AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468360 MtrunA17_Chr3g0130591 83.894 416 33 3 8 423 1 382 0.0 686
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468360 AT5G09230.2 70.924 368 107 0 56 423 6 373 0.0 557
Msa0468360 AT5G09230.7 70.924 368 107 0 56 423 9 376 0.0 557
Msa0468360 AT5G09230.1 70.924 368 107 0 56 423 6 373 0.0 557
Msa0468360 AT5G09230.5 74.000 350 91 0 74 423 5 354 0.0 556
Msa0468360 AT5G09230.3 69.279 319 98 0 56 374 6 324 4.46e-169 477
Msa0468360 AT5G09230.4 80.000 245 49 0 179 423 27 271 7.79e-149 423
Msa0468360 AT5G09230.6 80.000 245 49 0 179 423 27 271 7.79e-149 423

Find 130 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGATACCTATCGACATTT+TGG 0.150792 3_3:+69995267 None:intergenic
GGCAGAAGCAATTGAAAATT+TGG 0.197656 3_3:-69993808 Msa0468360:CDS
AATTGCTGACCTTTGGATTA+AGG 0.201173 3_3:+69995032 None:intergenic
TTCTCATTTGAAGGTGATTA+TGG 0.227697 3_3:+69991902 None:intergenic
TGGCTCACCTGGTGGGTTAT+TGG 0.229869 3_3:+69996024 None:intergenic
CCTAATGGTGCTTATAGTTC+TGG 0.247110 3_3:-69996054 Msa0468360:CDS
TAAATTCTTCAGTCAGTTAC+AGG 0.260104 3_3:+69991652 None:intergenic
GCCGAGCCAGGAGGAGATAT+TGG 0.270807 3_3:-69995397 Msa0468360:CDS
TCTTTGTAGAAGCTTATTTC+AGG 0.271782 3_3:-69995068 Msa0468360:CDS
TGAGAACACCATTGCACTTC+TGG 0.276909 3_3:+69993676 None:intergenic
TCGTTTACCGGGAAGGTTCC+GGG 0.277593 3_3:+69997200 None:intergenic
ATACAGAAGGTTGACATCTT+TGG 0.302545 3_3:+69997112 None:intergenic
GATATAAACCGTCCTCCTTT+TGG 0.309502 3_3:+69997272 None:intergenic
ACAGTCCCATGTAATTCTAA+TGG 0.310751 3_3:+69995124 None:intergenic
GCCATATCGGCTCTTTCCTT+TGG 0.319141 3_3:+69992504 None:intergenic
TAATGTCATGAGGGATAAAA+AGG 0.331600 3_3:-69997162 Msa0468360:CDS
ATCGTTTACCGGGAAGGTTC+CGG 0.336419 3_3:+69997199 None:intergenic
ATTATTTATTTCAGCCCTAA+TGG 0.338167 3_3:-69996069 Msa0468360:intron
GTGAAATAAAGCAGAGAGTA+AGG 0.338309 3_3:+69997371 None:intergenic
ATTGCTGACCTTTGGATTAA+GGG 0.339352 3_3:+69995033 None:intergenic
ATCTGCTGCTCATTGTGCTT+TGG 0.346640 3_3:-69995330 Msa0468360:CDS
CCAGAACTATAAGCACCATT+AGG 0.359965 3_3:+69996054 None:intergenic
ATTTGAACCTTGTGTTGTTC+AGG 0.365324 3_3:-69991949 Msa0468360:three_prime_UTR
CATTGCACTTCTGGCAGGTT+GGG 0.375793 3_3:+69993685 None:intergenic
TCCAAAGGAAAGAGCCGATA+TGG 0.377429 3_3:-69992505 Msa0468360:CDS
GAAGTTAAGCTTTCAGAGTC+TGG 0.381252 3_3:-69991840 Msa0468360:three_prime_UTR
AGATGCTTCCATTGCCATAT+CGG 0.402207 3_3:+69992491 None:intergenic
TTGGATTAAGGGACTTCAAC+TGG 0.402388 3_3:+69995044 None:intergenic
CTGCTAGGAACTATTATAAC+AGG 0.405024 3_3:-69997431 Msa0468360:CDS
TGTCTGACCCAGGGCTTCCA+TGG 0.409403 3_3:+69993784 None:intergenic
GGGTAACCATAAAATCAATT+CGG 0.413467 3_3:+69995288 None:intergenic
ATTATGAAGGTTGTCTTCTT+CGG 0.414780 3_3:-69992537 Msa0468360:intron
CAGTCCCATGTAATTCTAAT+GGG 0.420290 3_3:+69995125 None:intergenic
CACAGGGCAGCTCATGAGGC+TGG 0.421023 3_3:-69992235 Msa0468360:intron
CAGAACTATAAGCACCATTA+GGG 0.432825 3_3:+69996055 None:intergenic
CCCAATATCTCCTCCTGGCT+CGG 0.435419 3_3:+69995396 None:intergenic
AGGCAGAACCTTCTATAGTC+AGG 0.437249 3_3:+69996929 None:intergenic
CCGAGCCAGGAGGAGATATT+GGG 0.437495 3_3:-69995396 Msa0468360:CDS
CTCCTTGTATTGACTGGAGC+TGG 0.441040 3_3:-69996974 Msa0468360:CDS
AGGTTGACATCTTTGGTAGT+AGG 0.442715 3_3:+69997119 None:intergenic
CTGCAAGAGATTATGCTTGT+TGG 0.445302 3_3:-69991788 Msa0468360:three_prime_UTR
TTGAAAATCAATGCACGATT+GGG 0.448631 3_3:-69992157 Msa0468360:CDS
TATTGGGCTAGAAGCTATGC+TGG 0.460514 3_3:-69995380 Msa0468360:CDS
TTCACGATTTGCGCTCGCAT+TGG 0.462725 3_3:+69997722 None:intergenic
TTCTTCGTTCAAGCCGAGCC+AGG 0.462937 3_3:-69995409 Msa0468360:CDS
AATAAAGCAGAGAGTAAGGA+AGG 0.463553 3_3:+69997375 None:intergenic
ACGCTGGTATTCTCATTTGA+AGG 0.467583 3_3:+69991893 None:intergenic
AATTTGGACCATGGAAGCCC+TGG 0.472279 3_3:-69993792 Msa0468360:CDS
AGGAGTCGGTGAAATAATAA+TGG 0.475052 3_3:-69997783 Msa0468360:five_prime_UTR
TTGGCAGCTTTCGAGAAAGC+TGG 0.476655 3_3:-69995311 Msa0468360:CDS
CCTGGGTCAGACAAAAGCTT+TGG 0.483143 3_3:-69993774 Msa0468360:CDS
ACCAAGCTCCTTGTATTGAC+TGG 0.492188 3_3:-69996980 Msa0468360:CDS
CCATTGCACTTCTGGCAGGT+TGG 0.492755 3_3:+69993684 None:intergenic
AACTTTGAGCTGTTGAACTC+AGG 0.496037 3_3:+69997306 None:intergenic
TTGTGTTGTTCAGGTAATGT+AGG 0.496387 3_3:-69991940 Msa0468360:three_prime_UTR
TGCAGTCCTTTGTATTTGCA+AGG 0.496432 3_3:-69997457 Msa0468360:intron
GATCCCATGTCAAGTACTCT+TGG 0.502273 3_3:+69992024 None:intergenic
CGTTTACCGGGAAGGTTCCG+GGG 0.502356 3_3:+69997201 None:intergenic
TGAGTTCAACAGCTCAAAGT+TGG 0.507220 3_3:-69997304 Msa0468360:CDS
AACACCATTGCACTTCTGGC+AGG 0.512011 3_3:+69993680 None:intergenic
GTGCCTTTGGCTCACCTGGT+GGG 0.513441 3_3:+69996017 None:intergenic
GTGGTATCCCTGACTATAGA+AGG 0.513648 3_3:-69996937 Msa0468360:intron
GTAGTAGGAGGATCTGCATC+AGG 0.514883 3_3:+69997134 None:intergenic
AGTTGCCCATTAGAATTACA+TGG 0.518703 3_3:-69995130 Msa0468360:CDS
TTCAGGCTGCACCATCGAGC+TGG 0.518999 3_3:-69995154 Msa0468360:intron
TCAATCTCAATATCACCATC+AGG 0.519126 3_3:+69993738 None:intergenic
CATTTGAAGGTGATTATGGT+CGG 0.529787 3_3:+69991906 None:intergenic
AGTTGGAACTTAGCACCAAA+AGG 0.533341 3_3:-69997287 Msa0468360:CDS
AGAGTAAGGAAGGGTTAATG+TGG 0.534291 3_3:+69997385 None:intergenic
GCACTTCTGGCAGGTTGGGA+TGG 0.534673 3_3:+69993689 None:intergenic
TTCCAGCTCCAGTCAATACA+AGG 0.535675 3_3:+69996972 None:intergenic
CTTGAAAATCAATGCACGAT+TGG 0.538004 3_3:-69992158 Msa0468360:CDS
GCAATTGAAAATTTGGACCA+TGG 0.538406 3_3:-69993801 Msa0468360:CDS
TCCAGTCAATACAAGGAGCT+TGG 0.539077 3_3:+69996979 None:intergenic
TCTAGCCCAATATCTCCTCC+TGG 0.545671 3_3:+69995391 None:intergenic
GTTAATGTGGAAACAAGAAA+AGG 0.546804 3_3:+69997398 None:intergenic
TTGACATCTTTGGTAGTAGG+AGG 0.555544 3_3:+69997122 None:intergenic
GTGGAGCACCGTGGAGGAGT+CGG 0.560520 3_3:-69997797 Msa0468360:five_prime_UTR
GCTACTGCAATCGTCAATGT+AGG 0.564103 3_3:-69992208 Msa0468360:CDS
CTTACGATGAGAGAGGAAGA+AGG 0.565615 3_3:+69997660 None:intergenic
GTATTTGCAAGGAAACTGCT+AGG 0.568484 3_3:-69997446 Msa0468360:CDS
AATCAATGCACGATTGGGTG+AGG 0.568540 3_3:-69992152 Msa0468360:intron
AAATTCTTCAGTCAGTTACA+GGG 0.570803 3_3:+69991653 None:intergenic
TTACACAGCAGGGACGCTGA+TGG 0.576090 3_3:+69992002 None:intergenic
CTTCGGTGATAATGTTCCAA+AGG 0.576117 3_3:-69992520 Msa0468360:CDS
TGGTTACCCAAAATGTCGAT+AGG 0.577299 3_3:-69995274 Msa0468360:intron
ACTGTAATTTGTATAGATTG+TGG 0.577480 3_3:-69995097 Msa0468360:CDS
TCATGTCGAATCTCTGCCCC+CGG 0.578244 3_3:-69997218 Msa0468360:CDS
GGCAGAACCTTCTATAGTCA+GGG 0.579622 3_3:+69996930 None:intergenic
CTAGAAGCTATGCTGGGTGG+AGG 0.585143 3_3:-69995373 Msa0468360:CDS
ATGTGGAAACAAGAAAAGGA+AGG 0.586411 3_3:+69997402 None:intergenic
ATTGAAAATAATAACATGGA+CGG 0.594409 3_3:+69997693 None:intergenic
AAAGCACAATGAGCAGCAGA+TGG 0.598287 3_3:+69995332 None:intergenic
ACTGAAGAATTTAGTTCACA+TGG 0.601620 3_3:-69991642 Msa0468360:three_prime_UTR
GTTTACCGGGAAGGTTCCGG+GGG 0.606936 3_3:+69997202 None:intergenic
ATAAAGCAGAGAGTAAGGAA+GGG 0.608288 3_3:+69997376 None:intergenic
GGAAAGAGCCGATATGGCAA+TGG 0.608710 3_3:-69992499 Msa0468360:CDS
GAGAATACCAGCGTGTAGGT+AGG 0.610313 3_3:-69991884 Msa0468360:three_prime_UTR
TACATTACCTGAACAACACA+AGG 0.610693 3_3:+69991942 None:intergenic
ATTTGGACCATGGAAGCCCT+GGG 0.613997 3_3:-69993791 Msa0468360:CDS
AAGCTCAGACTAATGTCATG+AGG 0.614735 3_3:-69997172 Msa0468360:CDS
AGCTCAGACTAATGTCATGA+GGG 0.617233 3_3:-69997171 Msa0468360:CDS
TTATTTCACCGACTCCTCCA+CGG 0.619250 3_3:+69997789 None:intergenic
ATGGGCAACTACCAGCTCGA+TGG 0.623152 3_3:+69995143 None:intergenic
GTTGAAGTCCCTTAATCCAA+AGG 0.626611 3_3:-69995041 Msa0468360:intron
GACAAGTCGAAAAGCAGACA+TGG 0.628662 3_3:+69992425 None:intergenic
AAAGCTTTGGAATGAAACAA+AGG 0.629664 3_3:-69993761 Msa0468360:CDS
AAATGAGAATACCAGCGTGT+AGG 0.630221 3_3:-69991888 Msa0468360:three_prime_UTR
CAGTTTCCTTGCAAATACAA+AGG 0.631321 3_3:+69997451 None:intergenic
GGAACCTTCCCGGTAAACGA+TGG 0.634258 3_3:-69997197 Msa0468360:CDS
GGAATGAAACAAAGGCCTGA+TGG 0.637139 3_3:-69993753 Msa0468360:CDS
CCAACCTGCCAGAAGTGCAA+TGG 0.637167 3_3:-69993684 Msa0468360:CDS
GTTGCCCATTAGAATTACAT+GGG 0.644261 3_3:-69995129 Msa0468360:CDS
CGGCAGAGAAGTACGTAACG+TGG 0.645979 3_3:-69997816 None:intergenic
ATTGGGCTAGAAGCTATGCT+GGG 0.649223 3_3:-69995379 Msa0468360:CDS
GCTGGAATCAGTACAGAATG+TGG 0.649750 3_3:-69996956 Msa0468360:CDS
TGAAATTGAAAATAATAACA+TGG 0.651297 3_3:+69997689 None:intergenic
TCCGATAAAGAAAAGCGAAG+AGG 0.651484 3_3:-69997756 Msa0468360:five_prime_UTR
ACTTAGCACCAAAAGGAGGA+CGG 0.658830 3_3:-69997280 Msa0468360:CDS
AAGGGGACTTACGATGAGAG+AGG 0.659916 3_3:+69997653 None:intergenic
AATTCTTCAGTCAGTTACAG+GGG 0.662015 3_3:+69991654 None:intergenic
TTTCAGACCAATAACCCACC+AGG 0.665283 3_3:-69996031 Msa0468360:intron
CGACATTCCTACCTACACGC+TGG 0.671059 3_3:+69991877 None:intergenic
TTCGTTCAAGCCGAGCCAGG+AGG 0.674610 3_3:-69995406 Msa0468360:CDS
ATTGCCAAGAGTACTTGACA+TGG 0.677222 3_3:-69992028 Msa0468360:CDS
TTGCCAAGAGTACTTGACAT+GGG 0.680131 3_3:-69992027 Msa0468360:CDS
TGGAACTTAGCACCAAAAGG+AGG 0.686371 3_3:-69997284 Msa0468360:CDS
GGGCTAGAAGCTATGCTGGG+TGG 0.690768 3_3:-69995376 Msa0468360:CDS
ATGAGCAGCAGATGGCTGTG+CGG 0.691254 3_3:+69995340 None:intergenic
CGTAACGTGGAGCACCGTGG+AGG 0.724704 3_3:-69997803 Msa0468360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATTTCTTAAATATTA+TGG - chr3_3:69993571-69993590 Msa0468360:intron 10.0%
!!! TATTATATTTTAGTATGTTA+CGG - chr3_3:69996442-69996461 Msa0468360:intron 10.0%
!! TGAAATTGAAAATAATAACA+TGG + chr3_3:69991729-69991748 None:intergenic 15.0%
!!! TGTATGATTTTTTTGAAAAA+AGG - chr3_3:69992321-69992340 Msa0468360:intron 15.0%
!! AATTAACCTAATAATAATGA+TGG + chr3_3:69992523-69992542 None:intergenic 15.0%
!! GGTTAATTGAATTATTTATT+TGG - chr3_3:69992535-69992554 Msa0468360:intron 15.0%
!!! CCTATAAATATTTTAATAGT+GGG + chr3_3:69992606-69992625 None:intergenic 15.0%
!!! TCCTATAAATATTTTAATAG+TGG + chr3_3:69992607-69992626 None:intergenic 15.0%
!! TTAGAGATATAAACAAAAAA+AGG + chr3_3:69993205-69993224 None:intergenic 15.0%
!! ACTAAAATTTATTATCATTG+AGG - chr3_3:69993275-69993294 Msa0468360:intron 15.0%
!!! AATTATCAATTCATTTTGTT+GGG + chr3_3:69993488-69993507 None:intergenic 15.0%
!!! TAATTATCAATTCATTTTGT+TGG + chr3_3:69993489-69993508 None:intergenic 15.0%
!!! ATGAATTGATAATTAATGAA+AGG - chr3_3:69993494-69993513 Msa0468360:intron 15.0%
!! ACATTTATATTGAAGATTTA+TGG - chr3_3:69993815-69993834 Msa0468360:intron 15.0%
!! TAATATGTTATTATGTAGAA+AGG - chr3_3:69994525-69994544 Msa0468360:intron 15.0%
!!! ATAATTAACTTGTAATAACT+GGG - chr3_3:69995862-69995881 Msa0468360:intron 15.0%
!!! TAGAAAGTATAAAAAAGAAA+AGG - chr3_3:69996095-69996114 Msa0468360:intron 15.0%
!!! AATATAGTTCTGATATAAAT+TGG + chr3_3:69996356-69996375 None:intergenic 15.0%
!!! ATTATATTTTAGTATGTTAC+GGG - chr3_3:69996443-69996462 Msa0468360:intron 15.0%
!! ATTGAAAATAATAACATGGA+CGG + chr3_3:69991725-69991744 None:intergenic 20.0%
!! TGAGATTAATATAAGTCATT+TGG + chr3_3:69991810-69991829 None:intergenic 20.0%
!! GAGCTAAATATACAATAAAA+TGG + chr3_3:69991889-69991908 None:intergenic 20.0%
!! TTTCAAAAAAATCATACAGA+AGG + chr3_3:69992319-69992338 None:intergenic 20.0%
!! CCCACTATTAAAATATTTAT+AGG - chr3_3:69992603-69992622 Msa0468360:intron 20.0%
!!! TGATTTGATAGTTTGAAAAT+TGG - chr3_3:69992819-69992838 Msa0468360:intron 20.0%
!!! ACTTGCTTATTTTTATTGTT+GGG - chr3_3:69993431-69993450 Msa0468360:intron 20.0%
!!! ATTATCAATTCATTTTGTTG+GGG + chr3_3:69993487-69993506 None:intergenic 20.0%
!!! ATATTGCAGATATTTTTCTT+TGG + chr3_3:69993598-69993617 None:intergenic 20.0%
!!! ATAGAATAAAAGTTGTTGTT+TGG - chr3_3:69993652-69993671 Msa0468360:intron 20.0%
!!! TAGAATAAAAGTTGTTGTTT+GGG - chr3_3:69993653-69993672 Msa0468360:intron 20.0%
!! TTAAATAATGTCAAAGAGAA+AGG + chr3_3:69993979-69993998 None:intergenic 20.0%
!! TCTCTTTGACATTATTTAAA+AGG - chr3_3:69993980-69993999 Msa0468360:intron 20.0%
!! AATTGATCATGATAAATAAC+TGG + chr3_3:69994170-69994189 None:intergenic 20.0%
!! AAGTAAATGATAAATGCAAA+AGG + chr3_3:69994996-69995015 None:intergenic 20.0%
!! TTAATTAGTACTTTGTGAAT+CGG - chr3_3:69995064-69995083 Msa0468360:CDS 20.0%
!! AAAAGTAGAAAGAAATGTAT+AGG - chr3_3:69995106-69995125 Msa0468360:CDS 20.0%
!! TTAAAGGATTGATAAAATGA+AGG + chr3_3:69995483-69995502 None:intergenic 20.0%
!! AATTATGAAGAACAATAATC+TGG + chr3_3:69995848-69995867 None:intergenic 20.0%
!!! CATAATTAACTTGTAATAAC+TGG - chr3_3:69995861-69995880 Msa0468360:intron 20.0%
!!! TAATTAACTTGTAATAACTG+GGG - chr3_3:69995863-69995882 Msa0468360:intron 20.0%
!!! TATCGGTAGTTATTTTATAT+TGG - chr3_3:69996028-69996047 Msa0468360:intron 20.0%
!!! ATTATGGGATAGTTTTTAAA+TGG - chr3_3:69996126-69996145 Msa0468360:intron 20.0%
!!! GATAGTTTTTAAATGGTTTT+GGG - chr3_3:69996133-69996152 Msa0468360:intron 20.0%
!! TATGAATAGAGAAATATTAC+TGG - chr3_3:69996734-69996753 Msa0468360:intron 20.0%
!! ATGAATAGAGAAATATTACT+GGG - chr3_3:69996735-69996754 Msa0468360:intron 20.0%
!! AGGTATTTACAAAATTACAT+AGG - chr3_3:69997013-69997032 Msa0468360:intron 20.0%
!!! TTTCTAAATTGTATTTTCAC+AGG - chr3_3:69997163-69997182 Msa0468360:CDS 20.0%
!!! TTCTAAATTGTATTTTCACA+GGG - chr3_3:69997164-69997183 Msa0468360:CDS 20.0%
! GAGATTGAAAATGAAAAAGA+TGG + chr3_3:69992075-69992094 None:intergenic 25.0%
! TTCCTACCATCATTATTATT+AGG - chr3_3:69992514-69992533 Msa0468360:CDS 25.0%
! AACCTAATAATAATGATGGT+AGG + chr3_3:69992519-69992538 None:intergenic 25.0%
!!! TTCTATTTTGATTTTGTGCA+CGG - chr3_3:69992698-69992717 Msa0468360:intron 25.0%
! AGATTGTGATCTGATATATA+AGG - chr3_3:69992748-69992767 Msa0468360:intron 25.0%
!! GTTTCAAGTATTTAAATCCT+TGG + chr3_3:69992981-69993000 None:intergenic 25.0%
!! AAAAGCATATATCTTTGACT+CGG + chr3_3:69993101-69993120 None:intergenic 25.0%
!!! CTTTTAGAGCATAAGATTTT+GGG + chr3_3:69993168-69993187 None:intergenic 25.0%
!!! ACTTTTAGAGCATAAGATTT+TGG + chr3_3:69993169-69993188 None:intergenic 25.0%
! ATTATTTATTTCAGCCCTAA+TGG - chr3_3:69993346-69993365 Msa0468360:intron 25.0%
!!! GACTTGCTTATTTTTATTGT+TGG - chr3_3:69993430-69993449 Msa0468360:intron 25.0%
! TGATAGTTCACAAATACAAT+AGG - chr3_3:69993454-69993473 Msa0468360:intron 25.0%
! TTAAATAACCAATTGTAGCA+TGG + chr3_3:69993547-69993566 None:intergenic 25.0%
! TGCTACAATTGGTTATTTAA+TGG - chr3_3:69993547-69993566 Msa0468360:intron 25.0%
!!! TTAGTTTTCATGACTATGTT+TGG + chr3_3:69993883-69993902 None:intergenic 25.0%
! AAACATAGTCATGAAAACTA+AGG - chr3_3:69993882-69993901 Msa0468360:intron 25.0%
!!! TTGTGTTATATCTTGTTTTC+AGG - chr3_3:69994244-69994263 Msa0468360:intron 25.0%
!! ACTGTAATTTGTATAGATTG+TGG - chr3_3:69994318-69994337 Msa0468360:intron 25.0%
!!! GCAATTTGCGTTTATTTTAT+TGG - chr3_3:69994400-69994419 Msa0468360:intron 25.0%
! AGATAAGACATAATGATTCT+TGG - chr3_3:69994580-69994599 Msa0468360:intron 25.0%
! AGATAAGACATAATGATTCT+TGG - chr3_3:69994580-69994599 Msa0468360:intron 25.0%
!! CTATCATTTTGTGTTAGTTA+TGG - chr3_3:69994914-69994933 Msa0468360:intron 25.0%
! CAGAGAAATTAGATCATTAA+TGG + chr3_3:69995044-69995063 None:intergenic 25.0%
! TCTCAGGAAATATGTTTAAT+AGG - chr3_3:69995348-69995367 Msa0468360:CDS 25.0%
!! TTGAGATTGACGAAAAATTT+TGG - chr3_3:69995690-69995709 Msa0468360:intron 25.0%
!! TGAGATTGACGAAAAATTTT+GGG - chr3_3:69995691-69995710 Msa0468360:intron 25.0%
! TCTCTTACACAAAAATATGA+AGG - chr3_3:69995961-69995980 Msa0468360:intron 25.0%
! CTCTTACACAAAAATATGAA+GGG - chr3_3:69995962-69995981 Msa0468360:intron 25.0%
! AATATGAAGGGTAAAAACAA+AGG - chr3_3:69995974-69995993 Msa0468360:intron 25.0%
!! GGATAGTTTTTAAATGGTTT+TGG - chr3_3:69996132-69996151 Msa0468360:intron 25.0%
!!! TAGAAACTGACTTTTATTGA+TGG + chr3_3:69996312-69996331 None:intergenic 25.0%
! AGATGAATGCACAATATAAA+TGG + chr3_3:69996536-69996555 None:intergenic 25.0%
! TTGACTGTCATTAATTATGA+AGG - chr3_3:69996865-69996884 Msa0468360:intron 25.0%
!!! ATATTTTTACTTTGTCTGTG+AGG - chr3_3:69997108-69997127 Msa0468360:CDS 25.0%
!!! TGAATTTAAAGCAACTTTTC+AGG + chr3_3:69997715-69997734 None:intergenic 25.0%
GTTAATGTGGAAACAAGAAA+AGG + chr3_3:69992020-69992039 None:intergenic 30.0%
TAATGTCATGAGGGATAAAA+AGG - chr3_3:69992253-69992272 Msa0468360:intron 30.0%
! TCACTTTCTCAACGTATTTT+TGG - chr3_3:69992351-69992370 Msa0468360:intron 30.0%
TTCAAACTGAAATTCAGTCA+AGG + chr3_3:69992407-69992426 None:intergenic 30.0%
! TTAATAGTGGGAATATCAAG+TGG + chr3_3:69992594-69992613 None:intergenic 30.0%
ATATATCAGATCACAATCTG+CGG + chr3_3:69992747-69992766 None:intergenic 30.0%
TGAAACTGAGAAAACTTTGT+GGG + chr3_3:69992774-69992793 None:intergenic 30.0%
ATCAAATCATATCACCTACA+TGG + chr3_3:69992808-69992827 None:intergenic 30.0%
TTTCCAGAAAAGAGATATCT+AGG - chr3_3:69992872-69992891 Msa0468360:intron 30.0%
! AAAGAGATATCTAGGTCTTT+TGG - chr3_3:69992880-69992899 Msa0468360:intron 30.0%
! AAGAGATATCTAGGTCTTTT+GGG - chr3_3:69992881-69992900 Msa0468360:intron 30.0%
ATGCAACACATTACCATTAA+AGG + chr3_3:69992915-69992934 None:intergenic 30.0%
CACTAAATGACAATGACTAA+TGG + chr3_3:69993077-69993096 None:intergenic 30.0%
! CATTAGTCATTGTCATTTAG+TGG - chr3_3:69993075-69993094 Msa0468360:intron 30.0%
!!! GCATAAGATTTTGGGATAAT+TGG + chr3_3:69993160-69993179 None:intergenic 30.0%
CTAACATATGTTCATCCTTA+TGG - chr3_3:69993221-69993240 Msa0468360:intron 30.0%
AGTTTCACATCTTGAGAATA+TGG - chr3_3:69993244-69993263 Msa0468360:intron 30.0%
TTTAGATACCATGCTACAAT+TGG - chr3_3:69993536-69993555 Msa0468360:intron 30.0%
! GTTGTTTGGGTTAATTGAAT+AGG - chr3_3:69993666-69993685 Msa0468360:intron 30.0%
GATATTTGCATCTTGACAAA+AGG - chr3_3:69993688-69993707 Msa0468360:CDS 30.0%
TTGAAGATTTATGGCAATGA+CGG - chr3_3:69993824-69993843 Msa0468360:intron 30.0%
CATGAAAACTAAGGAATTCA+AGG - chr3_3:69993891-69993910 Msa0468360:intron 30.0%
CTTAAACTCAAATACTACGA+TGG + chr3_3:69993952-69993971 None:intergenic 30.0%
GGGTAACCATAAAATCAATT+CGG + chr3_3:69994130-69994149 None:intergenic 30.0%
ATGATCAATTAAGCCTTCTT+AGG - chr3_3:69994180-69994199 Msa0468360:intron 30.0%
ATATAACACAACTCAAGGAT+AGG + chr3_3:69994235-69994254 None:intergenic 30.0%
ACAAGATATAACACAACTCA+AGG + chr3_3:69994240-69994259 None:intergenic 30.0%
TCTTTGTAGAAGCTTATTTC+AGG - chr3_3:69994347-69994366 Msa0468360:intron 30.0%
TAAGACATAATGATTCTTGG+TGG - chr3_3:69994583-69994602 Msa0468360:intron 30.0%
TAAGACATAATGATTCTTGG+TGG - chr3_3:69994583-69994602 Msa0468360:intron 30.0%
!! GATGATAGTTGTAGTTTGTT+AGG - chr3_3:69994605-69994624 Msa0468360:intron 30.0%
!!! GATAGAGGCAGATTATTTTT+TGG - chr3_3:69994885-69994904 Msa0468360:intron 30.0%
!! ATAAGAGTATTGTTCTCTGA+TGG - chr3_3:69994939-69994958 Msa0468360:intron 30.0%
ATTGCTTGCAAGATTAAAGA+TGG + chr3_3:69995287-69995306 None:intergenic 30.0%
CAATCCTTTAACGTAATAGT+TGG - chr3_3:69995492-69995511 Msa0468360:intron 30.0%
CAAAAATCAGAAGAAACTTG+TGG + chr3_3:69995541-69995560 None:intergenic 30.0%
!! AAAGCTTTGGAATGAAACAA+AGG - chr3_3:69995654-69995673 Msa0468360:intron 30.0%
TGCTTCTTTCAGTTATATGT+CGG - chr3_3:69995781-69995800 Msa0468360:intron 30.0%
AATCTGGCACAAAATAAACA+GGG + chr3_3:69995832-69995851 None:intergenic 30.0%
TAATCTGGCACAAAATAAAC+AGG + chr3_3:69995833-69995852 None:intergenic 30.0%
AGTTTGTAAATCTGATAGAG+TGG - chr3_3:69995912-69995931 Msa0468360:intron 30.0%
!! ACTTGTTTGACTTCTTTTTG+TGG - chr3_3:69996001-69996020 Msa0468360:intron 30.0%
!!! AGTTTTTAAATGGTTTTGGG+AGG - chr3_3:69996136-69996155 Msa0468360:intron 30.0%
!!! GTTTTTAAATGGTTTTGGGA+GGG - chr3_3:69996137-69996156 Msa0468360:intron 30.0%
TAATAACATCCAGAATGCAA+CGG + chr3_3:69996427-69996446 None:intergenic 30.0%
! ATAAGTACATGGTGTGTTTT+TGG - chr3_3:69996641-69996660 Msa0468360:intron 30.0%
TGTTTCTTCAAGCTAAATCA+TGG + chr3_3:69996679-69996698 None:intergenic 30.0%
ATTATGAAGGTTGTCTTCTT+CGG - chr3_3:69996878-69996897 Msa0468360:intron 30.0%
! GAAATTACTTGCTGCATATT+TGG - chr3_3:69997130-69997149 Msa0468360:CDS 30.0%
!!! AATCGTGCATTGATTTTCAA+GGG + chr3_3:69997258-69997277 None:intergenic 30.0%
TTGAAAATCAATGCACGATT+GGG - chr3_3:69997258-69997277 Msa0468360:CDS 30.0%
! GCAACAGTTTGTTCAAATTT+GGG + chr3_3:69997356-69997375 None:intergenic 30.0%
! TGCAACAGTTTGTTCAAATT+TGG + chr3_3:69997357-69997376 None:intergenic 30.0%
! TCTATTTTCATTACACAGCA+GGG + chr3_3:69997426-69997445 None:intergenic 30.0%
! ATCTATTTTCATTACACAGC+AGG + chr3_3:69997427-69997446 None:intergenic 30.0%
TTCTCATTTGAAGGTGATTA+TGG + chr3_3:69997516-69997535 None:intergenic 30.0%
AAATTCTTCAGTCAGTTACA+GGG + chr3_3:69997765-69997784 None:intergenic 30.0%
TAAATTCTTCAGTCAGTTAC+AGG + chr3_3:69997766-69997785 None:intergenic 30.0%
! ACTGAAGAATTTAGTTCACA+TGG - chr3_3:69997773-69997792 Msa0468360:five_prime_UTR 30.0%
AGGAGTCGGTGAAATAATAA+TGG - chr3_3:69991632-69991651 Msa0468360:three_prime_UTR 35.0%
ATTTGGATTGAGAAAGAGAG+AGG + chr3_3:69991793-69991812 None:intergenic 35.0%
CAGTTTCCTTGCAAATACAA+AGG + chr3_3:69991967-69991986 None:intergenic 35.0%
CTGCTAGGAACTATTATAAC+AGG - chr3_3:69991984-69992003 Msa0468360:exon 35.0%
ATGTGGAAACAAGAAAAGGA+AGG + chr3_3:69992016-69992035 None:intergenic 35.0%
ATAAAGCAGAGAGTAAGGAA+GGG + chr3_3:69992042-69992061 None:intergenic 35.0%
AATAAAGCAGAGAGTAAGGA+AGG + chr3_3:69992043-69992062 None:intergenic 35.0%
GTGAAATAAAGCAGAGAGTA+AGG + chr3_3:69992047-69992066 None:intergenic 35.0%
! CGGTTTATATCTTTTAAGCG+CGG - chr3_3:69992155-69992174 Msa0468360:CDS 35.0%
ATACAGAAGGTTGACATCTT+TGG + chr3_3:69992306-69992325 None:intergenic 35.0%
TAATGATGGTAGGAAGTAAG+AGG + chr3_3:69992509-69992528 None:intergenic 35.0%
CAATTCTGAGCATAACTTCA+TGG + chr3_3:69992571-69992590 None:intergenic 35.0%
ATATAGCATTCGTAAACCGA+TGG - chr3_3:69992644-69992663 Msa0468360:intron 35.0%
!! TTTGATTTTGTGCACGGTAT+AGG - chr3_3:69992704-69992723 Msa0468360:intron 35.0%
GTGAAACTGAGAAAACTTTG+TGG + chr3_3:69992775-69992794 None:intergenic 35.0%
! AGACCTAGATATCTCTTTTC+TGG + chr3_3:69992878-69992897 None:intergenic 35.0%
! AGAGATATCTAGGTCTTTTG+GGG - chr3_3:69992882-69992901 Msa0468360:intron 35.0%
TTGGGGATTTCAACCTTTAA+TGG - chr3_3:69992899-69992918 Msa0468360:intron 35.0%
GTTGCATCAGTATGTATATG+TGG - chr3_3:69992928-69992947 Msa0468360:intron 35.0%
TCAGTATGTATATGTGGCAA+AGG - chr3_3:69992934-69992953 Msa0468360:intron 35.0%
CAGTATGTATATGTGGCAAA+GGG - chr3_3:69992935-69992954 Msa0468360:intron 35.0%
AGTATGTATATGTGGCAAAG+GGG - chr3_3:69992936-69992955 Msa0468360:intron 35.0%
! CTCTAAAAGTGAAGATTGCA+TGG - chr3_3:69993179-69993198 Msa0468360:intron 35.0%
TCAAGATGTGAAACTCCATA+AGG + chr3_3:69993239-69993258 None:intergenic 35.0%
CAGAACTATAAGCACCATTA+GGG + chr3_3:69993363-69993382 None:intergenic 35.0%
! TGGATACCTATCGACATTTT+GGG + chr3_3:69994150-69994169 None:intergenic 35.0%
ATATCTCGAGTATCCTAAGA+AGG + chr3_3:69994196-69994215 None:intergenic 35.0%
AGTTGCCCATTAGAATTACA+TGG - chr3_3:69994285-69994304 Msa0468360:intron 35.0%
GTTGCCCATTAGAATTACAT+GGG - chr3_3:69994286-69994305 Msa0468360:intron 35.0%
CAGTCCCATGTAATTCTAAT+GGG + chr3_3:69994293-69994312 None:intergenic 35.0%
ACAGTCCCATGTAATTCTAA+TGG + chr3_3:69994294-69994313 None:intergenic 35.0%
ATTGCTGACCTTTGGATTAA+GGG + chr3_3:69994385-69994404 None:intergenic 35.0%
AATTGCTGACCTTTGGATTA+AGG + chr3_3:69994386-69994405 None:intergenic 35.0%
AGAGAAGTTAAACAGTGTAG+TGG - chr3_3:69994837-69994856 Msa0468360:intron 35.0%
GAGAAGTTAAACAGTGTAGT+GGG - chr3_3:69994838-69994857 Msa0468360:intron 35.0%
TAGTGGGAGTCAGTTATATA+GGG - chr3_3:69994854-69994873 Msa0468360:intron 35.0%
AACAGTCTCTTAAGTTTCTC+AGG - chr3_3:69995332-69995351 Msa0468360:CDS 35.0%
ATGTGATCAGAAGTGATAAG+TGG + chr3_3:69995380-69995399 None:intergenic 35.0%
CTAATATGTGGTCTTTCAAC+TGG - chr3_3:69995404-69995423 Msa0468360:CDS 35.0%
AGCTCCAACTATTACGTTAA+AGG + chr3_3:69995499-69995518 None:intergenic 35.0%
! AACATTGTGTTCTAAACCAG+TGG - chr3_3:69995585-69995604 Msa0468360:intron 35.0%
! ACATTGTGTTCTAAACCAGT+GGG - chr3_3:69995586-69995605 Msa0468360:intron 35.0%
GCAATTGAAAATTTGGACCA+TGG - chr3_3:69995614-69995633 Msa0468360:intron 35.0%
TCAATCTCAATATCACCATC+AGG + chr3_3:69995680-69995699 None:intergenic 35.0%
! GATTGACGAAAAATTTTGGG+AGG - chr3_3:69995694-69995713 Msa0468360:intron 35.0%
! TGTCGGTTATTTGTATTGAG+TGG - chr3_3:69995798-69995817 Msa0468360:intron 35.0%
TGTAAGAGAGATACAGTTAG+GGG + chr3_3:69995950-69995969 None:intergenic 35.0%
GTGTAAGAGAGATACAGTTA+GGG + chr3_3:69995951-69995970 None:intergenic 35.0%
TGTGTAAGAGAGATACAGTT+AGG + chr3_3:69995952-69995971 None:intergenic 35.0%
! CTTCTTTTTGTGGCAGTTAT+CGG - chr3_3:69996011-69996030 Msa0468360:intron 35.0%
CAGTTACGTATAGCAGTTAT+TGG - chr3_3:69996054-69996073 Msa0468360:CDS 35.0%
AGAAAAGGAGAACGTGATTA+TGG - chr3_3:69996110-69996129 Msa0468360:intron 35.0%
GAAAAGGAGAACGTGATTAT+GGG - chr3_3:69996111-69996130 Msa0468360:intron 35.0%
ATCAGGTCTCTCAAATTTCT+TGG - chr3_3:69996193-69996212 Msa0468360:intron 35.0%
AACAGGAAAAATAGTTGCCA+AGG + chr3_3:69996478-69996497 None:intergenic 35.0%
!! TGGCAACTATTTTTCCTGTT+TGG - chr3_3:69996478-69996497 Msa0468360:intron 35.0%
!! CTATTTTTCCTGTTTGGCTT+TGG - chr3_3:69996484-69996503 Msa0468360:intron 35.0%
GTACTTATGTCAGAAGAGAT+AGG + chr3_3:69996629-69996648 None:intergenic 35.0%
TCTCTTCTGACATAAGTACA+TGG - chr3_3:69996630-69996649 Msa0468360:intron 35.0%
CTTATTATGCTAGCAACACA+TGG - chr3_3:69996785-69996804 Msa0468360:intron 35.0%
! TGTGATGCTTTTCTTGTACT+AGG - chr3_3:69996953-69996972 Msa0468360:CDS 35.0%
! GTGATGCTTTTCTTGTACTA+GGG - chr3_3:69996954-69996973 Msa0468360:CDS 35.0%
!!! CAATCGTGCATTGATTTTCA+AGG + chr3_3:69997259-69997278 None:intergenic 35.0%
CTTGAAAATCAATGCACGAT+TGG - chr3_3:69997257-69997276 Msa0468360:CDS 35.0%
! ATTTGAACCTTGTGTTGTTC+AGG - chr3_3:69997466-69997485 Msa0468360:intron 35.0%
TACATTACCTGAACAACACA+AGG + chr3_3:69997476-69997495 None:intergenic 35.0%
! TTGTGTTGTTCAGGTAATGT+AGG - chr3_3:69997475-69997494 Msa0468360:intron 35.0%
CATTTGAAGGTGATTATGGT+CGG + chr3_3:69997512-69997531 None:intergenic 35.0%
AATTCTTCAGTCAGTTACAG+GGG + chr3_3:69997764-69997783 None:intergenic 35.0%
!! CTTCGCTTTTCTTTATCGGA+CGG + chr3_3:69991659-69991678 None:intergenic 40.0%
TCCGATAAAGAAAAGCGAAG+AGG - chr3_3:69991659-69991678 Msa0468360:three_prime_UTR 40.0%
!! GCCTCTTCGCTTTTCTTTAT+CGG + chr3_3:69991663-69991682 None:intergenic 40.0%
TGCAGTCCTTTGTATTTGCA+AGG - chr3_3:69991958-69991977 Msa0468360:three_prime_UTR 40.0%
GTATTTGCAAGGAAACTGCT+AGG - chr3_3:69991969-69991988 Msa0468360:three_prime_UTR 40.0%
AGAGTAAGGAAGGGTTAATG+TGG + chr3_3:69992033-69992052 None:intergenic 40.0%
AACTTTGAGCTGTTGAACTC+AGG + chr3_3:69992112-69992131 None:intergenic 40.0%
TGAGTTCAACAGCTCAAAGT+TGG - chr3_3:69992111-69992130 Msa0468360:intron 40.0%
AGTTGGAACTTAGCACCAAA+AGG - chr3_3:69992128-69992147 Msa0468360:intron 40.0%
! GATATAAACCGTCCTCCTTT+TGG + chr3_3:69992146-69992165 None:intergenic 40.0%
! TGAGCTTTTCCATCGTTTAC+CGG + chr3_3:69992230-69992249 None:intergenic 40.0%
AAGCTCAGACTAATGTCATG+AGG - chr3_3:69992243-69992262 Msa0468360:intron 40.0%
AGCTCAGACTAATGTCATGA+GGG - chr3_3:69992244-69992263 Msa0468360:intron 40.0%
! TTGACATCTTTGGTAGTAGG+AGG + chr3_3:69992296-69992315 None:intergenic 40.0%
! AGGTTGACATCTTTGGTAGT+AGG + chr3_3:69992299-69992318 None:intergenic 40.0%
! TCACACTTTGTTTGCCATGT+AGG - chr3_3:69992791-69992810 Msa0468360:intron 40.0%
GTATGTATATGTGGCAAAGG+GGG - chr3_3:69992937-69992956 Msa0468360:intron 40.0%
AGAAGATCATATAGTGGCCA+AGG - chr3_3:69992961-69992980 Msa0468360:intron 40.0%
CCAGAACTATAAGCACCATT+AGG + chr3_3:69993364-69993383 None:intergenic 40.0%
CCTAATGGTGCTTATAGTTC+TGG - chr3_3:69993361-69993380 Msa0468360:intron 40.0%
ATTTATGGCAATGACGGTGA+AGG - chr3_3:69993830-69993849 Msa0468360:intron 40.0%
TTTATGGCAATGACGGTGAA+GGG - chr3_3:69993831-69993850 Msa0468360:intron 40.0%
!! AGCTGGCCGAATTGATTTTA+TGG - chr3_3:69994121-69994140 Msa0468360:intron 40.0%
TGGTTACCCAAAATGTCGAT+AGG - chr3_3:69994141-69994160 Msa0468360:intron 40.0%
! CTGGATACCTATCGACATTT+TGG + chr3_3:69994151-69994170 None:intergenic 40.0%
TTGGATTAAGGGACTTCAAC+TGG + chr3_3:69994374-69994393 None:intergenic 40.0%
GTTGAAGTCCCTTAATCCAA+AGG - chr3_3:69994374-69994393 Msa0468360:intron 40.0%
AAACGCAAATTGCTGACCTT+TGG + chr3_3:69994393-69994412 None:intergenic 40.0%
AGCATAAACCCGTTGAATAC+TGG + chr3_3:69994751-69994770 None:intergenic 40.0%
GGGTTTATGCTTGAACTAGA+CGG - chr3_3:69994760-69994779 Msa0468360:intron 40.0%
ATGCTTGAACTAGACGGAAT+AGG - chr3_3:69994766-69994785 Msa0468360:intron 40.0%
! GTTTGTTGGGATTATCCATG+AGG - chr3_3:69994803-69994822 Msa0468360:intron 40.0%
! GTAGTGGGAGTCAGTTATAT+AGG - chr3_3:69994853-69994872 Msa0468360:intron 40.0%
TATTGTTCTCTGATGGAGCT+TGG - chr3_3:69994946-69994965 Msa0468360:intron 40.0%
ATCCAGTGAAAGCTTCCAAA+TGG - chr3_3:69995175-69995194 Msa0468360:intron 40.0%
AACCATTTGGAAGCTTTCAC+TGG + chr3_3:69995180-69995199 None:intergenic 40.0%
GTGAAAGCTTCCAAATGGTT+TGG - chr3_3:69995180-69995199 Msa0468360:intron 40.0%
! CTTCCAAATGGTTTGGACTT+CGG - chr3_3:69995187-69995206 Msa0468360:intron 40.0%
! TTCCAAATGGTTTGGACTTC+GGG - chr3_3:69995188-69995207 Msa0468360:intron 40.0%
GATCACATGCGTCTAATATG+TGG - chr3_3:69995392-69995411 Msa0468360:CDS 40.0%
!! TGACGAAAAATTTTGGGAGG+AGG - chr3_3:69995697-69995716 Msa0468360:intron 40.0%
TGTTCTCTTGAAGTATAGCG+CGG - chr3_3:69996382-69996401 Msa0468360:intron 40.0%
GGAAAAATAGTTGCCAAGGA+AGG + chr3_3:69996474-69996493 None:intergenic 40.0%
TGAAAACATTGATGTGCGCT+CGG - chr3_3:69996573-69996592 Msa0468360:intron 40.0%
AGCTTGAAGAAACAGACTAC+AGG - chr3_3:69996685-69996704 Msa0468360:intron 40.0%
! CTTCGGTGATAATGTTCCAA+AGG - chr3_3:69996895-69996914 Msa0468360:intron 40.0%
AGATGCTTCCATTGCCATAT+CGG + chr3_3:69996927-69996946 None:intergenic 40.0%
ATCCGAACACTGTCACTAAA+GGG + chr3_3:69997039-69997058 None:intergenic 40.0%
GTATGGCTTGAAAAGTGATC+TGG - chr3_3:69997285-69997304 Msa0468360:CDS 40.0%
!! ATTGCCAAGAGTACTTGACA+TGG - chr3_3:69997387-69997406 Msa0468360:CDS 40.0%
!! TTGCCAAGAGTACTTGACAT+GGG - chr3_3:69997388-69997407 Msa0468360:CDS 40.0%
ACGCTGGTATTCTCATTTGA+AGG + chr3_3:69997525-69997544 None:intergenic 40.0%
AAATGAGAATACCAGCGTGT+AGG - chr3_3:69997527-69997546 Msa0468360:intron 40.0%
GAAGTTAAGCTTTCAGAGTC+TGG - chr3_3:69997575-69997594 Msa0468360:intron 40.0%
CTGCAAGAGATTATGCTTGT+TGG - chr3_3:69997627-69997646 Msa0468360:intron 40.0%
!!! AAAGCAACTTTTCAGGTCAC+TGG + chr3_3:69997708-69997727 None:intergenic 40.0%
!! TTATTTCACCGACTCCTCCA+CGG + chr3_3:69991629-69991648 None:intergenic 45.0%
CTTACGATGAGAGAGGAAGA+AGG + chr3_3:69991758-69991777 None:intergenic 45.0%
AGAAAGAGAGAGGAGGAGAA+GGG + chr3_3:69991783-69991802 None:intergenic 45.0%
TGGATTGAGAAAGAGAGAGG+AGG + chr3_3:69991790-69991809 None:intergenic 45.0%
TGGAACTTAGCACCAAAAGG+AGG - chr3_3:69992131-69992150 Msa0468360:intron 45.0%
ACTTAGCACCAAAAGGAGGA+CGG - chr3_3:69992135-69992154 Msa0468360:intron 45.0%
! TATCTTTTAAGCGCGGTGCA+AGG - chr3_3:69992162-69992181 Msa0468360:CDS 45.0%
! TTTTCCATCGTTTACCGGGA+AGG + chr3_3:69992225-69992244 None:intergenic 45.0%
! GAGCTTTTCCATCGTTTACC+GGG + chr3_3:69992229-69992248 None:intergenic 45.0%
! ACCAAGCTCCTTGTATTGAC+TGG - chr3_3:69992435-69992454 Msa0468360:CDS 45.0%
TCCAGTCAATACAAGGAGCT+TGG + chr3_3:69992439-69992458 None:intergenic 45.0%
TTCCAGCTCCAGTCAATACA+AGG + chr3_3:69992446-69992465 None:intergenic 45.0%
GCTGGAATCAGTACAGAATG+TGG - chr3_3:69992459-69992478 Msa0468360:CDS 45.0%
GTGGTATCCCTGACTATAGA+AGG - chr3_3:69992478-69992497 Msa0468360:CDS 45.0%
GGCAGAACCTTCTATAGTCA+GGG + chr3_3:69992488-69992507 None:intergenic 45.0%
AGGCAGAACCTTCTATAGTC+AGG + chr3_3:69992489-69992508 None:intergenic 45.0%
TAAACCGATGGCAACTAGAG+AGG - chr3_3:69992656-69992675 Msa0468360:intron 45.0%
CAATCCTCTCTAGTTGCCAT+CGG + chr3_3:69992663-69992682 None:intergenic 45.0%
GGCAACTAGAGAGGATTGAA+TGG - chr3_3:69992665-69992684 Msa0468360:intron 45.0%
AGATCACAATCTGCGGAGAA+GGG + chr3_3:69992740-69992759 None:intergenic 45.0%
TGAAACCATACGCATGCATG+AGG - chr3_3:69992995-69993014 Msa0468360:intron 45.0%
TTTCAGACCAATAACCCACC+AGG - chr3_3:69993384-69993403 Msa0468360:intron 45.0%
TTATGGCAATGACGGTGAAG+GGG - chr3_3:69993832-69993851 Msa0468360:intron 45.0%
! TATTGGGCTAGAAGCTATGC+TGG - chr3_3:69994035-69994054 Msa0468360:intron 45.0%
! ATTGGGCTAGAAGCTATGCT+GGG - chr3_3:69994036-69994055 Msa0468360:intron 45.0%
AAAGCACAATGAGCAGCAGA+TGG + chr3_3:69994086-69994105 None:intergenic 45.0%
ATCTGCTGCTCATTGTGCTT+TGG - chr3_3:69994085-69994104 Msa0468360:intron 45.0%
CGATCTGACGATCAAAGTCA+TGG - chr3_3:69994489-69994508 Msa0468360:intron 45.0%
TTGGCCCACTTCTCTCATAT+GGG + chr3_3:69994695-69994714 None:intergenic 45.0%
TTTGGCCCACTTCTCTCATA+TGG + chr3_3:69994696-69994715 None:intergenic 45.0%
TATGAGAGAAGTGGGCCAAA+TGG - chr3_3:69994696-69994715 Msa0468360:intron 45.0%
ATGAGAGAAGTGGGCCAAAT+GGG - chr3_3:69994697-69994716 Msa0468360:intron 45.0%
ACCCGTTGAATACTGGACTA+GGG + chr3_3:69994744-69994763 None:intergenic 45.0%
AACCCGTTGAATACTGGACT+AGG + chr3_3:69994745-69994764 None:intergenic 45.0%
GGAATAGGAAAGAGCAGAGT+GGG - chr3_3:69994781-69994800 Msa0468360:intron 45.0%
! AAAGAGCAGAGTGGGTTTGT+TGG - chr3_3:69994789-69994808 Msa0468360:intron 45.0%
! AAGAGCAGAGTGGGTTTGTT+GGG - chr3_3:69994790-69994809 Msa0468360:intron 45.0%
TATAGGGACTGAAGCGATAG+AGG - chr3_3:69994870-69994889 Msa0468360:intron 45.0%
TACCCGAAGTCCAAACCATT+TGG + chr3_3:69995193-69995212 None:intergenic 45.0%
TGGACTTCGGGTAACATTAC+TGG - chr3_3:69995200-69995219 Msa0468360:intron 45.0%
GTGGTCTTTCAACTGGAAGT+TGG - chr3_3:69995411-69995430 Msa0468360:CDS 45.0%
! CAAAGCTTTTGTCTGACCCA+GGG + chr3_3:69995643-69995662 None:intergenic 45.0%
GGAATGAAACAAAGGCCTGA+TGG - chr3_3:69995662-69995681 Msa0468360:intron 45.0%
TGAGAACACCATTGCACTTC+TGG + chr3_3:69995742-69995761 None:intergenic 45.0%
GGTGTTCTCAAACCTGATGT+AGG - chr3_3:69995752-69995771 Msa0468360:intron 45.0%
GAAGCAAGATGACCTACATC+AGG + chr3_3:69995767-69995786 None:intergenic 45.0%
AGACCGATCTCTCGAATTCT+TGG - chr3_3:69996162-69996181 Msa0468360:intron 45.0%
CCTCCAAGAATTCGAGAGAT+CGG + chr3_3:69996168-69996187 None:intergenic 45.0%
CGATCTCTCGAATTCTTGGA+GGG - chr3_3:69996166-69996185 Msa0468360:intron 45.0%
AATTCTTGGAGGGAGAGATC+AGG - chr3_3:69996176-69996195 Msa0468360:intron 45.0%
CAGAATGCAACGGAACAAAC+AGG + chr3_3:69996417-69996436 None:intergenic 45.0%
CTGTTTGTTCCGTTGCATTC+TGG - chr3_3:69996415-69996434 Msa0468360:intron 45.0%
GTTACGGGATTATCCTTCCT+TGG - chr3_3:69996458-69996477 Msa0468360:intron 45.0%
TAGTCTAGCCAAAGCCAAAC+AGG + chr3_3:69996495-69996514 None:intergenic 45.0%
GAAGAGATAGGTCAGCATCA+AGG + chr3_3:69996617-69996636 None:intergenic 45.0%
TCCAAAGGAAAGAGCCGATA+TGG - chr3_3:69996910-69996929 Msa0468360:intron 45.0%
GACAAGTCGAAAAGCAGACA+TGG + chr3_3:69996993-69997012 None:intergenic 45.0%
!! TGTCTGCTTTTCGACTTGTC+AGG - chr3_3:69996993-69997012 Msa0468360:intron 45.0%
CATCCGAACACTGTCACTAA+AGG + chr3_3:69997040-69997059 None:intergenic 45.0%
TCGGATGAACGAGAGAGATT+TGG - chr3_3:69997053-69997072 Msa0468360:intron 45.0%
GCTACTGCAATCGTCAATGT+AGG - chr3_3:69997207-69997226 Msa0468360:CDS 45.0%
AATCAATGCACGATTGGGTG+AGG - chr3_3:69997263-69997282 Msa0468360:CDS 45.0%
GCTTGAAAAGTGATCTGGAC+TGG - chr3_3:69997290-69997309 Msa0468360:CDS 45.0%
GATCCCATGTCAAGTACTCT+TGG + chr3_3:69997394-69997413 None:intergenic 45.0%
!!! TTAATTAATTAATTGTTTTA+TGG + chr3_3:69991860-69991879 None:intergenic 5.0%
TTCACGATTTGCGCTCGCAT+TGG + chr3_3:69991696-69991715 None:intergenic 50.0%
AAGGGGACTTACGATGAGAG+AGG + chr3_3:69991765-69991784 None:intergenic 50.0%
GAAAGAGAGAGGAGGAGAAG+GGG + chr3_3:69991782-69991801 None:intergenic 50.0%
GAGAAAGAGAGAGGAGGAGA+AGG + chr3_3:69991784-69991803 None:intergenic 50.0%
ATCGTTTACCGGGAAGGTTC+CGG + chr3_3:69992219-69992238 None:intergenic 50.0%
GTAGTAGGAGGATCTGCATC+AGG + chr3_3:69992284-69992303 None:intergenic 50.0%
!! CTCCTTGTATTGACTGGAGC+TGG - chr3_3:69992441-69992460 Msa0468360:CDS 50.0%
CAGATCACAATCTGCGGAGA+AGG + chr3_3:69992741-69992760 None:intergenic 50.0%
GGGGGCAGAAGATCATATAG+TGG - chr3_3:69992955-69992974 Msa0468360:intron 50.0%
ATGCATGAGGCAGCTATTGC+AGG - chr3_3:69993008-69993027 Msa0468360:intron 50.0%
TGCATGAGGCAGCTATTGCA+GGG - chr3_3:69993009-69993028 Msa0468360:intron 50.0%
AGTCTAGTTGACCGTGCCTT+TGG + chr3_3:69993414-69993433 None:intergenic 50.0%
TATGGCAATGACGGTGAAGG+GGG - chr3_3:69993833-69993852 Msa0468360:intron 50.0%
TCTAGCCCAATATCTCCTCC+TGG + chr3_3:69994027-69994046 None:intergenic 50.0%
TTGGCAGCTTTCGAGAAAGC+TGG - chr3_3:69994104-69994123 Msa0468360:intron 50.0%
AGGACCCCATATGAGAGAAG+TGG - chr3_3:69994687-69994706 Msa0468360:intron 50.0%
GGACCCCATATGAGAGAAGT+GGG - chr3_3:69994688-69994707 Msa0468360:intron 50.0%
TGGCCCACTTCTCTCATATG+GGG + chr3_3:69994694-69994713 None:intergenic 50.0%
TGCTGTTCTACCAGCCCATT+TGG + chr3_3:69994714-69994733 None:intergenic 50.0%
! CGTTGAATACTGGACTAGGG+GGG + chr3_3:69994741-69994760 None:intergenic 50.0%
! CCGTTGAATACTGGACTAGG+GGG + chr3_3:69994742-69994761 None:intergenic 50.0%
CCCCCTAGTCCAGTATTCAA+CGG - chr3_3:69994739-69994758 Msa0468360:intron 50.0%
! CCCGTTGAATACTGGACTAG+GGG + chr3_3:69994743-69994762 None:intergenic 50.0%
CCCCTAGTCCAGTATTCAAC+GGG - chr3_3:69994740-69994759 Msa0468360:intron 50.0%
CGGAATAGGAAAGAGCAGAG+TGG - chr3_3:69994780-69994799 Msa0468360:intron 50.0%
TTGAGAGCAGAAGCTGTCAC+TGG + chr3_3:69995147-69995166 None:intergenic 50.0%
AATTTGGACCATGGAAGCCC+TGG - chr3_3:69995623-69995642 Msa0468360:intron 50.0%
ATTTGGACCATGGAAGCCCT+GGG - chr3_3:69995624-69995643 Msa0468360:intron 50.0%
! CCAAAGCTTTTGTCTGACCC+AGG + chr3_3:69995644-69995663 None:intergenic 50.0%
CCTGGGTCAGACAAAAGCTT+TGG - chr3_3:69995641-69995660 Msa0468360:intron 50.0%
CATTGCACTTCTGGCAGGTT+GGG + chr3_3:69995733-69995752 None:intergenic 50.0%
AACACCATTGCACTTCTGGC+AGG + chr3_3:69995738-69995757 None:intergenic 50.0%
CCGATCTCTCGAATTCTTGG+AGG - chr3_3:69996165-69996184 Msa0468360:intron 50.0%
TGAAGTATAGCGCGGCTGAA+TGG - chr3_3:69996390-69996409 Msa0468360:intron 50.0%
GAAGTATAGCGCGGCTGAAT+GGG - chr3_3:69996391-69996410 Msa0468360:intron 50.0%
!! GCCATATCGGCTCTTTCCTT+TGG + chr3_3:69996914-69996933 None:intergenic 50.0%
GGAAAGAGCCGATATGGCAA+TGG - chr3_3:69996916-69996935 Msa0468360:intron 50.0%
GGCCCTTTAGTGACAGTGTT+CGG - chr3_3:69997034-69997053 Msa0468360:intron 50.0%
! TTTTCACAGGGCAGCTCATG+AGG - chr3_3:69997176-69997195 Msa0468360:CDS 50.0%
ATGCACGATTGGGTGAGGTA+TGG - chr3_3:69997268-69997287 Msa0468360:CDS 50.0%
GAGAATACCAGCGTGTAGGT+AGG - chr3_3:69997531-69997550 Msa0468360:intron 50.0%
TCATGTCGAATCTCTGCCCC+CGG - chr3_3:69992197-69992216 Msa0468360:CDS 55.0%
TCGTTTACCGGGAAGGTTCC+GGG + chr3_3:69992218-69992237 None:intergenic 55.0%
GGAACCTTCCCGGTAAACGA+TGG - chr3_3:69992218-69992237 Msa0468360:CDS 55.0%
AGCTGCCTCATGCATGCGTA+TGG + chr3_3:69993003-69993022 None:intergenic 55.0%
GCATGAGGCAGCTATTGCAG+GGG - chr3_3:69993010-69993029 Msa0468360:intron 55.0%
CATGAGGCAGCTATTGCAGG+GGG - chr3_3:69993011-69993030 Msa0468360:intron 55.0%
!! TGGCTCACCTGGTGGGTTAT+TGG + chr3_3:69993394-69993413 None:intergenic 55.0%
TAACCCACCAGGTGAGCCAA+AGG - chr3_3:69993395-69993414 Msa0468360:intron 55.0%
ATGGCAATGACGGTGAAGGG+GGG - chr3_3:69993834-69993853 Msa0468360:intron 55.0%
TTCTTCGTTCAAGCCGAGCC+AGG - chr3_3:69994006-69994025 Msa0468360:intron 55.0%
CCCAATATCTCCTCCTGGCT+CGG + chr3_3:69994022-69994041 None:intergenic 55.0%
CCGAGCCAGGAGGAGATATT+GGG - chr3_3:69994019-69994038 Msa0468360:intron 55.0%
CTAGAAGCTATGCTGGGTGG+AGG - chr3_3:69994042-69994061 Msa0468360:intron 55.0%
ATGAGCAGCAGATGGCTGTG+CGG + chr3_3:69994078-69994097 None:intergenic 55.0%
ATGGGCAACTACCAGCTCGA+TGG + chr3_3:69994275-69994294 None:intergenic 55.0%
CTCTCTCACTCTCTGCCTCA+TGG + chr3_3:69994821-69994840 None:intergenic 55.0%
!! CTGATGGAGCTTGGCTCTGT+TGG - chr3_3:69994955-69994974 Msa0468360:intron 55.0%
CCATTGCACTTCTGGCAGGT+TGG + chr3_3:69995734-69995753 None:intergenic 55.0%
! CCAACCTGCCAGAAGTGCAA+TGG - chr3_3:69995731-69995750 Msa0468360:intron 55.0%
TTACACAGCAGGGACGCTGA+TGG + chr3_3:69997416-69997435 None:intergenic 55.0%
CGACATTCCTACCTACACGC+TGG + chr3_3:69997541-69997560 None:intergenic 55.0%
GTTTACCGGGAAGGTTCCGG+GGG + chr3_3:69992216-69992235 None:intergenic 60.0%
CGTTTACCGGGAAGGTTCCG+GGG + chr3_3:69992217-69992236 None:intergenic 60.0%
! GTGCCTTTGGCTCACCTGGT+GGG + chr3_3:69993401-69993420 None:intergenic 60.0%
CACCAGGTGAGCCAAAGGCA+CGG - chr3_3:69993400-69993419 Msa0468360:intron 60.0%
TTCGTTCAAGCCGAGCCAGG+AGG - chr3_3:69994009-69994028 Msa0468360:intron 60.0%
GCCGAGCCAGGAGGAGATAT+TGG - chr3_3:69994018-69994037 Msa0468360:intron 60.0%
GGGCTAGAAGCTATGCTGGG+TGG - chr3_3:69994039-69994058 Msa0468360:intron 60.0%
TTCAGGCTGCACCATCGAGC+TGG - chr3_3:69994261-69994280 Msa0468360:intron 60.0%
GAGAAGTGGGCCAAATGGGC+TGG - chr3_3:69994701-69994720 Msa0468360:intron 60.0%
TGTCTGACCCAGGGCTTCCA+TGG + chr3_3:69995634-69995653 None:intergenic 60.0%
! GCACTTCTGGCAGGTTGGGA+TGG + chr3_3:69995729-69995748 None:intergenic 60.0%
!! GTGGAGCACCGTGGAGGAGT+CGG - chr3_3:69991618-69991637 Msa0468360:three_prime_UTR 65.0%
! CGTGCCTTTGGCTCACCTGG+TGG + chr3_3:69993402-69993421 None:intergenic 65.0%
! GACCGTGCCTTTGGCTCACC+TGG + chr3_3:69993405-69993424 None:intergenic 65.0%
CACAGGGCAGCTCATGAGGC+TGG - chr3_3:69997180-69997199 Msa0468360:CDS 65.0%
CTCTGCCCCCGGAACCTTCC+CGG - chr3_3:69992208-69992227 Msa0468360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69991613 69997824 69991613 ID=Msa0468360;Name=Msa0468360
chr3_3 mRNA 69991613 69997824 69991613 ID=Msa0468360-mRNA-1;Parent=Msa0468360;Name=Msa0468360-mRNA-1;_AED=0.25;_eAED=0.25;_QI=115|1|1|1|1|0.9|10|389|423
chr3_3 exon 69991613 69992052 69991613 ID=Msa0468360-mRNA-1:exon:16834;Parent=Msa0468360-mRNA-1
chr3_3 exon 69992153 69992252 69992153 ID=Msa0468360-mRNA-1:exon:16833;Parent=Msa0468360-mRNA-1
chr3_3 exon 69992423 69992550 69992423 ID=Msa0468360-mRNA-1:exon:16832;Parent=Msa0468360-mRNA-1
chr3_3 exon 69993668 69993832 69993668 ID=Msa0468360-mRNA-1:exon:16831;Parent=Msa0468360-mRNA-1
chr3_3 exon 69995042 69995171 69995042 ID=Msa0468360-mRNA-1:exon:16830;Parent=Msa0468360-mRNA-1
chr3_3 exon 69995275 69995435 69995275 ID=Msa0468360-mRNA-1:exon:16829;Parent=Msa0468360-mRNA-1
chr3_3 exon 69996032 69996077 69996032 ID=Msa0468360-mRNA-1:exon:16828;Parent=Msa0468360-mRNA-1
chr3_3 exon 69996938 69997003 69996938 ID=Msa0468360-mRNA-1:exon:16827;Parent=Msa0468360-mRNA-1
chr3_3 exon 69997095 69997474 69997095 ID=Msa0468360-mRNA-1:exon:16826;Parent=Msa0468360-mRNA-1
chr3_3 exon 69997665 69997824 69997665 ID=Msa0468360-mRNA-1:exon:16825;Parent=Msa0468360-mRNA-1
chr3_3 five_prime_UTR 69997710 69997824 69997710 ID=Msa0468360-mRNA-1:five_prime_utr;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69997665 69997709 69997665 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69997095 69997474 69997095 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69996938 69997003 69996938 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69996032 69996077 69996032 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69995275 69995435 69995275 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69995042 69995171 69995042 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69993668 69993832 69993668 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69992423 69992550 69992423 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69992153 69992252 69992153 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 CDS 69992002 69992052 69992002 ID=Msa0468360-mRNA-1:cds;Parent=Msa0468360-mRNA-1
chr3_3 three_prime_UTR 69991613 69992001 69991613 ID=Msa0468360-mRNA-1:three_prime_utr;Parent=Msa0468360-mRNA-1
Gene Sequence

>Msa0468360

ATGTTATTATTTTCAATTTCAATGTCTCCTTCTTCCTCTCTCATCTCCTTTGTATTTGCAAGGAAACTGCTAGGAACTATTATAACAGGCATCTTCCTTCCTTTTCTTGTTTCCACATTAACCCTTCCTTACTCTCTGCTTTATTTCACTAACTCCATCTTTTTCATTTTCAATCTCATAGATATTGCTTGCCTGAGTTCAACAGCTCAAAGTTGGAACTTAGCACCAAAAGGAGGACGGTTTATATCTTTTAAGCGCGGTGCAAGGTTCGTGCAAACATCATGTCGAATCTCTGCCCCCGGAACCTTCCCGGTAAACGATGGAAAAGCTCAGACTAATGTCATGAGGGATAAAAAGGTAGTTCCTGATGCAGATCCTCCTACTACCAAAGATGTCAACCTTCTGTATGATTTTTTTGAAAAAAGTACCAAGCTCCTTGTATTGACTGGAGCTGGAATCAGTACAGAATGTGGTATCCCTGACTATAGAAGCCCTAATGGTGCTTATAGTTCTGGTTTCAGACCAATAACCCACCAGGAGTTTCTTCGTTCAAGCCGAGCCAGGAGGAGATATTGGGCTAGAAGCTATGCTGGGTGGAGGCAGTTTACTGCCGCACAGCCATCTGCTGCTCATTGTGCTTTGGCAGCTTTCGAGAAAGCTGGCCGAATTGATTTTATGGTTACCCAAAATGTCGATAGGCTGCACCATCGAGCTGGTAGTTGCCCATTAGAATTACATGGGACTGTATATACTGTAATTTGTATAGATTGTGGACACTCTCTTTGTAGAAGCTTATTTCAGGACCAGTTGAAGTCCCTTAATCCAAAGTGGGCAGAAGCAATTGAAAATTTGGACCATGGAAGCCCTGGGTCAGACAAAAGCTTTGGAATGAAACAAAGGCCTGATGGTGATATTGAGATTGACGAAAAATTTTGGGAGGAGGATTTTACCATCCCAACCTGCCAGAAGTGCAATGGTGTTCTCAAACCTGATGTTGTCTTCTTCGGTGATAATGTTCCAAAGGAAAGAGCCGATATGGCAATGGAAGCATCTAGAAGTTGTGATGCTTTTCTTGTACTAGGGTCGTCTGTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAGGCTGGTGCAGCTACTGCAATCGTCAATGTAGGTGTGACACGTGCTGATGATTTTGTGCCCTTGAAAATCAATGCACGATTGGGTGAGATATTGCCAAGAGTACTTGACATGGGATCCATCAGCGTCCCTGCTGTGTAA

Protein sequence

>Msa0468360

MLLFSISMSPSSSLISFVFARKLLGTIITGIFLPFLVSTLTLPYSLLYFTNSIFFIFNLIDIACLSSTAQSWNLAPKGGRFISFKRGARFVQTSCRISAPGTFPVNDGKAQTNVMRDKKVVPDADPPTTKDVNLLYDFFEKSTKLLVLTGAGISTECGIPDYRSPNGAYSSGFRPITHQEFLRSSRARRRYWARSYAGWRQFTAAQPSAAHCALAAFEKAGRIDFMVTQNVDRLHHRAGSCPLELHGTVYTVICIDCGHSLCRSLFQDQLKSLNPKWAEAIENLDHGSPGSDKSFGMKQRPDGDIEIDEKFWEEDFTIPTCQKCNGVLKPDVVFFGDNVPKERADMAMEASRSCDAFLVLGSSVMTMSAFRLVRAAHEAGAATAIVNVGVTRADDFVPLKINARLGEILPRVLDMGSISVPAV*