AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120320 MtrunA17_Chr1g0178631 94.925 335 17 0 1 335 1 335 0.0 588
Msa0120320 MtrunA17_Chr3g0077631 35.556 315 160 8 31 334 37 319 1.55e-49 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120320 AT5G03880.1 72.414 290 80 0 45 334 49 338 4.30e-161 454
Msa0120320 AT4G10000.1 42.254 213 115 3 127 334 119 328 6.82e-52 175
Msa0120320 AT4G10000.2 42.254 213 115 3 127 334 119 328 6.82e-52 175

Find 99 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTCGCACGAAAATT+TGG 0.131482 1_3:+44985384 None:intergenic
TCTAATGCAAATTCTGTTTC+TGG 0.144741 1_3:+44988191 None:intergenic
AGACGAAATAATTAAGTATT+TGG 0.152096 1_3:-44985002 Msa0120320:CDS
CACCGAAGCCACTTAAATTA+TGG 0.168936 1_3:-44984171 Msa0120320:CDS
TCGCAGAAACAAGATATTTA+TGG 0.190483 1_3:-44988530 Msa0120320:five_prime_UTR
CGAAAATTTGGGCCGTTTCT+TGG 0.207802 1_3:+44985396 None:intergenic
ATTTAAATTGAGTATTAATT+AGG 0.227247 1_3:-44983229 Msa0120320:three_prime_UTR
TAGAGAAATAGTTGCTGTTT+TGG 0.248195 1_3:-44985445 Msa0120320:CDS
GACAAGACTCTTGAGATTCT+TGG 0.268285 1_3:-44988051 Msa0120320:CDS
GTCCATACCTTTCGACAAAA+TGG 0.270523 1_3:+44985588 None:intergenic
TGATATAGAATATTTCGTTT+TGG 0.299080 1_3:+44983615 None:intergenic
AAGTATTTGGTTGGAACATA+TGG 0.302490 1_3:-44984989 Msa0120320:intron
TTTGTTTGGGGAAATGGTTT+TGG 0.305124 1_3:+44988384 None:intergenic
TTGCTCTTTCGCTTTGCTAC+TGG 0.307870 1_3:-44988015 Msa0120320:CDS
CAACCTTCGCACGAAAATTT+GGG 0.318898 1_3:+44985385 None:intergenic
GAAAATTTGGGCCGTTTCTT+GGG 0.320564 1_3:+44985397 None:intergenic
TCAAATTCATATATCTCAAT+AGG 0.320762 1_3:+44985771 None:intergenic
TACATTGAAACGCCAGTGTT+TGG 0.321278 1_3:+44985031 None:intergenic
TTTCTCAATTCTCAGTTCAT+AGG 0.325348 1_3:-44988245 Msa0120320:CDS
GATCTTATAGCAAAGCGTTT+AGG 0.329835 1_3:+44988075 None:intergenic
ATAGCAAAGCGTTTAGGTTC+AGG 0.338103 1_3:+44988081 None:intergenic
ACCGAAGCCACTTAAATTAT+GGG 0.347189 1_3:-44984170 Msa0120320:CDS
GTTTCCCCACGTTTATTTGT+TGG 0.371016 1_3:+44988614 None:intergenic
AAATATCTTGTTTCTGCGAT+TGG 0.376326 1_3:+44988534 None:intergenic
AATATTCTATATCAGAAAAC+TGG 0.378479 1_3:-44983606 Msa0120320:CDS
TCAGAAAACTGGACATTTCC+AGG 0.380253 1_3:-44983595 Msa0120320:intron
TTCAAAGGCAGTATAGTTGA+TGG 0.386470 1_3:+44983046 None:intergenic
TTCTTTCTCATTTGTTTCCA+AGG 0.387801 1_3:-44986590 Msa0120320:CDS
TTTGTTCTGGAAAATGAAAC+AGG 0.388136 1_3:+44988222 None:intergenic
AGTTGAAAAGCATATTCATT+TGG 0.388475 1_3:+44986556 None:intergenic
ACATTGAAACGCCAGTGTTT+GGG 0.402036 1_3:+44985032 None:intergenic
ATTTGGTGGAATTTCATCCT+TGG 0.404155 1_3:+44986573 None:intergenic
TATATCTCAATAGGCTTCTC+TGG 0.412301 1_3:+44985780 None:intergenic
ACGTGAAGTACTTGTGGAAT+TGG 0.413589 1_3:-44983797 Msa0120320:CDS
GAAATAATTAAGTATTTGGT+TGG 0.416181 1_3:-44984998 Msa0120320:CDS
GCCCATAATTTAAGTGGCTT+CGG 0.425263 1_3:+44984169 None:intergenic
GGAGACAATCTTACCATGTA+AGG 0.426269 1_3:+44985336 None:intergenic
CGGTTAGTCAGCAACGGTAT+TGG 0.428419 1_3:+44988423 None:intergenic
AGGCAAAGTGGTTGATCTAT+TGG 0.431916 1_3:+44988455 None:intergenic
ATTCCTCTTACTTTATCGCT+TGG 0.434103 1_3:-44984501 Msa0120320:CDS
ACTTAAATTATGGGCTTATG+AGG 0.436645 1_3:-44984161 Msa0120320:intron
TTGGTGTTGCTTTACTGACT+TGG 0.441405 1_3:+44988481 None:intergenic
CTAATGCAAATTCTGTTTCT+GGG 0.441537 1_3:+44988192 None:intergenic
GTAAAAGAAACATCAAAGAT+AGG 0.441714 1_3:-44985810 Msa0120320:CDS
AACATTTCAACACCAGTGTT+CGG 0.442159 1_3:+44983450 None:intergenic
TGAAAAGCATATTCATTTGG+TGG 0.447995 1_3:+44986559 None:intergenic
TTCTATCCTTGCCCAAGAAA+CGG 0.451827 1_3:-44985408 Msa0120320:CDS
TCCAAGGTAATGACCATGGC+TGG 0.452936 1_3:-44988285 Msa0120320:exon
GTGGTTGATCTATTGGCTCT+TGG 0.456545 1_3:+44988462 None:intergenic
AATCCAAGCGATAAAGTAAG+AGG 0.457533 1_3:+44984498 None:intergenic
TCATAAGCCCATAATTTAAG+TGG 0.458921 1_3:+44984163 None:intergenic
TCATTGTTTGTTGTCCTACA+AGG 0.460814 1_3:-44983069 Msa0120320:three_prime_UTR
CGTGCGAAGGTTGTTGAGAT+GGG 0.462625 1_3:-44985375 Msa0120320:CDS
ACTTGCGGTCTTGCTATGCT+TGG 0.464063 1_3:-44984368 Msa0120320:CDS
AGTATAGTTGATGGCCTTGT+AGG 0.472077 1_3:+44983055 None:intergenic
TAGCAAAGCGTTTAGGTTCA+GGG 0.474563 1_3:+44988082 None:intergenic
TGTTATGTCTGTCTCTGTCT+TGG 0.477532 1_3:-44983274 Msa0120320:three_prime_UTR
GTAATGACCATGGCTGGAAC+AGG 0.477850 1_3:-44988279 Msa0120320:CDS
TCGTGCGAAGGTTGTTGAGA+TGG 0.480686 1_3:-44985376 Msa0120320:CDS
TAAAGTTACACAATGGTTTG+AGG 0.484867 1_3:-44983146 Msa0120320:three_prime_UTR
AGCAAAGCGTTTAGGTTCAG+GGG 0.498149 1_3:+44988083 None:intergenic
TCCAGCCATGGTCATTACCT+TGG 0.498674 1_3:+44988284 None:intergenic
AGCTTAAAAGTTAAAACTGT+GGG 0.499533 1_3:-44983123 Msa0120320:three_prime_UTR
TATCTTGTTTCTGCGATTGG+AGG 0.501529 1_3:+44988537 None:intergenic
CATGGTCATTACCTTGGAAA+AGG 0.508029 1_3:+44988290 None:intergenic
GGCTTCGGTGGTAACTTCGC+TGG 0.508413 1_3:+44984184 None:intergenic
TAAAACACAGTTCCCTTACA+TGG 0.513518 1_3:-44985349 Msa0120320:intron
AGTAGCAAAGCGAAAGAGCA+AGG 0.520076 1_3:+44988017 None:intergenic
TTTGGGCCGTTTCTTGGGCA+AGG 0.527655 1_3:+44985402 None:intergenic
TTGGTGGTAATTTGTTTGGA+CGG 0.533505 1_3:+44988403 None:intergenic
AGATGTTTCTGTTTCTGACA+TGG 0.537859 1_3:+44988167 None:intergenic
ATCTTGTTTCTGCGATTGGA+GGG 0.538985 1_3:+44988538 None:intergenic
TTGAGATATATGAATTTGAA+AGG 0.542729 1_3:-44985767 Msa0120320:intron
CAGAGTTCCTGTTCCAGCCA+TGG 0.549073 1_3:+44988272 None:intergenic
AATCGTACGTGAAGTACTTG+TGG 0.549531 1_3:-44983803 Msa0120320:CDS
AAAATGATATTGACATGCAA+AGG 0.556582 1_3:+44983373 None:intergenic
AAGGATAGAAAAGAATATCA+AGG 0.558191 1_3:+44985421 None:intergenic
TCAGCAACGGTATTGGAAAG+AGG 0.561051 1_3:+44988430 None:intergenic
CATAATTTAAGTGGCTTCGG+TGG 0.561588 1_3:+44984172 None:intergenic
CAAAGCGAAAGAGCAAGGGA+AGG 0.562207 1_3:+44988022 None:intergenic
TTTCATTGTAGTTGTGCTAG+GGG 0.574387 1_3:-44983642 Msa0120320:intron
TGGAAAGAGGGAAGGCAAAG+TGG 0.575219 1_3:+44988443 None:intergenic
CAGCAACGGTATTGGAAAGA+GGG 0.580571 1_3:+44988431 None:intergenic
TGTTGATGATGAAGTTGAAG+TGG 0.581369 1_3:+44988140 None:intergenic
AAAGCGAAAGAGCAAGGGAA+GGG 0.581925 1_3:+44988023 None:intergenic
TTTGGACGGTTAGTCAGCAA+CGG 0.602059 1_3:+44988417 None:intergenic
GTAGCAAAGCGAAAGAGCAA+GGG 0.611002 1_3:+44988018 None:intergenic
GAGCTTAAAAGTTAAAACTG+TGG 0.616814 1_3:-44983124 Msa0120320:three_prime_UTR
ACTTACTTGACAAGCAAATG+TGG 0.620078 1_3:+44983769 None:intergenic
AACGGTATTGGAAAGAGGGA+AGG 0.621072 1_3:+44988435 None:intergenic
GAGACAATCTTACCATGTAA+GGG 0.623184 1_3:+44985337 None:intergenic
TATTAGGTTGACCCAAACAC+TGG 0.638176 1_3:-44985043 Msa0120320:intron
GCAAAGCGTTTAGGTTCAGG+GGG 0.639513 1_3:+44988084 None:intergenic
GCTAACCAACAAATAAACGT+GGG 0.652353 1_3:-44988619 Msa0120320:five_prime_UTR
AGCTAACCAACAAATAAACG+TGG 0.654549 1_3:-44988620 Msa0120320:five_prime_UTR
TCAACAATAAAGTTACACAA+TGG 0.664926 1_3:-44983153 Msa0120320:three_prime_UTR
TATGCTTGGTCGTATTACGA+AGG 0.667471 1_3:-44984354 Msa0120320:intron
GCGAAGGTTGTTGAGATGGG+TGG 0.681372 1_3:-44985372 Msa0120320:CDS
CTAACCAACAAATAAACGTG+GGG 0.710173 1_3:-44988618 Msa0120320:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATAAAGTTTTTTTTTT+TGG + chr1_3:44984435-44984454 None:intergenic 10.0%
!! ATTTAAATTGAGTATTAATT+AGG - chr1_3:44988428-44988447 Msa0120320:five_prime_UTR 10.0%
!!! TTTTTAAGGTTTTTTTGTTT+GGG + chr1_3:44983289-44983308 None:intergenic 15.0%
!! ATAACAATTAAACAAAATTC+TGG + chr1_3:44984181-44984200 None:intergenic 15.0%
!!! ATTAAGAAATAACAATTTTC+TGG - chr1_3:44986591-44986610 Msa0120320:CDS 15.0%
!! TATACATTAATTTCAATTTG+TGG - chr1_3:44987371-44987390 Msa0120320:intron 15.0%
!! TATAACTTATAATCTAGTAA+TGG + chr1_3:44987579-44987598 None:intergenic 15.0%
!!! TTTTAAGGTTTTTTTGTTTG+GGG + chr1_3:44983288-44983307 None:intergenic 20.0%
!!! GTTTTTAAGGTTTTTTTGTT+TGG + chr1_3:44983290-44983309 None:intergenic 20.0%
!!! AGTTTTTTTTTTTGGAAACT+TGG + chr1_3:44984427-44984446 None:intergenic 20.0%
!!! TGTATATTTTCTTTCTTACA+TGG + chr1_3:44984660-44984679 None:intergenic 20.0%
!! TAGATAACTCAAAAATAAGT+TGG + chr1_3:44984751-44984770 None:intergenic 20.0%
!!! TTAAGAAATCTGTTTTGAAT+TGG - chr1_3:44984814-44984833 Msa0120320:intron 20.0%
!! GCATATAAACTATATCAAAT+TGG + chr1_3:44984971-44984990 None:intergenic 20.0%
!! TATGTAATAATGATCAATGA+GGG + chr1_3:44985141-44985160 None:intergenic 20.0%
!! TTATGTAATAATGATCAATG+AGG + chr1_3:44985142-44985161 None:intergenic 20.0%
!!! ATGTTAATGGATGAATTATT+AGG - chr1_3:44985197-44985216 Msa0120320:intron 20.0%
!!! TGTTAATGGATGAATTATTA+GGG - chr1_3:44985198-44985217 Msa0120320:intron 20.0%
!! GTGAAAATGTTAAACATTTA+AGG - chr1_3:44985577-44985596 Msa0120320:intron 20.0%
!! AAAATAAAATACAGAGGAAA+GGG + chr1_3:44985765-44985784 None:intergenic 20.0%
!! AAAAATAAAATACAGAGGAA+AGG + chr1_3:44985766-44985785 None:intergenic 20.0%
!! AACTGAAAAATAAAATACAG+AGG + chr1_3:44985771-44985790 None:intergenic 20.0%
!! TCAAATTCATATATCTCAAT+AGG + chr1_3:44985889-44985908 None:intergenic 20.0%
!! TTGAGATATATGAATTTGAA+AGG - chr1_3:44985890-44985909 Msa0120320:intron 20.0%
!! ACAAAAGATAAATATTGAGA+GGG + chr1_3:44985928-44985947 None:intergenic 20.0%
!! TACAAAAGATAAATATTGAG+AGG + chr1_3:44985929-44985948 None:intergenic 20.0%
!!! GTAATTTTACATTAACAGTA+TGG - chr1_3:44985946-44985965 Msa0120320:intron 20.0%
!!! TTGTTTTGTTGATTTTTTTG+AGG + chr1_3:44986345-44986364 None:intergenic 20.0%
!! AAAAATCAACAAAACAAAGT+TGG - chr1_3:44986348-44986367 Msa0120320:intron 20.0%
!!! AGTTTCTTGTTATGATTTTT+TGG - chr1_3:44986372-44986391 Msa0120320:intron 20.0%
!!! GTTTCTTGTTATGATTTTTT+GGG - chr1_3:44986373-44986392 Msa0120320:intron 20.0%
!! AATATTAAATAACCATCACA+AGG + chr1_3:44986560-44986579 None:intergenic 20.0%
!! TGTGATGGTTATTTAATATT+TGG - chr1_3:44986560-44986579 Msa0120320:CDS 20.0%
!!! AATAACAATTTTCTGGTATT+AGG - chr1_3:44986598-44986617 Msa0120320:intron 20.0%
!! AGACGAAATAATTAAGTATT+TGG - chr1_3:44986655-44986674 Msa0120320:intron 20.0%
!! GAAATAATTAAGTATTTGGT+TGG - chr1_3:44986659-44986678 Msa0120320:intron 20.0%
!!! AAGTTTTATAAGCTCTATTT+AGG - chr1_3:44986820-44986839 Msa0120320:intron 20.0%
!!! TTCATTGTTTCTAAAATTTC+AGG - chr1_3:44987436-44987455 Msa0120320:intron 20.0%
!!! TCATTGTTTCTAAAATTTCA+GGG - chr1_3:44987437-44987456 Msa0120320:intron 20.0%
!! CTAGATTATAAGTTATAGAT+TGG - chr1_3:44987582-44987601 Msa0120320:intron 20.0%
!!! ATTTTACATACTTGAAAACA+TGG - chr1_3:44987647-44987666 Msa0120320:intron 20.0%
!!! GTTATATCAAGCTTTTTTAT+AGG - chr1_3:44987748-44987767 Msa0120320:intron 20.0%
!! ACTAAACTAAGAAATACATA+TGG + chr1_3:44987932-44987951 None:intergenic 20.0%
!!! ATTTCTTAGTTTAGTCTTAT+TGG - chr1_3:44987937-44987956 Msa0120320:intron 20.0%
!!! GATATAGAATATTTCGTTTT+GGG + chr1_3:44988044-44988063 None:intergenic 20.0%
!!! TGATATAGAATATTTCGTTT+TGG + chr1_3:44988045-44988064 None:intergenic 20.0%
!! AATATTCTATATCAGAAAAC+TGG - chr1_3:44988051-44988070 Msa0120320:CDS 20.0%
!! ATGTGTATATTTGCATAAAA+TGG + chr1_3:44988101-44988120 None:intergenic 20.0%
!!! CTCAATTTAAATTTTACAAG+AGG + chr1_3:44988420-44988439 None:intergenic 20.0%
!! AGAAAAAAATGATCAAATAG+AGG - chr1_3:44988470-44988489 Msa0120320:five_prime_UTR 20.0%
! CATACATGCATTTAACAAAA+AGG + chr1_3:44983784-44983803 None:intergenic 25.0%
! TAAATGCATGTATGTTATGA+AGG - chr1_3:44983790-44983809 Msa0120320:CDS 25.0%
!! GTTCAGGTAAATGTTTATTT+TGG - chr1_3:44984514-44984533 Msa0120320:CDS 25.0%
!!! AAATGTTTATTTTGGAGTGA+TGG - chr1_3:44984522-44984541 Msa0120320:intron 25.0%
!!! GATTTTTTACATAGGTTCAA+TGG - chr1_3:44984586-44984605 Msa0120320:intron 25.0%
! AAAAGATTCTGCTGAATTAT+TGG - chr1_3:44984860-44984879 Msa0120320:intron 25.0%
!! CCATTTTCATATCATATGAA+CGG + chr1_3:44984890-44984909 None:intergenic 25.0%
! TAAATTTACTGAGATTCTCT+TGG - chr1_3:44985000-44985019 Msa0120320:CDS 25.0%
!! AGTTGAAAAGCATATTCATT+TGG + chr1_3:44985104-44985123 None:intergenic 25.0%
! GATGTTAGTACTTATGTTAA+TGG - chr1_3:44985184-44985203 Msa0120320:intron 25.0%
! GATATGTAATAGGATGTAAT+AGG + chr1_3:44985285-44985304 None:intergenic 25.0%
! GAAACAAACTGATATGTAAT+AGG + chr1_3:44985295-44985314 None:intergenic 25.0%
! TTAATCAAACAGCTAACTAA+AGG + chr1_3:44985400-44985419 None:intergenic 25.0%
! GAATCCTAGTAATTTCATTT+GGG + chr1_3:44985535-44985554 None:intergenic 25.0%
! TGAATCCTAGTAATTTCATT+TGG + chr1_3:44985536-44985555 None:intergenic 25.0%
! GTAAAAGAAACATCAAAGAT+AGG - chr1_3:44985847-44985866 Msa0120320:intron 25.0%
! CTATTCCTTAATCTTCATAA+TGG + chr1_3:44985989-44986008 None:intergenic 25.0%
! TTCTTTAATAATGTTCTTCG+TGG - chr1_3:44986031-44986050 Msa0120320:intron 25.0%
! AAGGATAGAAAAGAATATCA+AGG + chr1_3:44986239-44986258 None:intergenic 25.0%
! AAGTTAATGCAAAAACTATC+CGG - chr1_3:44986446-44986465 Msa0120320:intron 25.0%
!! AATAACGTGTGTTAGATTTT+AGG - chr1_3:44986752-44986771 Msa0120320:intron 25.0%
!! ATACTCATTTCTGAAAAGTA+TGG + chr1_3:44986921-44986940 None:intergenic 25.0%
!! AGTATTTTACCACATACAAA+GGG - chr1_3:44986936-44986955 Msa0120320:intron 25.0%
!! GTATTTTTCTCACAATGTTA+TGG + chr1_3:44987010-44987029 None:intergenic 25.0%
!!! AGTAATTTCTAGAACCTATA+GGG + chr1_3:44987058-44987077 None:intergenic 25.0%
!! TTTATCGCTTGGATTTTTAA+CGG - chr1_3:44987167-44987186 Msa0120320:intron 25.0%
!!! ATTAGTTTTTATCACCAGAA+AGG - chr1_3:44987211-44987230 Msa0120320:intron 25.0%
!! GAATTTGTTCATTAAGCATT+AGG + chr1_3:44987549-44987568 None:intergenic 25.0%
! ACTTATAATCTAGTAATGGT+TGG + chr1_3:44987575-44987594 None:intergenic 25.0%
! ATCACTGATATGATTTATTC+AGG - chr1_3:44987815-44987834 Msa0120320:intron 25.0%
! TCACTGATATGATTTATTCA+GGG - chr1_3:44987816-44987835 Msa0120320:intron 25.0%
! AATGGAATCAATAAAATACC+TGG + chr1_3:44988083-44988102 None:intergenic 25.0%
! ACCATCAATATTAACATCAT+CGG + chr1_3:44988157-44988176 None:intergenic 25.0%
!! GATGTTAATATTGATGGTTA+TGG - chr1_3:44988159-44988178 Msa0120320:CDS 25.0%
! AAAATGATATTGACATGCAA+AGG + chr1_3:44988287-44988306 None:intergenic 25.0%
!!! TTCAGTAATTGATTTTTGTG+AGG - chr1_3:44988333-44988352 Msa0120320:five_prime_UTR 25.0%
!! TTTTACAAGAGGAAAAATGA+AGG + chr1_3:44988409-44988428 None:intergenic 25.0%
! TCAACAATAAAGTTACACAA+TGG - chr1_3:44988504-44988523 Msa0120320:five_prime_UTR 25.0%
! AGCTTAAAAGTTAAAACTGT+GGG - chr1_3:44988534-44988553 Msa0120320:five_prime_UTR 25.0%
!! AAATATCTTGTTTCTGCGAT+TGG + chr1_3:44983126-44983145 None:intergenic 30.0%
TCGCAGAAACAAGATATTTA+TGG - chr1_3:44983127-44983146 Msa0120320:three_prime_UTR 30.0%
!! GAGTTTTGTGTGTGTTTTTA+AGG + chr1_3:44983303-44983322 None:intergenic 30.0%
!!! GAACAGTTTCTTTTGTTGTT+GGG + chr1_3:44983348-44983367 None:intergenic 30.0%
TTTCTCAATTCTCAGTTCAT+AGG - chr1_3:44983412-44983431 Msa0120320:CDS 30.0%
!! TTTGTTCTGGAAAATGAAAC+AGG + chr1_3:44983438-44983457 None:intergenic 30.0%
! CTAATGCAAATTCTGTTTCT+GGG + chr1_3:44983468-44983487 None:intergenic 30.0%
TCTAATGCAAATTCTGTTTC+TGG + chr1_3:44983469-44983488 None:intergenic 30.0%
TGTTTGCAATAAGAAGAGAA+GGG + chr1_3:44983700-44983719 None:intergenic 30.0%
! TACTTCATTTCTAACGCTTT+TGG - chr1_3:44983730-44983749 Msa0120320:intron 30.0%
ATTATGTAATCACATGCGTT+AGG - chr1_3:44983872-44983891 Msa0120320:intron 30.0%
TTATGTAATCACATGCGTTA+GGG - chr1_3:44983873-44983892 Msa0120320:intron 30.0%
! TGCACAAATTAATACTGACT+GGG + chr1_3:44983983-44984002 None:intergenic 30.0%
ATGCACAAATTAATACTGAC+TGG + chr1_3:44983984-44984003 None:intergenic 30.0%
!! TATTAATTTGTGCATCGACT+TGG - chr1_3:44983989-44984008 Msa0120320:intron 30.0%
ACCTGTAATTGTTTGATCAA+AGG - chr1_3:44984078-44984097 Msa0120320:intron 30.0%
CCTGTAATTGTTTGATCAAA+GGG - chr1_3:44984079-44984098 Msa0120320:intron 30.0%
ATTGTTTGATCAAAGGGATT+TGG - chr1_3:44984085-44984104 Msa0120320:intron 30.0%
TTTGAATTTGACACCTAAAG+AGG + chr1_3:44984278-44984297 None:intergenic 30.0%
!!! TTTTTTGGAAACTTGGTATC+TGG + chr1_3:44984420-44984439 None:intergenic 30.0%
TCACATTATATGCACAATCT+AGG + chr1_3:44984485-44984504 None:intergenic 30.0%
TTCAATGGAAAGATAAAGCA+TGG - chr1_3:44984601-44984620 Msa0120320:intron 30.0%
TCAATGGAAAGATAAAGCAT+GGG - chr1_3:44984602-44984621 Msa0120320:intron 30.0%
AAGATAAAGCATGGGATAAA+TGG - chr1_3:44984610-44984629 Msa0120320:intron 30.0%
CCGTTCATATGATATGAAAA+TGG - chr1_3:44984887-44984906 Msa0120320:intron 30.0%
TACTATAAAGCAGTATCCAA+AGG - chr1_3:44984945-44984964 Msa0120320:intron 30.0%
!! AACTATATCAAATTGGCCTT+TGG + chr1_3:44984964-44984983 None:intergenic 30.0%
TTCTTTCTCATTTGTTTCCA+AGG - chr1_3:44985067-44985086 Msa0120320:intron 30.0%
! TGAAAAGCATATTCATTTGG+TGG + chr1_3:44985101-44985120 None:intergenic 30.0%
! GAATATGCTTTTCAACTTTC+TGG - chr1_3:44985107-44985126 Msa0120320:intron 30.0%
TAGGATGTAATAGGATGATA+AGG + chr1_3:44985276-44985295 None:intergenic 30.0%
! ATGTTTTCCATGCAAGAAAA+AGG - chr1_3:44985436-44985455 Msa0120320:CDS 30.0%
GATATCTTTGGCTGAATTAT+TGG - chr1_3:44985470-44985489 Msa0120320:intron 30.0%
AGTTCCCAAATGAAATTACT+AGG - chr1_3:44985528-44985547 Msa0120320:intron 30.0%
ACAGCACAAAGTGATTAAAA+TGG + chr1_3:44985559-44985578 None:intergenic 30.0%
! TGTCTGTAATAGTATTTCTG+CGG - chr1_3:44985633-44985652 Msa0120320:intron 30.0%
TAATAATGTTCTTCGTGGAT+CGG - chr1_3:44986036-44986055 Msa0120320:intron 30.0%
! AGCAAACATTCTTTTTGTTG+TGG - chr1_3:44986167-44986186 Msa0120320:intron 30.0%
!!! TAGAGAAATAGTTGCTGTTT+TGG - chr1_3:44986212-44986231 Msa0120320:intron 30.0%
ATGGATTCATAAACAACAAC+CGG + chr1_3:44986468-44986487 None:intergenic 30.0%
AAGTATTTGGTTGGAACATA+TGG - chr1_3:44986668-44986687 Msa0120320:intron 30.0%
CTATTTAGGTGATATCTTCT+AGG - chr1_3:44986834-44986853 Msa0120320:intron 30.0%
! CTCATACACATGTTGTTTAT+TGG + chr1_3:44986883-44986902 None:intergenic 30.0%
! GAGTATTTTACCACATACAA+AGG - chr1_3:44986935-44986954 Msa0120320:intron 30.0%
! GTATTTTACCACATACAAAG+GGG - chr1_3:44986937-44986956 Msa0120320:intron 30.0%
! TATTTTACCACATACAAAGG+GGG - chr1_3:44986938-44986957 Msa0120320:intron 30.0%
!! CAGTAATTTCTAGAACCTAT+AGG + chr1_3:44987059-44987078 None:intergenic 30.0%
!! CTATAGGTTCTAGAAATTAC+TGG - chr1_3:44987057-44987076 Msa0120320:intron 30.0%
! ACTCGCAATAGGATTATTTT+TGG + chr1_3:44987097-44987116 None:intergenic 30.0%
! AAACTAATGATAGTGATGTC+AGG + chr1_3:44987199-44987218 None:intergenic 30.0%
! TATTTCCCTTTGCTATGTAA+TGG - chr1_3:44987338-44987357 Msa0120320:intron 30.0%
TCATAAGCCCATAATTTAAG+TGG + chr1_3:44987497-44987516 None:intergenic 30.0%
ACTTAAATTATGGGCTTATG+AGG - chr1_3:44987496-44987515 Msa0120320:intron 30.0%
!! TTAGTTTTCTCTCAATTCTC+TGG + chr1_3:44987688-44987707 None:intergenic 30.0%
TGAGTAAAGTGATTACAAAG+TGG - chr1_3:44987726-44987745 Msa0120320:intron 30.0%
ACCGATGATGTTAATATTGA+TGG - chr1_3:44988153-44988172 Msa0120320:CDS 30.0%
TAAAGTTACACAATGGTTTG+AGG - chr1_3:44988511-44988530 Msa0120320:five_prime_UTR 30.0%
GAGCTTAAAAGTTAAAACTG+TGG - chr1_3:44988533-44988552 Msa0120320:five_prime_UTR 30.0%
AGCTAACCAACAAATAAACG+TGG - chr1_3:44983037-44983056 Msa0120320:three_prime_UTR 35.0%
GCTAACCAACAAATAAACGT+GGG - chr1_3:44983038-44983057 Msa0120320:three_prime_UTR 35.0%
CTAACCAACAAATAAACGTG+GGG - chr1_3:44983039-44983058 Msa0120320:three_prime_UTR 35.0%
!! TTGGTGGTAATTTGTTTGGA+CGG + chr1_3:44983257-44983276 None:intergenic 35.0%
!!! GGTTTTGGTGGTAATTTGTT+TGG + chr1_3:44983261-44983280 None:intergenic 35.0%
! TTTGTTTGGGGAAATGGTTT+TGG + chr1_3:44983276-44983295 None:intergenic 35.0%
!!! GGTTTTTTTGTTTGGGGAAA+TGG + chr1_3:44983282-44983301 None:intergenic 35.0%
!! GGAACAGTTTCTTTTGTTGT+TGG + chr1_3:44983349-44983368 None:intergenic 35.0%
! AAGAAACTGTTCCTTTTCCA+AGG - chr1_3:44983356-44983375 Msa0120320:three_prime_UTR 35.0%
!! AGATGTTTCTGTTTCTGACA+TGG + chr1_3:44983493-44983512 None:intergenic 35.0%
!! TGTTGATGATGAAGTTGAAG+TGG + chr1_3:44983520-44983539 None:intergenic 35.0%
! GATCTTATAGCAAAGCGTTT+AGG + chr1_3:44983585-44983604 None:intergenic 35.0%
!! CTACTGGAGTTTTTGTTTCT+GGG - chr1_3:44983658-44983677 Msa0120320:intron 35.0%
GTGTTTGCAATAAGAAGAGA+AGG + chr1_3:44983701-44983720 None:intergenic 35.0%
TTGGGGTAGAATTAGAAACT+AGG - chr1_3:44984024-44984043 Msa0120320:intron 35.0%
CCCTTTGATCAAACAATTAC+AGG + chr1_3:44984082-44984101 None:intergenic 35.0%
AAGTGAGTGAGTAGTATGAA+TGG + chr1_3:44984211-44984230 None:intergenic 35.0%
AATGTGAAGTCATTGAGTTC+AGG - chr1_3:44984498-44984517 Msa0120320:CDS 35.0%
TGATGGTAAAGCAATTTCAG+TGG - chr1_3:44984539-44984558 Msa0120320:intron 35.0%
TTTCAGTGGCTTGATTGATT+TGG - chr1_3:44984553-44984572 Msa0120320:intron 35.0%
!!! GGTCTGTGGATTTTTTACAT+AGG - chr1_3:44984578-44984597 Msa0120320:intron 35.0%
GAAACTGTTGCTCTATACAA+AGG + chr1_3:44984726-44984745 None:intergenic 35.0%
ATGAGAAAGAATACCTGCAA+AGG + chr1_3:44985058-44985077 None:intergenic 35.0%
! ATTTGGTGGAATTTCATCCT+TGG + chr1_3:44985087-44985106 None:intergenic 35.0%
! TAGGATGATAAGGTGGTTTT+GGG + chr1_3:44985266-44985285 None:intergenic 35.0%
! ATAGGATGATAAGGTGGTTT+TGG + chr1_3:44985267-44985286 None:intergenic 35.0%
GATGTAATAGGATGATAAGG+TGG + chr1_3:44985273-44985292 None:intergenic 35.0%
!! CACAACATTGACTTAGATAG+TGG - chr1_3:44985314-44985333 Msa0120320:intron 35.0%
!! TTTGGAACCTTTTTCTTGCA+TGG + chr1_3:44985446-44985465 None:intergenic 35.0%
ATGCAAGAAAAAGGTTCCAA+AGG - chr1_3:44985445-44985464 Msa0120320:CDS 35.0%
GTTCCAAAGGAAGATATCTT+TGG - chr1_3:44985458-44985477 Msa0120320:intron 35.0%
TATTCGATCTGCAATACACT+AGG + chr1_3:44985610-44985629 None:intergenic 35.0%
TATATCTCAATAGGCTTCTC+TGG + chr1_3:44985880-44985899 None:intergenic 35.0%
CTTAATCTTCATAATGGCTG+TGG + chr1_3:44985983-44986002 None:intergenic 35.0%
CACAGCCATTATGAAGATTA+AGG - chr1_3:44985981-44986000 Msa0120320:intron 35.0%
AATAATGTTCTTCGTGGATC+GGG - chr1_3:44986037-44986056 Msa0120320:intron 35.0%
!! GGTATGGACTATTGTTTTGT+AGG - chr1_3:44986083-44986102 Msa0120320:intron 35.0%
!!! GGCTTAAATTTTGACTGTAC+AGG - chr1_3:44986188-44986207 Msa0120320:intron 35.0%
TAAAACACAGTTCCCTTACA+TGG - chr1_3:44986308-44986327 Msa0120320:intron 35.0%
GAGACAATCTTACCATGTAA+GGG + chr1_3:44986323-44986342 None:intergenic 35.0%
TTTGGGCATCTTGAAATAGA+TGG - chr1_3:44986390-44986409 Msa0120320:intron 35.0%
TTGGGCATCTTGAAATAGAT+GGG - chr1_3:44986391-44986410 Msa0120320:intron 35.0%
CTAACTCAACCCTACAAAAT+CGG - chr1_3:44986776-44986795 Msa0120320:intron 35.0%
!! TCTTACGAACCGATTTTGTA+GGG + chr1_3:44986788-44986807 None:intergenic 35.0%
!! ATCTTACGAACCGATTTTGT+AGG + chr1_3:44986789-44986808 None:intergenic 35.0%
!! CAAAATCGGTTCGTAAGATT+AGG - chr1_3:44986790-44986809 Msa0120320:intron 35.0%
GAGCATTAGTTAATCCCTAT+AGG - chr1_3:44987041-44987060 Msa0120320:intron 35.0%
AATGTCAAAACACTCGCAAT+AGG + chr1_3:44987108-44987127 None:intergenic 35.0%
ACATTCATTATGTGTTCTGC+AGG - chr1_3:44987123-44987142 Msa0120320:intron 35.0%
ATTCCTCTTACTTTATCGCT+TGG - chr1_3:44987156-44987175 Msa0120320:intron 35.0%
AATCCAAGCGATAAAGTAAG+AGG + chr1_3:44987162-44987181 None:intergenic 35.0%
TGATACAAAGTTCACCTTTC+TGG + chr1_3:44987228-44987247 None:intergenic 35.0%
!!! TTTTTGCAGTCATTGACTTG+CGG - chr1_3:44987274-44987293 Msa0120320:intron 35.0%
ACCGAAGCCACTTAAATTAT+GGG - chr1_3:44987487-44987506 Msa0120320:intron 35.0%
AAATTATGGGCTTATGAGGT+TGG - chr1_3:44987500-44987519 Msa0120320:intron 35.0%
TCATTAAGCATTAGGATGCA+TGG + chr1_3:44987541-44987560 None:intergenic 35.0%
ACTTACTTGACAAGCAAATG+TGG + chr1_3:44987891-44987910 None:intergenic 35.0%
TCTTTACAAGCTTCAAGACA+TGG - chr1_3:44988121-44988140 Msa0120320:CDS 35.0%
! TATTGATGGTTATGGTTCAC+AGG - chr1_3:44988167-44988186 Msa0120320:CDS 35.0%
AACATTTCAACACCAGTGTT+CGG + chr1_3:44988210-44988229 None:intergenic 35.0%
! TGATTTTTGTGAGGCTTATG+AGG - chr1_3:44988342-44988361 Msa0120320:five_prime_UTR 35.0%
! GATTTTTGTGAGGCTTATGA+GGG - chr1_3:44988343-44988362 Msa0120320:five_prime_UTR 35.0%
!! TCATTGTTTGTTGTCCTACA+AGG - chr1_3:44988588-44988607 Msa0120320:five_prime_UTR 35.0%
TTCAAAGGCAGTATAGTTGA+TGG + chr1_3:44988614-44988633 None:intergenic 35.0%
GTTTCCCCACGTTTATTTGT+TGG + chr1_3:44983046-44983065 None:intergenic 40.0%
!! ATCTTGTTTCTGCGATTGGA+GGG + chr1_3:44983122-44983141 None:intergenic 40.0%
!! TATCTTGTTTCTGCGATTGG+AGG + chr1_3:44983123-44983142 None:intergenic 40.0%
!! TTGGTGTTGCTTTACTGACT+TGG + chr1_3:44983179-44983198 None:intergenic 40.0%
AGGCAAAGTGGTTGATCTAT+TGG + chr1_3:44983205-44983224 None:intergenic 40.0%
!!! CAGTTTCTTTTGTTGTTGGG+AGG + chr1_3:44983345-44983364 None:intergenic 40.0%
CATGGTCATTACCTTGGAAA+AGG + chr1_3:44983370-44983389 None:intergenic 40.0%
! CTTTTCCAAGGTAATGACCA+TGG - chr1_3:44983368-44983387 Msa0120320:three_prime_UTR 40.0%
!!! TCTGGGTAGTAGTTTTGTTC+TGG + chr1_3:44983451-44983470 None:intergenic 40.0%
! TAGCAAAGCGTTTAGGTTCA+GGG + chr1_3:44983578-44983597 None:intergenic 40.0%
! ATAGCAAAGCGTTTAGGTTC+AGG + chr1_3:44983579-44983598 None:intergenic 40.0%
GACAAGACTCTTGAGATTCT+TGG - chr1_3:44983606-44983625 Msa0120320:CDS 40.0%
!! GCTACTGGAGTTTTTGTTTC+TGG - chr1_3:44983657-44983676 Msa0120320:intron 40.0%
!!! ACGCTTTTGGTTTGTGACAA+TGG - chr1_3:44983743-44983762 Msa0120320:intron 40.0%
! ATGCCTTCGATTAGAAGTGT+TGG - chr1_3:44983929-44983948 Msa0120320:intron 40.0%
GTAAAGTGAGTTAACTCGCT+TGG - chr1_3:44984237-44984256 Msa0120320:intron 40.0%
ACAGGAATTGTTATCACCTG+GGG + chr1_3:44984303-44984322 None:intergenic 40.0%
CACAGGAATTGTTATCACCT+GGG + chr1_3:44984304-44984323 None:intergenic 40.0%
ACACAGGAATTGTTATCACC+TGG + chr1_3:44984305-44984324 None:intergenic 40.0%
GGTGATAACAATTCCTGTGT+CGG - chr1_3:44984305-44984324 Msa0120320:intron 40.0%
GTGATAACAATTCCTGTGTC+GGG - chr1_3:44984306-44984325 Msa0120320:intron 40.0%
!! AGTGGCTTGATTGATTTGGT+TGG - chr1_3:44984557-44984576 Msa0120320:intron 40.0%
!! TGATTGATTTGGTTGGTCTG+TGG - chr1_3:44984564-44984583 Msa0120320:intron 40.0%
!!! CTTTTTTGTTGTGCCTTTGC+AGG - chr1_3:44985042-44985061 Msa0120320:intron 40.0%
CAGCCAAAGATATCTTCCTT+TGG + chr1_3:44985464-44985483 None:intergenic 40.0%
!! GTATTTCTGCGGTTTTAGTG+TGG - chr1_3:44985644-44985663 Msa0120320:intron 40.0%
CCTTGTTAACACTAGTAGTG+CGG - chr1_3:44985810-44985829 Msa0120320:CDS 40.0%
! GTCCATTTTGTCGAAAGGTA+TGG - chr1_3:44986067-44986086 Msa0120320:intron 40.0%
GTCCATACCTTTCGACAAAA+TGG + chr1_3:44986072-44986091 None:intergenic 40.0%
TTCTATCCTTGCCCAAGAAA+CGG - chr1_3:44986249-44986268 Msa0120320:intron 40.0%
GAAAATTTGGGCCGTTTCTT+GGG + chr1_3:44986263-44986282 None:intergenic 40.0%
CAACCTTCGCACGAAAATTT+GGG + chr1_3:44986275-44986294 None:intergenic 40.0%
ACAACCTTCGCACGAAAATT+TGG + chr1_3:44986276-44986295 None:intergenic 40.0%
GGAGACAATCTTACCATGTA+AGG + chr1_3:44986324-44986343 None:intergenic 40.0%
! AAGCAGTTTAGCTTAGTGAC+TGG + chr1_3:44986421-44986440 None:intergenic 40.0%
AATCGTTGTAAGATGCGAGA+TGG + chr1_3:44986487-44986506 None:intergenic 40.0%
TTGCTTATCACACCTTGTGA+TGG - chr1_3:44986545-44986564 Msa0120320:intron 40.0%
!! TATTAGGTTGACCCAAACAC+TGG - chr1_3:44986614-44986633 Msa0120320:intron 40.0%
ACATTGAAACGCCAGTGTTT+GGG + chr1_3:44986628-44986647 None:intergenic 40.0%
TACATTGAAACGCCAGTGTT+TGG + chr1_3:44986629-44986648 None:intergenic 40.0%
ATTATGTGTTCTGCAGGTGA+TGG - chr1_3:44987129-44987148 Msa0120320:intron 40.0%
TATGCTTGGTCGTATTACGA+AGG - chr1_3:44987303-44987322 Msa0120320:intron 40.0%
! TCCCTTTGCTATGTAATGGA+AGG - chr1_3:44987342-44987361 Msa0120320:intron 40.0%
CCCTTCCATTACATAGCAAA+GGG + chr1_3:44987346-44987365 None:intergenic 40.0%
! CCCTTTGCTATGTAATGGAA+GGG - chr1_3:44987343-44987362 Msa0120320:intron 40.0%
TCCCTTCCATTACATAGCAA+AGG + chr1_3:44987347-44987366 None:intergenic 40.0%
CATAATTTAAGTGGCTTCGG+TGG + chr1_3:44987488-44987507 None:intergenic 40.0%
CACCGAAGCCACTTAAATTA+TGG - chr1_3:44987486-44987505 Msa0120320:intron 40.0%
GCCCATAATTTAAGTGGCTT+CGG + chr1_3:44987491-44987510 None:intergenic 40.0%
! TCACGTACGATTTTGCAGAA+AGG + chr1_3:44987846-44987865 None:intergenic 40.0%
! AATCGTACGTGAAGTACTTG+TGG - chr1_3:44987854-44987873 Msa0120320:intron 40.0%
! ACGTGAAGTACTTGTGGAAT+TGG - chr1_3:44987860-44987879 Msa0120320:intron 40.0%
TCAGAAAACTGGACATTTCC+AGG - chr1_3:44988062-44988081 Msa0120320:CDS 40.0%
!!! TGGTTCACAGGTACCTTTTT+TGG - chr1_3:44988179-44988198 Msa0120320:CDS 40.0%
GTGTTCGGATCTTCCAAAAA+AGG + chr1_3:44988195-44988214 None:intergenic 40.0%
!! TTTTTGGAAGATCCGAACAC+TGG - chr1_3:44988195-44988214 Msa0120320:CDS 40.0%
TGTTATGTCTGTCTCTGTCT+TGG - chr1_3:44988383-44988402 Msa0120320:five_prime_UTR 40.0%
!! AGTATAGTTGATGGCCTTGT+AGG + chr1_3:44988605-44988624 None:intergenic 40.0%
!! GTGGTTGATCTATTGGCTCT+TGG + chr1_3:44983198-44983217 None:intergenic 45.0%
! AACGGTATTGGAAAGAGGGA+AGG + chr1_3:44983225-44983244 None:intergenic 45.0%
! CAGCAACGGTATTGGAAAGA+GGG + chr1_3:44983229-44983248 None:intergenic 45.0%
! TCAGCAACGGTATTGGAAAG+AGG + chr1_3:44983230-44983249 None:intergenic 45.0%
! TTTGGACGGTTAGTCAGCAA+CGG + chr1_3:44983243-44983262 None:intergenic 45.0%
!!! GTTTGGGGAAATGGTTTTGG+TGG + chr1_3:44983273-44983292 None:intergenic 45.0%
! TCAGGGGGTTTGAAATTTGG+AGG + chr1_3:44983561-44983580 None:intergenic 45.0%
! GGTTCAGGGGGTTTGAAATT+TGG + chr1_3:44983564-44983583 None:intergenic 45.0%
! AGCAAAGCGTTTAGGTTCAG+GGG + chr1_3:44983577-44983596 None:intergenic 45.0%
AAAGCGAAAGAGCAAGGGAA+GGG + chr1_3:44983637-44983656 None:intergenic 45.0%
GTAGCAAAGCGAAAGAGCAA+GGG + chr1_3:44983642-44983661 None:intergenic 45.0%
AGTAGCAAAGCGAAAGAGCA+AGG + chr1_3:44983643-44983662 None:intergenic 45.0%
TTGCTCTTTCGCTTTGCTAC+TGG - chr1_3:44983642-44983661 Msa0120320:intron 45.0%
! TTCTAATCGAAGGCATGTCC+CGG + chr1_3:44983925-44983944 None:intergenic 45.0%
ACGCCAACACTTCTAATCGA+AGG + chr1_3:44983935-44983954 None:intergenic 45.0%
TTGGCGTTACAGAGCATGTA+TGG - chr1_3:44983948-44983967 Msa0120320:intron 45.0%
TGGCGTTACAGAGCATGTAT+GGG - chr1_3:44983949-44983968 Msa0120320:intron 45.0%
!! AATTTGTGCATCGACTTGGC+TGG - chr1_3:44983993-44984012 Msa0120320:intron 45.0%
!! ACTTGGCTGGTTTCACTGTT+GGG - chr1_3:44984006-44984025 Msa0120320:intron 45.0%
GTGTCAAATTCAAATCCCCC+AGG - chr1_3:44984284-44984303 Msa0120320:intron 45.0%
CAGGAATTGTTATCACCTGG+GGG + chr1_3:44984302-44984321 None:intergenic 45.0%
!! ATTGGTCTTCCGCTAGTAGA+CGG - chr1_3:44984360-44984379 Msa0120320:CDS 45.0%
!! ACTGGAGAGATGATGGATTG+TGG + chr1_3:44985232-44985251 None:intergenic 45.0%
CCGCACTACTAGTGTTAACA+AGG + chr1_3:44985813-44985832 None:intergenic 45.0%
AACACTAGTAGTGCGGTTTC+AGG - chr1_3:44985817-44985836 Msa0120320:CDS 45.0%
! CAGCTGTCCATTTTGTCGAA+AGG - chr1_3:44986062-44986081 Msa0120320:intron 45.0%
CGAAAATTTGGGCCGTTTCT+TGG + chr1_3:44986264-44986283 None:intergenic 45.0%
AACGATTCCCCCTTTGTATG+TGG + chr1_3:44986948-44986967 None:intergenic 45.0%
GATGCATGGTTAGCATGTTG+TGG + chr1_3:44987527-44987546 None:intergenic 45.0%
TGGAAAGAGGGAAGGCAAAG+TGG + chr1_3:44983217-44983236 None:intergenic 50.0%
! CGGTTAGTCAGCAACGGTAT+TGG + chr1_3:44983237-44983256 None:intergenic 50.0%
TCCAAGGTAATGACCATGGC+TGG - chr1_3:44983372-44983391 Msa0120320:three_prime_UTR 50.0%
TCCAGCCATGGTCATTACCT+TGG + chr1_3:44983376-44983395 None:intergenic 50.0%
GTAATGACCATGGCTGGAAC+AGG - chr1_3:44983378-44983397 Msa0120320:three_prime_UTR 50.0%
! GGGGGTTTGAAATTTGGAGG+AGG + chr1_3:44983558-44983577 None:intergenic 50.0%
! GCAAAGCGTTTAGGTTCAGG+GGG + chr1_3:44983576-44983595 None:intergenic 50.0%
CAAAGCGAAAGAGCAAGGGA+AGG + chr1_3:44983638-44983657 None:intergenic 50.0%
TGTTAGCCGCTGACACATGT+CGG - chr1_3:44983896-44983915 Msa0120320:intron 50.0%
!! GACTTGGCTGGTTTCACTGT+TGG - chr1_3:44984005-44984024 Msa0120320:intron 50.0%
!! CTTGGCTGGTTTCACTGTTG+GGG - chr1_3:44984007-44984026 Msa0120320:intron 50.0%
TGAGTTAACTCGCTTGGACG+TGG - chr1_3:44984243-44984262 Msa0120320:intron 50.0%
GAGTTAACTCGCTTGGACGT+GGG - chr1_3:44984244-44984263 Msa0120320:intron 50.0%
ATTGAAGCCAGAGCAAAGCC+CGG + chr1_3:44984342-44984361 None:intergenic 50.0%
! GGCTTTGCTCTGGCTTCAAT+TGG - chr1_3:44984342-44984361 Msa0120320:intron 50.0%
CCAAGGATCGACTAATCCAG+GGG + chr1_3:44984396-44984415 None:intergenic 50.0%
CCCAAGGATCGACTAATCCA+GGG + chr1_3:44984397-44984416 None:intergenic 50.0%
!! CCCTGGATTAGTCGATCCTT+GGG - chr1_3:44984394-44984413 Msa0120320:intron 50.0%
GAAACTTGGTATCTGGCCCA+AGG + chr1_3:44984413-44984432 None:intergenic 50.0%
!! TTTTGGGAAGTCGCAAGGAC+TGG + chr1_3:44985250-44985269 None:intergenic 50.0%
TCGTGCGAAGGTTGTTGAGA+TGG - chr1_3:44986281-44986300 Msa0120320:intron 50.0%
CGTGCGAAGGTTGTTGAGAT+GGG - chr1_3:44986282-44986301 Msa0120320:intron 50.0%
! ACTTGCGGTCTTGCTATGCT+TGG - chr1_3:44987289-44987308 Msa0120320:intron 50.0%
CAGAGTTCCTGTTCCAGCCA+TGG + chr1_3:44983388-44983407 None:intergenic 55.0%
! GTGGGAGTGTGCTCCTCTTT+AGG - chr1_3:44984262-44984281 Msa0120320:intron 55.0%
GTCTTCCGCTAGTAGACGGT+GGG - chr1_3:44984364-44984383 Msa0120320:CDS 55.0%
CCAATCCCACCGTCTACTAG+CGG + chr1_3:44984372-44984391 None:intergenic 55.0%
!! CCCCTGGATTAGTCGATCCT+TGG - chr1_3:44984393-44984412 Msa0120320:intron 55.0%
GCCCAAGGATCGACTAATCC+AGG + chr1_3:44984398-44984417 None:intergenic 55.0%
CGCAAGGACTGGAGAGATGA+TGG + chr1_3:44985239-44985258 None:intergenic 55.0%
!!! GGTGGTTTTGGGAAGTCGCA+AGG + chr1_3:44985255-44985274 None:intergenic 55.0%
TTTGGGCCGTTTCTTGGGCA+AGG + chr1_3:44986258-44986277 None:intergenic 55.0%
! CGGCCCAAATTTTCGTGCGA+AGG - chr1_3:44986269-44986288 Msa0120320:intron 55.0%
GCGAAGGTTGTTGAGATGGG+TGG - chr1_3:44986285-44986304 Msa0120320:intron 55.0%
CGGTGTCCGACATGTGTCAG+CGG + chr1_3:44983905-44983924 None:intergenic 60.0%
CGCTGACACATGTCGGACAC+CGG - chr1_3:44983903-44983922 Msa0120320:intron 60.0%
GCTGACACATGTCGGACACC+GGG - chr1_3:44983904-44983923 Msa0120320:intron 60.0%
TGTGTCGGGCCAGTCCATAC+CGG - chr1_3:44984320-44984339 Msa0120320:intron 60.0%
GAGCAAAGCCCGGTATGGAC+TGG + chr1_3:44984332-44984351 None:intergenic 60.0%
GTCCATACCGGGCTTTGCTC+TGG - chr1_3:44984332-44984351 Msa0120320:intron 60.0%
AGCCAGAGCAAAGCCCGGTA+TGG + chr1_3:44984337-44984356 None:intergenic 60.0%
GGTCTTCCGCTAGTAGACGG+TGG - chr1_3:44984363-44984382 Msa0120320:CDS 60.0%
CCGCTAGTAGACGGTGGGAT+TGG - chr1_3:44984369-44984388 Msa0120320:CDS 60.0%
GGCTTCGGTGGTAACTTCGC+TGG + chr1_3:44987476-44987495 None:intergenic 60.0%
!! GGTATGGACTGGCCCGACAC+AGG + chr1_3:44984321-44984340 None:intergenic 65.0%
GTGTCGGGCCAGTCCATACC+GGG - chr1_3:44984321-44984340 Msa0120320:intron 65.0%
!! AGACGGTGGGATTGGTCCCC+TGG - chr1_3:44984377-44984396 Msa0120320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44983032 44988647 44983032 ID=Msa0120320;Name=Msa0120320
chr1_3 mRNA 44983032 44988647 44983032 ID=Msa0120320-mRNA-1;Parent=Msa0120320;Name=Msa0120320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=349|1|1|1|1|1|12|369|335
chr1_3 exon 44983032 44983490 44983032 ID=Msa0120320-mRNA-1:exon:13496;Parent=Msa0120320-mRNA-1
chr1_3 exon 44983596 44983653 44983596 ID=Msa0120320-mRNA-1:exon:13495;Parent=Msa0120320-mRNA-1
chr1_3 exon 44983775 44983842 44983775 ID=Msa0120320-mRNA-1:exon:13494;Parent=Msa0120320-mRNA-1
chr1_3 exon 44984162 44984221 44984162 ID=Msa0120320-mRNA-1:exon:13493;Parent=Msa0120320-mRNA-1
chr1_3 exon 44984355 44984396 44984355 ID=Msa0120320-mRNA-1:exon:13492;Parent=Msa0120320-mRNA-1
chr1_3 exon 44984491 44984534 44984491 ID=Msa0120320-mRNA-1:exon:13491;Parent=Msa0120320-mRNA-1
chr1_3 exon 44984990 44985059 44984990 ID=Msa0120320-mRNA-1:exon:13490;Parent=Msa0120320-mRNA-1
chr1_3 exon 44985350 44985469 44985350 ID=Msa0120320-mRNA-1:exon:13489;Parent=Msa0120320-mRNA-1
chr1_3 exon 44985596 44985614 44985596 ID=Msa0120320-mRNA-1:exon:13488;Parent=Msa0120320-mRNA-1
chr1_3 exon 44985768 44985840 44985768 ID=Msa0120320-mRNA-1:exon:13487;Parent=Msa0120320-mRNA-1
chr1_3 exon 44986551 44986615 44986551 ID=Msa0120320-mRNA-1:exon:13486;Parent=Msa0120320-mRNA-1
chr1_3 exon 44988000 44988647 44988000 ID=Msa0120320-mRNA-1:exon:13485;Parent=Msa0120320-mRNA-1
chr1_3 five_prime_UTR 44988299 44988647 44988299 ID=Msa0120320-mRNA-1:five_prime_utr;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44988000 44988298 44988000 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44986551 44986615 44986551 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44985768 44985840 44985768 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44985596 44985614 44985596 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44985350 44985469 44985350 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44984990 44985059 44984990 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44984491 44984534 44984491 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44984355 44984396 44984355 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44984162 44984221 44984162 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44983775 44983842 44983775 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44983596 44983653 44983596 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 CDS 44983401 44983490 44983401 ID=Msa0120320-mRNA-1:cds;Parent=Msa0120320-mRNA-1
chr1_3 three_prime_UTR 44983032 44983400 44983032 ID=Msa0120320-mRNA-1:three_prime_utr;Parent=Msa0120320-mRNA-1
Gene Sequence

>Msa0120320

ATGACCATGGCTGGAACAGGAACTCTGAGTTTTTCTCAATTCTCAGTTCATAGGCCTGTTTCATTTTCCAGAACAAAACTACTACCCAGAAACAGAATTTGCATTAGAGCCATGTCAGAAACAGAAACATCTTCTTCCACTTCAACTTCATCATCAACATCAGTTTCAATTACTCCTCCTCCAAATTTCAAACCCCCTGAACCTAAACGCTTTGCTATAAGATCTGACAAGACTCTTGAGATTCTTGGAGCTTCCCTTCCCTTGCTCTTTCGCTTTGCTACTGGAGTTTTTGTTTCTGGGTATTCTTTCTCATTTGTTTCCAAGGATGAAATTCCACCAAATGAATATGCTTTTCAACTTTCTGGCATTACAGTAAAAGAAACATCAAAGATAGGCGCTCGACCAGAGAAGCCTATTGAGATATATGAATTTGAAAGCTGTCCATTTTGTCGAAAGGTTAGAGAAATAGTTGCTGTTTTGGACCTTGATATTCTTTTCTATCCTTGCCCAAGAAACGGCCCAAATTTTCGTGCGAAGGTTGTTGAGATGGGTGGTAAAACACAGTTCCCTTACATGGTTGACCCAAACACTGGCGTTTCAATGTATGAATCAGACGAAATAATTAAGTATTTGGTTGGAACATATGGTGATGGAAACATTCCTCTTACTTTATCGCTTGGATTTTTAACGTCATTGACTTGCGGTCTTGCTATGCTTGGTCGTATTACGAAGGGAACATCATATACTCCAGCGAAGTTACCACCGAAGCCACTTAAATTATGGGCTTATGAGGGATCTCCTTTCTGCAAAATCGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACATTTGCTTGTCAATTGTGCTAGGGGTAGCCCAAAACGAAATATTCTATATCAGAAAACTGGACATTTCCAGGTACCTTTTTTGGAAGATCCGAACACTGGTGTTGAAATGTTTGAGAGTGCAGAAATTATAGAGTACATTAGAGCAACTTACACTCTTTAG

Protein sequence

>Msa0120320

MTMAGTGTLSFSQFSVHRPVSFSRTKLLPRNRICIRAMSETETSSSTSTSSSTSVSITPPPNFKPPEPKRFAIRSDKTLEILGASLPLLFRFATGVFVSGYSFSFVSKDEIPPNEYAFQLSGITVKETSKIGARPEKPIEIYEFESCPFCRKVREIVAVLDLDILFYPCPRNGPNFRAKVVEMGGKTQFPYMVDPNTGVSMYESDEIIKYLVGTYGDGNIPLTLSLGFLTSLTCGLAMLGRITKGTSYTPAKLPPKPLKLWAYEGSPFCKIVREVLVELELPHLLVNCARGSPKRNILYQKTGHFQVPFLEDPNTGVEMFESAEIIEYIRATYTL*