AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131090 MtrunA17_Chr1g0199701 98.214 280 5 0 21 300 1 280 0.0 573
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131090 AT2G39000.1 66.319 288 80 4 21 297 1 282 3.17e-136 387
Msa0131090 AT2G39000.3 76.444 225 53 0 73 297 2 226 1.51e-133 378
Msa0131090 AT2G39000.4 63.776 196 54 4 21 205 1 190 1.36e-79 240
Msa0131090 AT2G39000.2 63.590 195 54 4 21 204 1 189 4.98e-79 239

Find 78 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATCAAACTTTCTTATT+TGG 0.151315 1_3:-61730965 Msa0131090:CDS
ACCTGTCTGGTTGCTGTTAT+TGG 0.195810 1_3:-61730995 Msa0131090:CDS
TTTGATATGTTTATAGGTTT+CGG 0.295198 1_3:+61732631 None:intergenic
TTTCAAATCTATAAAGGTTC+CGG 0.297267 1_3:-61729571 Msa0131090:CDS
TGTCGCAGAGGCCCCTTTCT+AGG 0.313734 1_3:+61730842 None:intergenic
GCAAGGTTTCAAATCTATAA+AGG 0.323365 1_3:-61729577 Msa0131090:CDS
AATCAACTACTTTACCATCT+TGG 0.323444 1_3:-61732579 Msa0131090:CDS
TCATGATCTTGGTAGGGTAT+AGG 0.326524 1_3:+61729245 None:intergenic
TCTAATGGAAATGAATATTC+AGG 0.338599 1_3:+61731088 None:intergenic
CATGATCTTGGTAGGGTATA+GGG 0.344245 1_3:+61729246 None:intergenic
ATCAACTACTTTACCATCTT+GGG 0.351438 1_3:-61732578 Msa0131090:CDS
AGGCAAGAATAGAGGATTGT+TGG 0.356437 1_3:-61731144 Msa0131090:CDS
ATCCTCAACACAAAATCTAA+TGG 0.371362 1_3:+61731073 None:intergenic
GGCACGACATCCCCAACTTC+TGG 0.376576 1_3:+61729653 None:intergenic
TTTCTTACTCCCTCTCAATC+AGG 0.386333 1_3:-61732529 Msa0131090:intron
AGTGAAGACTTCAAGATTGC+GGG 0.393136 1_3:-61730941 Msa0131090:CDS
GCCTCTCTAACAGTGATCTC+AGG 0.394323 1_3:+61731163 None:intergenic
GGCAAGAATAGAGGATTGTT+GGG 0.399207 1_3:-61731143 Msa0131090:CDS
TTCAAATCTATAAAGGTTCC+GGG 0.414198 1_3:-61729570 Msa0131090:CDS
TGTGTTGAGGATGGATAGAT+TGG 0.415569 1_3:-61731062 Msa0131090:CDS
CTTCATTTAGATATGAACTT+TGG 0.421571 1_3:+61729292 None:intergenic
AGAATCACAAGCCAGAAGTT+GGG 0.428773 1_3:-61729664 Msa0131090:CDS
AGGTTCCGGGAGGAGCTAAC+TGG 0.431391 1_3:-61729557 Msa0131090:CDS
GACGTGTGTAAGTAAACCTT+TGG 0.434233 1_3:-61729366 Msa0131090:three_prime_UTR
AGCTAAACAATTGGTGGCTA+AGG 0.435007 1_3:-61729688 Msa0131090:CDS
TGCAGACTTTCTACCTAGAA+AGG 0.446932 1_3:-61730855 Msa0131090:CDS
ATGAAGTTGAACTTCACATC+TGG 0.450823 1_3:+61729516 None:intergenic
AGAAAAGAAATGCAGTAAGA+TGG 0.454557 1_3:-61729400 Msa0131090:three_prime_UTR
CAGAATCACAAGCCAGAAGT+TGG 0.456663 1_3:-61729665 Msa0131090:CDS
GCAGGATTCTCTTTACCAAA+TGG 0.460775 1_3:-61731028 Msa0131090:CDS
GAAAGGAATAGCTAAACAAT+TGG 0.467703 1_3:-61729697 Msa0131090:CDS
GCAGACTTTCTACCTAGAAA+GGG 0.481732 1_3:-61730854 Msa0131090:CDS
TAGATTTGAAACCTTGCCCT+TGG 0.481800 1_3:+61729583 None:intergenic
AAAGAAAATTCATGAGATGA+AGG 0.486076 1_3:+61732550 None:intergenic
TGGTATAACTTTGTTGCCGC+AGG 0.491255 1_3:+61729603 None:intergenic
AGATTGGTGGCTATGTTAGC+AGG 0.496959 1_3:-61731046 Msa0131090:CDS
GAACAAATCAACAACTTGAC+TGG 0.498714 1_3:+61731198 None:intergenic
GAAAAGAAATGCAGTAAGAT+GGG 0.500082 1_3:-61729399 Msa0131090:three_prime_UTR
GTGGTATTGACCGCATTTCG+TGG 0.521118 1_3:+61732671 None:intergenic
TGAAGAATTGAAGCTTATAA+CGG 0.523998 1_3:-61729274 Msa0131090:three_prime_UTR
TGTTAGAGAGGCAAGAATAG+AGG 0.524179 1_3:-61731152 Msa0131090:CDS
TTCTACCTTTGCAATTCCAA+AGG 0.530245 1_3:+61729350 None:intergenic
CTCAACAAGGGATATGTGGC+TGG 0.532427 1_3:-61730899 Msa0131090:CDS
TATTGACCGCATTTCGTGGA+GGG 0.534157 1_3:+61732675 None:intergenic
GCCAATAACAGCAACCAGAC+AGG 0.535502 1_3:+61730994 None:intergenic
AATAGAGGATTGTTGGGAAG+TGG 0.538776 1_3:-61731137 Msa0131090:CDS
GAATCACAAGCCAGAAGTTG+GGG 0.540089 1_3:-61729663 Msa0131090:CDS
AAGCCTCAACAAGGGATATG+TGG 0.555870 1_3:-61730903 Msa0131090:CDS
AGGAATAGCTAAACAATTGG+TGG 0.557067 1_3:-61729694 Msa0131090:CDS
CCTCTCTAACAGTGATCTCA+GGG 0.558058 1_3:+61731164 None:intergenic
AATAAGTAATAACACTGTGA+AGG 0.562173 1_3:+61732752 None:intergenic
TGGTTGCAAAAGAACCTGTC+TGG 0.566369 1_3:-61731008 Msa0131090:CDS
ATAAGTAATAACACTGTGAA+GGG 0.567780 1_3:+61732753 None:intergenic
GTAAACCTTTGGAATTGCAA+AGG 0.573124 1_3:-61729355 Msa0131090:three_prime_UTR
CCCTGAGATCACTGTTAGAG+AGG 0.573199 1_3:-61731164 Msa0131090:CDS
AAGTGAAGACTTCAAGATTG+CGG 0.578803 1_3:-61730942 Msa0131090:CDS
GTTGAGGATGGATAGATTGG+TGG 0.579094 1_3:-61731059 Msa0131090:CDS
AGGGGCCTCTGCGACAGAGA+AGG 0.581862 1_3:-61730835 Msa0131090:intron
TGAGGCCAGTTAGCTCCTCC+CGG 0.584487 1_3:+61729552 None:intergenic
CAGCCACATATCCCTTGTTG+AGG 0.606889 1_3:+61730900 None:intergenic
GAAATGCGGTCAATACCACT+TGG 0.610789 1_3:-61732667 Msa0131090:CDS
ACAAAGTTATACCAAGGGCA+AGG 0.614543 1_3:-61729594 Msa0131090:CDS
TATAGGTTTCGGAGATACTG+AGG 0.630791 1_3:+61732642 None:intergenic
GTATTGACCGCATTTCGTGG+AGG 0.631265 1_3:+61732674 None:intergenic
TGGGAAATTAAGCCTCAACA+AGG 0.631474 1_3:-61730912 Msa0131090:CDS
TAAATCGCAGTGTAATGCAA+TGG 0.632285 1_3:+61729632 None:intergenic
CAGACTTTCTACCTAGAAAG+GGG 0.636163 1_3:-61730853 Msa0131090:CDS
GATGAAGGTGAAACCCAAGA+TGG 0.636670 1_3:+61732565 None:intergenic
AATTGCATACATATCAAATG+TGG 0.643430 1_3:-61729742 Msa0131090:CDS
CGGCAACAAAGTTATACCAA+GGG 0.644825 1_3:-61729599 Msa0131090:CDS
AGACAACCCTCCACGAAATG+CGG 0.648290 1_3:-61732681 Msa0131090:CDS
GCGGCAACAAAGTTATACCA+AGG 0.651915 1_3:-61729600 Msa0131090:CDS
ACTCACCTTCTCTGTCGCAG+AGG 0.668717 1_3:+61730830 None:intergenic
GGGAAATTAAGCCTCAACAA+GGG 0.686786 1_3:-61730911 Msa0131090:CDS
CTGCGATTTACGAAATCCTG+CGG 0.698179 1_3:-61729619 Msa0131090:CDS
GGAGATACTGAGGTTCCAAG+TGG 0.704704 1_3:+61732652 None:intergenic
AAATCTATAAAGGTTCCGGG+AGG 0.724022 1_3:-61729567 Msa0131090:CDS
CTCTCTAACAGTGATCTCAG+GGG 0.746520 1_3:+61731165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+AGG - chr1_3:61729539-61729558 Msa0131090:CDS 0.0%
!!! AAATTAATTTTAACATGTTT+TGG + chr1_3:61731488-61731507 None:intergenic 10.0%
!!! GAAATTTTTGATATGTTTAT+AGG + chr1_3:61729388-61729407 None:intergenic 15.0%
!!! ACTTTTTCAAGTTTTTAATT+TGG - chr1_3:61729506-61729525 Msa0131090:CDS 15.0%
!!! AAACTGATTAATTTTGTTAT+TGG - chr1_3:61729595-61729614 Msa0131090:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr1_3:61730361-61730380 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr1_3:61730360-61730379 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr1_3:61730139-61730158 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr1_3:61730270-61730289 Msa0131090:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr1_3:61730360-61730379 Msa0131090:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr1_3:61730361-61730380 Msa0131090:intron 15.0%
!!! TAATTAACCCTATTTTAAAT+TGG - chr1_3:61730425-61730444 Msa0131090:intron 15.0%
!!! GCATGTTTTTAAATAATTTT+GGG + chr1_3:61730641-61730660 None:intergenic 15.0%
!!! TGCATGTTTTTAAATAATTT+TGG + chr1_3:61730642-61730661 None:intergenic 15.0%
!!! ATAAAAAGTAGTTTGTATTT+TGG + chr1_3:61731442-61731461 None:intergenic 15.0%
!!! TGTATCTTTTTCTTATAATT+GGG + chr1_3:61731684-61731703 None:intergenic 15.0%
!!! TTGTATCTTTTTCTTATAAT+TGG + chr1_3:61731685-61731704 None:intergenic 15.0%
!! TTATGTATAAAAACTATTGT+AGG - chr1_3:61732240-61732259 Msa0131090:intron 15.0%
!! AAAAATTTGTATAGTTACAT+TGG - chr1_3:61732681-61732700 Msa0131090:CDS 15.0%
!! TTTGATATGTTTATAGGTTT+CGG + chr1_3:61729382-61729401 None:intergenic 20.0%
!!! TTTTTAAGGAATTTACTAGA+TGG - chr1_3:61729553-61729572 Msa0131090:CDS 20.0%
!!! TTTTAAGGAATTTACTAGAT+GGG - chr1_3:61729554-61729573 Msa0131090:CDS 20.0%
!! ACCTATTTATTTACTACAAT+TGG - chr1_3:61729801-61729820 Msa0131090:intron 20.0%
!!! TTAGTTAGGTAGTATTTTAA+AGG - chr1_3:61729872-61729891 Msa0131090:intron 20.0%
!!! TAGTTAGGTAGTATTTTAAA+GGG - chr1_3:61729873-61729892 Msa0131090:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr1_3:61730009-61730028 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr1_3:61730010-61730029 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr1_3:61730104-61730123 None:intergenic 20.0%
!!! ATTTAATTTAGAGTCATGTT+TGG - chr1_3:61731805-61731824 Msa0131090:intron 20.0%
!!! TTTAATTTAGAGTCATGTTT+GGG - chr1_3:61731806-61731825 Msa0131090:intron 20.0%
!! ATCAAAATTATAGCATTAAG+TGG - chr1_3:61731836-61731855 Msa0131090:intron 20.0%
!!! TATGTTTCTAACTATGTATA+AGG - chr1_3:61732145-61732164 Msa0131090:intron 20.0%
! AAAGAAAATTCATGAGATGA+AGG + chr1_3:61729463-61729482 None:intergenic 25.0%
!!! AATTTTGTTATTGGATGAAG+TGG - chr1_3:61729604-61729623 Msa0131090:CDS 25.0%
!!! TTTTCAATTAGTGTTGTTCA+AGG - chr1_3:61729744-61729763 Msa0131090:CDS 25.0%
!! TTTCAATTAGTGTTGTTCAA+GGG - chr1_3:61729745-61729764 Msa0131090:CDS 25.0%
! GCCAATTGTAGTAAATAAAT+AGG + chr1_3:61729805-61729824 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr1_3:61729976-61729995 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr1_3:61730298-61730317 Msa0131090:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr1_3:61730299-61730318 Msa0131090:intron 25.0%
! CAACATGTATTTGAATACTA+CGG + chr1_3:61730452-61730471 None:intergenic 25.0%
! GAATTCTAAGCTTGATTAAT+AGG - chr1_3:61730480-61730499 Msa0131090:intron 25.0%
!!! TATATTTTCACTTTTGAACC+TGG - chr1_3:61730595-61730614 Msa0131090:intron 25.0%
! CAAAGTTAACATCACAAATT+AGG + chr1_3:61730747-61730766 None:intergenic 25.0%
!! CTAATTTGTGATGTTAACTT+TGG - chr1_3:61730745-61730764 Msa0131090:intron 25.0%
! TCTAATGGAAATGAATATTC+AGG + chr1_3:61730925-61730944 None:intergenic 25.0%
! CTTGATCAAACTTTCTTATT+TGG - chr1_3:61731045-61731064 Msa0131090:CDS 25.0%
!!! TTAAAACTTGTTTCTGAATC+TGG - chr1_3:61731202-61731221 Msa0131090:CDS 25.0%
!!! TAAAACTTGTTTCTGAATCT+GGG - chr1_3:61731203-61731222 Msa0131090:CDS 25.0%
! AGATAACTTGAAAATTACAC+AGG + chr1_3:61731404-61731423 None:intergenic 25.0%
!!! ACAAACTACTTTTTATCTAG+AGG - chr1_3:61731446-61731465 Msa0131090:intron 25.0%
!! ATCTTTTTCTTATAATTGGG+AGG + chr1_3:61731681-61731700 None:intergenic 25.0%
! TGCATTAAAGGACAAAATAA+GGG + chr1_3:61731743-61731762 None:intergenic 25.0%
! ATGCATTAAAGGACAAAATA+AGG + chr1_3:61731744-61731763 None:intergenic 25.0%
! ATATGGAATAGATGCATTAA+AGG + chr1_3:61731755-61731774 None:intergenic 25.0%
! ATCTATTCCATATAAACAGT+AGG - chr1_3:61731762-61731781 Msa0131090:intron 25.0%
!!! ATTGTTTTTTTCTTTGACCA+GGG - chr1_3:61731875-61731894 Msa0131090:intron 25.0%
!! ACATAGTTTACCATTTTGAA+GGG + chr1_3:61732130-61732149 None:intergenic 25.0%
!! AACATAGTTTACCATTTTGA+AGG + chr1_3:61732131-61732150 None:intergenic 25.0%
! TATAAAAACTATTGTAGGAC+TGG - chr1_3:61732245-61732264 Msa0131090:intron 25.0%
! AATTGCATACATATCAAATG+TGG - chr1_3:61732268-61732287 Msa0131090:intron 25.0%
! AGAGAAAAATTTAGACAGAA+AGG - chr1_3:61732296-61732315 Msa0131090:intron 25.0%
! TTTCAAATCTATAAAGGTTC+CGG - chr1_3:61732439-61732458 Msa0131090:intron 25.0%
! CTTCATTTAGATATGAACTT+TGG + chr1_3:61732721-61732740 None:intergenic 25.0%
! TGAAGAATTGAAGCTTATAA+CGG - chr1_3:61732736-61732755 Msa0131090:exon 25.0%
AATCAACTACTTTACCATCT+TGG - chr1_3:61729431-61729450 Msa0131090:three_prime_UTR 30.0%
ATCAACTACTTTACCATCTT+GGG - chr1_3:61729432-61729451 Msa0131090:three_prime_UTR 30.0%
AAAAAGTTACCTGATTGAGA+GGG + chr1_3:61729493-61729512 None:intergenic 30.0%
!! AACTTTTCTTCTGAGAATGT+GGG - chr1_3:61729699-61729718 Msa0131090:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr1_3:61730392-61730411 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr1_3:61730391-61730410 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr1_3:61729977-61729996 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr1_3:61730236-61730255 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr1_3:61730391-61730410 Msa0131090:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr1_3:61730392-61730411 Msa0131090:intron 30.0%
! CTACGGTCCAATTTAAAATA+GGG + chr1_3:61730435-61730454 None:intergenic 30.0%
! ACTACGGTCCAATTTAAAAT+AGG + chr1_3:61730436-61730455 None:intergenic 30.0%
TCTAAGCTTGATTAATAGGA+AGG - chr1_3:61730484-61730503 Msa0131090:intron 30.0%
ATGTAAGTTAAGGAGTGAAA+TGG - chr1_3:61730698-61730717 Msa0131090:intron 30.0%
TAAGGAGTGAAATGGATATA+TGG - chr1_3:61730706-61730725 Msa0131090:intron 30.0%
AAGGAGTGAAATGGATATAT+GGG - chr1_3:61730707-61730726 Msa0131090:intron 30.0%
TTTGTGATGTTAACTTTGGT+AGG - chr1_3:61730749-61730768 Msa0131090:intron 30.0%
TTGGTAGGAACTTAAAGTTA+TGG - chr1_3:61730764-61730783 Msa0131090:intron 30.0%
GAACTTAAAGTTATGGTGTT+TGG - chr1_3:61730771-61730790 Msa0131090:intron 30.0%
! TTCCATTAGATTTTGTGTTG+AGG - chr1_3:61730935-61730954 Msa0131090:CDS 30.0%
ATCCTCAACACAAAATCTAA+TGG + chr1_3:61730940-61730959 None:intergenic 30.0%
! ATTAGATTTTGTGTTGAGGA+TGG - chr1_3:61730939-61730958 Msa0131090:CDS 30.0%
GAAAATTACACAGGAATGAA+AGG + chr1_3:61731395-61731414 None:intergenic 30.0%
AAAAATTGTTGAGACATGTC+TGG + chr1_3:61731542-61731561 None:intergenic 30.0%
TCTAAATTAAATGCTCTTCG+AGG + chr1_3:61731797-61731816 None:intergenic 30.0%
!!! GATTGTTTTTTTCTTTGACC+AGG - chr1_3:61731874-61731893 Msa0131090:intron 30.0%
!! TTCTGTTTTAAACAAGTGCA+AGG + chr1_3:61732008-61732027 None:intergenic 30.0%
ACTAGTAACATGAGTAAACT+AGG + chr1_3:61732194-61732213 None:intergenic 30.0%
GAAAGGAATAGCTAAACAAT+TGG - chr1_3:61732313-61732332 Msa0131090:intron 30.0%
GCAAGGTTTCAAATCTATAA+AGG - chr1_3:61732433-61732452 Msa0131090:intron 30.0%
TTCAAATCTATAAAGGTTCC+GGG - chr1_3:61732440-61732459 Msa0131090:intron 30.0%
AGAAAAGAAATGCAGTAAGA+TGG - chr1_3:61732610-61732629 Msa0131090:CDS 30.0%
GAAAAGAAATGCAGTAAGAT+GGG - chr1_3:61732611-61732630 Msa0131090:CDS 30.0%
GAAAAAGTTACCTGATTGAG+AGG + chr1_3:61729494-61729513 None:intergenic 35.0%
!! AGATGGGTTTGTTGAATTTG+TGG - chr1_3:61729570-61729589 Msa0131090:CDS 35.0%
!! CAACTTTTCTTCTGAGAATG+TGG - chr1_3:61729698-61729717 Msa0131090:CDS 35.0%
!! ACTTTTCTTCTGAGAATGTG+GGG - chr1_3:61729700-61729719 Msa0131090:CDS 35.0%
ACAATTGGCAATGCTATTGT+TGG - chr1_3:61729816-61729835 Msa0131090:intron 35.0%
ATAAGTGGGTAGGTTTAGTT+AGG - chr1_3:61729858-61729877 Msa0131090:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr1_3:61730376-61730395 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr1_3:61730376-61730395 Msa0131090:intron 35.0%
TGATGCTTGATTGCGAAATT+TGG + chr1_3:61730551-61730570 None:intergenic 35.0%
TAGCTATTAGAAGATCAACC+AGG + chr1_3:61730616-61730635 None:intergenic 35.0%
CTAGCCATCTATGTAAGTTA+AGG - chr1_3:61730688-61730707 Msa0131090:intron 35.0%
CACTCCTTAACTTACATAGA+TGG + chr1_3:61730695-61730714 None:intergenic 35.0%
AGGAGTGAAATGGATATATG+GGG - chr1_3:61730708-61730727 Msa0131090:intron 35.0%
AAGTTATGGTGTTTGGATGT+AGG - chr1_3:61730778-61730797 Msa0131090:intron 35.0%
GAACAAATCAACAACTTGAC+TGG + chr1_3:61730815-61730834 None:intergenic 35.0%
AAGTGAAGACTTCAAGATTG+CGG - chr1_3:61731068-61731087 Msa0131090:CDS 35.0%
!! AGACAAGCTAGAAGCATTTA+AGG + chr1_3:61731596-61731615 None:intergenic 35.0%
TTCTTATACATGAGACTGGA+GGG + chr1_3:61731640-61731659 None:intergenic 35.0%
TTTCTTATACATGAGACTGG+AGG + chr1_3:61731641-61731660 None:intergenic 35.0%
! CCTTTTCTTATACATGAGAC+TGG + chr1_3:61731644-61731663 None:intergenic 35.0%
CCAGTCTCATGTATAAGAAA+AGG - chr1_3:61731641-61731660 Msa0131090:intron 35.0%
GGTAACACCTACTGTTTATA+TGG + chr1_3:61731772-61731791 None:intergenic 35.0%
AATTAAATGCTCTTCGAGGA+TGG + chr1_3:61731793-61731812 None:intergenic 35.0%
ATGTGATAAATGTTACTCCC+TGG + chr1_3:61731895-61731914 None:intergenic 35.0%
TCTCTTCATATTGATCACTG+AGG - chr1_3:61732035-61732054 Msa0131090:intron 35.0%
AGGAATAGCTAAACAATTGG+TGG - chr1_3:61732316-61732335 Msa0131090:intron 35.0%
TAAATCGCAGTGTAATGCAA+TGG + chr1_3:61732381-61732400 None:intergenic 35.0%
! TTCACATCTGGAGAAGTTTT+TGG + chr1_3:61732485-61732504 None:intergenic 35.0%
ATGAAGTTGAACTTCACATC+TGG + chr1_3:61732497-61732516 None:intergenic 35.0%
!! GTAAACCTTTGGAATTGCAA+AGG - chr1_3:61732655-61732674 Msa0131090:CDS 35.0%
TTCTACCTTTGCAATTCCAA+AGG + chr1_3:61732663-61732682 None:intergenic 35.0%
TATAGGTTTCGGAGATACTG+AGG + chr1_3:61729371-61729390 None:intergenic 40.0%
TTTCTTACTCCCTCTCAATC+AGG - chr1_3:61729481-61729500 Msa0131090:exon 40.0%
! CAATTAGTGTTGTTCAAGGG+AGG - chr1_3:61729748-61729767 Msa0131090:CDS 40.0%
ACTCGTAGTTCCTGATAAGT+GGG - chr1_3:61729844-61729863 Msa0131090:intron 40.0%
ACTAAACCTACCCACTTATC+AGG + chr1_3:61729857-61729876 None:intergenic 40.0%
TGGCTAGCGTAAAATCTAGA+GGG + chr1_3:61730675-61730694 None:intergenic 40.0%
ATGGCTAGCGTAAAATCTAG+AGG + chr1_3:61730676-61730695 None:intergenic 40.0%
TGTTAGAGAGGCAAGAATAG+AGG - chr1_3:61730858-61730877 Msa0131090:CDS 40.0%
AGGCAAGAATAGAGGATTGT+TGG - chr1_3:61730866-61730885 Msa0131090:CDS 40.0%
GGCAAGAATAGAGGATTGTT+GGG - chr1_3:61730867-61730886 Msa0131090:CDS 40.0%
AATAGAGGATTGTTGGGAAG+TGG - chr1_3:61730873-61730892 Msa0131090:CDS 40.0%
TGTGTTGAGGATGGATAGAT+TGG - chr1_3:61730948-61730967 Msa0131090:CDS 40.0%
GCAGGATTCTCTTTACCAAA+TGG - chr1_3:61730982-61731001 Msa0131090:CDS 40.0%
! CAGGTTCTTTTGCAACCATT+TGG + chr1_3:61731000-61731019 None:intergenic 40.0%
AGTGAAGACTTCAAGATTGC+GGG - chr1_3:61731069-61731088 Msa0131090:CDS 40.0%
!! TTCAAGATTGCGGGTTTTGA+TGG - chr1_3:61731078-61731097 Msa0131090:CDS 40.0%
!! TCAAGATTGCGGGTTTTGAT+GGG - chr1_3:61731079-61731098 Msa0131090:CDS 40.0%
TGGGAAATTAAGCCTCAACA+AGG - chr1_3:61731098-61731117 Msa0131090:CDS 40.0%
GGGAAATTAAGCCTCAACAA+GGG - chr1_3:61731099-61731118 Msa0131090:CDS 40.0%
TGCAGACTTTCTACCTAGAA+AGG - chr1_3:61731155-61731174 Msa0131090:CDS 40.0%
GCAGACTTTCTACCTAGAAA+GGG - chr1_3:61731156-61731175 Msa0131090:CDS 40.0%
CAGACTTTCTACCTAGAAAG+GGG - chr1_3:61731157-61731176 Msa0131090:CDS 40.0%
TGACATGCGATGAAAGAACA+TGG + chr1_3:61731960-61731979 None:intergenic 40.0%
ATTGATCACTGAGGCAAGAA+TGG - chr1_3:61732044-61732063 Msa0131090:intron 40.0%
!! CTGAGGCAAGAATGGATTTT+TGG - chr1_3:61732052-61732071 Msa0131090:intron 40.0%
TCCTGCATTACCCTTCAAAA+TGG - chr1_3:61732117-61732136 Msa0131090:intron 40.0%
!! ACCATTTTGAAGGGTAATGC+AGG + chr1_3:61732121-61732140 None:intergenic 40.0%
! AGCTAAACAATTGGTGGCTA+AGG - chr1_3:61732322-61732341 Msa0131090:intron 40.0%
AGAATCACAAGCCAGAAGTT+GGG - chr1_3:61732346-61732365 Msa0131090:intron 40.0%
CGGCAACAAAGTTATACCAA+GGG - chr1_3:61732411-61732430 Msa0131090:intron 40.0%
ACAAAGTTATACCAAGGGCA+AGG - chr1_3:61732416-61732435 Msa0131090:intron 40.0%
! TAGATTTGAAACCTTGCCCT+TGG + chr1_3:61732430-61732449 None:intergenic 40.0%
AAATCTATAAAGGTTCCGGG+AGG - chr1_3:61732443-61732462 Msa0131090:intron 40.0%
!!! TCTGGAGAAGTTTTTGGTTG+AGG + chr1_3:61732479-61732498 None:intergenic 40.0%
GACGTGTGTAAGTAAACCTT+TGG - chr1_3:61732644-61732663 Msa0131090:CDS 40.0%
TATTGACCGCATTTCGTGGA+GGG + chr1_3:61729338-61729357 None:intergenic 45.0%
GAAATGCGGTCAATACCACT+TGG - chr1_3:61729343-61729362 Msa0131090:three_prime_UTR 45.0%
GATGAAGGTGAAACCCAAGA+TGG + chr1_3:61729448-61729467 None:intergenic 45.0%
! TAGTGTTGTTCAAGGGAGGT+AGG - chr1_3:61729752-61729771 Msa0131090:intron 45.0%
GACTCGTAGTTCCTGATAAG+TGG - chr1_3:61729843-61729862 Msa0131090:intron 45.0%
GTAGTTCCTGATAAGTGGGT+AGG - chr1_3:61729848-61729867 Msa0131090:intron 45.0%
GGCTAGCGTAAAATCTAGAG+GGG + chr1_3:61730674-61730693 None:intergenic 45.0%
GAAATGGATATATGGGGTGC+TGG - chr1_3:61730714-61730733 Msa0131090:intron 45.0%
CTCTCTAACAGTGATCTCAG+GGG + chr1_3:61730848-61730867 None:intergenic 45.0%
CCTCTCTAACAGTGATCTCA+GGG + chr1_3:61730849-61730868 None:intergenic 45.0%
GTTGAGGATGGATAGATTGG+TGG - chr1_3:61730951-61730970 Msa0131090:CDS 45.0%
! AGATTGGTGGCTATGTTAGC+AGG - chr1_3:61730964-61730983 Msa0131090:CDS 45.0%
TGGTTGCAAAAGAACCTGTC+TGG - chr1_3:61731002-61731021 Msa0131090:CDS 45.0%
! ACCTGTCTGGTTGCTGTTAT+TGG - chr1_3:61731015-61731034 Msa0131090:CDS 45.0%
AAGCCTCAACAAGGGATATG+TGG - chr1_3:61731107-61731126 Msa0131090:CDS 45.0%
TGAATCTGGGTTTGTGAGTG+AGG - chr1_3:61731216-61731235 Msa0131090:intron 45.0%
ACACAGGAATGAAAGGCAAG+CGG + chr1_3:61731388-61731407 None:intergenic 45.0%
CTGAATTCGCTCTTGTCTTC+CGG - chr1_3:61731513-61731532 Msa0131090:intron 45.0%
CGCATGTCAATAGTTCTTCG+TGG - chr1_3:61731971-61731990 Msa0131090:intron 45.0%
CAGAATCACAAGCCAGAAGT+TGG - chr1_3:61732345-61732364 Msa0131090:intron 45.0%
GAATCACAAGCCAGAAGTTG+GGG - chr1_3:61732347-61732366 Msa0131090:intron 45.0%
CTGCGATTTACGAAATCCTG+CGG - chr1_3:61732391-61732410 Msa0131090:intron 45.0%
TGGTATAACTTTGTTGCCGC+AGG + chr1_3:61732410-61732429 None:intergenic 45.0%
GCGGCAACAAAGTTATACCA+AGG - chr1_3:61732410-61732429 Msa0131090:intron 45.0%
!!! ATATGTAATTTTTTTTTTAT+AGG - chr1_3:61730331-61730350 Msa0131090:intron 5.0%
!!! TATGTAATTTTTTTTTTATA+GGG - chr1_3:61730332-61730351 Msa0131090:intron 5.0%
AGACAACCCTCCACGAAATG+CGG - chr1_3:61729329-61729348 Msa0131090:three_prime_UTR 50.0%
! GTATTGACCGCATTTCGTGG+AGG + chr1_3:61729339-61729358 None:intergenic 50.0%
!! GTGGTATTGACCGCATTTCG+TGG + chr1_3:61729342-61729361 None:intergenic 50.0%
GGAGATACTGAGGTTCCAAG+TGG + chr1_3:61729361-61729380 None:intergenic 50.0%
CCCTGAGATCACTGTTAGAG+AGG - chr1_3:61730846-61730865 Msa0131090:CDS 50.0%
GCCTCTCTAACAGTGATCTC+AGG + chr1_3:61730850-61730869 None:intergenic 50.0%
GCCAATAACAGCAACCAGAC+AGG + chr1_3:61731019-61731038 None:intergenic 50.0%
CAGCCACATATCCCTTGTTG+AGG + chr1_3:61731113-61731132 None:intergenic 50.0%
CTCAACAAGGGATATGTGGC+TGG - chr1_3:61731111-61731130 Msa0131090:CDS 50.0%
GTTGAGACATGTCTGGACTC+CGG + chr1_3:61731535-61731554 None:intergenic 50.0%
! ATGAGACTGGAGGGAGTATG+TGG + chr1_3:61731631-61731650 None:intergenic 50.0%
ACTCACCTTCTCTGTCGCAG+AGG + chr1_3:61731183-61731202 None:intergenic 55.0%
CTACCGCTCTGACTGCAGTG+CGG + chr1_3:61730518-61730537 None:intergenic 60.0%
TGTCGCAGAGGCCCCTTTCT+AGG + chr1_3:61731171-61731190 None:intergenic 60.0%
GGCACGACATCCCCAACTTC+TGG + chr1_3:61732360-61732379 None:intergenic 60.0%
AGGTTCCGGGAGGAGCTAAC+TGG - chr1_3:61732453-61732472 Msa0131090:intron 60.0%
TGAGGCCAGTTAGCTCCTCC+CGG + chr1_3:61732461-61732480 None:intergenic 60.0%
CAGCCGCACTGCAGTCAGAG+CGG - chr1_3:61730512-61730531 Msa0131090:intron 65.0%
AGGGGCCTCTGCGACAGAGA+AGG - chr1_3:61731175-61731194 Msa0131090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61729259 61732773 61729259 ID=Msa0131090;Name=Msa0131090
chr1_3 mRNA 61729259 61732773 61729259 ID=Msa0131090-mRNA-1;Parent=Msa0131090;Name=Msa0131090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=27|1|1|1|1|1|3|223|300
chr1_3 exon 61729259 61729770 61729259 ID=Msa0131090-mRNA-1:exon:20521;Parent=Msa0131090-mRNA-1
chr1_3 exon 61730836 61731232 61730836 ID=Msa0131090-mRNA-1:exon:20520;Parent=Msa0131090-mRNA-1
chr1_3 exon 61732530 61732773 61732530 ID=Msa0131090-mRNA-1:exon:20519;Parent=Msa0131090-mRNA-1
chr1_3 five_prime_UTR 61732747 61732773 61732747 ID=Msa0131090-mRNA-1:five_prime_utr;Parent=Msa0131090-mRNA-1
chr1_3 CDS 61732530 61732746 61732530 ID=Msa0131090-mRNA-1:cds;Parent=Msa0131090-mRNA-1
chr1_3 CDS 61730836 61731232 61730836 ID=Msa0131090-mRNA-1:cds;Parent=Msa0131090-mRNA-1
chr1_3 CDS 61729482 61729770 61729482 ID=Msa0131090-mRNA-1:cds;Parent=Msa0131090-mRNA-1
chr1_3 three_prime_UTR 61729259 61729481 61729259 ID=Msa0131090-mRNA-1:three_prime_utr;Parent=Msa0131090-mRNA-1
Gene Sequence

>Msa0131090

ATGACTCTTGTAAGCAGCAACAACACTCTTTCTTTGAGCTCAAAGACAACCCTCCACGAAATGCGGTCAATACCACTTGGAACCTCAGTATCTCCGAAACCTATAAACATATCAAAAATTTCATCTTTTAATACTTATTTTAAGAAATCAACTACTTTACCATCTTGGGTTTCACCTTCATCTCATGAATTTTCTTTTCTTACTCCCTCTCAATCAGGATTATGCAGAGCCAGTCAAGTTGTTGATTTGTTCTCAACTGTGTCCCCTGAGATCACTGTTAGAGAGGCAAGAATAGAGGATTGTTGGGAAGTGGCAGAGACTCACTGCAGCTCTTTCTTTCCTGAATATTCATTTCCATTAGATTTTGTGTTGAGGATGGATAGATTGGTGGCTATGTTAGCAGGATTCTCTTTACCAAATGGTTGCAAAAGAACCTGTCTGGTTGCTGTTATTGGCAATTCACTTGATCAAACTTTCTTATTTGGAAGTGAAGACTTCAAGATTGCGGGTTTTGATGGGAAATTAAGCCTCAACAAGGGATATGTGGCTGGCATATTAACAGTAGATACTGTTGCAGACTTTCTACCTAGAAAGGGGCCTCTGCGACAGAGAAGGACTGGAATTGCATACATATCAAATGTGGCAGTGAGAGAAAAATTTAGACAGAAAGGAATAGCTAAACAATTGGTGGCTAAGGCAGAATCACAAGCCAGAAGTTGGGGATGTCGTGCCATTGCATTACACTGCGATTTACGAAATCCTGCGGCAACAAAGTTATACCAAGGGCAAGGTTTCAAATCTATAAAGGTTCCGGGAGGAGCTAACTGGCCTCAACCAAAAACTTCTCCAGATGTGAAGTTCAACTTCATGATGAAGCTTCTCAACAAATCAGCAGTTTCTTAA

Protein sequence

>Msa0131090

MTLVSSNNTLSLSSKTTLHEMRSIPLGTSVSPKPINISKISSFNTYFKKSTTLPSWVSPSSHEFSFLTPSQSGLCRASQVVDLFSTVSPEITVREARIEDCWEVAETHCSSFFPEYSFPLDFVLRMDRLVAMLAGFSLPNGCKRTCLVAVIGNSLDQTFLFGSEDFKIAGFDGKLSLNKGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRQKGIAKQLVAKAESQARSWGCRAIALHCDLRNPAATKLYQGQGFKSIKVPGGANWPQPKTSPDVKFNFMMKLLNKSAVS*