |
| AACAATTGCATGCTGGATCG+AGG | 0.699789 | 4_2:+24234788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTGTTGAATTGTAT+AGG | + | chr4_2:24235743-24235762 | None:intergenic | 15.0% |
| !! | GAATTAATTATGTTGTAATA+TGG | - | chr4_2:24236178-24236197 | Msa0595270:intron | 15.0% |
| !!! | ATTTTTTTGTTGAATTGTAT+AGG | + | chr4_2:24235743-24235762 | None:intergenic | 15.0% |
| !! | GAATTAATTATGTTGTAATA+TGG | - | chr4_2:24236178-24236197 | Msa0595270:intron | 15.0% |
| !!! | TTGTTTCTTTTAGCAATTTA+TGG | - | chr4_2:24234575-24234594 | Msa0595270:three_prime_UTR | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr4_2:24234857-24234876 | Msa0595270:CDS | 20.0% |
| !! | TAAACAAACTTTAACTAAAC+CGG | - | chr4_2:24235273-24235292 | Msa0595270:intron | 20.0% |
| !! | TATCCATATTACATACAAAT+AGG | + | chr4_2:24236208-24236227 | None:intergenic | 20.0% |
| !! | ATTTGTATGTAATATGGATA+TGG | - | chr4_2:24236208-24236227 | Msa0595270:intron | 20.0% |
| !!! | TTGTTTCTTTTAGCAATTTA+TGG | - | chr4_2:24234575-24234594 | Msa0595270:three_prime_UTR | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr4_2:24234857-24234876 | Msa0595270:CDS | 20.0% |
| !! | TAAACAAACTTTAACTAAAC+CGG | - | chr4_2:24235273-24235292 | Msa0595270:intron | 20.0% |
| !! | TATCCATATTACATACAAAT+AGG | + | chr4_2:24236208-24236227 | None:intergenic | 20.0% |
| !! | ATTTGTATGTAATATGGATA+TGG | - | chr4_2:24236208-24236227 | Msa0595270:intron | 20.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr4_2:24234813-24234832 | Msa0595270:CDS | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr4_2:24234916-24234935 | Msa0595270:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr4_2:24234933-24234952 | Msa0595270:intron | 25.0% |
| ! | TAAAGAAGGTGAATTGATAA+AGG | - | chr4_2:24234947-24234966 | Msa0595270:intron | 25.0% |
| ! | AAAGAAGGTGAATTGATAAA+GGG | - | chr4_2:24234948-24234967 | Msa0595270:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | - | chr4_2:24234968-24234987 | Msa0595270:intron | 25.0% |
| !!! | TTTTTAAGAGGACTACAAAT+TGG | - | chr4_2:24235212-24235231 | Msa0595270:intron | 25.0% |
| ! | CTTAATAATTAGACCTTGTA+AGG | + | chr4_2:24235326-24235345 | None:intergenic | 25.0% |
| ! | AACTTCATACCTAATTAAGT+TGG | - | chr4_2:24235583-24235602 | Msa0595270:intron | 25.0% |
| !!! | TTATTTTTGTTGCAGTACAA+GGG | + | chr4_2:24235634-24235653 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGCAGTACA+AGG | + | chr4_2:24235635-24235654 | None:intergenic | 25.0% |
| ! | ACTCCTATTTGTATGTAATA+TGG | - | chr4_2:24236202-24236221 | Msa0595270:intron | 25.0% |
| ! | ATGTAATATGGATATGGATA+TGG | - | chr4_2:24236214-24236233 | Msa0595270:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr4_2:24234813-24234832 | Msa0595270:CDS | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr4_2:24234916-24234935 | Msa0595270:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr4_2:24234933-24234952 | Msa0595270:intron | 25.0% |
| ! | TAAAGAAGGTGAATTGATAA+AGG | - | chr4_2:24234947-24234966 | Msa0595270:intron | 25.0% |
| ! | AAAGAAGGTGAATTGATAAA+GGG | - | chr4_2:24234948-24234967 | Msa0595270:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | - | chr4_2:24234968-24234987 | Msa0595270:intron | 25.0% |
| !!! | TTTTTAAGAGGACTACAAAT+TGG | - | chr4_2:24235212-24235231 | Msa0595270:intron | 25.0% |
| ! | CTTAATAATTAGACCTTGTA+AGG | + | chr4_2:24235326-24235345 | None:intergenic | 25.0% |
| ! | AACTTCATACCTAATTAAGT+TGG | - | chr4_2:24235583-24235602 | Msa0595270:intron | 25.0% |
| !!! | TTATTTTTGTTGCAGTACAA+GGG | + | chr4_2:24235634-24235653 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGTTGCAGTACA+AGG | + | chr4_2:24235635-24235654 | None:intergenic | 25.0% |
| ! | ACTCCTATTTGTATGTAATA+TGG | - | chr4_2:24236202-24236221 | Msa0595270:intron | 25.0% |
| ! | ATGTAATATGGATATGGATA+TGG | - | chr4_2:24236214-24236233 | Msa0595270:intron | 25.0% |
| CAATATGTAGAAAGAAAGAG+AGG | + | chr4_2:24234552-24234571 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr4_2:24235123-24235142 | Msa0595270:intron | 30.0% |
| ! | ACCATACTTTATTTGAGATG+TGG | - | chr4_2:24235183-24235202 | Msa0595270:intron | 30.0% |
| ACCACATCTCAAATAAAGTA+TGG | + | chr4_2:24235187-24235206 | None:intergenic | 30.0% | |
| !!! | ATGTGGTGAACTTTTTTAAG+AGG | - | chr4_2:24235200-24235219 | Msa0595270:intron | 30.0% |
| TATTTAGAAACTAAGTGCTC+CGG | + | chr4_2:24235295-24235314 | None:intergenic | 30.0% | |
| AAATAACAATCCTCCTTACA+AGG | - | chr4_2:24235310-24235329 | Msa0595270:intron | 30.0% | |
| AATAATTAGACCTTGTAAGG+AGG | + | chr4_2:24235323-24235342 | None:intergenic | 30.0% | |
| ! | AACTTAAACAACTTTTTGCG+TGG | - | chr4_2:24235390-24235409 | Msa0595270:intron | 30.0% |
| CATAAACAGAAACTCAAGAT+AGG | - | chr4_2:24235550-24235569 | Msa0595270:intron | 30.0% | |
| CAATTGTGTCCAACTTAATT+AGG | + | chr4_2:24235595-24235614 | None:intergenic | 30.0% | |
| !! | CTAATTAAGTTGGACACAAT+TGG | - | chr4_2:24235593-24235612 | Msa0595270:intron | 30.0% |
| ! | AACTTTCTTGTTTATGATCC+AGG | - | chr4_2:24235864-24235883 | Msa0595270:intron | 30.0% |
| ! | TGTACTGCTGATTGAAAATA+TGG | - | chr4_2:24236071-24236090 | Msa0595270:intron | 30.0% |
| AATATGGATATGGATATGGA+TGG | - | chr4_2:24236218-24236237 | Msa0595270:intron | 30.0% | |
| CAATATGTAGAAAGAAAGAG+AGG | + | chr4_2:24234552-24234571 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr4_2:24235123-24235142 | Msa0595270:intron | 30.0% |
| ! | ACCATACTTTATTTGAGATG+TGG | - | chr4_2:24235183-24235202 | Msa0595270:intron | 30.0% |
| ACCACATCTCAAATAAAGTA+TGG | + | chr4_2:24235187-24235206 | None:intergenic | 30.0% | |
| !!! | ATGTGGTGAACTTTTTTAAG+AGG | - | chr4_2:24235200-24235219 | Msa0595270:intron | 30.0% |
| TATTTAGAAACTAAGTGCTC+CGG | + | chr4_2:24235295-24235314 | None:intergenic | 30.0% | |
| AAATAACAATCCTCCTTACA+AGG | - | chr4_2:24235310-24235329 | Msa0595270:intron | 30.0% | |
| AATAATTAGACCTTGTAAGG+AGG | + | chr4_2:24235323-24235342 | None:intergenic | 30.0% | |
| ! | AACTTAAACAACTTTTTGCG+TGG | - | chr4_2:24235390-24235409 | Msa0595270:intron | 30.0% |
| CATAAACAGAAACTCAAGAT+AGG | - | chr4_2:24235550-24235569 | Msa0595270:intron | 30.0% | |
| CAATTGTGTCCAACTTAATT+AGG | + | chr4_2:24235595-24235614 | None:intergenic | 30.0% | |
| !! | CTAATTAAGTTGGACACAAT+TGG | - | chr4_2:24235593-24235612 | Msa0595270:intron | 30.0% |
| ! | AACTTTCTTGTTTATGATCC+AGG | - | chr4_2:24235864-24235883 | Msa0595270:intron | 30.0% |
| ! | TGTACTGCTGATTGAAAATA+TGG | - | chr4_2:24236071-24236090 | Msa0595270:intron | 30.0% |
| AATATGGATATGGATATGGA+TGG | - | chr4_2:24236218-24236237 | Msa0595270:intron | 30.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr4_2:24235030-24235049 | Msa0595270:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr4_2:24235109-24235128 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr4_2:24235107-24235126 | Msa0595270:intron | 35.0% |
| ! | GCACTGTAGAGAATTGTTTT+TGG | - | chr4_2:24235145-24235164 | Msa0595270:intron | 35.0% |
| !!! | TGTAGAGAATTGTTTTTGGC+TGG | - | chr4_2:24235149-24235168 | Msa0595270:intron | 35.0% |
| !!! | GTAGAGAATTGTTTTTGGCT+GGG | - | chr4_2:24235150-24235169 | Msa0595270:intron | 35.0% |
| GTTTCGTCTTCAGCTTAATT+AGG | + | chr4_2:24235721-24235740 | None:intergenic | 35.0% | |
| CTGAATCATAGCAAAACTGA+GGG | + | chr4_2:24235941-24235960 | None:intergenic | 35.0% | |
| ACTGAATCATAGCAAAACTG+AGG | + | chr4_2:24235942-24235961 | None:intergenic | 35.0% | |
| GGTGTTTATCACCTGTATAA+GGG | + | chr4_2:24235980-24235999 | None:intergenic | 35.0% | |
| AGGTGTTTATCACCTGTATA+AGG | + | chr4_2:24235981-24236000 | None:intergenic | 35.0% | |
| AATTGTTGCATTGCATCAAC+TGG | - | chr4_2:24236014-24236033 | Msa0595270:intron | 35.0% | |
| TGTGTACTTTATGAAGCAGA+TGG | - | chr4_2:24236038-24236057 | Msa0595270:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr4_2:24235030-24235049 | Msa0595270:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr4_2:24235109-24235128 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr4_2:24235107-24235126 | Msa0595270:intron | 35.0% |
| ! | GCACTGTAGAGAATTGTTTT+TGG | - | chr4_2:24235145-24235164 | Msa0595270:intron | 35.0% |
| !!! | TGTAGAGAATTGTTTTTGGC+TGG | - | chr4_2:24235149-24235168 | Msa0595270:intron | 35.0% |
| !!! | GTAGAGAATTGTTTTTGGCT+GGG | - | chr4_2:24235150-24235169 | Msa0595270:intron | 35.0% |
| GTTTCGTCTTCAGCTTAATT+AGG | + | chr4_2:24235721-24235740 | None:intergenic | 35.0% | |
| CTGAATCATAGCAAAACTGA+GGG | + | chr4_2:24235941-24235960 | None:intergenic | 35.0% | |
| ACTGAATCATAGCAAAACTG+AGG | + | chr4_2:24235942-24235961 | None:intergenic | 35.0% | |
| GGTGTTTATCACCTGTATAA+GGG | + | chr4_2:24235980-24235999 | None:intergenic | 35.0% | |
| AGGTGTTTATCACCTGTATA+AGG | + | chr4_2:24235981-24236000 | None:intergenic | 35.0% | |
| AATTGTTGCATTGCATCAAC+TGG | - | chr4_2:24236014-24236033 | Msa0595270:intron | 35.0% | |
| TGTGTACTTTATGAAGCAGA+TGG | - | chr4_2:24236038-24236057 | Msa0595270:intron | 35.0% | |
| ACAAACGAAGACAAGAAGGA+TGG | + | chr4_2:24234512-24234531 | None:intergenic | 40.0% | |
| ATCCTTCTTGTCTTCGTTTG+TGG | - | chr4_2:24234511-24234530 | Msa0595270:three_prime_UTR | 40.0% | |
| TACCACAAACGAAGACAAGA+AGG | + | chr4_2:24234516-24234535 | None:intergenic | 40.0% | |
| CTCGAGTTTATGTGTGTGTT+TGG | - | chr4_2:24234721-24234740 | Msa0595270:exon | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr4_2:24235046-24235065 | Msa0595270:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr4_2:24235060-24235079 | Msa0595270:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr4_2:24235063-24235082 | Msa0595270:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr4_2:24235114-24235133 | None:intergenic | 40.0% | |
| ! | GATCCAGGTGCAATTCTTTT+AGG | - | chr4_2:24235879-24235898 | Msa0595270:intron | 40.0% |
| ! | TACATGACTTGCCCTTATAC+AGG | - | chr4_2:24235966-24235985 | Msa0595270:intron | 40.0% |
| ACAAACGAAGACAAGAAGGA+TGG | + | chr4_2:24234512-24234531 | None:intergenic | 40.0% | |
| ATCCTTCTTGTCTTCGTTTG+TGG | - | chr4_2:24234511-24234530 | Msa0595270:three_prime_UTR | 40.0% | |
| TACCACAAACGAAGACAAGA+AGG | + | chr4_2:24234516-24234535 | None:intergenic | 40.0% | |
| CTCGAGTTTATGTGTGTGTT+TGG | - | chr4_2:24234721-24234740 | Msa0595270:exon | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr4_2:24235046-24235065 | Msa0595270:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr4_2:24235060-24235079 | Msa0595270:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr4_2:24235063-24235082 | Msa0595270:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr4_2:24235114-24235133 | None:intergenic | 40.0% | |
| ! | GATCCAGGTGCAATTCTTTT+AGG | - | chr4_2:24235879-24235898 | Msa0595270:intron | 40.0% |
| ! | TACATGACTTGCCCTTATAC+AGG | - | chr4_2:24235966-24235985 | Msa0595270:intron | 40.0% |
| CCTCCTAAAAGAATTGCACC+TGG | + | chr4_2:24235885-24235904 | None:intergenic | 45.0% | |
| ! | CCAGGTGCAATTCTTTTAGG+AGG | - | chr4_2:24235882-24235901 | Msa0595270:intron | 45.0% |
| AACAATTGCATGCTGGATCG+AGG | + | chr4_2:24236001-24236020 | None:intergenic | 45.0% | |
| GCAATGCAACAATTGCATGC+TGG | + | chr4_2:24236008-24236027 | None:intergenic | 45.0% | |
| CCTCCTAAAAGAATTGCACC+TGG | + | chr4_2:24235885-24235904 | None:intergenic | 45.0% | |
| ! | CCAGGTGCAATTCTTTTAGG+AGG | - | chr4_2:24235882-24235901 | Msa0595270:intron | 45.0% |
| AACAATTGCATGCTGGATCG+AGG | + | chr4_2:24236001-24236020 | None:intergenic | 45.0% | |
| GCAATGCAACAATTGCATGC+TGG | + | chr4_2:24236008-24236027 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTTTTTGAAAAAA+AGG | - | chr4_2:24235445-24235464 | Msa0595270:intron | 5.0% |
| !!! | ACTTATTTTTTTTTAAAAAA+AGG | - | chr4_2:24235497-24235516 | Msa0595270:intron | 5.0% |
| !! | AACAAAAATAAATAATAAAT+TGG | - | chr4_2:24235643-24235662 | Msa0595270:intron | 5.0% |
| !!! | TTCTAAAAATAAAAATAAAT+TGG | - | chr4_2:24235821-24235840 | Msa0595270:intron | 5.0% |
| !! | TAATATTATTTACATAATTA+TGG | - | chr4_2:24236151-24236170 | Msa0595270:intron | 5.0% |
| !!! | TATTTTTTTTTTTGAAAAAA+AGG | - | chr4_2:24235445-24235464 | Msa0595270:intron | 5.0% |
| !!! | ACTTATTTTTTTTTAAAAAA+AGG | - | chr4_2:24235497-24235516 | Msa0595270:intron | 5.0% |
| !! | AACAAAAATAAATAATAAAT+TGG | - | chr4_2:24235643-24235662 | Msa0595270:intron | 5.0% |
| !!! | TTCTAAAAATAAAAATAAAT+TGG | - | chr4_2:24235821-24235840 | Msa0595270:intron | 5.0% |
| !! | TAATATTATTTACATAATTA+TGG | - | chr4_2:24236151-24236170 | Msa0595270:intron | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 24234490 | 24236318 | 24234490 | ID=Msa0595270;Name=Msa0595270 |
| chr4_2 | mRNA | 24234490 | 24236318 | 24234490 | ID=Msa0595270-mRNA-1;Parent=Msa0595270;Name=Msa0595270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|233|80 |
| chr4_2 | exon | 24234490 | 24234922 | 24234490 | ID=Msa0595270-mRNA-1:exon:6552;Parent=Msa0595270-mRNA-1 |
| chr4_2 | exon | 24236276 | 24236318 | 24236276 | ID=Msa0595270-mRNA-1:exon:6551;Parent=Msa0595270-mRNA-1 |
| chr4_2 | CDS | 24236276 | 24236318 | 24236276 | ID=Msa0595270-mRNA-1:cds;Parent=Msa0595270-mRNA-1 |
| chr4_2 | CDS | 24234723 | 24234922 | 24234723 | ID=Msa0595270-mRNA-1:cds;Parent=Msa0595270-mRNA-1 |
| chr4_2 | three_prime_UTR | 24234490 | 24234722 | 24234490 | ID=Msa0595270-mRNA-1:three_prime_utr;Parent=Msa0595270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
