AlfalfaGEDB | Msa0293720

M. sativa cultivar zhongmu-4 / Msa0293720

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293720	XP_003596262.1	91.984	1023	46	5	1	999	1	1011	0.0	1898

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293720	sp\|C0LGG8\|Y5343_ARATH	61.290	1023	341	13	6	990	5	1010	0.0	1212

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293720	G7IQZ2	91.984	1023	46	5	1	999	1	1011	0.0	1898

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0293720	-0.835358	1.758447e-56	-8.615850e-47
Msa0011440	Msa0293720	-0.812180	4.827604e-51	-8.615850e-47
Msa0011450	Msa0293720	-0.817840	2.676040e-52	-8.615850e-47
Msa0017300	Msa0293720	-0.808310	3.297843e-50	-8.615850e-47
Msa0029520	Msa0293720	-0.807464	4.991678e-50	-8.615850e-47
Msa0032710	Msa0293720	0.800036	1.740033e-48	-8.615850e-47
Msa0033840	Msa0293720	-0.813224	2.852456e-51	-8.615850e-47
Msa0034590	Msa0293720	-0.817126	3.875907e-52	-8.615850e-47
Msa0040470	Msa0293720	0.803979	2.691676e-49	-8.615850e-47
Msa0042520	Msa0293720	-0.800071	1.711596e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0293720	MtrunA17_Chr2g0315151	91.984	1023	46	5	1	999	1	1011	1898
Msa0293720	MtrunA17_Chr8g0359691	67.493	1009	280	10	16	997	15	1002	1310
Msa0293720	MtrunA17_Chr5g0443531	52.446	1022	423	17	11	991	9	1008	994
Msa0293720	MtrunA17_Chr5g0438071	52.231	986	405	17	31	985	27	977	941
Msa0293720	MtrunA17_Chr2g0315081	50.972	977	413	14	14	955	7	952	927
Msa0293720	MtrunA17_Chr2g0314901	49.713	1044	439	18	2	997	10	1015	923
Msa0293720	MtrunA17_Chr2g0314911	49.229	1038	451	20	3	997	4	1008	917
Msa0293720	MtrunA17_Chr2g0314821	49.449	999	438	18	12	970	9	980	909
Msa0293720	MtrunA17_Chr2g0314841	49.598	994	441	16	12	970	9	977	908
Msa0293720	MtrunA17_Chr2g0314991	52.775	883	366	12	79	931	593	1454	874

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0293720	AT1G53430.1	61.290	1023	341	13	6	990	5	1010	1212
Msa0293720	AT1G53440.1	60.672	1012	348	15	14	990	11	1007	1179
Msa0293720	AT1G53430.2	61.089	992	323	14	37	990	3	969	1165
Msa0293720	AT1G07650.1	51.469	987	423	18	8	951	3	976	931
Msa0293720	AT1G07650.2	51.158	993	423	18	8	951	3	982	928
Msa0293720	AT3G14840.2	50.361	969	413	16	7	931	5	949	917
Msa0293720	AT1G07650.3	50.881	965	395	18	27	951	25	950	889
Msa0293720	AT1G53420.1	51.747	887	381	13	97	968	92	946	869
Msa0293720	AT1G07650.4	56.662	773	310	13	194	951	1	763	834
Msa0293720	AT1G29750.2	45.207	991	484	16	9	961	19	988	804

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Find 213 sgRNAs with CRISPR-Local

Find 563 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACTTACTTGGTGTCA+CGG	0.607752	2_3:-45184963	None:intergenic
AAACGCAGCGATAGTACAGC+TGG	0.563831	2_3:+45187306	Msa0293720:CDS
AAACTTACATCATTGTCACA+TGG	0.717244	2_3:-45180071	None:intergenic
AAAGCAGATGTCTATAGCTT+TGG	0.368638	2_3:+45186760	Msa0293720:CDS
AAAGGTAACCCATCTTCCAA+AGG	0.667336	2_3:-45185291	None:intergenic
AAATCCACTTGTCTTGGGCA+GGG	0.581803	2_3:+45184882	Msa0293720:CDS
AAATGGGCTTATAGCAGTAC+AGG	0.501102	2_3:+45184174	Msa0293720:CDS
AACAAAGGTTGAACTTGGAC+TGG	0.552666	2_3:+45186153	Msa0293720:CDS
AACAGTGGTGATAAAGGATT+TGG	0.388608	2_3:+45179973	Msa0293720:CDS
AACATTATGGAAGCAGCTGG+TGG	0.574894	2_3:+45184803	Msa0293720:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAATGTAAAAACGACA+GGG	-	chr2_3:45177133-45177152	None:intergenic	30.0%
ATCTTAAAACAACAGAGGAA+AGG	+	chr2_3:45177165-45177184	Msa0293720:five_prime_UTR	30.0%
TAAGTTCATGAACCAAATTC+TGG	-	chr2_3:45177659-45177678	None:intergenic	30.0%
AATTAAATAGGGTACGTGAT+GGG	+	chr2_3:45178162-45178181	Msa0293720:intron	30.0%
AGTGCACATTTATTCATACA+CGG	-	chr2_3:45178194-45178213	None:intergenic	30.0%
TACTAGAATCCCTTTATCAT+AGG	+	chr2_3:45178491-45178510	Msa0293720:intron	30.0%
AATAGTGATGCAAATCTAAG+TGG	-	chr2_3:45178604-45178623	None:intergenic	30.0%
GAAGGAGATAATAACTTCAT+AGG	+	chr2_3:45178875-45178894	Msa0293720:intron	30.0%
ATATTTGAACAATCCTCACA+CGG	-	chr2_3:45179300-45179319	None:intergenic	30.0%
GGTAAATAACTTGAATTGGA+AGG	+	chr2_3:45179933-45179952	Msa0293720:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	45177087	45187497	45177087	ID=Msa0293720;Name=Msa0293720
chr2_3	mRNA	45177087	45187497	45177087	ID=Msa0293720-mRNA-1;Parent=Msa0293720;Name=Msa0293720-mRNA-1;_AED=0.06;_eAED=0.08;_QI=125\|0.71\|0.63\|1\|1\|1\|22\|0\|999
chr2_3	exon	45177087	45177320	45177087	ID=Msa0293720-mRNA-1:exon:14049;Parent=Msa0293720-mRNA-1
chr2_3	exon	45179905	45180085	45179905	ID=Msa0293720-mRNA-1:exon:14050;Parent=Msa0293720-mRNA-1
chr2_3	exon	45181103	45181177	45181103	ID=Msa0293720-mRNA-1:exon:14051;Parent=Msa0293720-mRNA-1
chr2_3	exon	45181364	45181435	45181364	ID=Msa0293720-mRNA-1:exon:14052;Parent=Msa0293720-mRNA-1
chr2_3	exon	45181519	45181590	45181519	ID=Msa0293720-mRNA-1:exon:14053;Parent=Msa0293720-mRNA-1
chr2_3	exon	45181742	45181813	45181742	ID=Msa0293720-mRNA-1:exon:14054;Parent=Msa0293720-mRNA-1
chr2_3	exon	45181897	45181968	45181897	ID=Msa0293720-mRNA-1:exon:14055;Parent=Msa0293720-mRNA-1
chr2_3	exon	45182082	45182153	45182082	ID=Msa0293720-mRNA-1:exon:14056;Parent=Msa0293720-mRNA-1
chr2_3	exon	45182423	45182497	45182423	ID=Msa0293720-mRNA-1:exon:14057;Parent=Msa0293720-mRNA-1
chr2_3	exon	45182594	45182665	45182594	ID=Msa0293720-mRNA-1:exon:14058;Parent=Msa0293720-mRNA-1
chr2_3	exon	45183251	45183322	45183251	ID=Msa0293720-mRNA-1:exon:14059;Parent=Msa0293720-mRNA-1
chr2_3	exon	45183420	45183485	45183420	ID=Msa0293720-mRNA-1:exon:14060;Parent=Msa0293720-mRNA-1
chr2_3	exon	45183640	45183699	45183640	ID=Msa0293720-mRNA-1:exon:14061;Parent=Msa0293720-mRNA-1
chr2_3	exon	45183785	45183848	45183785	ID=Msa0293720-mRNA-1:exon:14062;Parent=Msa0293720-mRNA-1
chr2_3	exon	45184006	45184434	45184006	ID=Msa0293720-mRNA-1:exon:14063;Parent=Msa0293720-mRNA-1
chr2_3	exon	45184779	45184974	45184779	ID=Msa0293720-mRNA-1:exon:14064;Parent=Msa0293720-mRNA-1
chr2_3	exon	45185200	45185337	45185200	ID=Msa0293720-mRNA-1:exon:14065;Parent=Msa0293720-mRNA-1
chr2_3	exon	45185623	45185735	45185623	ID=Msa0293720-mRNA-1:exon:14066;Parent=Msa0293720-mRNA-1
chr2_3	exon	45185847	45186057	45185847	ID=Msa0293720-mRNA-1:exon:14067;Parent=Msa0293720-mRNA-1
chr2_3	exon	45186144	45186381	45186144	ID=Msa0293720-mRNA-1:exon:14068;Parent=Msa0293720-mRNA-1
chr2_3	exon	45186714	45186864	45186714	ID=Msa0293720-mRNA-1:exon:14069;Parent=Msa0293720-mRNA-1
chr2_3	exon	45187108	45187497	45187108	ID=Msa0293720-mRNA-1:exon:14070;Parent=Msa0293720-mRNA-1
chr2_3	five_prime_UTR	45177087	45177211	45177087	ID=Msa0293720-mRNA-1:five_prime_utr;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45177212	45177320	45177212	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45179905	45180085	45179905	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45181103	45181177	45181103	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45181364	45181435	45181364	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45181519	45181590	45181519	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45181742	45181813	45181742	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45181897	45181968	45181897	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45182082	45182153	45182082	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45182423	45182497	45182423	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45182594	45182665	45182594	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45183251	45183322	45183251	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45183420	45183485	45183420	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45183640	45183699	45183640	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45183785	45183848	45183785	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45184006	45184434	45184006	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45184779	45184974	45184779	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45185200	45185337	45185200	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45185623	45185735	45185623	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45185847	45186057	45185847	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45186144	45186381	45186144	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45186714	45186864	45186714	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1
chr2_3	CDS	45187108	45187497	45187108	ID=Msa0293720-mRNA-1:cds;Parent=Msa0293720-mRNA-1

Gene Sequence

>Msa0293720

ATGTTTTCTCTAAGCTTCAAACATGTATCTATGTTGTTCTTTTTGTTCATGGCTTTCAATTGTTTCTCAATGTTTGGATCCAACGCTCAATCATTACCACAAGATGAAGTGAAATTGCTACAAACAATATCAGACAAGGTAAATAACTTGAATTGGAAGGTTACAAACCGTTCATGCAACAGTGGTGATAAAGGATTTGGTAACCAGATTATTGTAGAGGATCAAATTGTAAGGAATGTCACATGTGATTGCTCTTTCAACTCTAGAACTGTTTGCCATGTGACAATGATCGATCTCACTAGGAACTATCTAAATGGCTCAATTCCAAAGAGTCTTGGAGGCCTCTCATCATCACTAGTGACACTGTCACTTTTGGGAAATAGACTTAGTGGTCAAATTCCCTCAGAAATTGGTGATATTGCCACATTACAAGAACTGAATGTAGAGGATAATCAACTTGAAGGGAATCTTCCTCCAAACCTTGGAAATTTGAAGAACTTGCAGAAATTATTGCTTTCTGCAAATAATTTTACAGGGACAATACCAGAAGCATTTGGCAATCTAAAGAATCTCACAAATTTTAGGATAGATGGAAGCAGTTTATCTGGGAAGATCCCAAGTTTTATCGGAAACTGGACCAAACTTGAAAGATTGGATTTGCAAGGCACGTCCTTGGAAGGTCCAATTCCTCCTGCTGTATCGGTCTTGAAAAATTTGAAGGAATTGAGGATATCTGACTTGAAGGGAAACACAACGATGACATTTCCTGATTTGAAGGATTTGAAACGCATAAAAAGCCTGGAATTGAGAAATTGCTTAATCACTGGTCCTATTCCAGACTACATTGGTGAATTGGAAAATCTAAAAACTATAGATTTGAGCTCGAACAGATTGACTGGTCCAATACCAGACTCACTTCAGGACTTGGAATCAATCAATTTCATGTTTCTGACAAATAACTCTCTGAGTGGAACAATTCCCGGATGGATACTGAGCAACAAACAGAACTTTGACTTATCTTTCAACAATTTTACTGAATCTTCTGCTTCTGATTGCCAGCTCTTGGATGTGAACTTAGCTTCCAGCGTCTCTCCTTCAGCAAACACTTCGTATGTTCATGCGATCCTGCTTACGTGTTTACTAAATGAAATTGTGATACTGATAGCTTCTGTTGAATATTTCTCTGTAGATCATTCACTGTTCATAAACTGTGGAGGACCTGCAACTGAGTTTGATGACAATGAATATGAAGCTGATGATCATCTACGTGGAATTTCGAACTTTGTTCCAAGTGTTAGTGGAAAATGGGCTTATAGCAGTACAGGAGTATTTCTAGGAAATGAGAGAGCTGATTATGTTGCAAGAAATGTGTTCTCTTTGAAGATTAATAATGGCTCTGAATACTACCAAACAGCCCGCATTGCACCGATATCTCTTAAATATTTTGGATTTTGTATGCTGAAGGGAAATTATAATGTGAAACTTCATTTTGCTGAGATAATGTTTTCTGATGACCAGAAATTCAGCAGCCTTGGAAGGCGCATATTCGATGTTTCAATTCAAGGTCGTAAATATTTGAAAGATTTTAACATTATGGAAGCAGCTGGTGGAGTTGGCAAGGGAATCACTAGGGATTTTAATGTTGATGTTAATGATAGCACTTTGGAAATCCACTTGTCTTGGGCAGGGAAAGGAACTAATGCCATTCCTATGAGAGGTGTATATGGACCTCTTATTTCTGCTATCACCGTGACACCAAACTTTAAAATTCCTTCAAATGGGTTGTCTGCTGGAGCAATTGCTGGAATTGTGGTTGGATCGTTGGCATTTGTCATGCTCATACTCTTTGTCCTTTGGAAGATGGGTTACCTTTGTGGAAAAGATCAAACAGACAAAGAGCTCCTAGAATTAAAAACAGGCTATTACAGTTTGAGACAAATTAAAGTTGCTACAAATAACTTTGATCCAGTAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTGCCGTGATTGCTGTTAAACAGCTCTCTTCCAAATCAAAGCAAGGGAACCGCGAATTCGTTAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTCAAGCTTTACGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAATACATGGAGAACAATAGTCTTGCTCGCGCTCTTTTCGGTAAACCAGAACAAAGGTTGAACTTGGACTGGCGTACGAGAATGAAGATCTGTGTCGGGATAGCAAGGGGTTTAGCTTATCTTCATGAGGAATCAAGATTGAAAATAGTACATAGAGATATTAAAGCAACCAATGTCTTACTCGATAAGAATCTGAATGCAAAGATCTCTGATTTCGGTTTAGCCAAGCTTGATGAAGAAGAAAATACCCATATCAGCACACGAATTGCTGGGACAATAGGTTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGGGTTGTAGCTTTAGAGATTGTTAGTGGAATGAGCAACACAAATTATCGGCCAAAAGAGGAGTTTGTTTATCTTCTGGATTGGGCCTATGTTCTCCAAGAACAAGGAAACCTTCTGGAATTAGTGGACCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCAATGAGAATGCTGCAATTGGCACTCCTTTGCACCAATCCATCTCCAACTCTTAGACCACCAATGTCATCTGTAGTAAGCATGCTTGAAGGAAATACTCCGATTCAAGCGCCGATAATCAAACGCAGCGATAGTACAGCTGGTGCAAGATTTAAAGCCTTTGAGCTTCTATCACAAGATAGCCAAACTACTTCAACATTCTTACAAGATAGTAGAGAACTAAGAGGCAAATCAATGGATGGACCATGGGTTGATTCTTCCATATCTTATCCAAGTAAAGATGAGTATTCTTCATCTGAGAAGCTTATTTGA

Protein sequence

>Msa0293720

MFSLSFKHVSMLFFLFMAFNCFSMFGSNAQSLPQDEVKLLQTISDKVNNLNWKVTNRSCNSGDKGFGNQIIVEDQIVRNVTCDCSFNSRTVCHVTMIDLTRNYLNGSIPKSLGGLSSSLVTLSLLGNRLSGQIPSEIGDIATLQELNVEDNQLEGNLPPNLGNLKNLQKLLLSANNFTGTIPEAFGNLKNLTNFRIDGSSLSGKIPSFIGNWTKLERLDLQGTSLEGPIPPAVSVLKNLKELRISDLKGNTTMTFPDLKDLKRIKSLELRNCLITGPIPDYIGELENLKTIDLSSNRLTGPIPDSLQDLESINFMFLTNNSLSGTIPGWILSNKQNFDLSFNNFTESSASDCQLLDVNLASSVSPSANTSYVHAILLTCLLNEIVILIASVEYFSVDHSLFINCGGPATEFDDNEYEADDHLRGISNFVPSVSGKWAYSSTGVFLGNERADYVARNVFSLKINNGSEYYQTARIAPISLKYFGFCMLKGNYNVKLHFAEIMFSDDQKFSSLGRRIFDVSIQGRKYLKDFNIMEAAGGVGKGITRDFNVDVNDSTLEIHLSWAGKGTNAIPMRGVYGPLISAITVTPNFKIPSNGLSAGAIAGIVVGSLAFVMLILFVLWKMGYLCGKDQTDKELLELKTGYYSLRQIKVATNNFDPVNKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKPEQRLNLDWRTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGNTPIQAPIIKRSDSTAGARFKAFELLSQDSQTTSTFLQDSRELRGKSMDGPWVDSSISYPSKDEYSSSEKLI*