AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367590 MtrunA17_Chr3g0109101 93.220 295 19 1 1 294 1 295 0.0 544
Msa0367590 MtrunA17_Chr3g0109111 89.441 322 33 1 7 327 79 400 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367590 AT3G02690.1 72.555 317 83 2 7 322 99 412 5.82e-154 438

Find 100 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.034711 3_1:-63287495 Msa0367590:CDS
TAATATCGCCGTTCTTCTTC+TGG 0.156426 3_1:-63287688 Msa0367590:CDS
TAAAGATTGTGACTTGTTTA+TGG 0.182218 3_1:-63284670 Msa0367590:three_prime_UTR
ATACTTGCGGCTTTGCTATT+TGG 0.192263 3_1:-63286765 Msa0367590:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.226279 3_1:-63284935 Msa0367590:three_prime_UTR
CAACGATAGTTGAAGGGTTA+TGG 0.279629 3_1:-63287724 Msa0367590:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.294962 3_1:-63287494 Msa0367590:CDS
TCTCACCTGTACAGCTTGTT+GGG 0.295751 3_1:-63285079 Msa0367590:CDS
GGAGAAAACTTCAGCTGGTT+TGG 0.296313 3_1:-63287453 Msa0367590:CDS
AGCATCGACGAGAGCAAATA+TGG 0.297028 3_1:+63287508 None:intergenic
TTCCTTCTGGCTTCCATGCT+TGG 0.297169 3_1:-63287541 Msa0367590:CDS
TATTTCAGGTTTCTGTATCT+TGG 0.302197 3_1:-63285110 Msa0367590:intron
AGAGGAAGGGCGTTTCCTTC+TGG 0.304509 3_1:-63287554 Msa0367590:CDS
ATGGGAGCAACTTCTCACTA+TGG 0.345755 3_1:-63286379 Msa0367590:CDS
CATCTTCTTCTGCACTTAAG+AGG 0.346078 3_1:+63287777 None:intergenic
AATATCGCCGTTCTTCTTCT+GGG 0.346517 3_1:-63287687 Msa0367590:CDS
GGCGAGTCCATTGGAATTGT+TGG 0.358289 3_1:-63286744 Msa0367590:CDS
TTCTCACCTGTACAGCTTGT+TGG 0.369065 3_1:-63285080 Msa0367590:CDS
AGTTGCTCCCATCAATTGAT+AGG 0.369335 3_1:+63286390 None:intergenic
TTCATTATGTATCATAAATC+TGG 0.372794 3_1:+63284588 None:intergenic
GAGAAAACTTCAGCTGGTTT+GGG 0.378742 3_1:-63287452 Msa0367590:CDS
AATAATTGCCATGAACTCAT+TGG 0.380728 3_1:-63284953 Msa0367590:three_prime_UTR
CTTCTTCTGGGGCACTTCCA+TGG 0.396917 3_1:-63287675 Msa0367590:CDS
TAGCATTCCCAATGAGTTCA+TGG 0.397439 3_1:+63284945 None:intergenic
GGGCTTGTACTTGGTGTCAT+AGG 0.398978 3_1:-63286714 Msa0367590:CDS
AACGATAGTTGAAGGGTTAT+GGG 0.412873 3_1:-63287723 Msa0367590:CDS
GGAGCTGCCGGGCTTGTACT+TGG 0.418936 3_1:-63286723 Msa0367590:CDS
ATTGGAATTGTTGGAGCTGC+CGG 0.419713 3_1:-63286735 Msa0367590:CDS
TTGCTATTTGGCGAGTCCAT+TGG 0.426917 3_1:-63286753 Msa0367590:CDS
AACAACGACCCTGCTGTAAG+TGG 0.430978 3_1:-63285983 Msa0367590:CDS
TGGCTTATCCATGCTTTATG+TGG 0.436416 3_1:+63287811 None:intergenic
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3_1:+63286269 None:intergenic
TTACCTTCCCTATCAATTGA+TGG 0.445495 3_1:-63286398 Msa0367590:CDS
GTACAGTTCAACTGATGTAT+TGG 0.457095 3_1:-63285948 Msa0367590:CDS
TTACAGCATATGGTTATTGG+TGG 0.460064 3_1:-63286034 Msa0367590:intron
TCTGATCCTATCATGGCAAC+TGG 0.460438 3_1:-63286275 Msa0367590:CDS
ATCATAAATCTGGTACTAAC+CGG 0.461355 3_1:+63284598 None:intergenic
CATGATAGGATCAGAGTACT+TGG 0.465171 3_1:+63286283 None:intergenic
ATAATTGCCATGAACTCATT+GGG 0.465849 3_1:-63284952 Msa0367590:three_prime_UTR
TCGTTTCGTCTCATTCCTGC+CGG 0.471862 3_1:-63287605 Msa0367590:CDS
TTGGAATTGTTGGAGCTGCC+GGG 0.484733 3_1:-63286734 Msa0367590:CDS
AACTTCTCACTATGGGGAAG+TGG 0.486637 3_1:-63286371 Msa0367590:CDS
TTTGGAAGCGCTGTTAGCTA+TGG 0.497044 3_1:-63285905 Msa0367590:CDS
TCATTGCCAACGATAGTTGA+AGG 0.500413 3_1:-63287731 Msa0367590:CDS
CGTTTCGTCTCATTCCTGCC+GGG 0.504091 3_1:-63287604 Msa0367590:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3_1:-63286282 Msa0367590:CDS
TTAAGACTCCCACTTACAGC+AGG 0.509878 3_1:+63285974 None:intergenic
GGGTTGGAGAAAACTTCAGC+TGG 0.512915 3_1:-63287458 Msa0367590:CDS
AAAGAAGTGATTCCGAAATA+CGG 0.514005 3_1:-63287644 Msa0367590:CDS
TATGGGGAAGTGGGGAGATG+TGG 0.515222 3_1:-63286361 Msa0367590:CDS
TGGGAGCAACTTCTCACTAT+GGG 0.515852 3_1:-63286378 Msa0367590:CDS
CCGGCCCCAACAAGCTGTAC+AGG 0.515978 3_1:+63285074 None:intergenic
CCTGTACAGCTTGTTGGGGC+CGG 0.516962 3_1:-63285074 Msa0367590:CDS
TACCTTCCCTATCAATTGAT+GGG 0.518568 3_1:-63286397 Msa0367590:CDS
ATCCTATCATGGCAACTGGA+TGG 0.520007 3_1:-63286271 Msa0367590:CDS
AAATGTAAGTGAACTGAGCT+TGG 0.524209 3_1:+63285515 None:intergenic
TCCTATCATGGCAACTGGAT+GGG 0.527496 3_1:-63286270 Msa0367590:intron
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3_1:-63286310 Msa0367590:CDS
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3_1:-63286309 Msa0367590:CDS
AAAAGCAACAAGAAGGAACC+CGG 0.541215 3_1:+63287586 None:intergenic
ACTTCTCACTATGGGGAAGT+GGG 0.542735 3_1:-63286370 Msa0367590:CDS
TATTGCAGCTACAGTAATAC+CGG 0.543443 3_1:+63285055 None:intergenic
ATATCGCCGTTCTTCTTCTG+GGG 0.550209 3_1:-63287686 Msa0367590:CDS
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3_1:-63286336 Msa0367590:CDS
TTTGACAGTGGCTATACTTG+CGG 0.561743 3_1:-63286778 Msa0367590:CDS
CTCTTAAGTGCAGAAGAAGA+TGG 0.563214 3_1:-63287776 Msa0367590:CDS
TACTGTAGCTGCAATATACA+TGG 0.565537 3_1:-63285048 Msa0367590:CDS
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3_1:-63286313 Msa0367590:CDS
GTTGCTCCCATCAATTGATA+GGG 0.571292 3_1:+63286391 None:intergenic
CATAACCCTTCAACTATCGT+TGG 0.574957 3_1:+63287725 None:intergenic
GGCAGCTCCAACAATTCCAA+TGG 0.578419 3_1:+63286737 None:intergenic
GCAAGTATAGCCACTGTCAA+AGG 0.578902 3_1:+63286780 None:intergenic
ACAAATGCAATATACATCTC+CGG 0.579853 3_1:-63284617 Msa0367590:three_prime_UTR
CTCATGAACCACATAAAGCA+TGG 0.581441 3_1:-63287819 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3_1:-63286318 Msa0367590:CDS
GCAACAAGAAGGAACCCGGC+AGG 0.583290 3_1:+63287590 None:intergenic
CATTGCCAACGATAGTTGAA+GGG 0.584619 3_1:-63287730 Msa0367590:CDS
GACGAGAGCAAATATGGCGA+TGG 0.586449 3_1:+63287514 None:intergenic
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3_1:-63286329 Msa0367590:CDS
AACCAGCAAAAGCAACAAGA+AGG 0.591823 3_1:+63287579 None:intergenic
TGATTCACAACCTTTGACAG+TGG 0.592362 3_1:-63286790 Msa0367590:CDS
AACAAGCTGTACAGGTGAGA+AGG 0.593339 3_1:+63285082 None:intergenic
TATGACACCAAGTACAAGCC+CGG 0.598392 3_1:+63286716 None:intergenic
CTCCCATCAATTGATAGGGA+AGG 0.603069 3_1:+63286395 None:intergenic
CTCACCTGTACAGCTTGTTG+GGG 0.603980 3_1:-63285078 Msa0367590:CDS
CACTTCTTTCATCGCCACCA+TGG 0.610773 3_1:+63287658 None:intergenic
AGCCAAGCATGGAAGCCAGA+AGG 0.612271 3_1:+63287539 None:intergenic
TGGCGATGGAGAGCCAAGCA+TGG 0.615881 3_1:+63287528 None:intergenic
TAAGAATCGCTAATGCCACA+AGG 0.616917 3_1:+63286005 None:intergenic
GAAGTGCCCCAGAAGAAGAA+CGG 0.628202 3_1:+63287680 None:intergenic
CTTCTGGGGCACTTCCATGG+TGG 0.634864 3_1:-63287672 Msa0367590:CDS
AAGAATCGCTAATGCCACAA+GGG 0.636088 3_1:+63286006 None:intergenic
ATAGTTGAAGGGTTATGGGA+AGG 0.643808 3_1:-63287719 Msa0367590:CDS
ACAACGACCCTGCTGTAAGT+GGG 0.654735 3_1:-63285982 Msa0367590:CDS
AGAATCGCTAATGCCACAAG+GGG 0.656521 3_1:+63286007 None:intergenic
TAAGACTCCCACTTACAGCA+GGG 0.658809 3_1:+63285975 None:intergenic
CATAGGACTTGTGTTACTCG+AGG 0.662221 3_1:-63286697 Msa0367590:intron
CTTCTCACTATGGGGAAGTG+GGG 0.663161 3_1:-63286369 Msa0367590:CDS
GGGAGCAACTTCTCACTATG+GGG 0.688783 3_1:-63286377 Msa0367590:CDS
GAATCGCTAATGCCACAAGG+GGG 0.752839 3_1:+63286008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATTCTATTATTATTGTT+TGG - chr3_1:63285037-63285056 Msa0367590:CDS 15.0%
!! CTATTCTATTATTATTGTTT+GGG - chr3_1:63285038-63285057 Msa0367590:CDS 15.0%
!!! ACTTTTCTTTTTCTTTTAAA+CGG - chr3_1:63285300-63285319 Msa0367590:intron 15.0%
!! TAATATGACATATTCTTTAT+GGG + chr3_1:63286823-63286842 None:intergenic 15.0%
!! ACAATTATAATTGTAAAAGA+TGG + chr3_1:63287090-63287109 None:intergenic 15.0%
!! CTAATACAAAAAAAATTCTA+TGG + chr3_1:63287672-63287691 None:intergenic 15.0%
!! GTAGTAATAATGACTATATT+CGG - chr3_1:63285223-63285242 Msa0367590:intron 20.0%
!!! CTTTTCTTTTTCTTTTAAAC+GGG - chr3_1:63285301-63285320 Msa0367590:intron 20.0%
!!! ATTTTATAGAGTAATTTCAC+GGG + chr3_1:63285462-63285481 None:intergenic 20.0%
!!! CATTTTATAGAGTAATTTCA+CGG + chr3_1:63285463-63285482 None:intergenic 20.0%
!! AAAAGTTGTTGAGTTAAATT+TGG - chr3_1:63285520-63285539 Msa0367590:CDS 20.0%
!! TTTGATTAAGTTTAACCTAA+AGG - chr3_1:63285733-63285752 Msa0367590:intron 20.0%
!! AAAAGGATTATGCATATAAT+TGG - chr3_1:63285805-63285824 Msa0367590:intron 20.0%
!! ATATAATTGGAAGGATATTA+AGG - chr3_1:63285818-63285837 Msa0367590:intron 20.0%
!! TCAAAATTACAAAATCAACT+CGG + chr3_1:63285900-63285919 None:intergenic 20.0%
!!! TAGTATATAATAGAAGGTAT+TGG + chr3_1:63285947-63285966 None:intergenic 20.0%
!! ACTGAATAGTATATAATAGA+AGG + chr3_1:63285953-63285972 None:intergenic 20.0%
!!! TTTTTGCGAAATAAATCTAA+TGG - chr3_1:63286247-63286266 Msa0367590:intron 20.0%
!! CTAATGGTTTAAAAAAAAAG+AGG - chr3_1:63286263-63286282 Msa0367590:intron 20.0%
!! GTTTAAAAAAAAAGAGGAAA+GGG - chr3_1:63286269-63286288 Msa0367590:intron 20.0%
!! AAATCTTCAAGTATACAAAA+TGG + chr3_1:63286766-63286785 None:intergenic 20.0%
!! CTAATATGACATATTCTTTA+TGG + chr3_1:63286824-63286843 None:intergenic 20.0%
!!! GAAGTTTCTTTTTGTTTTTT+AGG - chr3_1:63286974-63286993 Msa0367590:intron 20.0%
!!! TTTTGATTAGTTGTTATATC+AGG - chr3_1:63287560-63287579 Msa0367590:CDS 20.0%
! CTTATTTGAGGATATATACA+AGG + chr3_1:63285077-63285096 None:intergenic 25.0%
! ATATCCTCAAATAAGACTAT+AGG - chr3_1:63285082-63285101 Msa0367590:CDS 25.0%
!!! ATTGATATTGCTGTTTTGTT+TGG - chr3_1:63285349-63285368 Msa0367590:intron 25.0%
!!! TTGATATTGCTGTTTTGTTT+GGG - chr3_1:63285350-63285369 Msa0367590:intron 25.0%
! AGGATATTAAGGATATGTTT+CGG - chr3_1:63285829-63285848 Msa0367590:intron 25.0%
!!! TATAATAGAAGGTATTGGTT+AGG + chr3_1:63285942-63285961 None:intergenic 25.0%
! TAGTGGAATGATGATTATAT+AGG - chr3_1:63286203-63286222 Msa0367590:intron 25.0%
! GGTTTAAAAAAAAAGAGGAA+AGG - chr3_1:63286268-63286287 Msa0367590:intron 25.0%
!! CAATAATACTGATTACAATG+TGG + chr3_1:63286731-63286750 None:intergenic 25.0%
!!! ATATTCTTTATGGGTTGATA+TGG + chr3_1:63286814-63286833 None:intergenic 25.0%
!!! TTGTTTTTGTGATGTATTAC+AGG - chr3_1:63286852-63286871 Msa0367590:intron 25.0%
!!! ATGTTAATTTGCTAGAAGAA+AGG + chr3_1:63287202-63287221 None:intergenic 25.0%
!! CATGTTTATGTTTCTTTTTG+AGG - chr3_1:63287238-63287257 Msa0367590:intron 25.0%
!!! TTCATGGCAATTATTTTGTT+GGG + chr3_1:63287440-63287459 None:intergenic 25.0%
!! AAACAATTTTCCCTTGTATA+AGG + chr3_1:63287649-63287668 None:intergenic 25.0%
!!! TAAAGATTGTGACTTGTTTA+TGG - chr3_1:63287728-63287747 Msa0367590:CDS 25.0%
AAAGAAGTGATTCCGAAATA+CGG - chr3_1:63284754-63284773 Msa0367590:intron 30.0%
ACAAAAAAAGGACCGTATTT+CGG + chr3_1:63284769-63284788 None:intergenic 30.0%
CGAAACGAAGAAACAAAAAA+AGG + chr3_1:63284781-63284800 None:intergenic 30.0%
!! TTCACCTATAGTCTTATTTG+AGG + chr3_1:63285089-63285108 None:intergenic 30.0%
CATACAATGTGCATTAGATA+AGG + chr3_1:63285420-63285439 None:intergenic 30.0%
CTTATCTAATGCACATTGTA+TGG - chr3_1:63285418-63285437 Msa0367590:intron 30.0%
TATTGATAGAACTGGACTAA+AGG - chr3_1:63285497-63285516 Msa0367590:CDS 30.0%
GGATTATGCATATAATTGGA+AGG - chr3_1:63285809-63285828 Msa0367590:intron 30.0%
TTGAGATGTACAATTTCTCT+TGG - chr3_1:63285916-63285935 Msa0367590:CDS 30.0%
TGTTTGTAAACTGAAAGTAG+TGG - chr3_1:63286186-63286205 Msa0367590:intron 30.0%
TAAGAACTTTGTAGAAGCTT+TGG - chr3_1:63286315-63286334 Msa0367590:CDS 30.0%
CCATATGCTGTAAAAGAAAT+AGG + chr3_1:63286357-63286376 None:intergenic 30.0%
!! CCTATTTCTTTTACAGCATA+TGG - chr3_1:63286354-63286373 Msa0367590:CDS 30.0%
! CTTTTACAGCATATGGTTAT+TGG - chr3_1:63286361-63286380 Msa0367590:CDS 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr3_1:63286520-63286539 Msa0367590:intron 30.0%
CTTTAAATGCAAAGTCATTC+AGG - chr3_1:63287053-63287072 Msa0367590:intron 30.0%
! ACGAAAAGTTATGATTTTGC+AGG + chr3_1:63287163-63287182 None:intergenic 30.0%
AAGAAAGGCTAGTGATAAAA+AGG + chr3_1:63287187-63287206 None:intergenic 30.0%
! GACCTTTGTATACACATTTT+TGG - chr3_1:63287260-63287279 Msa0367590:intron 30.0%
AGCCAAAAATGTGTATACAA+AGG + chr3_1:63287265-63287284 None:intergenic 30.0%
!!! TTGTATACACATTTTTGGCT+TGG - chr3_1:63287265-63287284 Msa0367590:intron 30.0%
!! TATTTCAGGTTTCTGTATCT+TGG - chr3_1:63287288-63287307 Msa0367590:intron 30.0%
! TTACATAATCTGTTTTCTGC+TGG - chr3_1:63287400-63287419 Msa0367590:intron 30.0%
!! GTTCATGGCAATTATTTTGT+TGG + chr3_1:63287441-63287460 None:intergenic 30.0%
AATAATTGCCATGAACTCAT+TGG - chr3_1:63287445-63287464 Msa0367590:intron 30.0%
ATAATTGCCATGAACTCATT+GGG - chr3_1:63287446-63287465 Msa0367590:intron 30.0%
ATGAACACAATCCTTATACA+AGG - chr3_1:63287635-63287654 Msa0367590:CDS 30.0%
TGAACACAATCCTTATACAA+GGG - chr3_1:63287636-63287655 Msa0367590:CDS 30.0%
! GATGATTTTACTGTTACACT+AGG - chr3_1:63287691-63287710 Msa0367590:CDS 30.0%
ACAAATGCAATATACATCTC+CGG - chr3_1:63287781-63287800 Msa0367590:CDS 30.0%
ATCATAAATCTGGTACTAAC+CGG + chr3_1:63287803-63287822 None:intergenic 30.0%
AACGATAGTTGAAGGGTTAT+GGG - chr3_1:63284675-63284694 Msa0367590:three_prime_UTR 35.0%
GTGTGTCATATTGATAGAAC+TGG - chr3_1:63285489-63285508 Msa0367590:CDS 35.0%
GACTATCTAGTGTGGATATA+TGG - chr3_1:63285574-63285593 Msa0367590:intron 35.0%
AGAACTAAGTCACTTCCTTT+AGG + chr3_1:63285751-63285770 None:intergenic 35.0%
!! TCCTTTTGACTGCTAACTTT+GGG + chr3_1:63285792-63285811 None:intergenic 35.0%
!! ATCCTTTTGACTGCTAACTT+TGG + chr3_1:63285793-63285812 None:intergenic 35.0%
TTACCTTCCCTATCAATTGA+TGG - chr3_1:63286000-63286019 Msa0367590:CDS 35.0%
TACCTTCCCTATCAATTGAT+GGG - chr3_1:63286001-63286020 Msa0367590:CDS 35.0%
TTACAGCATATGGTTATTGG+TGG - chr3_1:63286364-63286383 Msa0367590:CDS 35.0%
GTACAGTTCAACTGATGTAT+TGG - chr3_1:63286450-63286469 Msa0367590:intron 35.0%
TTCCAAAAATGGACATGTAG+AGG + chr3_1:63286480-63286499 None:intergenic 35.0%
!! AGTGCCACTTTAATCCAAAA+TGG - chr3_1:63286695-63286714 Msa0367590:intron 35.0%
! TGCACCATTTTGGATTAAAG+TGG + chr3_1:63286702-63286721 None:intergenic 35.0%
AAATGTAAGTGAACTGAGCT+TGG + chr3_1:63286886-63286905 None:intergenic 35.0%
TGCAACTCTTTACCATTGTT+AGG + chr3_1:63286947-63286966 None:intergenic 35.0%
TAACAATGGTAAAGAGTTGC+AGG - chr3_1:63286946-63286965 Msa0367590:intron 35.0%
AAAATCAGAAAGACAGCTGA+TGG - chr3_1:63287017-63287036 Msa0367590:intron 35.0%
!!! CATTTTTGGCTTGGTATTTC+AGG - chr3_1:63287274-63287293 Msa0367590:intron 35.0%
TATTGCAGCTACAGTAATAC+CGG + chr3_1:63287346-63287365 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - chr3_1:63287350-63287369 Msa0367590:intron 35.0%
!!! CTTAAGAGGCACTCTTTTAC+TGG + chr3_1:63284610-63284629 None:intergenic 40.0%
CATCTTCTTCTGCACTTAAG+AGG + chr3_1:63284624-63284643 None:intergenic 40.0%
CTCTTAAGTGCAGAAGAAGA+TGG - chr3_1:63284622-63284641 Msa0367590:three_prime_UTR 40.0%
TCATTGCCAACGATAGTTGA+AGG - chr3_1:63284667-63284686 Msa0367590:three_prime_UTR 40.0%
CATTGCCAACGATAGTTGAA+GGG - chr3_1:63284668-63284687 Msa0367590:three_prime_UTR 40.0%
CATAACCCTTCAACTATCGT+TGG + chr3_1:63284676-63284695 None:intergenic 40.0%
CAACGATAGTTGAAGGGTTA+TGG - chr3_1:63284674-63284693 Msa0367590:three_prime_UTR 40.0%
ATAGTTGAAGGGTTATGGGA+AGG - chr3_1:63284679-63284698 Msa0367590:three_prime_UTR 40.0%
TAATATCGCCGTTCTTCTTC+TGG - chr3_1:63284710-63284729 Msa0367590:intron 40.0%
AATATCGCCGTTCTTCTTCT+GGG - chr3_1:63284711-63284730 Msa0367590:intron 40.0%
AAAAGCAACAAGAAGGAACC+CGG + chr3_1:63284815-63284834 None:intergenic 40.0%
!!! TTCCTTCTTGTTGCTTTTGC+TGG - chr3_1:63284817-63284836 Msa0367590:three_prime_UTR 40.0%
AACCAGCAAAAGCAACAAGA+AGG + chr3_1:63284822-63284841 None:intergenic 40.0%
!!! TTTTGCTGGTTCTAGAGGAA+GGG - chr3_1:63284831-63284850 Msa0367590:three_prime_UTR 40.0%
! GAGAAAACTTCAGCTGGTTT+GGG - chr3_1:63284946-63284965 Msa0367590:three_prime_UTR 40.0%
CTTGCTTTGACTATCTAGTG+TGG - chr3_1:63285566-63285585 Msa0367590:intron 40.0%
ATCTAGTGTGGATATATGGC+AGG - chr3_1:63285578-63285597 Msa0367590:intron 40.0%
TGATTCACAACCTTTGACAG+TGG - chr3_1:63285608-63285627 Msa0367590:intron 40.0%
TTTGACAGTGGCTATACTTG+CGG - chr3_1:63285620-63285639 Msa0367590:intron 40.0%
!! ATACTTGCGGCTTTGCTATT+TGG - chr3_1:63285633-63285652 Msa0367590:intron 40.0%
AACTTTGGGCTGTGCATAAA+GGG + chr3_1:63285778-63285797 None:intergenic 40.0%
TAACTTTGGGCTGTGCATAA+AGG + chr3_1:63285779-63285798 None:intergenic 40.0%
TATTTCTTGGTTGTGCACAC+TGG + chr3_1:63285872-63285891 None:intergenic 40.0%
CAACTCGGCAATGTATTTCT+TGG + chr3_1:63285885-63285904 None:intergenic 40.0%
ATTCAGTAATGCAGCACTAC+TGG - chr3_1:63285966-63285985 Msa0367590:CDS 40.0%
GTTGCTCCCATCAATTGATA+GGG + chr3_1:63286010-63286029 None:intergenic 40.0%
AGTTGCTCCCATCAATTGAT+AGG + chr3_1:63286011-63286030 None:intergenic 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr3_1:63286118-63286137 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr3_1:63286116-63286135 Msa0367590:intron 40.0%
AAGAATCGCTAATGCCACAA+GGG + chr3_1:63286395-63286414 None:intergenic 40.0%
TAAGAATCGCTAATGCCACA+AGG + chr3_1:63286396-63286415 None:intergenic 40.0%
! CTCCTCTACATGTCCATTTT+TGG - chr3_1:63286475-63286494 Msa0367590:intron 40.0%
ATTTGACCTTGTAACCTCAG+TGG - chr3_1:63286629-63286648 Msa0367590:intron 40.0%
GATTTAAACTACGTCCACTG+AGG + chr3_1:63286646-63286665 None:intergenic 40.0%
GACGTAGTTTAAATCCCCTT+CGG - chr3_1:63286651-63286670 Msa0367590:intron 40.0%
ACGTAGTTTAAATCCCCTTC+GGG - chr3_1:63286652-63286671 Msa0367590:intron 40.0%
AAAAATCGAGGCAAACATCG+GGG + chr3_1:63286913-63286932 None:intergenic 40.0%
CAAAAATCGAGGCAAACATC+GGG + chr3_1:63286914-63286933 None:intergenic 40.0%
CCAAAAATCGAGGCAAACAT+CGG + chr3_1:63286915-63286934 None:intergenic 40.0%
! CGATGTTTGCCTCGATTTTT+GGG - chr3_1:63286913-63286932 Msa0367590:intron 40.0%
TAGCATTCCCAATGAGTTCA+TGG + chr3_1:63287456-63287475 None:intergenic 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - chr3_1:63287463-63287482 Msa0367590:CDS 40.0%
ATATCGCCGTTCTTCTTCTG+GGG - chr3_1:63284712-63284731 Msa0367590:intron 45.0%
!!! GTTGCTTTTGCTGGTTCTAG+AGG - chr3_1:63284826-63284845 Msa0367590:three_prime_UTR 45.0%
!!! CTTTTGCTGGTTCTAGAGGA+AGG - chr3_1:63284830-63284849 Msa0367590:three_prime_UTR 45.0%
!! AGCATCGACGAGAGCAAATA+TGG + chr3_1:63284893-63284912 None:intergenic 45.0%
! TTTCAGGGTTTTCTCGCTGA+AGG - chr3_1:63284919-63284938 Msa0367590:three_prime_UTR 45.0%
! TTCAGGGTTTTCTCGCTGAA+GGG - chr3_1:63284920-63284939 Msa0367590:three_prime_UTR 45.0%
GGAGAAAACTTCAGCTGGTT+TGG - chr3_1:63284945-63284964 Msa0367590:three_prime_UTR 45.0%
GCAAGTATAGCCACTGTCAA+AGG + chr3_1:63285621-63285640 None:intergenic 45.0%
!! TTGCTATTTGGCGAGTCCAT+TGG - chr3_1:63285645-63285664 Msa0367590:intron 45.0%
ATTGGAATTGTTGGAGCTGC+CGG - chr3_1:63285663-63285682 Msa0367590:intron 45.0%
TATGACACCAAGTACAAGCC+CGG + chr3_1:63285685-63285704 None:intergenic 45.0%
! CATAGGACTTGTGTTACTCG+AGG - chr3_1:63285701-63285720 Msa0367590:intron 45.0%
GCCCAAAGTTAGCAGTCAAA+AGG - chr3_1:63285788-63285807 Msa0367590:intron 45.0%
CTCCCATCAATTGATAGGGA+AGG + chr3_1:63286006-63286025 None:intergenic 45.0%
ATGGGAGCAACTTCTCACTA+TGG - chr3_1:63286019-63286038 Msa0367590:CDS 45.0%
TGGGAGCAACTTCTCACTAT+GGG - chr3_1:63286020-63286039 Msa0367590:CDS 45.0%
AACTTCTCACTATGGGGAAG+TGG - chr3_1:63286027-63286046 Msa0367590:CDS 45.0%
ACTTCTCACTATGGGGAAGT+GGG - chr3_1:63286028-63286047 Msa0367590:CDS 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr3_1:63286123-63286142 Msa0367590:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr3_1:63286127-63286146 Msa0367590:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr3_1:63286128-63286147 Msa0367590:intron 45.0%
AGAATCGCTAATGCCACAAG+GGG + chr3_1:63286394-63286413 None:intergenic 45.0%
TAAGACTCCCACTTACAGCA+GGG + chr3_1:63286426-63286445 None:intergenic 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr3_1:63286427-63286446 None:intergenic 45.0%
GCTAACAGCGCTTCCAAAAA+TGG + chr3_1:63286491-63286510 None:intergenic 45.0%
!! TTTGGAAGCGCTGTTAGCTA+TGG - chr3_1:63286493-63286512 Msa0367590:intron 45.0%
CGTAGTTTAAATCCCCTTCG+GGG - chr3_1:63286653-63286672 Msa0367590:intron 45.0%
! CCGATGTTTGCCTCGATTTT+TGG - chr3_1:63286912-63286931 Msa0367590:intron 45.0%
GCAGTCTTACCCAAAAATCG+AGG + chr3_1:63286925-63286944 None:intergenic 45.0%
TGGGTAAGACTGCCTAACAA+TGG - chr3_1:63286932-63286951 Msa0367590:intron 45.0%
AACAAGCTGTACAGGTGAGA+AGG + chr3_1:63287319-63287338 None:intergenic 45.0%
TTCTCACCTGTACAGCTTGT+TGG - chr3_1:63287318-63287337 Msa0367590:intron 45.0%
! TCTCACCTGTACAGCTTGTT+GGG - chr3_1:63287319-63287338 Msa0367590:intron 45.0%
! TAGTGCTTTTGGACAGTGTG+TGG - chr3_1:63287474-63287493 Msa0367590:CDS 45.0%
! GAAGTGCCCCAGAAGAAGAA+CGG + chr3_1:63284721-63284740 None:intergenic 50.0%
CACTTCTTTCATCGCCACCA+TGG + chr3_1:63284743-63284762 None:intergenic 50.0%
TCGTTTCGTCTCATTCCTGC+CGG - chr3_1:63284793-63284812 Msa0367590:intron 50.0%
!! TTCCTTCTGGCTTCCATGCT+TGG - chr3_1:63284857-63284876 Msa0367590:three_prime_UTR 50.0%
GACGAGAGCAAATATGGCGA+TGG + chr3_1:63284887-63284906 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr3_1:63284904-63284923 Msa0367590:three_prime_UTR 50.0%
GGGTTGGAGAAAACTTCAGC+TGG - chr3_1:63284940-63284959 Msa0367590:three_prime_UTR 50.0%
GGCGAGTCCATTGGAATTGT+TGG - chr3_1:63285654-63285673 Msa0367590:intron 50.0%
GGCAGCTCCAACAATTCCAA+TGG + chr3_1:63285664-63285683 None:intergenic 50.0%
TTGGAATTGTTGGAGCTGCC+GGG - chr3_1:63285664-63285683 Msa0367590:intron 50.0%
!! GGGCTTGTACTTGGTGTCAT+AGG - chr3_1:63285684-63285703 Msa0367590:intron 50.0%
GGGAGCAACTTCTCACTATG+GGG - chr3_1:63286021-63286040 Msa0367590:CDS 50.0%
CTTCTCACTATGGGGAAGTG+GGG - chr3_1:63286029-63286048 Msa0367590:CDS 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr3_1:63286085-63286104 Msa0367590:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr3_1:63286132-63286151 None:intergenic 50.0%
! AAGAGGAAAGGGCGTGTGAA+AGG - chr3_1:63286280-63286299 Msa0367590:CDS 50.0%
GAATCGCTAATGCCACAAGG+GGG + chr3_1:63286393-63286412 None:intergenic 50.0%
AACAACGACCCTGCTGTAAG+TGG - chr3_1:63286415-63286434 Msa0367590:intron 50.0%
ACAACGACCCTGCTGTAAGT+GGG - chr3_1:63286416-63286435 Msa0367590:intron 50.0%
CTACGTCCACTGAGGTTACA+AGG + chr3_1:63286638-63286657 None:intergenic 50.0%
CCTTTACAACTACCCCGAAG+GGG + chr3_1:63286668-63286687 None:intergenic 50.0%
CCCTTTACAACTACCCCGAA+GGG + chr3_1:63286669-63286688 None:intergenic 50.0%
CCCTTCGGGGTAGTTGTAAA+GGG - chr3_1:63286666-63286685 Msa0367590:intron 50.0%
TCCCTTTACAACTACCCCGA+AGG + chr3_1:63286670-63286689 None:intergenic 50.0%
! GTGGAAGACGTGCACCATTT+TGG + chr3_1:63286712-63286731 None:intergenic 50.0%
!! CTCACCTGTACAGCTTGTTG+GGG - chr3_1:63287320-63287339 Msa0367590:intron 50.0%
!! CTTCTTCTGGGGCACTTCCA+TGG - chr3_1:63284723-63284742 Msa0367590:intron 55.0%
CGTTTCGTCTCATTCCTGCC+GGG - chr3_1:63284794-63284813 Msa0367590:intron 55.0%
!! AGAGGAAGGGCGTTTCCTTC+TGG - chr3_1:63284844-63284863 Msa0367590:three_prime_UTR 55.0%
AGCCAAGCATGGAAGCCAGA+AGG + chr3_1:63284862-63284881 None:intergenic 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr3_1:63284903-63284922 Msa0367590:three_prime_UTR 55.0%
! GGGTTTTCTCGCTGAAGGGT+TGG - chr3_1:63284924-63284943 Msa0367590:three_prime_UTR 55.0%
TATGGGGAAGTGGGGAGATG+TGG - chr3_1:63286037-63286056 Msa0367590:intron 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr3_1:63286062-63286081 Msa0367590:intron 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr3_1:63286080-63286099 Msa0367590:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr3_1:63286088-63286107 Msa0367590:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr3_1:63286089-63286108 Msa0367590:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr3_1:63286378-63286397 Msa0367590:CDS 55.0%
CCCCTTCGGGGTAGTTGTAA+AGG - chr3_1:63286665-63286684 Msa0367590:intron 55.0%
!! CTTCTGGGGCACTTCCATGG+TGG - chr3_1:63284726-63284745 Msa0367590:intron 60.0%
GCAACAAGAAGGAACCCGGC+AGG + chr3_1:63284811-63284830 None:intergenic 60.0%
TGGCGATGGAGAGCCAAGCA+TGG + chr3_1:63284873-63284892 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr3_1:63286069-63286088 Msa0367590:intron 60.0%
!! CCTGTACAGCTTGTTGGGGC+CGG - chr3_1:63287324-63287343 Msa0367590:intron 60.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr3_1:63285675-63285694 Msa0367590:intron 65.0%
CCGGCCCCAACAAGCTGTAC+AGG + chr3_1:63287327-63287346 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63284589 63287831 63284589 ID=Msa0367590;Name=Msa0367590
chr3_1 mRNA 63284589 63287831 63284589 ID=Msa0367590-mRNA-1;Parent=Msa0367590;Name=Msa0367590-mRNA-1;_AED=0.35;_eAED=0.35;_QI=9|1|1|1|0.71|0.62|8|377|327
chr3_1 exon 63284589 63284726 63284589 ID=Msa0367590-mRNA-1:exon:12493;Parent=Msa0367590-mRNA-1
chr3_1 exon 63284747 63284763 63284747 ID=Msa0367590-mRNA-1:exon:12492;Parent=Msa0367590-mRNA-1
chr3_1 exon 63284800 63285124 63284800 ID=Msa0367590-mRNA-1:exon:12491;Parent=Msa0367590-mRNA-1
chr3_1 exon 63285486 63285546 63285486 ID=Msa0367590-mRNA-1:exon:12490;Parent=Msa0367590-mRNA-1
chr3_1 exon 63285879 63286050 63285879 ID=Msa0367590-mRNA-1:exon:12489;Parent=Msa0367590-mRNA-1
chr3_1 exon 63286271 63286420 63286271 ID=Msa0367590-mRNA-1:exon:12488;Parent=Msa0367590-mRNA-1
chr3_1 exon 63286698 63286820 63286698 ID=Msa0367590-mRNA-1:exon:12487;Parent=Msa0367590-mRNA-1
chr3_1 exon 63287448 63287831 63287448 ID=Msa0367590-mRNA-1:exon:12486;Parent=Msa0367590-mRNA-1
chr3_1 five_prime_UTR 63287823 63287831 63287823 ID=Msa0367590-mRNA-1:five_prime_utr;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63287448 63287822 63287448 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63286698 63286820 63286698 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63286271 63286420 63286271 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63285879 63286050 63285879 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63285486 63285546 63285486 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 CDS 63285022 63285124 63285022 ID=Msa0367590-mRNA-1:cds;Parent=Msa0367590-mRNA-1
chr3_1 three_prime_UTR 63284800 63285021 63284800 ID=Msa0367590-mRNA-1:three_prime_utr;Parent=Msa0367590-mRNA-1
chr3_1 three_prime_UTR 63284747 63284763 63284747 ID=Msa0367590-mRNA-1:three_prime_utr;Parent=Msa0367590-mRNA-1
chr3_1 three_prime_UTR 63284589 63284726 63284589 ID=Msa0367590-mRNA-1:three_prime_utr;Parent=Msa0367590-mRNA-1
Gene Sequence

>Msa0367590

ATGGATAAGCCAGTAAAAGAGTGCCTCTTAAGTGCAGAAGAAGATGGAAAAGCAAGTGACAAAGATGAATCATTGCCAACGATAGTTGAAGGGTTATGGGAAGGTGCTGTGTTAATATCGCCGTTCTTCTTCTGGGGCACTTCCATGGTGGCGATGAAAGAAGTGATTCCGAAATACGGTCCTTTTTTTGTTTCTTCGTTTCGTCTCATTCCTGCCGGGTTCCTTCTTGTTGCTTTTGCTGGTTCTAGAGGAAGGGCGTTTCCTTCTGGCTTCCATGCTTGGCTCTCCATCGCCATATTTGCTCTCGTCGATGCTGCTTGCTTTCAGGGTTTTCTCGCTGAAGGGTTGGAGAAAACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTGACAGTGGCTATACTTGCGGCTTTGCTATTTGGCGAGTCCATTGGAATTGTTGGAGCTGCCGGGCTTGTACTTGGTGTCATAGGACTTGTGTTACTCGAGTTACCTTCCCTATCAATTGATGGGAGCAACTTCTCACTATGGGGAAGTGGGGAGATGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTAGCGATTCTTAACAACGACCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACTGATGTATTGGCACTCCTCTACATGTCCATTTTTGGAAGCGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTAGCTTGACCAAGCTCAGTTCACTTACATTTCTAACCCCGATGTTTGCCTCGATTTTTGGGTTTCTGTATCTTGGTGAGACCTTCTCACCTGTACAGCTTGTTGGGGCCGGTATTACTGTAGCTGCAATATACATGGTTAACTTCAGAAACACTTCAGAATGA

Protein sequence

>Msa0367590

MDKPVKECLLSAEEDGKASDKDESLPTIVEGLWEGAVLISPFFFWGTSMVAMKEVIPKYGPFFVSSFRLIPAGFLLVAFAGSRGRAFPSGFHAWLSIAIFALVDAACFQGFLAEGLEKTSAGLGSVIIDSQPLTVAILAALLFGESIGIVGAAGLVLGVIGLVLLELPSLSIDGSNFSLWGSGEMWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVALAILNNDPAVSGSLKEYSSTDVLALLYMSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGAGITVAAIYMVNFRNTSE*