Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946330 | sp|Q9SSK5|MLP43_ARATH | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.08e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946330 | G7L8F9 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.53e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095940 | Msa0946330 | 0.807135 | 5.861082e-50 | -8.615850e-47 |
| Msa0657710 | Msa0946330 | 0.812237 | 4.690824e-51 | -8.615850e-47 |
| Msa0657720 | Msa0946330 | 0.807782 | 4.272180e-50 | -8.615850e-47 |
| Msa0702790 | Msa0946330 | 0.808012 | 3.816372e-50 | -8.615850e-47 |
| Msa0702800 | Msa0946330 | 0.807212 | 5.643839e-50 | -8.615850e-47 |
| Msa0709140 | Msa0946330 | 0.819490 | 1.130024e-52 | -8.615850e-47 |
| Msa0800180 | Msa0946330 | 0.805463 | 1.318733e-49 | -8.615850e-47 |
| Msa0810330 | Msa0946330 | 0.807329 | 5.330089e-50 | -8.615850e-47 |
| Msa0828950 | Msa0946330 | 0.811431 | 7.024759e-51 | -8.615850e-47 |
| Msa0828960 | Msa0946330 | 0.811925 | 5.486452e-51 | -8.615850e-47 |
| Msa0833270 | Msa0946330 | 0.808983 | 2.368499e-50 | -8.615850e-47 |
| Msa0139680 | Msa0946330 | 0.819353 | 1.214364e-52 | -8.615850e-47 |
| Msa0210610 | Msa0946330 | 0.813226 | 2.849935e-51 | -8.615850e-47 |
| Msa0286360 | Msa0946330 | 0.818396 | 2.003801e-52 | -8.615850e-47 |
| Msa0293720 | Msa0946330 | 0.817615 | 3.008959e-52 | -8.615850e-47 |
| Msa0298000 | Msa0946330 | 0.805979 | 1.027701e-49 | -8.615850e-47 |
| Msa0529110 | Msa0946330 | 0.811434 | 7.014158e-51 | -8.615850e-47 |
| Msa0595270 | Msa0946330 | 0.818196 | 2.223174e-52 | -8.615850e-47 |
| Msa0870510 | Msa0946330 | 0.804974 | 1.669612e-49 | -8.615850e-47 |
| Msa0905570 | Msa0946330 | 0.805385 | 1.369786e-49 | -8.615850e-47 |
| Msa0940910 | Msa0946330 | 0.849720 | 2.697432e-60 | -8.615850e-47 |
| Msa0946330 | Msa0974710 | 0.806784 | 6.952289e-50 | -8.615850e-47 |
| Msa0946330 | Msa1019420 | 0.827635 | 1.403158e-54 | -8.615850e-47 |
| Msa0946330 | Msa1187480 | 0.816662 | 4.925595e-52 | -8.615850e-47 |
| Msa0946330 | Msa1202800 | 0.803553 | 3.299503e-49 | -8.615850e-47 |
| Msa0946330 | Msa1207390 | 0.806687 | 7.288994e-50 | -8.615850e-47 |
| Msa0946330 | Msa1207430 | 0.806296 | 8.814007e-50 | -8.615850e-47 |
| Msa0946330 | Msa1238190 | 0.996540 | 7.442881e-229 | -8.615850e-47 |
| Msa0946330 | Msa1238600 | 0.815528 | 8.826516e-52 | -8.615850e-47 |
| Msa0946330 | Msa1255210 | 0.801504 | 8.729873e-49 | -8.615850e-47 |
| Msa0946330 | Msa1257610 | 0.801838 | 7.453090e-49 | -8.615850e-47 |
| Msa0946330 | Msa1284020 | 0.812478 | 4.155355e-51 | -8.615850e-47 |
| Msa0946330 | Msa1295650 | 0.800931 | 1.143273e-48 | -8.615850e-47 |
| Msa0946330 | Msa1307530 | 0.818202 | 2.217375e-52 | -8.615850e-47 |
| Msa0946330 | Msa1323010 | 0.999175 | 3.446105e-294 | -8.615850e-47 |
| Msa0946330 | Msa1323070 | 0.840693 | 7.455116e-58 | -8.615850e-47 |
| Msa0946330 | Msa1404050 | 0.809924 | 1.487542e-50 | -8.615850e-47 |
| Msa0946330 | Msa1439250 | 0.845842 | 3.155060e-59 | -8.615850e-47 |
| Msa0946330 | Msa1439270 | 0.803029 | 4.236481e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946330 | MtrunA17_Chr8g0355781 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.94e-110 | 309 |
| Msa0946330 | MtrunA17_Chr8g0355721 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 1.84e-86 | 249 |
| Msa0946330 | MtrunA17_Chr8g0355741 | 72.848 | 151 | 41 | 0 | 1 | 151 | 1 | 151 | 2.65e-82 | 239 |
| Msa0946330 | MtrunA17_Chr8g0355641 | 72.185 | 151 | 42 | 0 | 1 | 151 | 1 | 151 | 1.45e-81 | 237 |
| Msa0946330 | MtrunA17_Chr8g0355811 | 71.711 | 152 | 42 | 1 | 1 | 152 | 1 | 151 | 1.01e-80 | 235 |
| Msa0946330 | MtrunA17_Chr8g0355661 | 72.368 | 152 | 41 | 1 | 1 | 152 | 1 | 151 | 1.19e-80 | 235 |
| Msa0946330 | MtrunA17_Chr8g0355761 | 70.395 | 152 | 45 | 0 | 1 | 152 | 1 | 152 | 1.15e-79 | 232 |
| Msa0946330 | MtrunA17_Chr8g0355821 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 1.64e-76 | 224 |
| Msa0946330 | MtrunA17_Chr8g0355801 | 68.421 | 152 | 47 | 1 | 1 | 152 | 1 | 151 | 3.00e-76 | 224 |
| Msa0946330 | MtrunA17_Chr8g0355791 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 3.27e-74 | 218 |
| Msa0946330 | MtrunA17_Chr8g0355771 | 67.105 | 152 | 49 | 1 | 1 | 152 | 1 | 151 | 2.04e-73 | 216 |
| Msa0946330 | MtrunA17_Chr1g0160371 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.37e-42 | 138 |
| Msa0946330 | MtrunA17_Chr1g0160381 | 39.216 | 153 | 90 | 2 | 1 | 151 | 5 | 156 | 2.08e-39 | 130 |
| Msa0946330 | MtrunA17_Chr8g0339261 | 37.241 | 145 | 88 | 3 | 6 | 149 | 8 | 150 | 6.93e-32 | 111 |
| Msa0946330 | MtrunA17_Chr1g0160391 | 38.462 | 156 | 88 | 4 | 1 | 149 | 1 | 155 | 5.01e-29 | 104 |
| Msa0946330 | MtrunA17_Chr1g0160801 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 9.71e-26 | 95.5 |
| Msa0946330 | MtrunA17_Chr1g0160351 | 45.161 | 93 | 49 | 1 | 61 | 151 | 1 | 93 | 4.82e-23 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946330 | AT5G28010.1 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa0946330 | AT5G28010.2 | 36.000 | 150 | 93 | 3 | 3 | 150 | 15 | 163 | 5.91e-29 | 104 |
| Msa0946330 | AT1G70890.1 | 36.667 | 150 | 92 | 3 | 3 | 150 | 7 | 155 | 5.16e-28 | 102 |
| Msa0946330 | AT1G70840.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 20 | 168 | 3.09e-27 | 100 |
| Msa0946330 | AT1G70830.5 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.24e-25 | 96.3 |
| Msa0946330 | AT1G70830.3 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.60e-25 | 96.3 |
| Msa0946330 | AT1G70830.2 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 9.65e-25 | 95.9 |
| Msa0946330 | AT1G70850.2 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 1.15e-24 | 95.5 |
| Msa0946330 | AT1G23120.1 | 32.667 | 150 | 96 | 3 | 1 | 150 | 1 | 145 | 1.60e-24 | 92.8 |
| Msa0946330 | AT1G70830.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.83e-24 | 96.3 |
| Msa0946330 | AT1G70830.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 184 | 332 | 3.11e-23 | 93.6 |
| Msa0946330 | AT1G70850.3 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa0946330 | AT1G70850.3 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa0946330 | AT1G70850.1 | 33.333 | 150 | 97 | 3 | 3 | 150 | 9 | 157 | 3.56e-24 | 95.5 |
| Msa0946330 | AT1G70850.1 | 35.714 | 140 | 87 | 3 | 13 | 150 | 175 | 313 | 5.82e-23 | 92.4 |
| Msa0946330 | AT1G23120.2 | 33.333 | 144 | 91 | 3 | 7 | 150 | 57 | 195 | 8.98e-24 | 92.0 |
| Msa0946330 | AT1G70830.4 | 34.000 | 150 | 96 | 3 | 3 | 150 | 137 | 285 | 1.18e-23 | 94.0 |
| Msa0946330 | AT1G70830.4 | 33.333 | 93 | 61 | 1 | 59 | 150 | 31 | 123 | 3.28e-13 | 65.5 |
| Msa0946330 | AT1G70870.1 | 36.486 | 148 | 75 | 4 | 7 | 152 | 9 | 139 | 9.43e-22 | 85.5 |
| Msa0946330 | AT5G28000.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 13 | 161 | 2.15e-21 | 85.1 |
| Msa0946330 | AT4G23670.1 | 34.783 | 161 | 86 | 5 | 1 | 152 | 1 | 151 | 1.04e-20 | 83.2 |
| Msa0946330 | AT1G70880.1 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 4.18e-20 | 81.6 |
| Msa0946330 | AT1G23130.1 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 4.67e-20 | 81.6 |
| Msa0946330 | AT2G01520.1 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.71e-19 | 79.3 |
| Msa0946330 | AT1G14930.1 | 31.250 | 160 | 93 | 4 | 1 | 152 | 1 | 151 | 3.69e-19 | 79.0 |
| Msa0946330 | AT4G14060.1 | 32.026 | 153 | 101 | 3 | 1 | 152 | 1 | 151 | 3.14e-18 | 76.6 |
| Msa0946330 | AT2G01530.1 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.44e-17 | 73.9 |
| Msa0946330 | AT4G23680.1 | 30.435 | 161 | 93 | 5 | 1 | 152 | 1 | 151 | 5.50e-17 | 73.6 |
| Msa0946330 | AT1G14950.1 | 30.818 | 159 | 93 | 4 | 1 | 151 | 1 | 150 | 8.28e-17 | 73.2 |
| Msa0946330 | AT1G35260.1 | 25.828 | 151 | 108 | 3 | 2 | 150 | 1 | 149 | 1.38e-16 | 72.4 |
| Msa0946330 | AT1G35310.1 | 27.338 | 139 | 98 | 3 | 13 | 150 | 12 | 148 | 5.16e-16 | 70.9 |
| Msa0946330 | AT1G24020.1 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa0946330 | AT1G24020.2 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 1.11e-15 | 70.1 |
| Msa0946330 | AT1G30990.1 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 2.03e-15 | 69.3 |
| Msa0946330 | AT1G14940.1 | 28.758 | 153 | 106 | 3 | 1 | 152 | 1 | 151 | 6.46e-15 | 68.2 |
| Msa0946330 | AT1G14960.1 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 4.99e-14 | 65.9 |
| Msa0946330 | AT3G26460.1 | 27.922 | 154 | 107 | 4 | 1 | 152 | 1 | 152 | 3.02e-12 | 60.8 |
| Msa0946330 | AT3G26450.1 | 27.329 | 161 | 99 | 5 | 1 | 152 | 1 | 152 | 1.11e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGCAAATCTCTATTTA+AGG | 0.136603 | 6_3:-26971096 | None:intergenic |
| TTTATACATCACATGATTTA+AGG | 0.146064 | 6_3:+26968401 | None:intergenic |
| CTTGATGCAGTTTAGTTTCA+TGG | 0.232611 | 6_3:+26970908 | None:intergenic |
| AATAAGCAGTTATGACTTAA+TGG | 0.241177 | 6_3:-26968553 | Msa0946330:three_prime_UTR |
| AAAATCACTTTCAAGCTCTT+TGG | 0.248666 | 6_3:-26968804 | Msa0946330:CDS |
| TCATGTGATGTATAAATAAA+TGG | 0.259742 | 6_3:-26968394 | Msa0946330:three_prime_UTR |
| CAAATCTCTATTTAAGGCTT+GGG | 0.268383 | 6_3:-26971090 | Msa0946330:five_prime_UTR |
| AAAATCAACCGAAGCTAATA+TGG | 0.272162 | 6_3:+26968464 | None:intergenic |
| GTGGAAGTGCTGCTGTTAAA+TGG | 0.283929 | 6_3:-26968719 | Msa0946330:CDS |
| ATCCATGTCTCTAGTGCTTT+TGG | 0.286969 | 6_3:+26968632 | None:intergenic |
| GGTAAAATTAGCACCGAAAT+AGG | 0.289299 | 6_3:-26971009 | Msa0946330:CDS |
| TGATCCTCCAAATGGCTATA+TGG | 0.321241 | 6_3:-26968664 | Msa0946330:CDS |
| GGATGCTTTAACACCTATTT+CGG | 0.330979 | 6_3:+26970996 | None:intergenic |
| ATTCTTTATGACTTATCAAT+TGG | 0.363337 | 6_3:+26968582 | None:intergenic |
| GCAAATCTCTATTTAAGGCT+TGG | 0.394267 | 6_3:-26971091 | Msa0946330:five_prime_UTR |
| CAGCCTTATCAATTACTTCA+AGG | 0.406054 | 6_3:+26968742 | None:intergenic |
| ATCACTTTCAAGCTCTTTGG+TGG | 0.431743 | 6_3:-26968801 | Msa0946330:CDS |
| TATAAATAAATGGATATTTG+TGG | 0.437077 | 6_3:-26968384 | Msa0946330:three_prime_UTR |
| TTGCATAGCCATATTAGCTT+CGG | 0.441864 | 6_3:-26968472 | Msa0946330:three_prime_UTR |
| AGACATTGATGAACACTATA+AGG | 0.467942 | 6_3:-26968778 | Msa0946330:CDS |
| CAAGGGATAATATGAGCAAC+TGG | 0.471351 | 6_3:+26971060 | None:intergenic |
| AATTAGTGTGATGTTTGTAA+TGG | 0.472531 | 6_3:-26968507 | Msa0946330:three_prime_UTR |
| TGAGAATAGTTTAAAGAACT+TGG | 0.479866 | 6_3:+26970969 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.481361 | 6_3:-26968745 | Msa0946330:CDS |
| AAACAGTGGACTTATGTCAT+AGG | 0.490184 | 6_3:-26970856 | Msa0946330:intron |
| AAGTAGTCCATATAGCCATT+TGG | 0.505544 | 6_3:+26968657 | None:intergenic |
| GAGGATATTGATCCTCCAAA+TGG | 0.518489 | 6_3:-26968672 | Msa0946330:CDS |
| AACTGCATCAAGGTGATGAC+TGG | 0.533533 | 6_3:-26970897 | Msa0946330:CDS |
| CAAGATCTTCAATAATCTCA+TGG | 0.543904 | 6_3:+26968841 | None:intergenic |
| CTTGAAGTAATTGATAAGGC+TGG | 0.549528 | 6_3:-26968741 | Msa0946330:CDS |
| AAATCTCTATTTAAGGCTTG+GGG | 0.555875 | 6_3:-26971089 | Msa0946330:five_prime_UTR |
| TAATTATAAAATAACGACTT+AGG | 0.558419 | 6_3:+26968525 | None:intergenic |
| TTTCATGGACTCTTTCACAA+AGG | 0.579358 | 6_3:+26970923 | None:intergenic |
| TAGTTTAAAGAACTTGGCAG+AGG | 0.580442 | 6_3:+26970975 | None:intergenic |
| CATGAAACTAAACTGCATCA+AGG | 0.587212 | 6_3:-26970907 | Msa0946330:CDS |
| TAGTCCATATAGCCATTTGG+AGG | 0.593989 | 6_3:+26968660 | None:intergenic |
| CATGGATGCTCATCTTGTCA+AGG | 0.600309 | 6_3:-26968616 | Msa0946330:CDS |
| GTGTGATGTTTGTAATGGCA+TGG | 0.608990 | 6_3:-26968502 | Msa0946330:three_prime_UTR |
| GAAGTAATTGATAAGGCTGG+TGG | 0.619376 | 6_3:-26968738 | Msa0946330:CDS |
| TGCCAAAAGCACTAGAGACA+TGG | 0.621841 | 6_3:-26968634 | Msa0946330:CDS |
| ACATCACAACACAGATGGCA+AGG | 0.623787 | 6_3:-26968874 | Msa0946330:intron |
| GCTCTGATTCACTTAAACAG+TGG | 0.634288 | 6_3:-26970870 | Msa0946330:CDS |
| TGAATATGAGAAAATCAATG+AGG | 0.668209 | 6_3:-26968691 | Msa0946330:CDS |
| CATCAAGGTGATGACTGGCA+TGG | 0.672723 | 6_3:-26970892 | Msa0946330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGTTG+AGG | + | chr6_3:26968933-26968952 | None:intergenic | 10.0% |
| !!! | TAAAAAACTCTTATTTTTTT+TGG | + | chr6_3:26969095-26969114 | None:intergenic | 10.0% |
| !!! | AAAAAAATAAGAGTTTTTTA+AGG | - | chr6_3:26969095-26969114 | Msa0946330:intron | 10.0% |
| !!! | TAAAAGTTTAAAGTTTTTAA+AGG | - | chr6_3:26969124-26969143 | Msa0946330:intron | 10.0% |
| !! | GAAAATAAATATTATTTGTA+TGG | + | chr6_3:26969366-26969385 | None:intergenic | 10.0% |
| !! | AAGAATCTAATTAATAAATT+TGG | + | chr6_3:26969629-26969648 | None:intergenic | 10.0% |
| !! | TAAAATAAAACAAGATGATT+TGG | + | chr6_3:26968661-26968680 | None:intergenic | 15.0% |
| !! | TTAAACTAATCTATCAAAAT+TGG | - | chr6_3:26968809-26968828 | Msa0946330:CDS | 15.0% |
| !!! | AAAAAAAAAAGATTTTTGTG+CGG | - | chr6_3:26968943-26968962 | Msa0946330:intron | 15.0% |
| !!! | TTATTTTAACGTGAAATATT+CGG | - | chr6_3:26969187-26969206 | Msa0946330:intron | 15.0% |
| !!! | TTATTTTTACGTGAAATAAT+CGG | - | chr6_3:26969335-26969354 | Msa0946330:intron | 15.0% |
| !!! | TATTGCTTTGTTTAATTAAA+CGG | + | chr6_3:26969421-26969440 | None:intergenic | 15.0% |
| !! | AATATATTGATACATTGTAA+TGG | - | chr6_3:26969437-26969456 | Msa0946330:intron | 15.0% |
| !!! | TATTTGTACAAATATCATTT+TGG | + | chr6_3:26969467-26969486 | None:intergenic | 15.0% |
| !! | AAAGAAAATAGATAAAAACT+TGG | - | chr6_3:26969593-26969612 | Msa0946330:intron | 15.0% |
| !!! | AATTATGTTTTTATCTTTGA+AGG | - | chr6_3:26969752-26969771 | Msa0946330:intron | 15.0% |
| !! | ATAAAAAACAATAGATAGAA+AGG | + | chr6_3:26969918-26969937 | None:intergenic | 15.0% |
| !! | TTACTAACAACAATTAATAA+GGG | + | chr6_3:26970095-26970114 | None:intergenic | 15.0% |
| !! | TTTACTAACAACAATTAATA+AGG | + | chr6_3:26970096-26970115 | None:intergenic | 15.0% |
| !! | TTTATTTATCATGATATTGA+TGG | - | chr6_3:26970264-26970283 | Msa0946330:intron | 15.0% |
| !! | TAATTATAAAATAACGACTT+AGG | + | chr6_3:26970937-26970956 | None:intergenic | 15.0% |
| !! | TATAAATAAATGGATATTTG+TGG | - | chr6_3:26971075-26971094 | Msa0946330:five_prime_UTR | 15.0% |
| !!! | CTAATCTTTTTGTTTTGAAT+AGG | - | chr6_3:26968786-26968805 | Msa0946330:CDS | 20.0% |
| !!! | TATTTTAACGTGAAATATTC+GGG | - | chr6_3:26969188-26969207 | Msa0946330:intron | 20.0% |
| !! | ATATTAAAGGTTGTATGATT+AGG | - | chr6_3:26969286-26969305 | Msa0946330:intron | 20.0% |
| !! | TATTAAAGGTTGTATGATTA+GGG | - | chr6_3:26969287-26969306 | Msa0946330:intron | 20.0% |
| !!! | TATTTTTACGTGAAATAATC+GGG | - | chr6_3:26969336-26969355 | Msa0946330:intron | 20.0% |
| !!! | ATTGCTTTGTTTAATTAAAC+GGG | + | chr6_3:26969420-26969439 | None:intergenic | 20.0% |
| !!! | ATTAATAAATTTGGAATTGC+AGG | + | chr6_3:26969620-26969639 | None:intergenic | 20.0% |
| !! | AAAGGAAAAAAAAAAGTGAA+AGG | + | chr6_3:26969900-26969919 | None:intergenic | 20.0% |
| !! | TGTTAGTAAAGTAGTTAAAT+TGG | - | chr6_3:26970106-26970125 | Msa0946330:intron | 20.0% |
| !!! | ATCTTACCATTTGTTAAATT+CGG | - | chr6_3:26970480-26970499 | Msa0946330:intron | 20.0% |
| !! | GTCATATATGTATATATACA+GGG | - | chr6_3:26970502-26970521 | Msa0946330:intron | 20.0% |
| !! | ATTCTTTATGACTTATCAAT+TGG | + | chr6_3:26970880-26970899 | None:intergenic | 20.0% |
| !! | TTTATACATCACATGATTTA+AGG | + | chr6_3:26971061-26971080 | None:intergenic | 20.0% |
| !! | TCATGTGATGTATAAATAAA+TGG | - | chr6_3:26971065-26971084 | Msa0946330:five_prime_UTR | 20.0% |
| ! | TGAGAATAGTTTAAAGAACT+TGG | + | chr6_3:26968493-26968512 | None:intergenic | 25.0% |
| ! | TGGTTAAAAATCTGAAGAAA+TGG | - | chr6_3:26968907-26968926 | Msa0946330:intron | 25.0% |
| ! | TTCAGCAGAAATAAACTTTA+TGG | + | chr6_3:26969005-26969024 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGTTGTACGATT+AGG | - | chr6_3:26969137-26969156 | Msa0946330:intron | 25.0% |
| !!! | TTTTAAAGGTTGTACGATTA+GGG | - | chr6_3:26969138-26969157 | Msa0946330:intron | 25.0% |
| !!! | ATTTTAACGTGAAATATTCG+GGG | - | chr6_3:26969189-26969208 | Msa0946330:intron | 25.0% |
| !! | ATTTTTACGTGAAATAATCG+GGG | - | chr6_3:26969337-26969356 | Msa0946330:intron | 25.0% |
| ! | TACATGTTAAAGTACAAATG+AGG | - | chr6_3:26969684-26969703 | Msa0946330:intron | 25.0% |
| !!! | TCTTTTTAGTTTACGACTAT+TGG | - | chr6_3:26969721-26969740 | Msa0946330:intron | 25.0% |
| !! | GAGTTTAAGAGCATAAAAAA+TGG | + | chr6_3:26969862-26969881 | None:intergenic | 25.0% |
| !!! | AGGTTTGTGCATTATTTTTA+AGG | - | chr6_3:26970015-26970034 | Msa0946330:intron | 25.0% |
| ! | AGTAAAGTAGTTAAATTGGA+TGG | - | chr6_3:26970110-26970129 | Msa0946330:intron | 25.0% |
| ! | ACACATGTAAAACAAGTTTA+AGG | - | chr6_3:26970393-26970412 | Msa0946330:intron | 25.0% |
| ! | AGTATACTGAATTGAATTCA+CGG | + | chr6_3:26970425-26970444 | None:intergenic | 25.0% |
| ! | ATATGACCGAATTTAACAAA+TGG | + | chr6_3:26970489-26970508 | None:intergenic | 25.0% |
| ! | GGTCATATATGTATATATAC+AGG | - | chr6_3:26970501-26970520 | Msa0946330:intron | 25.0% |
| ! | TGAATATGAGAAAATCAATG+AGG | - | chr6_3:26970768-26970787 | Msa0946330:intron | 25.0% |
| ! | AATAAGCAGTTATGACTTAA+TGG | - | chr6_3:26970906-26970925 | Msa0946330:CDS | 25.0% |
| ! | AATTAGTGTGATGTTTGTAA+TGG | - | chr6_3:26970952-26970971 | Msa0946330:CDS | 25.0% |
| ! | CAAATCTCTATTTAAGGCTT+GGG | - | chr6_3:26968369-26968388 | Msa0946330:three_prime_UTR | 30.0% |
| ! | AAATCTCTATTTAAGGCTTG+GGG | - | chr6_3:26968370-26968389 | Msa0946330:three_prime_UTR | 30.0% |
| !! | TTTCACAAAGGTTTTGTACA+TGG | + | chr6_3:26968527-26968546 | None:intergenic | 30.0% |
| AGTTGAGTTCTGTATGATTT+CGG | - | chr6_3:26968756-26968775 | Msa0946330:CDS | 30.0% | |
| AATAGATTCCTATGAGTTGT+CGG | - | chr6_3:26969517-26969536 | Msa0946330:intron | 30.0% | |
| TTCAAGTAACTACGAAAATG+AGG | - | chr6_3:26969966-26969985 | Msa0946330:intron | 30.0% | |
| TATTGCGTTAGTTAGTGTTT+GGG | + | chr6_3:26970308-26970327 | None:intergenic | 30.0% | |
| TTATTGCGTTAGTTAGTGTT+TGG | + | chr6_3:26970309-26970328 | None:intergenic | 30.0% | |
| CAAGATCTTCAATAATCTCA+TGG | + | chr6_3:26970621-26970640 | None:intergenic | 30.0% | |
| AAAATCACTTTCAAGCTCTT+TGG | - | chr6_3:26970655-26970674 | Msa0946330:intron | 30.0% | |
| AGACATTGATGAACACTATA+AGG | - | chr6_3:26970681-26970700 | Msa0946330:intron | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | - | chr6_3:26970714-26970733 | Msa0946330:intron | 30.0% | |
| AAAATCAACCGAAGCTAATA+TGG | + | chr6_3:26970998-26971017 | None:intergenic | 30.0% | |
| ! | GCAAATCTCTATTTAAGGCT+TGG | - | chr6_3:26968368-26968387 | Msa0946330:three_prime_UTR | 35.0% |
| !! | TTTTTGGGAGAAACAAGCAA+GGG | + | chr6_3:26968419-26968438 | None:intergenic | 35.0% |
| !! | ATTTTTGGGAGAAACAAGCA+AGG | + | chr6_3:26968420-26968439 | None:intergenic | 35.0% |
| ! | TTGCTTGTTTCTCCCAAAAA+TGG | - | chr6_3:26968419-26968438 | Msa0946330:three_prime_UTR | 35.0% |
| ! | GGTAAAATTAGCACCGAAAT+AGG | - | chr6_3:26968450-26968469 | Msa0946330:three_prime_UTR | 35.0% |
| GGATGCTTTAACACCTATTT+CGG | + | chr6_3:26968466-26968485 | None:intergenic | 35.0% | |
| TAGTTTAAAGAACTTGGCAG+AGG | + | chr6_3:26968487-26968506 | None:intergenic | 35.0% | |
| TTTCATGGACTCTTTCACAA+AGG | + | chr6_3:26968539-26968558 | None:intergenic | 35.0% | |
| ! | CTTGATGCAGTTTAGTTTCA+TGG | + | chr6_3:26968554-26968573 | None:intergenic | 35.0% |
| CATGAAACTAAACTGCATCA+AGG | - | chr6_3:26968552-26968571 | Msa0946330:three_prime_UTR | 35.0% | |
| ! | AAACAGTGGACTTATGTCAT+AGG | - | chr6_3:26968603-26968622 | Msa0946330:exon | 35.0% |
| CATACAGAACTCAACTAACA+AGG | + | chr6_3:26968752-26968771 | None:intergenic | 35.0% | |
| GCATACGAAATAGTCGTTTA+AGG | - | chr6_3:26969995-26970014 | Msa0946330:intron | 35.0% | |
| ! | TTGACTTTTATGCGTTAGTG+TGG | - | chr6_3:26970341-26970360 | Msa0946330:intron | 35.0% |
| ! | TGACTTTTATGCGTTAGTGT+GGG | - | chr6_3:26970342-26970361 | Msa0946330:intron | 35.0% |
| ! | CAGCCTTATCAATTACTTCA+AGG | + | chr6_3:26970720-26970739 | None:intergenic | 35.0% |
| CTTGAAGTAATTGATAAGGC+TGG | - | chr6_3:26970718-26970737 | Msa0946330:intron | 35.0% | |
| AAGTAGTCCATATAGCCATT+TGG | + | chr6_3:26970805-26970824 | None:intergenic | 35.0% | |
| ! | TTGCATAGCCATATTAGCTT+CGG | - | chr6_3:26970987-26971006 | Msa0946330:CDS | 35.0% |
| !! | CGGTTGATTTTTCGTTTGTA+TGG | - | chr6_3:26971007-26971026 | Msa0946330:CDS | 35.0% |
| CAAGGGATAATATGAGCAAC+TGG | + | chr6_3:26968402-26968421 | None:intergenic | 40.0% | |
| GCTCTGATTCACTTAAACAG+TGG | - | chr6_3:26968589-26968608 | Msa0946330:three_prime_UTR | 40.0% | |
| CACAACTACGTCAACTTAGT+TGG | - | chr6_3:26968887-26968906 | Msa0946330:intron | 40.0% | |
| CTTAGTTACCGACAACTCAT+AGG | + | chr6_3:26969528-26969547 | None:intergenic | 40.0% | |
| CTATGAGTTGTCGGTAACTA+AGG | - | chr6_3:26969526-26969545 | Msa0946330:intron | 40.0% | |
| ! | GACTTTTATGCGTTAGTGTG+GGG | - | chr6_3:26970343-26970362 | Msa0946330:intron | 40.0% |
| CATCTGTGTTGTGATGTCAT+GGG | + | chr6_3:26970582-26970601 | None:intergenic | 40.0% | |
| ATCACTTTCAAGCTCTTTGG+TGG | - | chr6_3:26970658-26970677 | Msa0946330:intron | 40.0% | |
| GAAGTAATTGATAAGGCTGG+TGG | - | chr6_3:26970721-26970740 | Msa0946330:intron | 40.0% | |
| GAGGATATTGATCCTCCAAA+TGG | - | chr6_3:26970787-26970806 | Msa0946330:intron | 40.0% | |
| TGATCCTCCAAATGGCTATA+TGG | - | chr6_3:26970795-26970814 | Msa0946330:intron | 40.0% | |
| TAGTCCATATAGCCATTTGG+AGG | + | chr6_3:26970802-26970821 | None:intergenic | 40.0% | |
| ! | ATCCATGTCTCTAGTGCTTT+TGG | + | chr6_3:26970830-26970849 | None:intergenic | 40.0% |
| GTGTGATGTTTGTAATGGCA+TGG | - | chr6_3:26970957-26970976 | Msa0946330:CDS | 40.0% | |
| !! | TACCAGCGAGCACCATTTTT+GGG | + | chr6_3:26968434-26968453 | None:intergenic | 45.0% |
| ! | TTACCAGCGAGCACCATTTT+TGG | + | chr6_3:26968435-26968454 | None:intergenic | 45.0% |
| AACTGCATCAAGGTGATGAC+TGG | - | chr6_3:26968562-26968581 | Msa0946330:three_prime_UTR | 45.0% | |
| ! | TTTTATGCGTTAGTGTGGGG+TGG | - | chr6_3:26970346-26970365 | Msa0946330:intron | 45.0% |
| TTTATGCGTTAGTGTGGGGT+GGG | - | chr6_3:26970347-26970366 | Msa0946330:intron | 45.0% | |
| CCATCTGTGTTGTGATGTCA+TGG | + | chr6_3:26970583-26970602 | None:intergenic | 45.0% | |
| CCATGACATCACAACACAGA+TGG | - | chr6_3:26970580-26970599 | Msa0946330:intron | 45.0% | |
| ACATCACAACACAGATGGCA+AGG | - | chr6_3:26970585-26970604 | Msa0946330:intron | 45.0% | |
| !! | GTGGAAGTGCTGCTGTTAAA+TGG | - | chr6_3:26970740-26970759 | Msa0946330:intron | 45.0% |
| !! | TGCCAAAAGCACTAGAGACA+TGG | - | chr6_3:26970825-26970844 | Msa0946330:intron | 45.0% |
| CATGGATGCTCATCTTGTCA+AGG | - | chr6_3:26970843-26970862 | Msa0946330:intron | 45.0% | |
| !! | TATATATGTATATATATTAA+AGG | - | chr6_3:26969273-26969292 | Msa0946330:intron | 5.0% |
| !!! | TAAAAAAAAAGTTTTTAAAT+GGG | + | chr6_3:26969831-26969850 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAAAGTTTTTAAA+TGG | + | chr6_3:26969832-26969851 | None:intergenic | 5.0% |
| CATCAAGGTGATGACTGGCA+TGG | - | chr6_3:26968567-26968586 | Msa0946330:three_prime_UTR | 50.0% | |
| TTATGCGTTAGTGTGGGGTG+GGG | - | chr6_3:26970348-26970367 | Msa0946330:intron | 50.0% | |
| CTCCCAAAAATGGTGCTCGC+TGG | - | chr6_3:26968429-26968448 | Msa0946330:three_prime_UTR | 55.0% | |
| TATGCGTTAGTGTGGGGTGG+GGG | - | chr6_3:26970349-26970368 | Msa0946330:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 26968368 | 26971113 | 26968368 | ID=Msa0946330;Name=Msa0946330 |
| chr6_3 | mRNA | 26968368 | 26971113 | 26968368 | ID=Msa0946330-mRNA-1;Parent=Msa0946330;Name=Msa0946330-mRNA-1;_AED=0.19;_eAED=0.19;_QI=70|1|1|1|1|1|2|243|152 |
| chr6_3 | exon | 26968368 | 26968882 | 26968368 | ID=Msa0946330-mRNA-1:exon:7435;Parent=Msa0946330-mRNA-1 |
| chr6_3 | exon | 26970857 | 26971113 | 26970857 | ID=Msa0946330-mRNA-1:exon:7434;Parent=Msa0946330-mRNA-1 |
| chr6_3 | five_prime_UTR | 26971044 | 26971113 | 26971044 | ID=Msa0946330-mRNA-1:five_prime_utr;Parent=Msa0946330-mRNA-1 |
| chr6_3 | CDS | 26970857 | 26971043 | 26970857 | ID=Msa0946330-mRNA-1:cds;Parent=Msa0946330-mRNA-1 |
| chr6_3 | CDS | 26968611 | 26968882 | 26968611 | ID=Msa0946330-mRNA-1:cds;Parent=Msa0946330-mRNA-1 |
| chr6_3 | three_prime_UTR | 26968368 | 26968610 | 26968368 | ID=Msa0946330-mRNA-1:three_prime_utr;Parent=Msa0946330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
