AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0457070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457070 MtrunA17_Chr3g0104361 97.308 520 10 1 1 520 1 516 0.0 1019
Msa0457070 MtrunA17_Chr8g0348761 75.000 468 109 3 61 520 121 588 0.0 733
Msa0457070 MtrunA17_Chr7g0247871 79.215 433 88 1 90 520 102 534 0.0 733
Msa0457070 MtrunA17_Chr7g0241591 37.352 506 312 4 18 519 2 506 6.22e-113 344
Msa0457070 MtrunA17_Chr4g0064801 38.269 520 294 12 19 516 10 524 1.07e-110 339
Msa0457070 MtrunA17_Chr5g0429461 41.045 402 230 2 124 518 189 590 1.77e-95 301
Msa0457070 MtrunA17_Chr4g0013731 37.868 441 246 7 107 520 4 443 3.73e-83 265
Msa0457070 MtrunA17_Chr2g0290941 84.091 132 21 0 352 483 1 132 1.55e-77 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457070 AT2G29650.1 76.628 522 110 4 1 520 1 512 0.0 779
Msa0457070 AT4G00370.1 76.703 455 102 2 70 520 87 541 0.0 732
Msa0457070 AT2G29650.3 87.310 394 50 0 127 520 7 400 0.0 710
Msa0457070 AT2G29650.4 87.692 390 48 0 131 520 1 390 0.0 704
Msa0457070 AT2G29650.2 72.059 408 102 4 1 406 1 398 0.0 560
Msa0457070 AT2G38060.1 39.563 503 282 8 37 518 10 511 1.74e-112 343
Msa0457070 AT5G20380.1 42.417 422 233 7 102 516 90 508 6.72e-106 327
Msa0457070 AT3G46980.1 39.787 470 270 5 62 518 58 527 1.44e-105 326
Msa0457070 AT3G46980.3 39.787 470 270 5 62 518 58 527 1.76e-105 326
Msa0457070 AT5G20380.2 42.417 422 233 7 102 516 142 560 2.54e-105 327
Msa0457070 AT3G46980.4 39.787 470 270 5 62 518 106 575 4.83e-105 326
Msa0457070 AT2G38060.2 38.976 449 253 7 37 465 10 457 3.49e-95 300
Msa0457070 AT3G46980.5 40.634 347 198 3 180 518 1 347 5.90e-83 262
Msa0457070 AT3G46980.7 40.634 347 198 3 180 518 1 347 5.90e-83 262
Msa0457070 AT3G46980.8 40.634 347 198 3 180 518 1 347 6.80e-83 261
Msa0457070 AT3G46980.2 40.634 347 198 3 180 518 1 347 6.80e-83 261
Msa0457070 AT5G44370.1 36.322 435 246 7 108 520 7 432 1.67e-80 258
Msa0457070 AT3G46980.6 38.298 282 166 3 245 518 2 283 9.45e-60 199

Find 157 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAATTTCTGCAAATTT+TGG 0.155639 3_3:-51443627 Msa0457070:CDS
TATGAATTTCCCACCAAATA+TGG 0.180418 3_3:+51441904 None:intergenic
TAGTACAGTCTTCTTTCTTT+TGG 0.193133 3_3:-51445299 Msa0457070:CDS
TGAATAATATTCTGTCAAAA+TGG 0.210887 3_3:-51444846 Msa0457070:CDS
GGCAAAAGTGGGACACTATC+AGG 0.253332 3_3:+51444376 None:intergenic
ATGCAAACAGTTGGGTTTCT+TGG 0.260195 3_3:-51443448 Msa0457070:CDS
TCCTTCTTCCAAGGCCAAAA+AGG 0.279760 3_3:+51441976 None:intergenic
TGCAGATTGCTGGTGGAATA+TGG 0.288175 3_3:-51445167 Msa0457070:intron
CCTTTCCTGATTCACCAGTA+TGG 0.295712 3_3:-51444739 Msa0457070:CDS
AAGTTCAATCTTACAGAATC+TGG 0.297006 3_3:-51443678 Msa0457070:CDS
GGAGTGCTGGCTGGTGTCCT+TGG 0.339650 3_3:-51442572 Msa0457070:CDS
ATAACAATAACCCATCTCTT+AGG 0.357009 3_3:+51446586 None:intergenic
CGTGACAAAGTATCAATTAT+CGG 0.358703 3_3:+51442158 None:intergenic
AATCCACTTACAGAATATCT+AGG 0.360361 3_3:+51442744 None:intergenic
GAACATGAAAATATACAATA+AGG 0.360434 3_3:+51441933 None:intergenic
GGTTTCAGTTGGGCTATATT+TGG 0.362452 3_3:-51442244 Msa0457070:CDS
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3_3:-51445040 Msa0457070:CDS
GTTTGGCAGCTACCGGAGTT+AGG 0.372393 3_3:+51445079 None:intergenic
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3_3:+51445062 None:intergenic
ATCTAGGGGCTATATCTTGA+TGG 0.391646 3_3:+51442760 None:intergenic
GCCATCCATACTGGTGAATC+AGG 0.393766 3_3:+51444734 None:intergenic
TATTTCCTTCACAGGTTCCT+TGG 0.393829 3_3:+51444437 None:intergenic
AGATACTTGTTGCAGATTGC+TGG 0.402333 3_3:-51445177 Msa0457070:intron
TTGGTTCTCTAGGAACAGTT+TGG 0.409152 3_3:-51444693 Msa0457070:CDS
TGAATGGTTGAGGTTTGTTC+TGG 0.413113 3_3:+51446810 None:intergenic
CAATGTCAGCAGAGTACAAC+TGG 0.414950 3_3:-51445341 Msa0457070:CDS
ATCCAATACTGCTGGAGTGC+TGG 0.415339 3_3:-51442585 Msa0457070:CDS
TGTCACAAAATTGATGTGTT+TGG 0.419451 3_3:+51441834 None:intergenic
GGAGGGGAAGAGGGAAGGTG+TGG 0.421482 3_3:-51446753 Msa0457070:CDS
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3_3:-51445033 Msa0457070:CDS
ACCTGTGAAGGAAATACCTT+GGG 0.422628 3_3:-51444430 Msa0457070:CDS
TAAGAAAGTAGTAAGTGGTT+TGG 0.423850 3_3:-51446665 Msa0457070:CDS
CCCCAAGGTATTTCCTTCAC+AGG 0.432539 3_3:+51444429 None:intergenic
ACACTGATGGCCATCCATAC+TGG 0.434066 3_3:+51444725 None:intergenic
AGCCAGCACTCCAGCAGTAT+TGG 0.437148 3_3:+51442583 None:intergenic
TTTGTCGAAACCACCGGTCT+GGG 0.438410 3_3:-51444400 Msa0457070:CDS
AAGAAGTTGATTGCTACAAA+TGG 0.439320 3_3:-51444465 Msa0457070:CDS
ACTCCGGTAGCTGCCAAACT+TGG 0.440722 3_3:-51445075 Msa0457070:CDS
GAACTTTCATTCTTCTTACA+TGG 0.440920 3_3:-51444344 Msa0457070:CDS
GGTGATGATGTTGAGGTAGA+AGG 0.444357 3_3:-51446640 Msa0457070:CDS
GTCCTTGGAACAGCAGCAAC+AGG 0.445368 3_3:-51442557 Msa0457070:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3_3:-51444845 Msa0457070:CDS
TGCAGATAATGCAAACAGTT+GGG 0.451193 3_3:-51443456 Msa0457070:intron
CTTACTTGATTATAGTATGT+TGG 0.454637 3_3:+51444318 None:intergenic
ATGAATTTCCCACCAAATAT+GGG 0.454669 3_3:+51441905 None:intergenic
ACGGAGAAGGTGAATGGTTG+AGG 0.454848 3_3:+51446800 None:intergenic
TTTGGCCTTGGAAGAAGGAT+TGG 0.456756 3_3:-51441972 Msa0457070:three_prime_UTR
TTGCAGATAATGCAAACAGT+TGG 0.460476 3_3:-51443457 Msa0457070:intron
TTCCCCTCCGGTGACACAGC+AGG 0.465843 3_3:+51446767 None:intergenic
CTGTGTCACCGGAGGGGAAG+AGG 0.467777 3_3:-51446763 Msa0457070:CDS
ATGTACCTTGGATCGGTCAC+TGG 0.477619 3_3:-51444775 Msa0457070:CDS
ATCCACTTACAGAATATCTA+GGG 0.477960 3_3:+51442745 None:intergenic
CTCGGTCTATCCAATACTGC+TGG 0.479482 3_3:-51442593 Msa0457070:CDS
CATTGCACCTGCTGTGTCAC+CGG 0.479768 3_3:-51446774 Msa0457070:CDS
TTCCCCAGTTGTGGCAAAAG+TGG 0.480489 3_3:+51444364 None:intergenic
ACACCTTCCCTCTTCCCCTC+CGG 0.482102 3_3:+51446755 None:intergenic
TAGCATTTGGCGTTATTTGG+TGG 0.483461 3_3:-51445116 Msa0457070:CDS
GCAGATTGCTGGTGGAATAT+GGG 0.485868 3_3:-51445166 Msa0457070:intron
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3_3:-51444872 Msa0457070:intron
CCTTGGATCGGTCACTGGAT+TGG 0.489429 3_3:-51444770 Msa0457070:CDS
TCATACTTACTTGATGCCTC+TGG 0.490752 3_3:+51446703 None:intergenic
CCCGAGGTGTATCTGTTACA+AGG 0.491771 3_3:-51443578 Msa0457070:CDS
AGTTGAGTTAAGAAGAAAGC+AGG 0.501347 3_3:+51443424 None:intergenic
GTTGTGTATGACTTGCAGTC+AGG 0.504023 3_3:-51443371 Msa0457070:intron
GTGAATCAGGAAAGGTGAAA+AGG 0.509896 3_3:+51444747 None:intergenic
ACTGACGCATTCTCTCAGTC+TGG 0.509935 3_3:-51442795 Msa0457070:CDS
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3_3:+51446874 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3_3:+51446781 None:intergenic
AATCCAAGTTTGGCAGCTAC+CGG 0.516950 3_3:+51445072 None:intergenic
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3_3:-51445039 Msa0457070:CDS
GTTCATAAGAAAGTAGTAAG+TGG 0.520316 3_3:-51446670 Msa0457070:CDS
AAGGAACAAGCTCTTCTCCT+TGG 0.521751 3_3:-51446621 Msa0457070:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3_3:+51444853 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3_3:+51445048 None:intergenic
TCCTGATTCACCAGTATGGA+TGG 0.522690 3_3:-51444735 Msa0457070:CDS
GTCAAAATGGGTTCCTGTGG+CGG 0.524511 3_3:-51444833 Msa0457070:CDS
TGCACCTGCTGTGTCACCGG+AGG 0.526391 3_3:-51446771 Msa0457070:CDS
CACCAATTCCCATGAATGCA+CGG 0.527914 3_3:+51445031 None:intergenic
AATACTGCTGGAGTGCTGGC+TGG 0.529375 3_3:-51442581 Msa0457070:CDS
TCAGTTGGGCTATATTTGGT+CGG 0.544903 3_3:-51442240 Msa0457070:CDS
GAGAAGTAGATCATTAGCTC+TGG 0.544905 3_3:-51444809 Msa0457070:CDS
TCACCGGAGGGGAAGAGGGA+AGG 0.546416 3_3:-51446758 Msa0457070:CDS
AACCTGTGAAGGAAATACCT+TGG 0.548334 3_3:-51444431 Msa0457070:CDS
GCACCTGCTGTGTCACCGGA+GGG 0.550546 3_3:-51446770 Msa0457070:CDS
GATCTACTTCTCTCCGCCAC+AGG 0.551084 3_3:+51444820 None:intergenic
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3_3:-51446701 Msa0457070:CDS
GAACAAGCTCTTCTCCTTGG+TGG 0.552276 3_3:-51446618 Msa0457070:CDS
AACAAGCTCTTCTCCTTGGT+GGG 0.552346 3_3:-51446617 Msa0457070:CDS
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3_3:+51444355 None:intergenic
GTATACAGTGGTATGTACCT+TGG 0.554978 3_3:-51444787 Msa0457070:CDS
CAGTTGTACTCTGCTGACAT+TGG 0.556876 3_3:+51445342 None:intergenic
CCACATTGATTCTCCTGTGG+TGG 0.558004 3_3:-51443398 Msa0457070:CDS
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3_3:+51446775 None:intergenic
CGGAGTTAGGATTGTGGCAA+CGG 0.561005 3_3:+51445092 None:intergenic
ATCTGTTACAAGGGTTCGCA+AGG 0.562047 3_3:-51443568 Msa0457070:intron
AAAGTAGTAAGTGGTTTGGA+TGG 0.562988 3_3:-51446661 Msa0457070:CDS
TTGGGGATACCTCCTCACTC+AGG 0.564095 3_3:-51445280 Msa0457070:intron
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3_3:-51446726 Msa0457070:CDS
TCTTCTCAGGGGATATTGCT+CGG 0.566814 3_3:-51442611 Msa0457070:intron
CTCGAGTACTTTCTCACAGA+AGG 0.567111 3_3:-51442117 Msa0457070:three_prime_UTR
GGAATATGGGCTGACACAGT+GGG 0.567890 3_3:-51445153 Msa0457070:CDS
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3_3:+51446787 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.569335 3_3:-51443577 Msa0457070:CDS
GAGGGGAAGAGGGAAGGTGT+GGG 0.571726 3_3:-51446752 Msa0457070:CDS
TGTACTAAACCTACAGTGGT+GGG 0.573906 3_3:+51445315 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3_3:+51445032 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3_3:-51446719 Msa0457070:CDS
CTAATCCAATCCTTCTTCCA+AGG 0.576037 3_3:+51441967 None:intergenic
TTCGACAAAATTAATCCCCA+AGG 0.576040 3_3:+51444414 None:intergenic
TGGAATATGGGCTGACACAG+TGG 0.577010 3_3:-51445154 Msa0457070:CDS
TCCCCAGTTGTGGCAAAAGT+GGG 0.577515 3_3:+51444365 None:intergenic
AACTGTTCCTAGAGAACCAA+AGG 0.579562 3_3:+51444696 None:intergenic
TTTGGATGGTGATGATGTTG+AGG 0.582526 3_3:-51446647 Msa0457070:CDS
GACACTATCAGGGCCCAGAC+CGG 0.582554 3_3:+51444387 None:intergenic
CGCATTTCAGGATCATCAAG+TGG 0.585309 3_3:+51444498 None:intergenic
AGGACTACAAGAGAAGAAAA+CGG 0.585903 3_3:-51442094 Msa0457070:three_prime_UTR
CTGTACTAAACCTACAGTGG+TGG 0.586896 3_3:+51445314 None:intergenic
TGTGTCACCGGAGGGGAAGA+GGG 0.587653 3_3:-51446762 Msa0457070:CDS
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3_3:-51446727 Msa0457070:CDS
GCAAAAGTGGGACACTATCA+GGG 0.591083 3_3:+51444377 None:intergenic
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3_3:-51445174 Msa0457070:intron
CAGTGGTATGTACCTTGGAT+CGG 0.607929 3_3:-51444782 Msa0457070:CDS
GCTATATTTGGTCGGAACCG+TGG 0.608376 3_3:-51442232 Msa0457070:CDS
CCAATCCAGTGACCGATCCA+AGG 0.609770 3_3:+51444770 None:intergenic
AACCTGTTGCTGCTGTTCCA+AGG 0.609936 3_3:+51442555 None:intergenic
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3_3:+51446794 None:intergenic
CCCTTGTAACAGATACACCT+CGG 0.616464 3_3:+51443577 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3_3:-51445324 Msa0457070:CDS
GTTGAGTTAAGAAGAAAGCA+GGG 0.621263 3_3:+51443425 None:intergenic
CACCTGCTGTGTCACCGGAG+GGG 0.622296 3_3:-51446769 Msa0457070:CDS
ATTTGGTCGGAACCGTGGTG+TGG 0.624024 3_3:-51442227 Msa0457070:CDS
CCTTGTAACAGATACACCTC+GGG 0.624936 3_3:+51443578 None:intergenic
CGTTGCCACAATCCTAACTC+CGG 0.625961 3_3:-51445091 Msa0457070:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3_3:+51444712 None:intergenic
ACAGGTTACATTCTGCAGCA+TGG 0.629656 3_3:-51442539 Msa0457070:intron
CCATACTGGTGAATCAGGAA+AGG 0.630298 3_3:+51444739 None:intergenic
ACTATCAGGGCCCAGACCGG+TGG 0.630408 3_3:+51444390 None:intergenic
TCTGTCAAAATGGGTTCCTG+TGG 0.632474 3_3:-51444836 Msa0457070:CDS
GAAATTGCCATAGTAAGCCA+TGG 0.638270 3_3:+51443639 None:intergenic
TTTGTTCTGGTACGTGACAG+TGG 0.645348 3_3:+51446823 None:intergenic
CACTTGATGATCCTGAAATG+CGG 0.647130 3_3:-51444497 Msa0457070:CDS
TGCATTCATGGGAATTGGTG+AGG 0.647999 3_3:-51445028 Msa0457070:intron
ATACACAACACAGCCACCAC+AGG 0.650207 3_3:+51443385 None:intergenic
GTACTAAACCTACAGTGGTG+GGG 0.651673 3_3:+51445316 None:intergenic
AGCTACCGGAGTTAGGATTG+TGG 0.654301 3_3:+51445086 None:intergenic
GAGCCACATTGATTCTCCTG+TGG 0.666663 3_3:-51443401 Msa0457070:CDS
AGACTGTACTAAACCTACAG+TGG 0.666932 3_3:+51445311 None:intergenic
GAGTACTTTCTCACAGAAGG+AGG 0.667959 3_3:-51442114 Msa0457070:three_prime_UTR
TCCACTTACAGAATATCTAG+GGG 0.679967 3_3:+51442746 None:intergenic
TGAAACCACATACCTGAGTG+AGG 0.683840 3_3:+51445268 None:intergenic
GCAGACACTCTTGTAACCCG+AGG 0.688978 3_3:-51443594 Msa0457070:CDS
ATATGGGCTGACACAGTGGG+AGG 0.689041 3_3:-51445150 Msa0457070:CDS
CGAGAAAAGGTTCCACACCA+CGG 0.697691 3_3:+51442215 None:intergenic
TCATTAGCTCTGGTATACAG+TGG 0.697906 3_3:-51444799 Msa0457070:CDS
AACCACATACCTGAGTGAGG+AGG 0.707329 3_3:+51445271 None:intergenic
CCACCACAGGAGAATCAATG+TGG 0.729771 3_3:+51443398 None:intergenic
CCTGTGAAGGAAATACCTTG+GGG 0.772599 3_3:-51444429 Msa0457070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACAAAAAAGT+TGG - chr3_3:51442219-51442238 Msa0457070:CDS 10.0%
!! GAATAAATCAAGTATAAATA+TGG + chr3_3:51444930-51444949 None:intergenic 15.0%
!!! TATTTTCAAATTTATATCAC+AGG - chr3_3:51445000-51445019 Msa0457070:intron 15.0%
!! TTATTCTTACTAAATGTTAA+TGG - chr3_3:51446210-51446229 Msa0457070:intron 15.0%
!! ATTACAAAAAAGTTGGATAT+TGG - chr3_3:51442226-51442245 Msa0457070:CDS 20.0%
!! GTTATTACTCTTATTGTAAT+TGG - chr3_3:51442588-51442607 Msa0457070:CDS 20.0%
!! AAGTGAAATGTAATTGATTA+AGG - chr3_3:51442617-51442636 Msa0457070:intron 20.0%
!! AGTGAAATGTAATTGATTAA+GGG - chr3_3:51442618-51442637 Msa0457070:intron 20.0%
!! AAAACAGTTTATAGCTTATA+CGG - chr3_3:51442742-51442761 Msa0457070:intron 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG - chr3_3:51442823-51442842 Msa0457070:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr3_3:51442824-51442843 Msa0457070:intron 20.0%
!! GTTAAAAACTAATCTAAACT+AGG + chr3_3:51442857-51442876 None:intergenic 20.0%
!!! TTAGATTAGTTTTTAACCTA+TGG - chr3_3:51442860-51442879 Msa0457070:intron 20.0%
!! TTTCATTCTTATTAACTAAG+AGG - chr3_3:51442906-51442925 Msa0457070:intron 20.0%
!!! TAAAAAAAACCTTGATGTTT+TGG - chr3_3:51443065-51443084 Msa0457070:intron 20.0%
!! TCAAATCATTACTAATATCA+GGG + chr3_3:51443744-51443763 None:intergenic 20.0%
!! ATCAAATCATTACTAATATC+AGG + chr3_3:51443745-51443764 None:intergenic 20.0%
!! AATGATTTGATTCATATAGT+TGG - chr3_3:51443754-51443773 Msa0457070:intron 20.0%
!!! AACTTCTTTTTTATCTTACT+AGG - chr3_3:51443819-51443838 Msa0457070:intron 20.0%
!!! ACTTCTTTTTTATCTTACTA+GGG - chr3_3:51443820-51443839 Msa0457070:intron 20.0%
!!! TTTTGACAGAATATTATTCA+TGG + chr3_3:51443860-51443879 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG - chr3_3:51443860-51443879 Msa0457070:intron 20.0%
!! GAATAATATTCTGTCAAAAT+GGG - chr3_3:51443861-51443880 Msa0457070:intron 20.0%
!!! CAAGTAAGTTTTTCTTTTTT+TGG - chr3_3:51444403-51444422 Msa0457070:CDS 20.0%
!! AAAGAAATAGTTTCAATTTG+TGG + chr3_3:51444558-51444577 None:intergenic 20.0%
!! GTTTATTAATAGAAATACCT+TGG + chr3_3:51444613-51444632 None:intergenic 20.0%
!! ATGATAATTTCTCAATTCAA+TGG + chr3_3:51444788-51444807 None:intergenic 20.0%
!! AAGAAAAACTAAAAAAGAGA+AGG + chr3_3:51445185-51445204 None:intergenic 20.0%
!! AGGAAAAATTTAAATAAGTG+AGG + chr3_3:51445882-51445901 None:intergenic 20.0%
!!! TATTTAAATTTTTCCTGAAC+AGG - chr3_3:51445886-51445905 Msa0457070:intron 20.0%
!!! ATTTAAATTTTTCCTGAACA+GGG - chr3_3:51445887-51445906 Msa0457070:intron 20.0%
!! AACTCTATTATATCTCTTAA+TGG - chr3_3:51446256-51446275 Msa0457070:intron 20.0%
!! GAACATGAAAATATACAATA+AGG + chr3_3:51446776-51446795 None:intergenic 20.0%
!! TGCTTTTCTTCTATGTAATA+TGG - chr3_3:51442155-51442174 Msa0457070:three_prime_UTR 25.0%
! CATATAAGATGTTGAAAAAG+TGG + chr3_3:51442195-51442214 None:intergenic 25.0%
! GTAGATACACTTACTAATTT+AGG - chr3_3:51442310-51442329 Msa0457070:intron 25.0%
! AACTTAATGAGTTAGTTAGT+TGG + chr3_3:51442495-51442514 None:intergenic 25.0%
! AGGTAAAAATTAAATGTGCA+TGG + chr3_3:51442547-51442566 None:intergenic 25.0%
!!! ATGCACATTTAATTTTTACC+TGG - chr3_3:51442546-51442565 Msa0457070:CDS 25.0%
! ATTCACAATCCTTCATATTA+CGG - chr3_3:51443021-51443040 Msa0457070:intron 25.0%
!!! AGAAACTCTTTTTGAAATAC+TGG - chr3_3:51443103-51443122 Msa0457070:intron 25.0%
!! CTTGTTACTTAGAAGATTTA+TGG - chr3_3:51443172-51443191 Msa0457070:intron 25.0%
! ATTTATGGCTATGTAATCAT+AGG - chr3_3:51443187-51443206 Msa0457070:intron 25.0%
! TTTATGGCTATGTAATCATA+GGG - chr3_3:51443188-51443207 Msa0457070:intron 25.0%
! TGCTTCCTTTATGAAATATA+TGG - chr3_3:51444097-51444116 Msa0457070:intron 25.0%
!!! CCAAATTTCTGTGTTTTTTT+GGG - chr3_3:51444165-51444184 Msa0457070:intron 25.0%
! CTTACTTGATTATAGTATGT+TGG + chr3_3:51444391-51444410 None:intergenic 25.0%
!! ATGATAAGCAAATGTACTTT+TGG - chr3_3:51444526-51444545 Msa0457070:intron 25.0%
! AGAAGATAATCAACCTAAAA+GGG + chr3_3:51444733-51444752 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG + chr3_3:51444734-51444753 None:intergenic 25.0%
! CAATAGATTATGTTACTATC+AGG + chr3_3:51444812-51444831 None:intergenic 25.0%
! ACTTTCTCCAGAAATATTTA+AGG + chr3_3:51445453-51445472 None:intergenic 25.0%
!! GCTTAACATCATCTAAAATT+AGG - chr3_3:51445815-51445834 Msa0457070:intron 25.0%
! ATTTCCTATATATCTTCTCA+GGG - chr3_3:51446083-51446102 Msa0457070:intron 25.0%
! ATGTTAATGGTCAATTATCT+CGG - chr3_3:51446223-51446242 Msa0457070:intron 25.0%
! AATACCAAATTGATACTTCT+CGG + chr3_3:51446316-51446335 None:intergenic 25.0%
!! TAAGATTTCATCGAAGTATT+AGG + chr3_3:51446371-51446390 None:intergenic 25.0%
! AAATAAGTAAAGAGAATGGA+TGG + chr3_3:51446416-51446435 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3_3:51446420-51446439 None:intergenic 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3_3:51446418-51446437 Msa0457070:intron 25.0%
!! ACAAAATTTACCATTTTGTC+CGG + chr3_3:51446674-51446693 None:intergenic 25.0%
GTTCATAAGAAAGTAGTAAG+TGG - chr3_3:51442036-51442055 Msa0457070:three_prime_UTR 30.0%
TAAGAAAGTAGTAAGTGGTT+TGG - chr3_3:51442041-51442060 Msa0457070:three_prime_UTR 30.0%
ATAACAATAACCCATCTCTT+AGG + chr3_3:51442123-51442142 None:intergenic 30.0%
!! ATTTAATTTTTACCTGGTCC+AGG - chr3_3:51442552-51442571 Msa0457070:CDS 30.0%
ACTTATTTGAGCTTATCTAC+CGG - chr3_3:51442654-51442673 Msa0457070:intron 30.0%
!! ATAAGCTGTTTTCAGCTTAT+AGG - chr3_3:51442709-51442728 Msa0457070:intron 30.0%
! GTTTTCAGCTTATAGGATAA+CGG - chr3_3:51442716-51442735 Msa0457070:intron 30.0%
ACTAATCTAAACTAGGCTTA+AGG + chr3_3:51442850-51442869 None:intergenic 30.0%
CTCTAATTAGAAACTTCCAT+AGG + chr3_3:51442879-51442898 None:intergenic 30.0%
! CAGTTATTTCCAAAACATCA+AGG + chr3_3:51443077-51443096 None:intergenic 30.0%
!!! TGATGTTTTGGAAATAACTG+TGG - chr3_3:51443077-51443096 Msa0457070:intron 30.0%
! TTTGCTCTTTTCACATTTAC+AGG - chr3_3:51443318-51443337 Msa0457070:intron 30.0%
! TAGTACAGTCTTCTTTCTTT+TGG - chr3_3:51443407-51443426 Msa0457070:CDS 30.0%
! AGTACAGTCTTCTTTCTTTT+GGG - chr3_3:51443408-51443427 Msa0457070:CDS 30.0%
GGCTTGTAGTTCAAAATTAA+GGG + chr3_3:51443490-51443509 None:intergenic 30.0%
! TGGCTTGTAGTTCAAAATTA+AGG + chr3_3:51443491-51443510 None:intergenic 30.0%
! TAATTTTGAACTACAAGCCA+TGG - chr3_3:51443491-51443510 Msa0457070:intron 30.0%
! TTTTAGCATTTGGCGTTATT+TGG - chr3_3:51443587-51443606 Msa0457070:CDS 30.0%
ACTAATATCAGGGACAATAT+CGG + chr3_3:51443734-51443753 None:intergenic 30.0%
! AAAAAGAAGTTAGCTTCACA+TGG + chr3_3:51443810-51443829 None:intergenic 30.0%
!!! GAACAGTTTGGTTTTGTATA+TGG - chr3_3:51444025-51444044 Msa0457070:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG - chr3_3:51444035-51444054 Msa0457070:intron 30.0%
!! TAAAGGAAGCATTTATGTGA+AGG + chr3_3:51444088-51444107 None:intergenic 30.0%
CGTGTCCATATATTTCATAA+AGG + chr3_3:51444105-51444124 None:intergenic 30.0%
!!! GCCAAATTTCTGTGTTTTTT+TGG - chr3_3:51444164-51444183 Msa0457070:intron 30.0%
CCCAAAAAAACACAGAAATT+TGG + chr3_3:51444168-51444187 None:intergenic 30.0%
! AAGAAGTTGATTGCTACAAA+TGG - chr3_3:51444241-51444260 Msa0457070:intron 30.0%
! ATTAATTTTGTCGAAACCAC+CGG - chr3_3:51444300-51444319 Msa0457070:intron 30.0%
GAACTTTCATTCTTCTTACA+TGG - chr3_3:51444362-51444381 Msa0457070:CDS 30.0%
TGTTTACTAAGTATGCTGTT+TGG - chr3_3:51444428-51444447 Msa0457070:CDS 30.0%
! TAAGCAAATGTACTTTTGGT+TGG - chr3_3:51444530-51444549 Msa0457070:intron 30.0%
!!! CTTTTAGTTTTTACAGTCCA+AGG - chr3_3:51444593-51444612 Msa0457070:intron 30.0%
AAGTTCAATCTTACAGAATC+TGG - chr3_3:51445028-51445047 Msa0457070:intron 30.0%
! ATGGCAATTTCTGCAAATTT+TGG - chr3_3:51445079-51445098 Msa0457070:CDS 30.0%
GAGAAGGAAAAAAAGTTGAA+GGG + chr3_3:51445169-51445188 None:intergenic 30.0%
AGAGAAGGAAAAAAAGTTGA+AGG + chr3_3:51445170-51445189 None:intergenic 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3_3:51445357-51445376 Msa0457070:CDS 30.0%
GTCTCATCCTTAAATATTTC+TGG - chr3_3:51445443-51445462 Msa0457070:intron 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3_3:51445510-51445529 Msa0457070:intron 30.0%
GAGATTATGTTGTCAAATAG+TGG + chr3_3:51445676-51445695 None:intergenic 30.0%
AGTAAGTTCAATGGAACTAA+TGG + chr3_3:51445855-51445874 None:intergenic 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3_3:51445964-51445983 None:intergenic 30.0%
AATCCACTTACAGAATATCT+AGG + chr3_3:51445965-51445984 None:intergenic 30.0%
CATTTCCTATATATCTTCTC+AGG - chr3_3:51446082-51446101 Msa0457070:intron 30.0%
TTTCCTATATATCTTCTCAG+GGG - chr3_3:51446084-51446103 Msa0457070:intron 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3_3:51446425-51446444 Msa0457070:intron 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3_3:51446426-51446445 Msa0457070:intron 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3_3:51446452-51446471 Msa0457070:intron 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3_3:51446518-51446537 None:intergenic 30.0%
! CGTGACAAAGTATCAATTAT+CGG + chr3_3:51446551-51446570 None:intergenic 30.0%
! TCTTCATCAGAATTTTATGC+CGG - chr3_3:51446652-51446671 Msa0457070:CDS 30.0%
! GGACAAAATGGTAAATTTTG+TGG - chr3_3:51446673-51446692 Msa0457070:CDS 30.0%
! CATGTTCATTTTCCCATATT+TGG - chr3_3:51446789-51446808 Msa0457070:CDS 30.0%
! TTCATTTTCCCATATTTGGT+GGG - chr3_3:51446793-51446812 Msa0457070:CDS 30.0%
ATGAATTTCCCACCAAATAT+GGG + chr3_3:51446804-51446823 None:intergenic 30.0%
TATGAATTTCCCACCAAATA+TGG + chr3_3:51446805-51446824 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + chr3_3:51446875-51446894 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr3_3:51441844-51441863 None:intergenic 35.0%
! ATGTTAAGTCTGAGAAGCAT+GGG - chr3_3:51441980-51441999 Msa0457070:three_prime_UTR 35.0%
! AAAGTAGTAAGTGGTTTGGA+TGG - chr3_3:51442045-51442064 Msa0457070:three_prime_UTR 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG - chr3_3:51442110-51442129 Msa0457070:three_prime_UTR 35.0%
!!! CACATATCAGTTTTAGAGTC+CGG + chr3_3:51442379-51442398 None:intergenic 35.0%
AAGTTAGTTGCTAATGTACC+AGG + chr3_3:51442441-51442460 None:intergenic 35.0%
ATAACATAAACAGCTTCTCC+TGG + chr3_3:51442573-51442592 None:intergenic 35.0%
AGTACCATGACTGTTTATTC+CGG + chr3_3:51442676-51442695 None:intergenic 35.0%
AAAAGTTCAGCTAGTGAACA+AGG - chr3_3:51442980-51442999 Msa0457070:intron 35.0%
GCAACTTTACCGTAATATGA+AGG + chr3_3:51443033-51443052 None:intergenic 35.0%
TCCAATACTCCAATGAATTG+CGG - chr3_3:51443211-51443230 Msa0457070:intron 35.0%
ACCTTAGATTAGTATTGCAG+TGG - chr3_3:51443265-51443284 Msa0457070:intron 35.0%
ACCACTGCAATACTAATCTA+AGG + chr3_3:51443269-51443288 None:intergenic 35.0%
! GTACAGTCTTCTTTCTTTTG+GGG - chr3_3:51443409-51443428 Msa0457070:CDS 35.0%
CAATCTGCAACAAGTATCTA+CGG + chr3_3:51443528-51443547 None:intergenic 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG - chr3_3:51443577-51443596 Msa0457070:CDS 35.0%
TAGAAAAGGCAATCCAAGTT+TGG + chr3_3:51443647-51443666 None:intergenic 35.0%
CTAATATCAGGGACAATATC+GGG + chr3_3:51443733-51443752 None:intergenic 35.0%
GACAGAATATTATTCATGGC+CGG + chr3_3:51443856-51443875 None:intergenic 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG - chr3_3:51444003-51444022 Msa0457070:intron 35.0%
! GCAATCAACTTCTTTTCTTC+TGG + chr3_3:51444235-51444254 None:intergenic 35.0%
! TGCTACAAATGGTTTTTCCA+AGG - chr3_3:51444252-51444271 Msa0457070:intron 35.0%
TTCGACAAAATTAATCCCCA+AGG + chr3_3:51444295-51444314 None:intergenic 35.0%
! TTTTCGGCAAAAGAACAAAG+AGG + chr3_3:51444701-51444720 None:intergenic 35.0%
! AAAAGGGAGACTAAGGTTTT+CGG + chr3_3:51444717-51444736 None:intergenic 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG - chr3_3:51444717-51444736 Msa0457070:CDS 35.0%
CACGAATAGAATCAGAAGAA+TGG + chr3_3:51444759-51444778 None:intergenic 35.0%
! GACTATTTTGCGTTTTACCA+TGG - chr3_3:51445050-51445069 Msa0457070:CDS 35.0%
! GCAATTTCTGCAAATTTTGG+TGG - chr3_3:51445082-51445101 Msa0457070:CDS 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG - chr3_3:51445086-51445105 Msa0457070:CDS 35.0%
TTGCAGATAATGCAAACAGT+TGG - chr3_3:51445249-51445268 Msa0457070:intron 35.0%
TGCAGATAATGCAAACAGTT+GGG - chr3_3:51445250-51445269 Msa0457070:intron 35.0%
GTTGAGTTAAGAAGAAAGCA+GGG + chr3_3:51445284-51445303 None:intergenic 35.0%
AGTTGAGTTAAGAAGAAAGC+AGG + chr3_3:51445285-51445304 None:intergenic 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3_3:51445698-51445717 None:intergenic 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3_3:51445963-51445982 None:intergenic 35.0%
! GTAAGTGGATTTATTGTTCC+TGG - chr3_3:51445974-51445993 Msa0457070:intron 35.0%
TATCCCCTGAGAAGATATAT+AGG + chr3_3:51446090-51446109 None:intergenic 35.0%
TTAATGGTCAATTATCTCGG+AGG - chr3_3:51446226-51446245 Msa0457070:intron 35.0%
!! CAATCCGAGAAGTATCAATT+TGG - chr3_3:51446309-51446328 Msa0457070:intron 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3_3:51446451-51446470 Msa0457070:intron 35.0%
AGGACTACAAGAGAAGAAAA+CGG - chr3_3:51446612-51446631 Msa0457070:CDS 35.0%
! GAATTTTATGCCGGACAAAA+TGG - chr3_3:51446661-51446680 Msa0457070:CDS 35.0%
! GTTCATTTTCCCATATTTGG+TGG - chr3_3:51446792-51446811 Msa0457070:CDS 35.0%
GAAGAAGAAGAAGAAGGTGA+TGG + chr3_3:51441838-51441857 None:intergenic 40.0%
! TGAATGGTTGAGGTTTGTTC+TGG + chr3_3:51441899-51441918 None:intergenic 40.0%
GATGTTAAGTCTGAGAAGCA+TGG - chr3_3:51441979-51441998 Msa0457070:three_prime_UTR 40.0%
TCATACTTACTTGATGCCTC+TGG + chr3_3:51442006-51442025 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG - chr3_3:51442005-51442024 Msa0457070:three_prime_UTR 40.0%
! TTTGGATGGTGATGATGTTG+AGG - chr3_3:51442059-51442078 Msa0457070:three_prime_UTR 40.0%
TTAGGAAAAACTTCCCACCA+AGG + chr3_3:51442105-51442124 None:intergenic 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG - chr3_3:51442109-51442128 Msa0457070:three_prime_UTR 40.0%
TAGCTAACACTTCTGATGGA+AGG + chr3_3:51442418-51442437 None:intergenic 40.0%
TCTACCGGAATAAACAGTCA+TGG - chr3_3:51442669-51442688 Msa0457070:intron 40.0%
ACCGCAATTCATTGGAGTAT+TGG + chr3_3:51443215-51443234 None:intergenic 40.0%
TGTACTAAACCTACAGTGGT+GGG + chr3_3:51443394-51443413 None:intergenic 40.0%
AGACTGTACTAAACCTACAG+TGG + chr3_3:51443398-51443417 None:intergenic 40.0%
! AGATACTTGTTGCAGATTGC+TGG - chr3_3:51443529-51443548 Msa0457070:intron 40.0%
TAGCATTTGGCGTTATTTGG+TGG - chr3_3:51443590-51443609 Msa0457070:CDS 40.0%
GAGAAGTAGATCATTAGCTC+TGG - chr3_3:51443897-51443916 Msa0457070:intron 40.0%
!! TCATTAGCTCTGGTATACAG+TGG - chr3_3:51443907-51443926 Msa0457070:intron 40.0%
GTATACAGTGGTATGTACCT+TGG - chr3_3:51443919-51443938 Msa0457070:intron 40.0%
GTGAATCAGGAAAGGTGAAA+AGG + chr3_3:51443962-51443981 None:intergenic 40.0%
CCAAAGGAGTAAAACACTGA+TGG + chr3_3:51443997-51444016 None:intergenic 40.0%
! CCATCAGTGTTTTACTCCTT+TGG - chr3_3:51443994-51444013 Msa0457070:intron 40.0%
AACTGTTCCTAGAGAACCAA+AGG + chr3_3:51444013-51444032 None:intergenic 40.0%
! TTGGTTCTCTAGGAACAGTT+TGG - chr3_3:51444013-51444032 Msa0457070:intron 40.0%
!!! TGTGTTTTTTTGGGACCTGT+AGG - chr3_3:51444174-51444193 Msa0457070:intron 40.0%
! CACTTGATGATCCTGAAATG+CGG - chr3_3:51444209-51444228 Msa0457070:intron 40.0%
! TTTTTCCAAGGAACCTGTGA+AGG - chr3_3:51444264-51444283 Msa0457070:intron 40.0%
TATTTCCTTCACAGGTTCCT+TGG + chr3_3:51444272-51444291 None:intergenic 40.0%
AACCTGTGAAGGAAATACCT+TGG - chr3_3:51444275-51444294 Msa0457070:intron 40.0%
ACCTGTGAAGGAAATACCTT+GGG - chr3_3:51444276-51444295 Msa0457070:intron 40.0%
! ACTAAGTATGCTGTTTGGTG+TGG - chr3_3:51444433-51444452 Msa0457070:CDS 40.0%
TCAACCTAAAAGGGAGACTA+AGG + chr3_3:51444724-51444743 None:intergenic 40.0%
! CGTTTTACCATGGCTTACTA+TGG - chr3_3:51445060-51445079 Msa0457070:CDS 40.0%
GAAATTGCCATAGTAAGCCA+TGG + chr3_3:51445070-51445089 None:intergenic 40.0%
ATGCAAACAGTTGGGTTTCT+TGG - chr3_3:51445258-51445277 Msa0457070:intron 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3_3:51445537-51445556 Msa0457070:intron 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3_3:51445538-51445557 Msa0457070:intron 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3_3:51445745-51445764 None:intergenic 40.0%
TGAGGAACGAGTAAGTTCAA+TGG + chr3_3:51445864-51445883 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3_3:51445949-51445968 None:intergenic 40.0%
! TCAGTGCTACTGAAAATTCC+AGG + chr3_3:51445995-51446014 None:intergenic 40.0%
!! AGAGAATGGATGGTGTCATA+TGG + chr3_3:51446406-51446425 None:intergenic 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3_3:51446441-51446460 Msa0457070:intron 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3_3:51446462-51446481 Msa0457070:intron 40.0%
TCAGTTGGGCTATATTTGGT+CGG - chr3_3:51446466-51446485 Msa0457070:intron 40.0%
CTAATCCAATCCTTCTTCCA+AGG + chr3_3:51446742-51446761 None:intergenic 40.0%
! GAAGAAGAAGAAGGTGATGG+TGG + chr3_3:51441835-51441854 None:intergenic 45.0%
TTTGTTCTGGTACGTGACAG+TGG + chr3_3:51441886-51441905 None:intergenic 45.0%
ATGGAAACGGAGAAGGTGAA+TGG + chr3_3:51441915-51441934 None:intergenic 45.0%
! GGTGATGATGTTGAGGTAGA+AGG - chr3_3:51442066-51442085 Msa0457070:three_prime_UTR 45.0%
AAGGAACAAGCTCTTCTCCT+TGG - chr3_3:51442085-51442104 Msa0457070:three_prime_UTR 45.0%
AACAAGCTCTTCTCCTTGGT+GGG - chr3_3:51442089-51442108 Msa0457070:three_prime_UTR 45.0%
CAGGTAGCTAACACTTCTGA+TGG + chr3_3:51442422-51442441 None:intergenic 45.0%
!! CATCAGAAGTGTTAGCTACC+TGG - chr3_3:51442420-51442439 Msa0457070:intron 45.0%
ACTAGGCTTAAGGCCCTATT+TGG + chr3_3:51442840-51442859 None:intergenic 45.0%
TCTCTCACACCGCAATTCAT+TGG + chr3_3:51443223-51443242 None:intergenic 45.0%
CAGTTGTACTCTGCTGACAT+TGG + chr3_3:51443367-51443386 None:intergenic 45.0%
CAATGTCAGCAGAGTACAAC+TGG - chr3_3:51443365-51443384 Msa0457070:intron 45.0%
GTACTAAACCTACAGTGGTG+GGG + chr3_3:51443393-51443412 None:intergenic 45.0%
CTGTACTAAACCTACAGTGG+TGG + chr3_3:51443395-51443414 None:intergenic 45.0%
TGAAACCACATACCTGAGTG+AGG + chr3_3:51443441-51443460 None:intergenic 45.0%
! TACTTGTTGCAGATTGCTGG+TGG - chr3_3:51443532-51443551 Msa0457070:intron 45.0%
TGCAGATTGCTGGTGGAATA+TGG - chr3_3:51443539-51443558 Msa0457070:intron 45.0%
GCAGATTGCTGGTGGAATAT+GGG - chr3_3:51443540-51443559 Msa0457070:intron 45.0%
AATCCAAGTTTGGCAGCTAC+CGG + chr3_3:51443637-51443656 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG + chr3_3:51443661-51443680 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG - chr3_3:51443666-51443685 Msa0457070:CDS 45.0%
TTAGTTGCCCGTGCATTCAT+GGG - chr3_3:51443667-51443686 Msa0457070:CDS 45.0%
ACCAATTCCCATGAATGCAC+GGG + chr3_3:51443677-51443696 None:intergenic 45.0%
CACCAATTCCCATGAATGCA+CGG + chr3_3:51443678-51443697 None:intergenic 45.0%
TGCATTCATGGGAATTGGTG+AGG - chr3_3:51443678-51443697 Msa0457070:CDS 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG - chr3_3:51443834-51443853 Msa0457070:intron 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG - chr3_3:51443870-51443889 Msa0457070:intron 45.0%
CAGTGGTATGTACCTTGGAT+CGG - chr3_3:51443924-51443943 Msa0457070:intron 45.0%
CCATACTGGTGAATCAGGAA+AGG + chr3_3:51443970-51443989 None:intergenic 45.0%
CCTTTCCTGATTCACCAGTA+TGG - chr3_3:51443967-51443986 Msa0457070:intron 45.0%
TCCTGATTCACCAGTATGGA+TGG - chr3_3:51443971-51443990 Msa0457070:intron 45.0%
CGCATTTCAGGATCATCAAG+TGG + chr3_3:51444211-51444230 None:intergenic 45.0%
! TTTTCTTCTGGCCGCATTTC+AGG + chr3_3:51444223-51444242 None:intergenic 45.0%
CCTGTGAAGGAAATACCTTG+GGG - chr3_3:51444277-51444296 Msa0457070:intron 45.0%
GCAAAAGTGGGACACTATCA+GGG + chr3_3:51444332-51444351 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG + chr3_3:51444354-51444373 None:intergenic 45.0%
!! TGTTTGGTGTGGACGAAGTT+AGG - chr3_3:51444444-51444463 Msa0457070:CDS 45.0%
CCTTGTAACAGATACACCTC+GGG + chr3_3:51445131-51445150 None:intergenic 45.0%
CCCTTGTAACAGATACACCT+CGG + chr3_3:51445132-51445151 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG - chr3_3:51445129-51445148 Msa0457070:CDS 45.0%
ATCTGTTACAAGGGTTCGCA+AGG - chr3_3:51445138-51445157 Msa0457070:CDS 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - chr3_3:51445335-51445354 Msa0457070:CDS 45.0%
AGGATGAGACACACAAGAAC+TGG + chr3_3:51445433-51445452 None:intergenic 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3_3:51445959-51445978 Msa0457070:intron 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3_3:51446095-51446114 Msa0457070:intron 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3_3:51446167-51446186 Msa0457070:intron 45.0%
! TGAAAGATGCACTGCTGCTT+TGG + chr3_3:51446348-51446367 None:intergenic 45.0%
! TCTTTTCACCGGTCGAGAAA+AGG + chr3_3:51446507-51446526 None:intergenic 45.0%
CTCGAGTACTTTCTCACAGA+AGG - chr3_3:51446589-51446608 Msa0457070:CDS 45.0%
GAGTACTTTCTCACAGAAGG+AGG - chr3_3:51446592-51446611 Msa0457070:CDS 45.0%
! GAGCGATTACGAGTCCTTTT+TGG - chr3_3:51446716-51446735 Msa0457070:CDS 45.0%
!! TTACGAGTCCTTTTTGGCCT+TGG - chr3_3:51446722-51446741 Msa0457070:CDS 45.0%
!!! TCCTTTTTGGCCTTGGAAGA+AGG - chr3_3:51446729-51446748 Msa0457070:CDS 45.0%
TCCTTCTTCCAAGGCCAAAA+AGG + chr3_3:51446733-51446752 None:intergenic 45.0%
!! TTTGGCCTTGGAAGAAGGAT+TGG - chr3_3:51446734-51446753 Msa0457070:CDS 45.0%
ACGGAGAAGGTGAATGGTTG+AGG + chr3_3:51441909-51441928 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG + chr3_3:51441922-51441941 None:intergenic 50.0%
CACAGCAGGTGCAATGGAAA+CGG + chr3_3:51441928-51441947 None:intergenic 50.0%
GAACAAGCTCTTCTCCTTGG+TGG - chr3_3:51442088-51442107 Msa0457070:three_prime_UTR 50.0%
TACATGTCTCAGCGTCATGC+CGG - chr3_3:51442357-51442376 Msa0457070:intron 50.0%
! CTTCTGATGGAAGGTGTGTC+TGG + chr3_3:51442409-51442428 None:intergenic 50.0%
TAAACAGCTTCTCCTGGACC+AGG + chr3_3:51442567-51442586 None:intergenic 50.0%
TACCTCCTCACTCAGGTATG+TGG - chr3_3:51443433-51443452 Msa0457070:CDS 50.0%
AACCACATACCTGAGTGAGG+AGG + chr3_3:51443438-51443457 None:intergenic 50.0%
! TGGAATATGGGCTGACACAG+TGG - chr3_3:51443552-51443571 Msa0457070:intron 50.0%
! GGAATATGGGCTGACACAGT+GGG - chr3_3:51443553-51443572 Msa0457070:intron 50.0%
CGGAGTTAGGATTGTGGCAA+CGG + chr3_3:51443617-51443636 None:intergenic 50.0%
CGTTGCCACAATCCTAACTC+CGG - chr3_3:51443615-51443634 Msa0457070:CDS 50.0%
AGCTACCGGAGTTAGGATTG+TGG + chr3_3:51443623-51443642 None:intergenic 50.0%
GGACAATATCGGGTGCAACA+AGG + chr3_3:51443723-51443742 None:intergenic 50.0%
! GTCAAAATGGGTTCCTGTGG+CGG - chr3_3:51443873-51443892 Msa0457070:intron 50.0%
ATGTACCTTGGATCGGTCAC+TGG - chr3_3:51443931-51443950 Msa0457070:intron 50.0%
GCCATCCATACTGGTGAATC+AGG + chr3_3:51443975-51443994 None:intergenic 50.0%
ACACTGATGGCCATCCATAC+TGG + chr3_3:51443984-51444003 None:intergenic 50.0%
! CCCCAAGGTATTTCCTTCAC+AGG + chr3_3:51444280-51444299 None:intergenic 50.0%
! TTTTGTCGAAACCACCGGTC+TGG - chr3_3:51444305-51444324 Msa0457070:intron 50.0%
TTTGTCGAAACCACCGGTCT+GGG - chr3_3:51444306-51444325 Msa0457070:intron 50.0%
GGCAAAAGTGGGACACTATC+AGG + chr3_3:51444333-51444352 None:intergenic 50.0%
!! TGTCCCACTTTTGCCACAAC+TGG - chr3_3:51444338-51444357 Msa0457070:CDS 50.0%
!! GTCCCACTTTTGCCACAACT+GGG - chr3_3:51444339-51444358 Msa0457070:CDS 50.0%
!! TCCCACTTTTGCCACAACTG+GGG - chr3_3:51444340-51444359 Msa0457070:CDS 50.0%
TCCCCAGTTGTGGCAAAAGT+GGG + chr3_3:51444344-51444363 None:intergenic 50.0%
TTCCCCAGTTGTGGCAAAAG+TGG + chr3_3:51444345-51444364 None:intergenic 50.0%
CCCGAGGTGTATCTGTTACA+AGG - chr3_3:51445128-51445147 Msa0457070:CDS 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3_3:51445305-51445324 Msa0457070:CDS 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3_3:51445311-51445330 None:intergenic 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3_3:51445308-51445327 Msa0457070:CDS 50.0%
ATACACAACACAGCCACCAC+AGG + chr3_3:51445324-51445343 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3_3:51445902-51445921 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+TGG - chr3_3:51445911-51445930 Msa0457070:intron 50.0%
CTCGGTCTATCCAATACTGC+TGG - chr3_3:51446113-51446132 Msa0457070:intron 50.0%
ATCCAATACTGCTGGAGTGC+TGG - chr3_3:51446121-51446140 Msa0457070:intron 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3_3:51446154-51446173 None:intergenic 50.0%
GCTATATTTGGTCGGAACCG+TGG - chr3_3:51446474-51446493 Msa0457070:intron 50.0%
CGAGAAAAGGTTCCACACCA+CGG + chr3_3:51446494-51446513 None:intergenic 50.0%
! GTGTGGAACCTTTTCTCGAC+CGG - chr3_3:51446496-51446515 Msa0457070:intron 50.0%
CATTGCACCTGCTGTGTCAC+CGG - chr3_3:51441932-51441951 Msa0457070:three_prime_UTR 55.0%
GCGGTGTGAGAGAGAACAGA+TGG - chr3_3:51443230-51443249 Msa0457070:intron 55.0%
AACTGGAACCCCACCACTGT+AGG - chr3_3:51443382-51443401 Msa0457070:CDS 55.0%
TTGGGGATACCTCCTCACTC+AGG - chr3_3:51443426-51443445 Msa0457070:CDS 55.0%
CTACGGATGCATCAGAGCCA+TGG + chr3_3:51443511-51443530 None:intergenic 55.0%
! ATATGGGCTGACACAGTGGG+AGG - chr3_3:51443556-51443575 Msa0457070:intron 55.0%
GTTTGGCAGCTACCGGAGTT+AGG + chr3_3:51443630-51443649 None:intergenic 55.0%
ACTCCGGTAGCTGCCAAACT+TGG - chr3_3:51443631-51443650 Msa0457070:CDS 55.0%
GCCCGTGCATTCATGGGAAT+TGG - chr3_3:51443673-51443692 Msa0457070:CDS 55.0%
GATCTACTTCTCTCCGCCAC+AGG + chr3_3:51443889-51443908 None:intergenic 55.0%
CCAATCCAGTGACCGATCCA+AGG + chr3_3:51443939-51443958 None:intergenic 55.0%
CCTTGGATCGGTCACTGGAT+TGG - chr3_3:51443936-51443955 Msa0457070:intron 55.0%
GTGGCGAACTATGTGCCTAC+AGG + chr3_3:51444192-51444211 None:intergenic 55.0%
GCAGACACTCTTGTAACCCG+AGG - chr3_3:51445112-51445131 Msa0457070:CDS 55.0%
AGCCAGCACTCCAGCAGTAT+TGG + chr3_3:51446126-51446145 None:intergenic 55.0%
!! AATACTGCTGGAGTGCTGGC+TGG - chr3_3:51446125-51446144 Msa0457070:intron 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3_3:51446149-51446168 Msa0457070:intron 55.0%
ATTTGGTCGGAACCGTGGTG+TGG - chr3_3:51446479-51446498 Msa0457070:intron 55.0%
CGGTGACACAGCAGGTGCAA+TGG + chr3_3:51441934-51441953 None:intergenic 60.0%
TGTGTCACCGGAGGGGAAGA+GGG - chr3_3:51441944-51441963 Msa0457070:three_prime_UTR 60.0%
ACACCTTCCCTCTTCCCCTC+CGG + chr3_3:51441954-51441973 None:intergenic 60.0%
! GAGGGGAAGAGGGAAGGTGT+GGG - chr3_3:51441954-51441973 Msa0457070:three_prime_UTR 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG - chr3_3:51441987-51442006 Msa0457070:three_prime_UTR 60.0%
GACACTATCAGGGCCCAGAC+CGG + chr3_3:51444322-51444341 None:intergenic 60.0%
TGCACCTGCTGTGTCACCGG+AGG - chr3_3:51441935-51441954 Msa0457070:three_prime_UTR 65.0%
GCACCTGCTGTGTCACCGGA+GGG - chr3_3:51441936-51441955 Msa0457070:three_prime_UTR 65.0%
CACCTGCTGTGTCACCGGAG+GGG - chr3_3:51441937-51441956 Msa0457070:three_prime_UTR 65.0%
TTCCCCTCCGGTGACACAGC+AGG + chr3_3:51441942-51441961 None:intergenic 65.0%
CTGTGTCACCGGAGGGGAAG+AGG - chr3_3:51441943-51441962 Msa0457070:three_prime_UTR 65.0%
TCACCGGAGGGGAAGAGGGA+AGG - chr3_3:51441948-51441967 Msa0457070:three_prime_UTR 65.0%
GGAGGGGAAGAGGGAAGGTG+TGG - chr3_3:51441953-51441972 Msa0457070:three_prime_UTR 65.0%
ACTATCAGGGCCCAGACCGG+TGG + chr3_3:51444319-51444338 None:intergenic 65.0%
!! GGAGTGCTGGCTGGTGTCCT+TGG - chr3_3:51446134-51446153 Msa0457070:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 51441799 51446929 51441799 ID=Msa0457070;Name=Msa0457070
chr3_3 mRNA 51441799 51446929 51441799 ID=Msa0457070-mRNA-1;Parent=Msa0457070;Name=Msa0457070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.9|1|1|1|10|392|520
chr3_3 exon 51441799 51442288 51441799 ID=Msa0457070-mRNA-1:exon:9885;Parent=Msa0457070-mRNA-1
chr3_3 exon 51442540 51442624 51442540 ID=Msa0457070-mRNA-1:exon:9884;Parent=Msa0457070-mRNA-1
chr3_3 exon 51442755 51442820 51442755 ID=Msa0457070-mRNA-1:exon:9883;Parent=Msa0457070-mRNA-1
chr3_3 exon 51443372 51443473 51443372 ID=Msa0457070-mRNA-1:exon:9882;Parent=Msa0457070-mRNA-1
chr3_3 exon 51443569 51443706 51443569 ID=Msa0457070-mRNA-1:exon:9881;Parent=Msa0457070-mRNA-1
chr3_3 exon 51444323 51444532 51444323 ID=Msa0457070-mRNA-1:exon:9880;Parent=Msa0457070-mRNA-1
chr3_3 exon 51444672 51444887 51444672 ID=Msa0457070-mRNA-1:exon:9879;Parent=Msa0457070-mRNA-1
chr3_3 exon 51445029 51445184 51445029 ID=Msa0457070-mRNA-1:exon:9878;Parent=Msa0457070-mRNA-1
chr3_3 exon 51445281 51445388 51445281 ID=Msa0457070-mRNA-1:exon:9877;Parent=Msa0457070-mRNA-1
chr3_3 exon 51446546 51446929 51446546 ID=Msa0457070-mRNA-1:exon:9876;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51446546 51446929 51446546 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51445281 51445388 51445281 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51445029 51445184 51445029 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51444672 51444887 51444672 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51444323 51444532 51444323 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51443569 51443706 51443569 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51443372 51443473 51443372 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51442755 51442820 51442755 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51442540 51442624 51442540 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 CDS 51442191 51442288 51442191 ID=Msa0457070-mRNA-1:cds;Parent=Msa0457070-mRNA-1
chr3_3 three_prime_UTR 51441799 51442190 51441799 ID=Msa0457070-mRNA-1:three_prime_utr;Parent=Msa0457070-mRNA-1
Gene Sequence

>Msa0457070

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGGGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGATGATGTTGAGGTAGAAGGAACAAGCTCTTCTCCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTGTGCTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTTATTTGGTGGTCCGTTGCCACAATCCTAACTCCGGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCGGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGTATGTACCTTGGATCGGTCACTGGATTGGCCTTTTCACCTTTCCTGATTCACCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCTGAAATGCGGCCAGAAGAAAAGAAGTTGATTGCTACAAATGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCGGTCTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCATGGCTTACTATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGATAATGCAAACAGTTGGGTTTCTTGGCCCTGCTTTCTTCTTAACTCAACTGAGCCACATTGATTCTCCTGTGGTGGCTGTGTTGTGTATGACTTGCAGTCAGGGAACTGACGCATTCTCTCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGGGATATTGCTCGGTCTATCCAATACTGCTGGAGTGCTGGCTGGTGTCCTTGGAACAGCAGCAACAGGTTACATTCTGCAGCATGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTCGGAACCGTGGTGTGGAACCTTTTCTCGACCGGTGAAAAGATCATAGACTAA

Protein sequence

>Msa0457070

MSSRALLFSFSPPSPSSSSSSSSSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGDDVEVEGTSSSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*