Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387950 | KEH30179.1 | 88.795 | 473 | 17 | 3 | 1 | 442 | 1 | 468 | 0.0 | 847 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387950 | sp|Q43715|TOC75_PEA | 72.632 | 475 | 78 | 7 | 11 | 442 | 8 | 473 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387950 | A0A072UKA2 | 88.795 | 473 | 17 | 3 | 1 | 442 | 1 | 468 | 0.0 | 847 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0387950 | 0.808463 | 3.059111e-50 | -8.615850e-47 |
| Msa0003720 | Msa0387950 | 0.837071 | 6.453182e-57 | -8.615850e-47 |
| Msa0021540 | Msa0387950 | 0.801855 | 7.394408e-49 | -8.615850e-47 |
| Msa0032370 | Msa0387950 | 0.827600 | 1.430832e-54 | -8.615850e-47 |
| Msa0035120 | Msa0387950 | 0.800451 | 1.432266e-48 | -8.615850e-47 |
| Msa0054530 | Msa0387950 | 0.807810 | 4.214899e-50 | -8.615850e-47 |
| Msa0057710 | Msa0387950 | 0.812837 | 3.467659e-51 | -8.615850e-47 |
| Msa0061340 | Msa0387950 | 0.833607 | 4.839277e-56 | -8.615850e-47 |
| Msa0090660 | Msa0387950 | 0.806348 | 8.593140e-50 | -8.615850e-47 |
| Msa0091780 | Msa0387950 | 0.832866 | 7.400241e-56 | -8.615850e-47 |
| Msa0094130 | Msa0387950 | 0.859192 | 4.903055e-63 | -8.615850e-47 |
| Msa0103180 | Msa0387950 | 0.844069 | 9.496129e-59 | -8.615850e-47 |
| Msa0115090 | Msa0387950 | 0.816697 | 4.837789e-52 | -8.615850e-47 |
| Msa0126230 | Msa0387950 | 0.822963 | 1.787882e-53 | -8.615850e-47 |
| Msa0133720 | Msa0387950 | 0.802256 | 6.114413e-49 | -8.615850e-47 |
| Msa0133820 | Msa0387950 | 0.814361 | 1.601937e-51 | -8.615850e-47 |
| Msa0137540 | Msa0387950 | 0.804874 | 1.752146e-49 | -8.615850e-47 |
| Msa0142480 | Msa0387950 | 0.801664 | 8.093285e-49 | -8.615850e-47 |
| Msa0144360 | Msa0387950 | 0.843315 | 1.511211e-58 | -8.615850e-47 |
| Msa0146260 | Msa0387950 | 0.810883 | 9.238402e-51 | -8.615850e-47 |
| Msa0146280 | Msa0387950 | 0.850566 | 1.562842e-60 | -8.615850e-47 |
| Msa0152400 | Msa0387950 | 0.830858 | 2.317941e-55 | -8.615850e-47 |
| Msa0188690 | Msa0387950 | 0.817662 | 2.935355e-52 | -8.615850e-47 |
| Msa0212930 | Msa0387950 | 0.829295 | 5.577159e-55 | -8.615850e-47 |
| Msa0225750 | Msa0387950 | 0.850221 | 1.953986e-60 | -8.615850e-47 |
| Msa0231190 | Msa0387950 | 0.804424 | 2.174729e-49 | -8.615850e-47 |
| Msa0387950 | Msa0390310 | 0.809590 | 1.755520e-50 | -8.615850e-47 |
| Msa0387950 | Msa0410500 | 0.817488 | 3.212459e-52 | -8.615850e-47 |
| Msa0387950 | Msa0410870 | 0.831384 | 1.721025e-55 | -8.615850e-47 |
| Msa0387950 | Msa0423840 | 0.814588 | 1.427370e-51 | -8.615850e-47 |
| Msa0387950 | Msa0427220 | 0.811140 | 8.124793e-51 | -8.615850e-47 |
| Msa0387950 | Msa0431410 | 0.824615 | 7.333798e-54 | -8.615850e-47 |
| Msa0387950 | Msa0432170 | 0.807289 | 5.435241e-50 | -8.615850e-47 |
| Msa0387950 | Msa0468250 | 0.809736 | 1.632505e-50 | -8.615850e-47 |
| Msa0387950 | Msa0483740 | 0.805298 | 1.427955e-49 | -8.615850e-47 |
| Msa0387950 | Msa0510290 | 0.873081 | 1.937713e-67 | -8.615850e-47 |
| Msa0387950 | Msa0518960 | 0.828892 | 6.983309e-55 | -8.615850e-47 |
| Msa0387950 | Msa0531250 | 0.802481 | 5.497716e-49 | -8.615850e-47 |
| Msa0387950 | Msa0576690 | 0.890895 | 6.511677e-74 | -8.615850e-47 |
| Msa0387950 | Msa0606740 | 0.811335 | 7.369573e-51 | -8.615850e-47 |
| Msa0387950 | Msa0619420 | 0.812957 | 3.264540e-51 | -8.615850e-47 |
| Msa0387950 | Msa0643370 | 0.802332 | 5.899288e-49 | -8.615850e-47 |
| Msa0387950 | Msa0659550 | 0.805434 | 1.337646e-49 | -8.615850e-47 |
| Msa0387950 | Msa0663250 | 0.806709 | 7.212036e-50 | -8.615850e-47 |
| Msa0387950 | Msa0677290 | 0.810258 | 1.260592e-50 | -8.615850e-47 |
| Msa0387950 | Msa0687450 | 0.845930 | 2.987158e-59 | -8.615850e-47 |
| Msa0387950 | Msa0689760 | 0.821337 | 4.259381e-53 | -8.615850e-47 |
| Msa0387950 | Msa0701280 | 0.808322 | 3.277924e-50 | -8.615850e-47 |
| Msa0387950 | Msa0702570 | 0.819890 | 9.156392e-53 | -8.615850e-47 |
| Msa0387950 | Msa0716860 | 0.816937 | 4.274701e-52 | -8.615850e-47 |
| Msa0387950 | Msa0723200 | 0.808573 | 2.897981e-50 | -8.615850e-47 |
| Msa0387950 | Msa0734960 | 0.802209 | 6.254557e-49 | -8.615850e-47 |
| Msa0387950 | Msa0740640 | 0.801950 | 7.068001e-49 | -8.615850e-47 |
| Msa0387950 | Msa0749400 | 0.828350 | 9.443126e-55 | -8.615850e-47 |
| Msa0387950 | Msa0757800 | 0.824132 | 9.524765e-54 | -8.615850e-47 |
| Msa0387950 | Msa0766580 | 0.800855 | 1.185071e-48 | -8.615850e-47 |
| Msa0387950 | Msa0790400 | 0.833455 | 5.282194e-56 | -8.615850e-47 |
| Msa0387950 | Msa0800700 | 0.811214 | 7.831092e-51 | -8.615850e-47 |
| Msa0387950 | Msa0861510 | 0.805757 | 1.144469e-49 | -8.615850e-47 |
| Msa0387950 | Msa0861530 | 0.811265 | 7.633111e-51 | -8.615850e-47 |
| Msa0387950 | Msa0861600 | 0.801415 | 9.101591e-49 | -8.615850e-47 |
| Msa0387950 | Msa0908050 | 0.809713 | 1.651613e-50 | -8.615850e-47 |
| Msa0387950 | Msa0930780 | 0.820721 | 5.904302e-53 | -8.615850e-47 |
| Msa0387950 | Msa0944660 | 0.802896 | 4.512519e-49 | -8.615850e-47 |
| Msa0387950 | Msa0969330 | 0.827712 | 1.344963e-54 | -8.615850e-47 |
| Msa0387950 | Msa0970990 | 0.800832 | 1.197770e-48 | -8.615850e-47 |
| Msa0387950 | Msa1010070 | 0.831128 | 1.989366e-55 | -8.615850e-47 |
| Msa0387950 | Msa1020940 | 0.814667 | 1.370722e-51 | -8.615850e-47 |
| Msa0387950 | Msa1031790 | 0.800539 | 1.374794e-48 | -8.615850e-47 |
| Msa0387950 | Msa1041210 | 0.802765 | 4.802524e-49 | -8.615850e-47 |
| Msa0387950 | Msa1050910 | 0.810202 | 1.295759e-50 | -8.615850e-47 |
| Msa0387950 | Msa1059960 | 0.811439 | 6.996662e-51 | -8.615850e-47 |
| Msa0387950 | Msa1072600 | 0.812293 | 4.559890e-51 | -8.615850e-47 |
| Msa0387950 | Msa1095790 | 0.830020 | 3.714621e-55 | -8.615850e-47 |
| Msa0387950 | Msa1127540 | 0.849553 | 3.003834e-60 | -8.615850e-47 |
| Msa0387950 | Msa1127590 | 0.811978 | 5.341036e-51 | -8.615850e-47 |
| Msa0387950 | Msa1129690 | 0.811633 | 6.350708e-51 | -8.615850e-47 |
| Msa0387950 | Msa1140590 | 0.812593 | 3.922001e-51 | -8.615850e-47 |
| Msa0387950 | Msa1144750 | 0.800743 | 1.248745e-48 | -8.615850e-47 |
| Msa0387950 | Msa1165740 | 0.812782 | 3.565495e-51 | -8.615850e-47 |
| Msa0387950 | Msa1179940 | 0.810928 | 9.031930e-51 | -8.615850e-47 |
| Msa0387950 | Msa1179970 | 0.811675 | 6.218738e-51 | -8.615850e-47 |
| Msa0387950 | Msa1182770 | 0.829128 | 6.122721e-55 | -8.615850e-47 |
| Msa0387950 | Msa1201640 | 0.831635 | 1.493021e-55 | -8.615850e-47 |
| Msa0387950 | Msa1201810 | 0.814650 | 1.382629e-51 | -8.615850e-47 |
| Msa0387950 | Msa1204730 | 0.800030 | 1.744815e-48 | -8.615850e-47 |
| Msa0387950 | Msa1211340 | 0.817092 | 3.945546e-52 | -8.615850e-47 |
| Msa0387950 | Msa1219170 | 0.805357 | 1.387987e-49 | -8.615850e-47 |
| Msa0387950 | Msa1220870 | 0.802269 | 6.078041e-49 | -8.615850e-47 |
| Msa0387950 | Msa1224830 | 0.824099 | 9.694885e-54 | -8.615850e-47 |
| Msa0387950 | Msa1254620 | 0.834897 | 2.298035e-56 | -8.615850e-47 |
| Msa0387950 | Msa1259640 | 0.809141 | 2.191354e-50 | -8.615850e-47 |
| Msa0387950 | Msa1265590 | 0.804505 | 2.092190e-49 | -8.615850e-47 |
| Msa0387950 | Msa1274280 | 0.808595 | 2.866582e-50 | -8.615850e-47 |
| Msa0387950 | Msa1276660 | 0.812068 | 5.106650e-51 | -8.615850e-47 |
| Msa0387950 | Msa1282500 | 0.848587 | 5.573254e-60 | -8.615850e-47 |
| Msa0387950 | Msa1286570 | 0.810608 | 1.058949e-50 | -8.615850e-47 |
| Msa0387950 | Msa1329790 | 0.811740 | 6.018041e-51 | -8.615850e-47 |
| Msa0387950 | Msa1332000 | 0.813745 | 2.190578e-51 | -8.615850e-47 |
| Msa0387950 | Msa1341070 | 0.809469 | 1.863016e-50 | -8.615850e-47 |
| Msa0387950 | Msa1364430 | 0.815784 | 7.740038e-52 | -8.615850e-47 |
| Msa0387950 | Msa1374040 | 0.811315 | 7.446662e-51 | -8.615850e-47 |
| Msa0387950 | Msa1374060 | 0.847815 | 9.105508e-60 | -8.615850e-47 |
| Msa0387950 | Msa1377810 | 0.803415 | 3.524153e-49 | -8.615850e-47 |
| Msa0387950 | Msa1382560 | 0.818948 | 1.501602e-52 | -8.615850e-47 |
| Msa0387950 | Msa1406040 | 0.895520 | 8.864372e-76 | -8.615850e-47 |
| Msa0387950 | Msa1411500 | 0.841624 | 4.245799e-58 | -8.615850e-47 |
| Msa0387950 | Msa1411950 | 0.800585 | 1.345049e-48 | -8.615850e-47 |
| Msa0387950 | Msa1418260 | 0.809065 | 2.274308e-50 | -8.615850e-47 |
| Msa0387950 | Msa1420250 | 0.821943 | 3.085397e-53 | -8.615850e-47 |
| Msa0387950 | Msa1426910 | 0.828126 | 1.069124e-54 | -8.615850e-47 |
| Msa0387950 | Msa1435260 | 0.822293 | 2.559878e-53 | -8.615850e-47 |
| Msa0387950 | Msa1439610 | 0.808796 | 2.597277e-50 | -8.615850e-47 |
| Msa0387950 | Msa1443300 | 0.828950 | 6.762084e-55 | -8.615850e-47 |
| Msa0387950 | Msa1443310 | 0.815181 | 1.054387e-51 | -8.615850e-47 |
| Msa0387950 | Msa1446780 | 0.812772 | 3.583652e-51 | -8.615850e-47 |
| Msa0387950 | Msa1450720 | 0.825394 | 4.801042e-54 | -8.615850e-47 |
| Msa0387950 | Msa1459380 | 0.806304 | 8.777588e-50 | -8.615850e-47 |
| Msa0387950 | Msa1461540 | 0.805353 | 1.390708e-49 | -8.615850e-47 |
| Msa0387950 | Msa1464290 | 0.807005 | 6.244410e-50 | -8.615850e-47 |
| Msa0387950 | Msa1466590 | 0.811364 | 7.263680e-51 | -8.615850e-47 |
| Msa0387950 | Msa1467000 | 0.833142 | 6.321307e-56 | -8.615850e-47 |
| Msa0253200 | Msa0387950 | 0.817250 | 3.634338e-52 | -8.615850e-47 |
| Msa0256840 | Msa0387950 | 0.823514 | 1.329773e-53 | -8.615850e-47 |
| Msa0260620 | Msa0387950 | 0.835408 | 1.707823e-56 | -8.615850e-47 |
| Msa0279390 | Msa0387950 | 0.837257 | 5.783259e-57 | -8.615850e-47 |
| Msa0281360 | Msa0387950 | 0.817453 | 3.271760e-52 | -8.615850e-47 |
| Msa0292030 | Msa0387950 | 0.814796 | 1.283839e-51 | -8.615850e-47 |
| Msa0304100 | Msa0387950 | 0.809155 | 2.176428e-50 | -8.615850e-47 |
| Msa0305330 | Msa0387950 | 0.805136 | 1.544305e-49 | -8.615850e-47 |
| Msa0307850 | Msa0387950 | 0.839394 | 1.626489e-57 | -8.615850e-47 |
| Msa0307860 | Msa0387950 | 0.822193 | 2.700921e-53 | -8.615850e-47 |
| Msa0318700 | Msa0387950 | 0.809253 | 2.073429e-50 | -8.615850e-47 |
| Msa0318880 | Msa0387950 | 0.866308 | 3.135758e-65 | -8.615850e-47 |
| Msa0322900 | Msa0387950 | 0.810779 | 9.726270e-51 | -8.615850e-47 |
| Msa0330310 | Msa0387950 | 0.831011 | 2.125229e-55 | -8.615850e-47 |
| Msa0334040 | Msa0387950 | 0.803917 | 2.773260e-49 | -8.615850e-47 |
| Msa0343300 | Msa0387950 | 0.812054 | 5.140639e-51 | -8.615850e-47 |
| Msa0358400 | Msa0387950 | 0.828812 | 7.299822e-55 | -8.615850e-47 |
| Msa0363400 | Msa0387950 | 0.869120 | 3.927454e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387950 | MtrunA17_Chr4g0031981 | 88.795 | 473 | 17 | 3 | 1 | 442 | 1 | 468 | 0.0 | 846 |
| Msa0387950 | MtrunA17_Chr2g0328601 | 61.919 | 344 | 100 | 1 | 116 | 428 | 102 | 445 | 3.10e-152 | 453 |
| Msa0387950 | MtrunA17_Chr3g0121271 | 95.918 | 49 | 1 | 1 | 444 | 491 | 450 | 498 | 5.29e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387950 | AT3G46740.1 | 68.156 | 358 | 79 | 2 | 116 | 442 | 129 | 482 | 4.80e-167 | 492 |
| Msa0387950 | AT1G35860.1 | 42.935 | 184 | 64 | 3 | 267 | 427 | 2 | 167 | 2.04e-36 | 139 |
Find 150 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGTTTATAAAGAGATTA+AGG | 0.210672 | 3_1:-92054755 | Msa0387950:CDS |
| GAATCCCAATCTTGTGATTT+TGG | 0.214936 | 3_1:+92055240 | None:intergenic |
| CTCTTCTACTAGTCTACTTT+TGG | 0.219586 | 3_1:-92053671 | Msa0387950:CDS |
| TTGTGCTCAGTTGTTAATTT+TGG | 0.237097 | 3_1:-92054641 | Msa0387950:intron |
| TACTTCTAGGCCTTGTCTTT+TGG | 0.238382 | 3_1:-92054782 | Msa0387950:CDS |
| GCGGTGAAGGAGGTGATTTC+TGG | 0.263332 | 3_1:-92055302 | Msa0387950:CDS |
| TATGAGTGAAAAGGAGAAAA+TGG | 0.277825 | 3_1:-92054848 | Msa0387950:CDS |
| ACAAACATACACACCTGTTT+TGG | 0.295537 | 3_1:+92054485 | None:intergenic |
| TTCTCCGGAGGTGGCGGCGG+AGG | 0.339863 | 3_1:-92055375 | Msa0387950:CDS |
| TCCGGAGGTGGCGGCGGAGG+TGG | 0.343459 | 3_1:-92055372 | Msa0387950:CDS |
| CGAAACACCAAGACGAAAAT+CGG | 0.346482 | 3_1:-92055129 | Msa0387950:CDS |
| TCGTCGGCGAACGCGGTTGC+TGG | 0.348068 | 3_1:+92055264 | None:intergenic |
| CCAGCACCAATAGGACTTAC+AGG | 0.369992 | 3_1:+92053730 | None:intergenic |
| TTGACAAAACAGCTTCTTCC+GGG | 0.376101 | 3_1:-92054392 | Msa0387950:intron |
| GGAAGTTCTCTTTGAACAAC+AGG | 0.378093 | 3_1:+92054506 | None:intergenic |
| GAAGAGAGCAGAGGCGGCGG+AGG | 0.384279 | 3_1:+92055425 | None:intergenic |
| GGAGGTGGCGGCGGAGGTGG+AGG | 0.397183 | 3_1:-92055369 | Msa0387950:CDS |
| ACTGAGTGGAGTATTGTTCC+TGG | 0.398835 | 3_1:-92054203 | Msa0387950:CDS |
| TTTGACAAAACAGCTTCTTC+CGG | 0.401319 | 3_1:-92054393 | Msa0387950:intron |
| TTCAATTTCTCCGGAGGTGG+CGG | 0.406615 | 3_1:-92055381 | Msa0387950:CDS |
| GACAAGAGAGGGAGTATAAG+AGG | 0.407066 | 3_1:-92054813 | Msa0387950:CDS |
| TTGAATCCGCTAAGTTTGTT+TGG | 0.407816 | 3_1:+92055186 | None:intergenic |
| TCTTCCTCCGGTGGTGGAGG+TGG | 0.410189 | 3_1:-92055345 | Msa0387950:CDS |
| AGCGTTGACGATTTCGTTCG+CGG | 0.412504 | 3_1:-92054956 | Msa0387950:CDS |
| TCCACCTCCGCCGCCACCTC+CGG | 0.412567 | 3_1:+92055371 | None:intergenic |
| CTTCCCTCATTCTTCTCATC+AGG | 0.414103 | 3_1:+92054281 | None:intergenic |
| TTTGGACCTGTAAGTCCTAT+TGG | 0.417869 | 3_1:-92053736 | Msa0387950:CDS |
| AGAGGAGGATTGATACTTCT+AGG | 0.418613 | 3_1:-92054795 | Msa0387950:CDS |
| TCAAAGAGAACTTCCAAAAC+AGG | 0.419638 | 3_1:-92054498 | Msa0387950:intron |
| TCAGTCGAAACCGGTTGAAA+TGG | 0.421087 | 3_1:-92054878 | Msa0387950:CDS |
| CTCCCCGATTTCAATTTCTC+CGG | 0.421890 | 3_1:-92055390 | Msa0387950:CDS |
| AATGTTTGAGAAGGTTGATA+TGG | 0.422128 | 3_1:-92055007 | Msa0387950:CDS |
| GAGAGATGTGGTGGCTGTTA+CGG | 0.424351 | 3_1:+92055556 | None:intergenic |
| ACGAACCAAAATCACAAGAT+TGG | 0.424406 | 3_1:-92055245 | Msa0387950:CDS |
| ATGTATCAATGTAGGGTTGA+TGG | 0.426742 | 3_1:-92054902 | Msa0387950:CDS |
| AGGAGGAGGAGGGGTTGAAA+TGG | 0.429029 | 3_1:+92055584 | None:intergenic |
| TTACGGCGGTGAGGAGGAGG+AGG | 0.430121 | 3_1:+92055573 | None:intergenic |
| AACTTGAGCACGGGTGGTGA+TGG | 0.431835 | 3_1:-92053778 | Msa0387950:CDS |
| ACCTCCGGAGAAATTGAAAT+CGG | 0.434355 | 3_1:+92055386 | None:intergenic |
| CGCTAATGTTCCATCAGCAT+TGG | 0.435932 | 3_1:+92054975 | None:intergenic |
| GAGGAAGAGAGCAGAGGCGG+CGG | 0.437418 | 3_1:+92055422 | None:intergenic |
| GAGGTTTATAAAGAGATTAA+GGG | 0.444103 | 3_1:-92054754 | Msa0387950:CDS |
| GGTAGAACGGTTATGTTAGC+TGG | 0.445300 | 3_1:+92055207 | None:intergenic |
| AGGTTTAGATGTATCAATGT+AGG | 0.447359 | 3_1:-92054910 | Msa0387950:CDS |
| CTGTTACGGCGGTGAGGAGG+AGG | 0.450179 | 3_1:+92055570 | None:intergenic |
| TTAATCTCTTTATAAACCTC+AGG | 0.452420 | 3_1:+92054757 | None:intergenic |
| TCCTCCGGTGGTGGAGGTGG+TGG | 0.454969 | 3_1:-92055342 | Msa0387950:CDS |
| GATTTCAATTTCTCCGGAGG+TGG | 0.457365 | 3_1:-92055384 | Msa0387950:CDS |
| GTATGTGGGAGAAAGCTGAT+AGG | 0.458850 | 3_1:-92054930 | Msa0387950:CDS |
| TAAAGAGTTGGAGCAGAAAT+CGG | 0.460513 | 3_1:-92054237 | Msa0387950:CDS |
| AAGCTTGGTAATGTTGTTGA+AGG | 0.461119 | 3_1:-92054542 | Msa0387950:CDS |
| TGAGATTAAGCTTAAAGAGT+TGG | 0.462130 | 3_1:-92054249 | Msa0387950:CDS |
| TTTCGTTCGCGGAGAGTATG+TGG | 0.462541 | 3_1:-92054945 | Msa0387950:CDS |
| ATATCAGGATCCATTTCAAC+CGG | 0.464958 | 3_1:+92054868 | None:intergenic |
| CCTGTAAGTCCTATTGGTGC+TGG | 0.466516 | 3_1:-92053730 | Msa0387950:CDS |
| CCGGTGGTGGAGGTGGTGGT+TGG | 0.467128 | 3_1:-92055338 | Msa0387950:CDS |
| GGATCTTCCTCCGGTGGTGG+AGG | 0.469677 | 3_1:-92055348 | Msa0387950:CDS |
| AATTTCTCCGGAGGTGGCGG+CGG | 0.471602 | 3_1:-92055378 | Msa0387950:CDS |
| AGAGGAAAGTTGACATTTGA+CGG | 0.473771 | 3_1:+92055524 | None:intergenic |
| AGGAGGAGGGGTTGAAATGG+TGG | 0.475264 | 3_1:+92055587 | None:intergenic |
| CGAACCAAAATCACAAGATT+GGG | 0.476541 | 3_1:-92055244 | Msa0387950:CDS |
| GGAGGATCTTCCTCCGGTGG+TGG | 0.481721 | 3_1:-92055351 | Msa0387950:CDS |
| TGAAATGGTGGTTAAGCGAT+TGG | 0.483381 | 3_1:+92055599 | None:intergenic |
| CCGCGGATTCACTTCAATGT+TGG | 0.485045 | 3_1:+92054304 | None:intergenic |
| TGGAGTATTGTTCCTGGGCG+AGG | 0.491841 | 3_1:-92054197 | Msa0387950:CDS |
| CCTCCGGAGAAATTGAAATC+GGG | 0.491984 | 3_1:+92055387 | None:intergenic |
| TTCGCCGCAAATACCAAAGT+TGG | 0.492832 | 3_1:+92054167 | None:intergenic |
| GTATTGTTCCTGGGCGAGGA+GGG | 0.493554 | 3_1:-92054193 | Msa0387950:CDS |
| GCTAAGTTTGTTTGGTAGAA+CGG | 0.495514 | 3_1:+92055194 | None:intergenic |
| GTTGTTGTTGTTATTATCGT+CGG | 0.496651 | 3_1:+92055500 | None:intergenic |
| GCGAGGAGGGCGTCCAACTT+TGG | 0.496872 | 3_1:-92054180 | Msa0387950:intron |
| GTTGTTTGTGAGGTTGTTGA+AGG | 0.498736 | 3_1:-92054599 | Msa0387950:CDS |
| GGATCCTGATATGAGTGAAA+AGG | 0.500579 | 3_1:-92054857 | Msa0387950:CDS |
| GTTGTTATTATCGTCGGAAG+AGG | 0.505077 | 3_1:+92055506 | None:intergenic |
| TAAGCGATTGGAGGCGAAGA+AGG | 0.507131 | 3_1:+92055611 | None:intergenic |
| AACTTCAATCCAGCACCAAT+AGG | 0.509537 | 3_1:+92053721 | None:intergenic |
| AAGCTGGGAAACAAGCTTTG+AGG | 0.509682 | 3_1:-92054352 | Msa0387950:CDS |
| TCATTCTTCTCATCAGGCCG+CGG | 0.514700 | 3_1:+92054287 | None:intergenic |
| AGTTGACATTTGACGGAGGA+AGG | 0.517719 | 3_1:+92055531 | None:intergenic |
| TTTGAGAAGGTTGATATGGA+AGG | 0.520196 | 3_1:-92055003 | Msa0387950:CDS |
| GTTGATGGGTCAGTCGAAAC+CGG | 0.521835 | 3_1:-92054887 | Msa0387950:CDS |
| TGGCTGTTACGGCGGTGAGG+AGG | 0.524979 | 3_1:+92055567 | None:intergenic |
| GGTTTAGATGTATCAATGTA+GGG | 0.527431 | 3_1:-92054909 | Msa0387950:CDS |
| CATGGATCATGTGTATATGC+AGG | 0.527638 | 3_1:-92053914 | Msa0387950:CDS |
| TGTATCAATGTAGGGTTGAT+GGG | 0.529350 | 3_1:-92054901 | Msa0387950:CDS |
| CCCGATTTCAATTTCTCCGG+AGG | 0.533340 | 3_1:-92055387 | Msa0387950:CDS |
| TCGTCTTGGTGTTTCGATCG+AGG | 0.534927 | 3_1:+92055136 | None:intergenic |
| ACTTGAGCACGGGTGGTGAT+GGG | 0.535349 | 3_1:-92053777 | Msa0387950:CDS |
| TTGTTTGTGAGGTTGTTGAA+GGG | 0.537219 | 3_1:-92054598 | Msa0387950:CDS |
| AAGAGAGGGAGTATAAGAGG+AGG | 0.538246 | 3_1:-92054810 | Msa0387950:CDS |
| GATAGCGACGGTGGCGGTGA+GGG | 0.545268 | 3_1:+92055449 | None:intergenic |
| GTTCTACCAAACAAACTTAG+CGG | 0.546093 | 3_1:-92055192 | Msa0387950:CDS |
| GTTGGACGCCCTCCTCGCCC+AGG | 0.555798 | 3_1:+92054185 | None:intergenic |
| TACGGCGGTGAGGAGGAGGA+GGG | 0.560584 | 3_1:+92055574 | None:intergenic |
| GAAGGGAAAACCAATGCTGA+TGG | 0.561077 | 3_1:-92054985 | Msa0387950:CDS |
| TTGAGAAGGTTGATATGGAA+GGG | 0.561158 | 3_1:-92055002 | Msa0387950:CDS |
| ATCAGTTCTAACTTGAGCAC+GGG | 0.563571 | 3_1:-92053787 | Msa0387950:intron |
| TTTAACAACAACGGCGGTGA+AGG | 0.564862 | 3_1:-92055315 | Msa0387950:CDS |
| ACCACCACCTCCACCACCGG+AGG | 0.567000 | 3_1:+92055341 | None:intergenic |
| ATTGAAATCGGGGAGGGAGT+CGG | 0.570479 | 3_1:+92055398 | None:intergenic |
| CAATGTTGGAAAACAAAGCA+AGG | 0.575395 | 3_1:+92054318 | None:intergenic |
| AATGGTGGTTAAGCGATTGG+AGG | 0.576367 | 3_1:+92055602 | None:intergenic |
| CCAACCACCACCTCCACCAC+CGG | 0.579282 | 3_1:+92055338 | None:intergenic |
| TTCGTTCGCGGAGAGTATGT+GGG | 0.579595 | 3_1:-92054944 | Msa0387950:CDS |
| CTGAGTGGAGTATTGTTCCT+GGG | 0.582646 | 3_1:-92054202 | Msa0387950:CDS |
| AGTATTGTTCCTGGGCGAGG+AGG | 0.583721 | 3_1:-92054194 | Msa0387950:CDS |
| GCGGCCTGATGAGAAGAATG+AGG | 0.586532 | 3_1:-92054285 | Msa0387950:CDS |
| GGAGGAGATAGCGACGGTGG+CGG | 0.588211 | 3_1:+92055443 | None:intergenic |
| ACGGCGGTGAGGAGGAGGAG+GGG | 0.589111 | 3_1:+92055575 | None:intergenic |
| TATCAGTTCTAACTTGAGCA+CGG | 0.590597 | 3_1:-92053788 | Msa0387950:intron |
| CTAGAAAGTTTAGCTACATG+TGG | 0.591287 | 3_1:-92055030 | Msa0387950:CDS |
| CGGCCTGATGAGAAGAATGA+GGG | 0.591730 | 3_1:-92054284 | Msa0387950:CDS |
| AGGTTTATAAAGAGATTAAG+GGG | 0.594005 | 3_1:-92054753 | Msa0387950:CDS |
| GAAGGAAGAAGAAGAAGACA+TGG | 0.595924 | 3_1:+92055629 | None:intergenic |
| TGTTTGTGAGGTTGTTGAAG+GGG | 0.596101 | 3_1:-92054597 | Msa0387950:CDS |
| TAGAAGAGAATGCATAGTGA+AGG | 0.600654 | 3_1:+92053686 | None:intergenic |
| AGCTTGGTAATGTTGTTGAA+GGG | 0.601640 | 3_1:-92054541 | Msa0387950:CDS |
| TACGCGCGAGGTTGTTTGTG+AGG | 0.602411 | 3_1:-92054609 | Msa0387950:CDS |
| AGATGTGGTGGCTGTTACGG+CGG | 0.603703 | 3_1:+92055559 | None:intergenic |
| GGAGGTGGAGGATCTTCCTC+CGG | 0.605595 | 3_1:-92055357 | Msa0387950:CDS |
| GGTGAGGAAGAGAGCAGAGG+CGG | 0.607374 | 3_1:+92055419 | None:intergenic |
| ACCTCAGGAGCCAAAAGACA+AGG | 0.610574 | 3_1:+92054772 | None:intergenic |
| TGGTGGCTGTTACGGCGGTG+AGG | 0.617795 | 3_1:+92055564 | None:intergenic |
| CTCCGGAGAAATTGAAATCG+GGG | 0.619965 | 3_1:+92055388 | None:intergenic |
| CACACGCGCTCAGCTTCAGA+AGG | 0.620020 | 3_1:-92055055 | Msa0387950:CDS |
| GTCGGTGAGGAAGAGAGCAG+AGG | 0.620047 | 3_1:+92055416 | None:intergenic |
| AACAACAACGGCGGTGAAGG+AGG | 0.626206 | 3_1:-92055312 | Msa0387950:CDS |
| GCGCGTGTGTATACACCACC+TGG | 0.629270 | 3_1:+92055069 | None:intergenic |
| GGTGGAGGATCTTCCTCCGG+TGG | 0.632685 | 3_1:-92055354 | Msa0387950:CDS |
| AGTTCTAACTTGAGCACGGG+TGG | 0.632909 | 3_1:-92053784 | Msa0387950:CDS |
| CGGAGGAAGGACGAGAGATG+TGG | 0.636633 | 3_1:+92055544 | None:intergenic |
| AGATAGCGACGGTGGCGGTG+AGG | 0.640755 | 3_1:+92055448 | None:intergenic |
| GGAGAAATTGAAATCGGGGA+GGG | 0.642007 | 3_1:+92055392 | None:intergenic |
| AGGAAGGACGAGAGATGTGG+TGG | 0.643849 | 3_1:+92055547 | None:intergenic |
| CGGCTGAAGTTAGTACTGAG+TGG | 0.644179 | 3_1:-92054217 | Msa0387950:CDS |
| GGTGGTTGGTTTAACAACAA+CGG | 0.648665 | 3_1:-92055324 | Msa0387950:CDS |
| GGCGGAGGAGATAGCGACGG+TGG | 0.648996 | 3_1:+92055440 | None:intergenic |
| AATGTTGGAAAACAAAGCAA+GGG | 0.649560 | 3_1:+92054319 | None:intergenic |
| GATCATGTGTATATGCAGGA+AGG | 0.650405 | 3_1:-92053910 | Msa0387950:CDS |
| CCAACATTGAAGTGAATCCG+CGG | 0.651264 | 3_1:-92054304 | Msa0387950:CDS |
| AATCGGGGAGGGAGTCGGTG+AGG | 0.652729 | 3_1:+92055403 | None:intergenic |
| GACATGGTATCCCTAAAACC+AGG | 0.657656 | 3_1:-92055087 | Msa0387950:CDS |
| TGGCAATCTGAATACGCGCG+AGG | 0.668463 | 3_1:-92054621 | Msa0387950:CDS |
| TACATGTGGAATGTTTGAGA+AGG | 0.671038 | 3_1:-92055016 | Msa0387950:CDS |
| CGGAGAAATTGAAATCGGGG+AGG | 0.675200 | 3_1:+92055391 | None:intergenic |
| TCAATGTTAAAAGTATGACC+CGG | 0.683764 | 3_1:+92054374 | None:intergenic |
| GGCGGCGGAGGAGATAGCGA+CGG | 0.700295 | 3_1:+92055437 | None:intergenic |
| GGAAAGTTGACATTTGACGG+AGG | 0.710253 | 3_1:+92055527 | None:intergenic |
| GGTTGGTTTAACAACAACGG+CGG | 0.712734 | 3_1:-92055321 | Msa0387950:CDS |
| ATGGTATCCCTAAAACCAGG+TGG | 0.758207 | 3_1:-92055084 | Msa0387950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTATATAAAACTAATAT+TGG | - | chr3_1:92055458-92055477 | Msa0387950:CDS | 10.0% |
| !! | TTGTTATATAAAACTAATAT+TGG | - | chr3_1:92055458-92055477 | Msa0387950:CDS | 10.0% |
| !!! | TCAGTTGAATATTCAATTTT+TGG | - | chr3_1:92054717-92054736 | Msa0387950:intron | 20.0% |
| !!! | ATGGTTATTGTTTTTTGATT+TGG | - | chr3_1:92054848-92054867 | Msa0387950:CDS | 20.0% |
| !!! | TCAGTTGAATATTCAATTTT+TGG | - | chr3_1:92054717-92054736 | Msa0387950:intron | 20.0% |
| !!! | ATGGTTATTGTTTTTTGATT+TGG | - | chr3_1:92054848-92054867 | Msa0387950:CDS | 20.0% |
| !!! | AGAAGATTCATTTTTAGACA+TGG | - | chr3_1:92054181-92054200 | Msa0387950:CDS | 25.0% |
| ! | TTAATCTCTTTATAAACCTC+AGG | + | chr3_1:92054530-92054549 | None:intergenic | 25.0% |
| ! | TGAGGTTTATAAAGAGATTA+AGG | - | chr3_1:92054529-92054548 | Msa0387950:CDS | 25.0% |
| ! | GAGGTTTATAAAGAGATTAA+GGG | - | chr3_1:92054530-92054549 | Msa0387950:CDS | 25.0% |
| ! | AGGTTTATAAAGAGATTAAG+GGG | - | chr3_1:92054531-92054550 | Msa0387950:CDS | 25.0% |
| !!! | ATTCAATTTTTGGATAAGCT+TGG | - | chr3_1:92054727-92054746 | Msa0387950:intron | 25.0% |
| !! | ATACTTTTAACATTGAAGCT+GGG | - | chr3_1:92054917-92054936 | Msa0387950:CDS | 25.0% |
| ! | CAGAAAACAAACACATAAAT+CGG | + | chr3_1:92055184-92055203 | None:intergenic | 25.0% |
| !! | TAATGAGTACTTTGTTATAC+AGG | - | chr3_1:92055346-92055365 | Msa0387950:CDS | 25.0% |
| ! | TGCAACTCTAATTCATTATA+TGG | + | chr3_1:92055424-92055443 | None:intergenic | 25.0% |
| !!! | AGAAGATTCATTTTTAGACA+TGG | - | chr3_1:92054181-92054200 | Msa0387950:CDS | 25.0% |
| ! | TTAATCTCTTTATAAACCTC+AGG | + | chr3_1:92054530-92054549 | None:intergenic | 25.0% |
| ! | TGAGGTTTATAAAGAGATTA+AGG | - | chr3_1:92054529-92054548 | Msa0387950:CDS | 25.0% |
| ! | GAGGTTTATAAAGAGATTAA+GGG | - | chr3_1:92054530-92054549 | Msa0387950:CDS | 25.0% |
| ! | AGGTTTATAAAGAGATTAAG+GGG | - | chr3_1:92054531-92054550 | Msa0387950:CDS | 25.0% |
| !!! | ATTCAATTTTTGGATAAGCT+TGG | - | chr3_1:92054727-92054746 | Msa0387950:intron | 25.0% |
| !! | ATACTTTTAACATTGAAGCT+GGG | - | chr3_1:92054917-92054936 | Msa0387950:CDS | 25.0% |
| ! | CAGAAAACAAACACATAAAT+CGG | + | chr3_1:92055184-92055203 | None:intergenic | 25.0% |
| !! | TAATGAGTACTTTGTTATAC+AGG | - | chr3_1:92055346-92055365 | Msa0387950:CDS | 25.0% |
| ! | TGCAACTCTAATTCATTATA+TGG | + | chr3_1:92055424-92055443 | None:intergenic | 25.0% |
| ! | GTTGTTGTTGTTATTATCGT+CGG | + | chr3_1:92053787-92053806 | None:intergenic | 30.0% |
| !! | AATGTTTGAGAAGGTTGATA+TGG | - | chr3_1:92054277-92054296 | Msa0387950:CDS | 30.0% |
| AGGTTTAGATGTATCAATGT+AGG | - | chr3_1:92054374-92054393 | Msa0387950:CDS | 30.0% | |
| GGTTTAGATGTATCAATGTA+GGG | - | chr3_1:92054375-92054394 | Msa0387950:CDS | 30.0% | |
| TATGAGTGAAAAGGAGAAAA+TGG | - | chr3_1:92054436-92054455 | Msa0387950:intron | 30.0% | |
| !!! | AGGAGAAAATGGAGTTTTTT+AGG | - | chr3_1:92054447-92054466 | Msa0387950:intron | 30.0% |
| AGAAATGGTATCATGATGAA+GGG | - | chr3_1:92054615-92054634 | Msa0387950:CDS | 30.0% | |
| ! | TTGTGCTCAGTTGTTAATTT+TGG | - | chr3_1:92054643-92054662 | Msa0387950:intron | 30.0% |
| ! | TCAATGTTAAAAGTATGACC+CGG | + | chr3_1:92054913-92054932 | None:intergenic | 30.0% |
| ! | CATACTTTTAACATTGAAGC+TGG | - | chr3_1:92054916-92054935 | Msa0387950:CDS | 30.0% |
| AATGTTGGAAAACAAAGCAA+GGG | + | chr3_1:92054968-92054987 | None:intergenic | 30.0% | |
| TGAGATTAAGCTTAAAGAGT+TGG | - | chr3_1:92055035-92055054 | Msa0387950:CDS | 30.0% | |
| ! | AGCTTTTCTTCTATTGCATT+TGG | - | chr3_1:92055530-92055549 | Msa0387950:CDS | 30.0% |
| ! | GTTGTTGTTGTTATTATCGT+CGG | + | chr3_1:92053787-92053806 | None:intergenic | 30.0% |
| !! | AATGTTTGAGAAGGTTGATA+TGG | - | chr3_1:92054277-92054296 | Msa0387950:CDS | 30.0% |
| AGGTTTAGATGTATCAATGT+AGG | - | chr3_1:92054374-92054393 | Msa0387950:CDS | 30.0% | |
| GGTTTAGATGTATCAATGTA+GGG | - | chr3_1:92054375-92054394 | Msa0387950:CDS | 30.0% | |
| TATGAGTGAAAAGGAGAAAA+TGG | - | chr3_1:92054436-92054455 | Msa0387950:intron | 30.0% | |
| !!! | AGGAGAAAATGGAGTTTTTT+AGG | - | chr3_1:92054447-92054466 | Msa0387950:intron | 30.0% |
| AGAAATGGTATCATGATGAA+GGG | - | chr3_1:92054615-92054634 | Msa0387950:CDS | 30.0% | |
| ! | TTGTGCTCAGTTGTTAATTT+TGG | - | chr3_1:92054643-92054662 | Msa0387950:intron | 30.0% |
| ! | TCAATGTTAAAAGTATGACC+CGG | + | chr3_1:92054913-92054932 | None:intergenic | 30.0% |
| ! | CATACTTTTAACATTGAAGC+TGG | - | chr3_1:92054916-92054935 | Msa0387950:CDS | 30.0% |
| AATGTTGGAAAACAAAGCAA+GGG | + | chr3_1:92054968-92054987 | None:intergenic | 30.0% | |
| TGAGATTAAGCTTAAAGAGT+TGG | - | chr3_1:92055035-92055054 | Msa0387950:CDS | 30.0% | |
| ! | AGCTTTTCTTCTATTGCATT+TGG | - | chr3_1:92055530-92055549 | Msa0387950:CDS | 30.0% |
| AGAGGAAAGTTGACATTTGA+CGG | + | chr3_1:92053763-92053782 | None:intergenic | 35.0% | |
| !!! | GGTGAGGGTTTTTTTGAAAA+GGG | + | chr3_1:92053823-92053842 | None:intergenic | 35.0% |
| !!! | ATCTTGTGATTTTGGTTCGT+CGG | + | chr3_1:92054039-92054058 | None:intergenic | 35.0% |
| ACGAACCAAAATCACAAGAT+TGG | - | chr3_1:92054039-92054058 | Msa0387950:intron | 35.0% | |
| CGAACCAAAATCACAAGATT+GGG | - | chr3_1:92054040-92054059 | Msa0387950:intron | 35.0% | |
| ! | GAATCCCAATCTTGTGATTT+TGG | + | chr3_1:92054047-92054066 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGTTTGGTAGAA+CGG | + | chr3_1:92054093-92054112 | None:intergenic | 35.0% |
| GTTCTACCAAACAAACTTAG+CGG | - | chr3_1:92054092-92054111 | Msa0387950:intron | 35.0% | |
| ! | TTGAATCCGCTAAGTTTGTT+TGG | + | chr3_1:92054101-92054120 | None:intergenic | 35.0% |
| CTAGAAAGTTTAGCTACATG+TGG | - | chr3_1:92054254-92054273 | Msa0387950:CDS | 35.0% | |
| TACATGTGGAATGTTTGAGA+AGG | - | chr3_1:92054268-92054287 | Msa0387950:CDS | 35.0% | |
| !! | TTTGAGAAGGTTGATATGGA+AGG | - | chr3_1:92054281-92054300 | Msa0387950:CDS | 35.0% |
| !! | TTGAGAAGGTTGATATGGAA+GGG | - | chr3_1:92054282-92054301 | Msa0387950:CDS | 35.0% |
| ATGTATCAATGTAGGGTTGA+TGG | - | chr3_1:92054382-92054401 | Msa0387950:CDS | 35.0% | |
| ! | TGTATCAATGTAGGGTTGAT+GGG | - | chr3_1:92054383-92054402 | Msa0387950:CDS | 35.0% |
| ATATCAGGATCCATTTCAAC+CGG | + | chr3_1:92054419-92054438 | None:intergenic | 35.0% | |
| ! | TTCTCCTTTTCACTCATATC+AGG | + | chr3_1:92054434-92054453 | None:intergenic | 35.0% |
| !!! | AGTTTTTTAGGAGACAAGAG+AGG | - | chr3_1:92054459-92054478 | Msa0387950:intron | 35.0% |
| !!! | GTTTTTTAGGAGACAAGAGA+GGG | - | chr3_1:92054460-92054479 | Msa0387950:intron | 35.0% |
| TAGGTTGTTGCAGAAGATTA+GGG | - | chr3_1:92054583-92054602 | Msa0387950:CDS | 35.0% | |
| CAGAAATGGTATCATGATGA+AGG | - | chr3_1:92054614-92054633 | Msa0387950:CDS | 35.0% | |
| TTGTTTGTGAGGTTGTTGAA+GGG | - | chr3_1:92054686-92054705 | Msa0387950:intron | 35.0% | |
| !! | AAGCTTGGTAATGTTGTTGA+AGG | - | chr3_1:92054742-92054761 | Msa0387950:intron | 35.0% |
| !! | AGCTTGGTAATGTTGTTGAA+GGG | - | chr3_1:92054743-92054762 | Msa0387950:intron | 35.0% |
| TCAAAGAGAACTTCCAAAAC+AGG | - | chr3_1:92054786-92054805 | Msa0387950:CDS | 35.0% | |
| ! | ACAAACATACACACCTGTTT+TGG | + | chr3_1:92054802-92054821 | None:intergenic | 35.0% |
| AATGTGCTTGTTTGTGTGTT+TGG | - | chr3_1:92054823-92054842 | Msa0387950:CDS | 35.0% | |
| CTTGTTTGTGTGTTTGGTTA+TGG | - | chr3_1:92054829-92054848 | Msa0387950:CDS | 35.0% | |
| TGGTGAATGTTTGTTTGTGT+TGG | - | chr3_1:92054868-92054887 | Msa0387950:CDS | 35.0% | |
| TTTGACAAAACAGCTTCTTC+CGG | - | chr3_1:92054891-92054910 | Msa0387950:CDS | 35.0% | |
| CAATGTTGGAAAACAAAGCA+AGG | + | chr3_1:92054969-92054988 | None:intergenic | 35.0% | |
| TAAAGAGTTGGAGCAGAAAT+CGG | - | chr3_1:92055047-92055066 | Msa0387950:CDS | 35.0% | |
| ! | TTTCTGTTTGATGTTTCTGC+AGG | - | chr3_1:92055198-92055217 | Msa0387950:CDS | 35.0% |
| ! | GTACTTTGTTATACAGGTCA+TGG | - | chr3_1:92055352-92055371 | Msa0387950:CDS | 35.0% |
| ! | TATCAGTTCTAACTTGAGCA+CGG | - | chr3_1:92055496-92055515 | Msa0387950:CDS | 35.0% |
| TAGAAGAGAATGCATAGTGA+AGG | + | chr3_1:92055601-92055620 | None:intergenic | 35.0% | |
| !! | CTCTTCTACTAGTCTACTTT+TGG | - | chr3_1:92055613-92055632 | Msa0387950:CDS | 35.0% |
| AGAGGAAAGTTGACATTTGA+CGG | + | chr3_1:92053763-92053782 | None:intergenic | 35.0% | |
| !!! | GGTGAGGGTTTTTTTGAAAA+GGG | + | chr3_1:92053823-92053842 | None:intergenic | 35.0% |
| !!! | ATCTTGTGATTTTGGTTCGT+CGG | + | chr3_1:92054039-92054058 | None:intergenic | 35.0% |
| ACGAACCAAAATCACAAGAT+TGG | - | chr3_1:92054039-92054058 | Msa0387950:intron | 35.0% | |
| CGAACCAAAATCACAAGATT+GGG | - | chr3_1:92054040-92054059 | Msa0387950:intron | 35.0% | |
| ! | GAATCCCAATCTTGTGATTT+TGG | + | chr3_1:92054047-92054066 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGTTTGGTAGAA+CGG | + | chr3_1:92054093-92054112 | None:intergenic | 35.0% |
| GTTCTACCAAACAAACTTAG+CGG | - | chr3_1:92054092-92054111 | Msa0387950:intron | 35.0% | |
| ! | TTGAATCCGCTAAGTTTGTT+TGG | + | chr3_1:92054101-92054120 | None:intergenic | 35.0% |
| CTAGAAAGTTTAGCTACATG+TGG | - | chr3_1:92054254-92054273 | Msa0387950:CDS | 35.0% | |
| TACATGTGGAATGTTTGAGA+AGG | - | chr3_1:92054268-92054287 | Msa0387950:CDS | 35.0% | |
| !! | TTTGAGAAGGTTGATATGGA+AGG | - | chr3_1:92054281-92054300 | Msa0387950:CDS | 35.0% |
| !! | TTGAGAAGGTTGATATGGAA+GGG | - | chr3_1:92054282-92054301 | Msa0387950:CDS | 35.0% |
| ATGTATCAATGTAGGGTTGA+TGG | - | chr3_1:92054382-92054401 | Msa0387950:CDS | 35.0% | |
| ! | TGTATCAATGTAGGGTTGAT+GGG | - | chr3_1:92054383-92054402 | Msa0387950:CDS | 35.0% |
| ATATCAGGATCCATTTCAAC+CGG | + | chr3_1:92054419-92054438 | None:intergenic | 35.0% | |
| ! | TTCTCCTTTTCACTCATATC+AGG | + | chr3_1:92054434-92054453 | None:intergenic | 35.0% |
| !!! | AGTTTTTTAGGAGACAAGAG+AGG | - | chr3_1:92054459-92054478 | Msa0387950:intron | 35.0% |
| !!! | GTTTTTTAGGAGACAAGAGA+GGG | - | chr3_1:92054460-92054479 | Msa0387950:intron | 35.0% |
| TAGGTTGTTGCAGAAGATTA+GGG | - | chr3_1:92054583-92054602 | Msa0387950:CDS | 35.0% | |
| CAGAAATGGTATCATGATGA+AGG | - | chr3_1:92054614-92054633 | Msa0387950:CDS | 35.0% | |
| TTGTTTGTGAGGTTGTTGAA+GGG | - | chr3_1:92054686-92054705 | Msa0387950:intron | 35.0% | |
| !! | AAGCTTGGTAATGTTGTTGA+AGG | - | chr3_1:92054742-92054761 | Msa0387950:intron | 35.0% |
| !! | AGCTTGGTAATGTTGTTGAA+GGG | - | chr3_1:92054743-92054762 | Msa0387950:intron | 35.0% |
| TCAAAGAGAACTTCCAAAAC+AGG | - | chr3_1:92054786-92054805 | Msa0387950:CDS | 35.0% | |
| ! | ACAAACATACACACCTGTTT+TGG | + | chr3_1:92054802-92054821 | None:intergenic | 35.0% |
| AATGTGCTTGTTTGTGTGTT+TGG | - | chr3_1:92054823-92054842 | Msa0387950:CDS | 35.0% | |
| CTTGTTTGTGTGTTTGGTTA+TGG | - | chr3_1:92054829-92054848 | Msa0387950:CDS | 35.0% | |
| TGGTGAATGTTTGTTTGTGT+TGG | - | chr3_1:92054868-92054887 | Msa0387950:CDS | 35.0% | |
| TTTGACAAAACAGCTTCTTC+CGG | - | chr3_1:92054891-92054910 | Msa0387950:CDS | 35.0% | |
| CAATGTTGGAAAACAAAGCA+AGG | + | chr3_1:92054969-92054988 | None:intergenic | 35.0% | |
| TAAAGAGTTGGAGCAGAAAT+CGG | - | chr3_1:92055047-92055066 | Msa0387950:CDS | 35.0% | |
| ! | TTTCTGTTTGATGTTTCTGC+AGG | - | chr3_1:92055198-92055217 | Msa0387950:CDS | 35.0% |
| ! | GTACTTTGTTATACAGGTCA+TGG | - | chr3_1:92055352-92055371 | Msa0387950:CDS | 35.0% |
| ! | TATCAGTTCTAACTTGAGCA+CGG | - | chr3_1:92055496-92055515 | Msa0387950:CDS | 35.0% |
| TAGAAGAGAATGCATAGTGA+AGG | + | chr3_1:92055601-92055620 | None:intergenic | 35.0% | |
| !! | CTCTTCTACTAGTCTACTTT+TGG | - | chr3_1:92055613-92055632 | Msa0387950:CDS | 35.0% |
| TGAAATGGTGGTTAAGCGAT+TGG | + | chr3_1:92053688-92053707 | None:intergenic | 40.0% | |
| ! | GTTGTTATTATCGTCGGAAG+AGG | + | chr3_1:92053781-92053800 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTGAAAAGGGAGG+AGG | + | chr3_1:92053817-92053836 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTTTTGAAAAGGG+AGG | + | chr3_1:92053820-92053839 | None:intergenic | 40.0% |
| !!! | CGGTGAGGGTTTTTTTGAAA+AGG | + | chr3_1:92053824-92053843 | None:intergenic | 40.0% |
| ACCTCCGGAGAAATTGAAAT+CGG | + | chr3_1:92053901-92053920 | None:intergenic | 40.0% | |
| !! | GGTGGTTGGTTTAACAACAA+CGG | - | chr3_1:92053960-92053979 | Msa0387950:intron | 40.0% |
| CGAAACACCAAGACGAAAAT+CGG | - | chr3_1:92054155-92054174 | Msa0387950:intron | 40.0% | |
| ! | TTCTGTTCCGATTTTCGTCT+TGG | + | chr3_1:92054165-92054184 | None:intergenic | 40.0% |
| !!! | GTATACACCACCTGGTTTTA+GGG | + | chr3_1:92054210-92054229 | None:intergenic | 40.0% |
| !! | TGTATACACCACCTGGTTTT+AGG | + | chr3_1:92054211-92054230 | None:intergenic | 40.0% |
| GGATCCTGATATGAGTGAAA+AGG | - | chr3_1:92054427-92054446 | Msa0387950:intron | 40.0% | |
| AGAGGAGGATTGATACTTCT+AGG | - | chr3_1:92054489-92054508 | Msa0387950:intron | 40.0% | |
| !! | TACTTCTAGGCCTTGTCTTT+TGG | - | chr3_1:92054502-92054521 | Msa0387950:CDS | 40.0% |
| CTAGGTTGTTGCAGAAGATT+AGG | - | chr3_1:92054582-92054601 | Msa0387950:CDS | 40.0% | |
| TGTTGCAGAAGATTAGGGAT+AGG | - | chr3_1:92054588-92054607 | Msa0387950:CDS | 40.0% | |
| GTTGCAGAAGATTAGGGATA+GGG | - | chr3_1:92054589-92054608 | Msa0387950:CDS | 40.0% | |
| TTAGGGATAGGGTTCAGAAA+TGG | - | chr3_1:92054600-92054619 | Msa0387950:CDS | 40.0% | |
| GTTGTTTGTGAGGTTGTTGA+AGG | - | chr3_1:92054685-92054704 | Msa0387950:intron | 40.0% | |
| TGTTTGTGAGGTTGTTGAAG+GGG | - | chr3_1:92054687-92054706 | Msa0387950:intron | 40.0% | |
| GGAAGTTCTCTTTGAACAAC+AGG | + | chr3_1:92054781-92054800 | None:intergenic | 40.0% | |
| TTGACAAAACAGCTTCTTCC+GGG | - | chr3_1:92054892-92054911 | Msa0387950:CDS | 40.0% | |
| CATGGATCATGTGTATATGC+AGG | - | chr3_1:92055370-92055389 | Msa0387950:CDS | 40.0% | |
| GATCATGTGTATATGCAGGA+AGG | - | chr3_1:92055374-92055393 | Msa0387950:CDS | 40.0% | |
| ! | ATCAGTTCTAACTTGAGCAC+GGG | - | chr3_1:92055497-92055516 | Msa0387950:CDS | 40.0% |
| TTTGGACCTGTAAGTCCTAT+TGG | - | chr3_1:92055548-92055567 | Msa0387950:CDS | 40.0% | |
| AACTTCAATCCAGCACCAAT+AGG | + | chr3_1:92055566-92055585 | None:intergenic | 40.0% | |
| TGAAATGGTGGTTAAGCGAT+TGG | + | chr3_1:92053688-92053707 | None:intergenic | 40.0% | |
| ! | GTTGTTATTATCGTCGGAAG+AGG | + | chr3_1:92053781-92053800 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTGAAAAGGGAGG+AGG | + | chr3_1:92053817-92053836 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTTTTGAAAAGGG+AGG | + | chr3_1:92053820-92053839 | None:intergenic | 40.0% |
| !!! | CGGTGAGGGTTTTTTTGAAA+AGG | + | chr3_1:92053824-92053843 | None:intergenic | 40.0% |
| ACCTCCGGAGAAATTGAAAT+CGG | + | chr3_1:92053901-92053920 | None:intergenic | 40.0% | |
| !! | GGTGGTTGGTTTAACAACAA+CGG | - | chr3_1:92053960-92053979 | Msa0387950:intron | 40.0% |
| CGAAACACCAAGACGAAAAT+CGG | - | chr3_1:92054155-92054174 | Msa0387950:intron | 40.0% | |
| ! | TTCTGTTCCGATTTTCGTCT+TGG | + | chr3_1:92054165-92054184 | None:intergenic | 40.0% |
| !!! | GTATACACCACCTGGTTTTA+GGG | + | chr3_1:92054210-92054229 | None:intergenic | 40.0% |
| !! | TGTATACACCACCTGGTTTT+AGG | + | chr3_1:92054211-92054230 | None:intergenic | 40.0% |
| GGATCCTGATATGAGTGAAA+AGG | - | chr3_1:92054427-92054446 | Msa0387950:intron | 40.0% | |
| AGAGGAGGATTGATACTTCT+AGG | - | chr3_1:92054489-92054508 | Msa0387950:intron | 40.0% | |
| !! | TACTTCTAGGCCTTGTCTTT+TGG | - | chr3_1:92054502-92054521 | Msa0387950:CDS | 40.0% |
| CTAGGTTGTTGCAGAAGATT+AGG | - | chr3_1:92054582-92054601 | Msa0387950:CDS | 40.0% | |
| TGTTGCAGAAGATTAGGGAT+AGG | - | chr3_1:92054588-92054607 | Msa0387950:CDS | 40.0% | |
| GTTGCAGAAGATTAGGGATA+GGG | - | chr3_1:92054589-92054608 | Msa0387950:CDS | 40.0% | |
| TTAGGGATAGGGTTCAGAAA+TGG | - | chr3_1:92054600-92054619 | Msa0387950:CDS | 40.0% | |
| GTTGTTTGTGAGGTTGTTGA+AGG | - | chr3_1:92054685-92054704 | Msa0387950:intron | 40.0% | |
| TGTTTGTGAGGTTGTTGAAG+GGG | - | chr3_1:92054687-92054706 | Msa0387950:intron | 40.0% | |
| GGAAGTTCTCTTTGAACAAC+AGG | + | chr3_1:92054781-92054800 | None:intergenic | 40.0% | |
| TTGACAAAACAGCTTCTTCC+GGG | - | chr3_1:92054892-92054911 | Msa0387950:CDS | 40.0% | |
| CATGGATCATGTGTATATGC+AGG | - | chr3_1:92055370-92055389 | Msa0387950:CDS | 40.0% | |
| GATCATGTGTATATGCAGGA+AGG | - | chr3_1:92055374-92055393 | Msa0387950:CDS | 40.0% | |
| ! | ATCAGTTCTAACTTGAGCAC+GGG | - | chr3_1:92055497-92055516 | Msa0387950:CDS | 40.0% |
| TTTGGACCTGTAAGTCCTAT+TGG | - | chr3_1:92055548-92055567 | Msa0387950:CDS | 40.0% | |
| AACTTCAATCCAGCACCAAT+AGG | + | chr3_1:92055566-92055585 | None:intergenic | 40.0% | |
| AATGGTGGTTAAGCGATTGG+AGG | + | chr3_1:92053685-92053704 | None:intergenic | 45.0% | |
| AGTTGACATTTGACGGAGGA+AGG | + | chr3_1:92053756-92053775 | None:intergenic | 45.0% | |
| GGAAAGTTGACATTTGACGG+AGG | + | chr3_1:92053760-92053779 | None:intergenic | 45.0% | |
| GGAGAAATTGAAATCGGGGA+GGG | + | chr3_1:92053895-92053914 | None:intergenic | 45.0% | |
| CTCCCCGATTTCAATTTCTC+CGG | - | chr3_1:92053894-92053913 | Msa0387950:CDS | 45.0% | |
| CTCCGGAGAAATTGAAATCG+GGG | + | chr3_1:92053899-92053918 | None:intergenic | 45.0% | |
| CCTCCGGAGAAATTGAAATC+GGG | + | chr3_1:92053900-92053919 | None:intergenic | 45.0% | |
| GATTTCAATTTCTCCGGAGG+TGG | - | chr3_1:92053900-92053919 | Msa0387950:CDS | 45.0% | |
| !! | GGTTGGTTTAACAACAACGG+CGG | - | chr3_1:92053963-92053982 | Msa0387950:intron | 45.0% |
| TTTAACAACAACGGCGGTGA+AGG | - | chr3_1:92053969-92053988 | Msa0387950:intron | 45.0% | |
| GGTAGAACGGTTATGTTAGC+TGG | + | chr3_1:92054080-92054099 | None:intergenic | 45.0% | |
| GACATGGTATCCCTAAAACC+AGG | - | chr3_1:92054197-92054216 | Msa0387950:CDS | 45.0% | |
| ATGGTATCCCTAAAACCAGG+TGG | - | chr3_1:92054200-92054219 | Msa0387950:CDS | 45.0% | |
| GAAGGGAAAACCAATGCTGA+TGG | - | chr3_1:92054299-92054318 | Msa0387950:CDS | 45.0% | |
| CGCTAATGTTCCATCAGCAT+TGG | + | chr3_1:92054312-92054331 | None:intergenic | 45.0% | |
| GTATGTGGGAGAAAGCTGAT+AGG | - | chr3_1:92054354-92054373 | Msa0387950:CDS | 45.0% | |
| TCAGTCGAAACCGGTTGAAA+TGG | - | chr3_1:92054406-92054425 | Msa0387950:intron | 45.0% | |
| ! | GACAAGAGAGGGAGTATAAG+AGG | - | chr3_1:92054471-92054490 | Msa0387950:intron | 45.0% |
| ! | AAGAGAGGGAGTATAAGAGG+AGG | - | chr3_1:92054474-92054493 | Msa0387950:intron | 45.0% |
| AAGGGGATGTTGAGTAAGCA+AGG | - | chr3_1:92054548-92054567 | Msa0387950:CDS | 45.0% | |
| AGGGGATGTTGAGTAAGCAA+GGG | - | chr3_1:92054549-92054568 | Msa0387950:CDS | 45.0% | |
| GATGTTGAGTAAGCAAGGGA+GGG | - | chr3_1:92054553-92054572 | Msa0387950:CDS | 45.0% | |
| AAGCTGGGAAACAAGCTTTG+AGG | - | chr3_1:92054932-92054951 | Msa0387950:CDS | 45.0% | |
| CCAACATTGAAGTGAATCCG+CGG | - | chr3_1:92054980-92054999 | Msa0387950:CDS | 45.0% | |
| CTTCCCTCATTCTTCTCATC+AGG | + | chr3_1:92055006-92055025 | None:intergenic | 45.0% | |
| !! | ACTGAGTGGAGTATTGTTCC+TGG | - | chr3_1:92055081-92055100 | Msa0387950:CDS | 45.0% |
| !! | CTGAGTGGAGTATTGTTCCT+GGG | - | chr3_1:92055082-92055101 | Msa0387950:CDS | 45.0% |
| GCGTCCAACTTTGGTATTTG+CGG | - | chr3_1:92055113-92055132 | Msa0387950:CDS | 45.0% | |
| TTCGCCGCAAATACCAAAGT+TGG | + | chr3_1:92055120-92055139 | None:intergenic | 45.0% | |
| AATGGTGGTTAAGCGATTGG+AGG | + | chr3_1:92053685-92053704 | None:intergenic | 45.0% | |
| AGTTGACATTTGACGGAGGA+AGG | + | chr3_1:92053756-92053775 | None:intergenic | 45.0% | |
| GGAAAGTTGACATTTGACGG+AGG | + | chr3_1:92053760-92053779 | None:intergenic | 45.0% | |
| GGAGAAATTGAAATCGGGGA+GGG | + | chr3_1:92053895-92053914 | None:intergenic | 45.0% | |
| CTCCCCGATTTCAATTTCTC+CGG | - | chr3_1:92053894-92053913 | Msa0387950:CDS | 45.0% | |
| CTCCGGAGAAATTGAAATCG+GGG | + | chr3_1:92053899-92053918 | None:intergenic | 45.0% | |
| CCTCCGGAGAAATTGAAATC+GGG | + | chr3_1:92053900-92053919 | None:intergenic | 45.0% | |
| GATTTCAATTTCTCCGGAGG+TGG | - | chr3_1:92053900-92053919 | Msa0387950:CDS | 45.0% | |
| !! | GGTTGGTTTAACAACAACGG+CGG | - | chr3_1:92053963-92053982 | Msa0387950:intron | 45.0% |
| TTTAACAACAACGGCGGTGA+AGG | - | chr3_1:92053969-92053988 | Msa0387950:intron | 45.0% | |
| GGTAGAACGGTTATGTTAGC+TGG | + | chr3_1:92054080-92054099 | None:intergenic | 45.0% | |
| GACATGGTATCCCTAAAACC+AGG | - | chr3_1:92054197-92054216 | Msa0387950:CDS | 45.0% | |
| ATGGTATCCCTAAAACCAGG+TGG | - | chr3_1:92054200-92054219 | Msa0387950:CDS | 45.0% | |
| GAAGGGAAAACCAATGCTGA+TGG | - | chr3_1:92054299-92054318 | Msa0387950:CDS | 45.0% | |
| CGCTAATGTTCCATCAGCAT+TGG | + | chr3_1:92054312-92054331 | None:intergenic | 45.0% | |
| GTATGTGGGAGAAAGCTGAT+AGG | - | chr3_1:92054354-92054373 | Msa0387950:CDS | 45.0% | |
| TCAGTCGAAACCGGTTGAAA+TGG | - | chr3_1:92054406-92054425 | Msa0387950:intron | 45.0% | |
| ! | GACAAGAGAGGGAGTATAAG+AGG | - | chr3_1:92054471-92054490 | Msa0387950:intron | 45.0% |
| ! | AAGAGAGGGAGTATAAGAGG+AGG | - | chr3_1:92054474-92054493 | Msa0387950:intron | 45.0% |
| AAGGGGATGTTGAGTAAGCA+AGG | - | chr3_1:92054548-92054567 | Msa0387950:CDS | 45.0% | |
| AGGGGATGTTGAGTAAGCAA+GGG | - | chr3_1:92054549-92054568 | Msa0387950:CDS | 45.0% | |
| GATGTTGAGTAAGCAAGGGA+GGG | - | chr3_1:92054553-92054572 | Msa0387950:CDS | 45.0% | |
| AAGCTGGGAAACAAGCTTTG+AGG | - | chr3_1:92054932-92054951 | Msa0387950:CDS | 45.0% | |
| CCAACATTGAAGTGAATCCG+CGG | - | chr3_1:92054980-92054999 | Msa0387950:CDS | 45.0% | |
| CTTCCCTCATTCTTCTCATC+AGG | + | chr3_1:92055006-92055025 | None:intergenic | 45.0% | |
| !! | ACTGAGTGGAGTATTGTTCC+TGG | - | chr3_1:92055081-92055100 | Msa0387950:CDS | 45.0% |
| !! | CTGAGTGGAGTATTGTTCCT+GGG | - | chr3_1:92055082-92055101 | Msa0387950:CDS | 45.0% |
| GCGTCCAACTTTGGTATTTG+CGG | - | chr3_1:92055113-92055132 | Msa0387950:CDS | 45.0% | |
| TTCGCCGCAAATACCAAAGT+TGG | + | chr3_1:92055120-92055139 | None:intergenic | 45.0% | |
| TAAGCGATTGGAGGCGAAGA+AGG | + | chr3_1:92053676-92053695 | None:intergenic | 50.0% | |
| GAGAGATGTGGTGGCTGTTA+CGG | + | chr3_1:92053731-92053750 | None:intergenic | 50.0% | |
| ATTGAAATCGGGGAGGGAGT+CGG | + | chr3_1:92053889-92053908 | None:intergenic | 50.0% | |
| CGGAGAAATTGAAATCGGGG+AGG | + | chr3_1:92053896-92053915 | None:intergenic | 50.0% | |
| CCCGATTTCAATTTCTCCGG+AGG | - | chr3_1:92053897-92053916 | Msa0387950:CDS | 50.0% | |
| TTCAATTTCTCCGGAGGTGG+CGG | - | chr3_1:92053903-92053922 | Msa0387950:CDS | 50.0% | |
| !! | TCGTCTTGGTGTTTCGATCG+AGG | + | chr3_1:92054151-92054170 | None:intergenic | 50.0% |
| !! | AGCGTTGACGATTTCGTTCG+CGG | - | chr3_1:92054328-92054347 | Msa0387950:CDS | 50.0% |
| ! | TTTCGTTCGCGGAGAGTATG+TGG | - | chr3_1:92054339-92054358 | Msa0387950:CDS | 50.0% |
| ! | TTCGTTCGCGGAGAGTATGT+GGG | - | chr3_1:92054340-92054359 | Msa0387950:CDS | 50.0% |
| ! | GTTGATGGGTCAGTCGAAAC+CGG | - | chr3_1:92054397-92054416 | Msa0387950:intron | 50.0% |
| ACCTCAGGAGCCAAAAGACA+AGG | + | chr3_1:92054515-92054534 | None:intergenic | 50.0% | |
| GGATGTTGAGTAAGCAAGGG+AGG | - | chr3_1:92054552-92054571 | Msa0387950:CDS | 50.0% | |
| CCGCGGATTCACTTCAATGT+TGG | + | chr3_1:92054983-92055002 | None:intergenic | 50.0% | |
| TCATTCTTCTCATCAGGCCG+CGG | + | chr3_1:92055000-92055019 | None:intergenic | 50.0% | |
| CGGCCTGATGAGAAGAATGA+GGG | - | chr3_1:92055000-92055019 | Msa0387950:CDS | 50.0% | |
| ! | CGGCTGAAGTTAGTACTGAG+TGG | - | chr3_1:92055067-92055086 | Msa0387950:CDS | 50.0% |
| ! | AGTTCTAACTTGAGCACGGG+TGG | - | chr3_1:92055500-92055519 | Msa0387950:CDS | 50.0% |
| CCAGCACCAATAGGACTTAC+AGG | + | chr3_1:92055557-92055576 | None:intergenic | 50.0% | |
| CCTGTAAGTCCTATTGGTGC+TGG | - | chr3_1:92055554-92055573 | Msa0387950:CDS | 50.0% | |
| TAAGCGATTGGAGGCGAAGA+AGG | + | chr3_1:92053676-92053695 | None:intergenic | 50.0% | |
| GAGAGATGTGGTGGCTGTTA+CGG | + | chr3_1:92053731-92053750 | None:intergenic | 50.0% | |
| ATTGAAATCGGGGAGGGAGT+CGG | + | chr3_1:92053889-92053908 | None:intergenic | 50.0% | |
| CGGAGAAATTGAAATCGGGG+AGG | + | chr3_1:92053896-92053915 | None:intergenic | 50.0% | |
| CCCGATTTCAATTTCTCCGG+AGG | - | chr3_1:92053897-92053916 | Msa0387950:CDS | 50.0% | |
| TTCAATTTCTCCGGAGGTGG+CGG | - | chr3_1:92053903-92053922 | Msa0387950:CDS | 50.0% | |
| !! | TCGTCTTGGTGTTTCGATCG+AGG | + | chr3_1:92054151-92054170 | None:intergenic | 50.0% |
| !! | AGCGTTGACGATTTCGTTCG+CGG | - | chr3_1:92054328-92054347 | Msa0387950:CDS | 50.0% |
| ! | TTTCGTTCGCGGAGAGTATG+TGG | - | chr3_1:92054339-92054358 | Msa0387950:CDS | 50.0% |
| ! | TTCGTTCGCGGAGAGTATGT+GGG | - | chr3_1:92054340-92054359 | Msa0387950:CDS | 50.0% |
| ! | GTTGATGGGTCAGTCGAAAC+CGG | - | chr3_1:92054397-92054416 | Msa0387950:intron | 50.0% |
| ACCTCAGGAGCCAAAAGACA+AGG | + | chr3_1:92054515-92054534 | None:intergenic | 50.0% | |
| GGATGTTGAGTAAGCAAGGG+AGG | - | chr3_1:92054552-92054571 | Msa0387950:CDS | 50.0% | |
| CCGCGGATTCACTTCAATGT+TGG | + | chr3_1:92054983-92055002 | None:intergenic | 50.0% | |
| TCATTCTTCTCATCAGGCCG+CGG | + | chr3_1:92055000-92055019 | None:intergenic | 50.0% | |
| CGGCCTGATGAGAAGAATGA+GGG | - | chr3_1:92055000-92055019 | Msa0387950:CDS | 50.0% | |
| ! | CGGCTGAAGTTAGTACTGAG+TGG | - | chr3_1:92055067-92055086 | Msa0387950:CDS | 50.0% |
| ! | AGTTCTAACTTGAGCACGGG+TGG | - | chr3_1:92055500-92055519 | Msa0387950:CDS | 50.0% |
| CCAGCACCAATAGGACTTAC+AGG | + | chr3_1:92055557-92055576 | None:intergenic | 50.0% | |
| CCTGTAAGTCCTATTGGTGC+TGG | - | chr3_1:92055554-92055573 | Msa0387950:CDS | 50.0% | |
| AGGAGGAGGGGTTGAAATGG+TGG | + | chr3_1:92053700-92053719 | None:intergenic | 55.0% | |
| AGGAGGAGGAGGGGTTGAAA+TGG | + | chr3_1:92053703-92053722 | None:intergenic | 55.0% | |
| AGATGTGGTGGCTGTTACGG+CGG | + | chr3_1:92053728-92053747 | None:intergenic | 55.0% | |
| AGGAAGGACGAGAGATGTGG+TGG | + | chr3_1:92053740-92053759 | None:intergenic | 55.0% | |
| AACAACAACGGCGGTGAAGG+AGG | - | chr3_1:92053972-92053991 | Msa0387950:intron | 55.0% | |
| GCGGTGAAGGAGGTGATTTC+TGG | - | chr3_1:92053982-92054001 | Msa0387950:intron | 55.0% | |
| !!! | TTTTGGTTCGTCGGCGAACG+CGG | + | chr3_1:92054030-92054049 | None:intergenic | 55.0% |
| !!! | GCCTTGTCTTTTGGCTCCTG+AGG | - | chr3_1:92054511-92054530 | Msa0387950:CDS | 55.0% |
| ! | AGCAAGGGAGGGTTAGTGCT+AGG | - | chr3_1:92054564-92054583 | Msa0387950:CDS | 55.0% |
| TGGCAATCTGAATACGCGCG+AGG | - | chr3_1:92054663-92054682 | Msa0387950:intron | 55.0% | |
| TACGCGCGAGGTTGTTTGTG+AGG | - | chr3_1:92054675-92054694 | Msa0387950:intron | 55.0% | |
| GCGGCCTGATGAGAAGAATG+AGG | - | chr3_1:92054999-92055018 | Msa0387950:CDS | 55.0% | |
| !! | TGGAGTATTGTTCCTGGGCG+AGG | - | chr3_1:92055087-92055106 | Msa0387950:CDS | 55.0% |
| AGTATTGTTCCTGGGCGAGG+AGG | - | chr3_1:92055090-92055109 | Msa0387950:CDS | 55.0% | |
| GTATTGTTCCTGGGCGAGGA+GGG | - | chr3_1:92055091-92055110 | Msa0387950:CDS | 55.0% | |
| AACTTGAGCACGGGTGGTGA+TGG | - | chr3_1:92055506-92055525 | Msa0387950:CDS | 55.0% | |
| ACTTGAGCACGGGTGGTGAT+GGG | - | chr3_1:92055507-92055526 | Msa0387950:CDS | 55.0% | |
| AGGAGGAGGGGTTGAAATGG+TGG | + | chr3_1:92053700-92053719 | None:intergenic | 55.0% | |
| AGGAGGAGGAGGGGTTGAAA+TGG | + | chr3_1:92053703-92053722 | None:intergenic | 55.0% | |
| AGATGTGGTGGCTGTTACGG+CGG | + | chr3_1:92053728-92053747 | None:intergenic | 55.0% | |
| AGGAAGGACGAGAGATGTGG+TGG | + | chr3_1:92053740-92053759 | None:intergenic | 55.0% | |
| AACAACAACGGCGGTGAAGG+AGG | - | chr3_1:92053972-92053991 | Msa0387950:intron | 55.0% | |
| GCGGTGAAGGAGGTGATTTC+TGG | - | chr3_1:92053982-92054001 | Msa0387950:intron | 55.0% | |
| !!! | TTTTGGTTCGTCGGCGAACG+CGG | + | chr3_1:92054030-92054049 | None:intergenic | 55.0% |
| !!! | GCCTTGTCTTTTGGCTCCTG+AGG | - | chr3_1:92054511-92054530 | Msa0387950:CDS | 55.0% |
| ! | AGCAAGGGAGGGTTAGTGCT+AGG | - | chr3_1:92054564-92054583 | Msa0387950:CDS | 55.0% |
| TGGCAATCTGAATACGCGCG+AGG | - | chr3_1:92054663-92054682 | Msa0387950:intron | 55.0% | |
| TACGCGCGAGGTTGTTTGTG+AGG | - | chr3_1:92054675-92054694 | Msa0387950:intron | 55.0% | |
| GCGGCCTGATGAGAAGAATG+AGG | - | chr3_1:92054999-92055018 | Msa0387950:CDS | 55.0% | |
| !! | TGGAGTATTGTTCCTGGGCG+AGG | - | chr3_1:92055087-92055106 | Msa0387950:CDS | 55.0% |
| AGTATTGTTCCTGGGCGAGG+AGG | - | chr3_1:92055090-92055109 | Msa0387950:CDS | 55.0% | |
| GTATTGTTCCTGGGCGAGGA+GGG | - | chr3_1:92055091-92055110 | Msa0387950:CDS | 55.0% | |
| AACTTGAGCACGGGTGGTGA+TGG | - | chr3_1:92055506-92055525 | Msa0387950:CDS | 55.0% | |
| ACTTGAGCACGGGTGGTGAT+GGG | - | chr3_1:92055507-92055526 | Msa0387950:CDS | 55.0% | |
| CGGAGGAAGGACGAGAGATG+TGG | + | chr3_1:92053743-92053762 | None:intergenic | 60.0% | |
| GGTGAGGAAGAGAGCAGAGG+CGG | + | chr3_1:92053868-92053887 | None:intergenic | 60.0% | |
| GTCGGTGAGGAAGAGAGCAG+AGG | + | chr3_1:92053871-92053890 | None:intergenic | 60.0% | |
| ! | AATTTCTCCGGAGGTGGCGG+CGG | - | chr3_1:92053906-92053925 | Msa0387950:CDS | 60.0% |
| GGAGGTGGAGGATCTTCCTC+CGG | - | chr3_1:92053927-92053946 | Msa0387950:intron | 60.0% | |
| GCGCGTGTGTATACACCACC+TGG | + | chr3_1:92054218-92054237 | None:intergenic | 60.0% | |
| CACACGCGCTCAGCTTCAGA+AGG | - | chr3_1:92054229-92054248 | Msa0387950:CDS | 60.0% | |
| AGGCTTCGCTTCAGCCAGGA+GGG | - | chr3_1:92055218-92055237 | Msa0387950:CDS | 60.0% | |
| CGGAGGAAGGACGAGAGATG+TGG | + | chr3_1:92053743-92053762 | None:intergenic | 60.0% | |
| GGTGAGGAAGAGAGCAGAGG+CGG | + | chr3_1:92053868-92053887 | None:intergenic | 60.0% | |
| GTCGGTGAGGAAGAGAGCAG+AGG | + | chr3_1:92053871-92053890 | None:intergenic | 60.0% | |
| ! | AATTTCTCCGGAGGTGGCGG+CGG | - | chr3_1:92053906-92053925 | Msa0387950:CDS | 60.0% |
| GGAGGTGGAGGATCTTCCTC+CGG | - | chr3_1:92053927-92053946 | Msa0387950:intron | 60.0% | |
| GCGCGTGTGTATACACCACC+TGG | + | chr3_1:92054218-92054237 | None:intergenic | 60.0% | |
| CACACGCGCTCAGCTTCAGA+AGG | - | chr3_1:92054229-92054248 | Msa0387950:CDS | 60.0% | |
| AGGCTTCGCTTCAGCCAGGA+GGG | - | chr3_1:92055218-92055237 | Msa0387950:CDS | 60.0% | |
| TACGGCGGTGAGGAGGAGGA+GGG | + | chr3_1:92053713-92053732 | None:intergenic | 65.0% | |
| TTACGGCGGTGAGGAGGAGG+AGG | + | chr3_1:92053714-92053733 | None:intergenic | 65.0% | |
| CTGTTACGGCGGTGAGGAGG+AGG | + | chr3_1:92053717-92053736 | None:intergenic | 65.0% | |
| TGGCTGTTACGGCGGTGAGG+AGG | + | chr3_1:92053720-92053739 | None:intergenic | 65.0% | |
| TGGTGGCTGTTACGGCGGTG+AGG | + | chr3_1:92053723-92053742 | None:intergenic | 65.0% | |
| ! | GATAGCGACGGTGGCGGTGA+GGG | + | chr3_1:92053838-92053857 | None:intergenic | 65.0% |
| ! | AGATAGCGACGGTGGCGGTG+AGG | + | chr3_1:92053839-92053858 | None:intergenic | 65.0% |
| GGAGGAGATAGCGACGGTGG+CGG | + | chr3_1:92053844-92053863 | None:intergenic | 65.0% | |
| GAGGAAGAGAGCAGAGGCGG+CGG | + | chr3_1:92053865-92053884 | None:intergenic | 65.0% | |
| AATCGGGGAGGGAGTCGGTG+AGG | + | chr3_1:92053884-92053903 | None:intergenic | 65.0% | |
| GGTGGAGGATCTTCCTCCGG+TGG | - | chr3_1:92053930-92053949 | Msa0387950:intron | 65.0% | |
| GGAGGATCTTCCTCCGGTGG+TGG | - | chr3_1:92053933-92053952 | Msa0387950:intron | 65.0% | |
| ! | GGATCTTCCTCCGGTGGTGG+AGG | - | chr3_1:92053936-92053955 | Msa0387950:intron | 65.0% |
| !! | TCTTCCTCCGGTGGTGGAGG+TGG | - | chr3_1:92053939-92053958 | Msa0387950:intron | 65.0% |
| CCAACCACCACCTCCACCAC+CGG | + | chr3_1:92053949-92053968 | None:intergenic | 65.0% | |
| !! | GCGAGGAGGGCGTCCAACTT+TGG | - | chr3_1:92055104-92055123 | Msa0387950:CDS | 65.0% |
| CTGCAGGCTTCGCTTCAGCC+AGG | - | chr3_1:92055214-92055233 | Msa0387950:CDS | 65.0% | |
| CAGGCTTCGCTTCAGCCAGG+AGG | - | chr3_1:92055217-92055236 | Msa0387950:CDS | 65.0% | |
| TACGGCGGTGAGGAGGAGGA+GGG | + | chr3_1:92053713-92053732 | None:intergenic | 65.0% | |
| TTACGGCGGTGAGGAGGAGG+AGG | + | chr3_1:92053714-92053733 | None:intergenic | 65.0% | |
| CTGTTACGGCGGTGAGGAGG+AGG | + | chr3_1:92053717-92053736 | None:intergenic | 65.0% | |
| TGGCTGTTACGGCGGTGAGG+AGG | + | chr3_1:92053720-92053739 | None:intergenic | 65.0% | |
| TGGTGGCTGTTACGGCGGTG+AGG | + | chr3_1:92053723-92053742 | None:intergenic | 65.0% | |
| ! | GATAGCGACGGTGGCGGTGA+GGG | + | chr3_1:92053838-92053857 | None:intergenic | 65.0% |
| ! | AGATAGCGACGGTGGCGGTG+AGG | + | chr3_1:92053839-92053858 | None:intergenic | 65.0% |
| GGAGGAGATAGCGACGGTGG+CGG | + | chr3_1:92053844-92053863 | None:intergenic | 65.0% | |
| GAGGAAGAGAGCAGAGGCGG+CGG | + | chr3_1:92053865-92053884 | None:intergenic | 65.0% | |
| AATCGGGGAGGGAGTCGGTG+AGG | + | chr3_1:92053884-92053903 | None:intergenic | 65.0% | |
| GGTGGAGGATCTTCCTCCGG+TGG | - | chr3_1:92053930-92053949 | Msa0387950:intron | 65.0% | |
| GGAGGATCTTCCTCCGGTGG+TGG | - | chr3_1:92053933-92053952 | Msa0387950:intron | 65.0% | |
| ! | GGATCTTCCTCCGGTGGTGG+AGG | - | chr3_1:92053936-92053955 | Msa0387950:intron | 65.0% |
| !! | TCTTCCTCCGGTGGTGGAGG+TGG | - | chr3_1:92053939-92053958 | Msa0387950:intron | 65.0% |
| CCAACCACCACCTCCACCAC+CGG | + | chr3_1:92053949-92053968 | None:intergenic | 65.0% | |
| !! | GCGAGGAGGGCGTCCAACTT+TGG | - | chr3_1:92055104-92055123 | Msa0387950:CDS | 65.0% |
| CTGCAGGCTTCGCTTCAGCC+AGG | - | chr3_1:92055214-92055233 | Msa0387950:CDS | 65.0% | |
| CAGGCTTCGCTTCAGCCAGG+AGG | - | chr3_1:92055217-92055236 | Msa0387950:CDS | 65.0% | |
| ACGGCGGTGAGGAGGAGGAG+GGG | + | chr3_1:92053712-92053731 | None:intergenic | 70.0% | |
| GGCGGAGGAGATAGCGACGG+TGG | + | chr3_1:92053847-92053866 | None:intergenic | 70.0% | |
| GGCGGCGGAGGAGATAGCGA+CGG | + | chr3_1:92053850-92053869 | None:intergenic | 70.0% | |
| GAAGAGAGCAGAGGCGGCGG+AGG | + | chr3_1:92053862-92053881 | None:intergenic | 70.0% | |
| !! | TCCTCCGGTGGTGGAGGTGG+TGG | - | chr3_1:92053942-92053961 | Msa0387950:intron | 70.0% |
| ACCACCACCTCCACCACCGG+AGG | + | chr3_1:92053946-92053965 | None:intergenic | 70.0% | |
| !! | CCGGTGGTGGAGGTGGTGGT+TGG | - | chr3_1:92053946-92053965 | Msa0387950:intron | 70.0% |
| TCGTCGGCGAACGCGGTTGC+TGG | + | chr3_1:92054023-92054042 | None:intergenic | 70.0% | |
| ACGGCGGTGAGGAGGAGGAG+GGG | + | chr3_1:92053712-92053731 | None:intergenic | 70.0% | |
| GGCGGAGGAGATAGCGACGG+TGG | + | chr3_1:92053847-92053866 | None:intergenic | 70.0% | |
| GGCGGCGGAGGAGATAGCGA+CGG | + | chr3_1:92053850-92053869 | None:intergenic | 70.0% | |
| GAAGAGAGCAGAGGCGGCGG+AGG | + | chr3_1:92053862-92053881 | None:intergenic | 70.0% | |
| !! | TCCTCCGGTGGTGGAGGTGG+TGG | - | chr3_1:92053942-92053961 | Msa0387950:intron | 70.0% |
| ACCACCACCTCCACCACCGG+AGG | + | chr3_1:92053946-92053965 | None:intergenic | 70.0% | |
| !! | CCGGTGGTGGAGGTGGTGGT+TGG | - | chr3_1:92053946-92053965 | Msa0387950:intron | 70.0% |
| TCGTCGGCGAACGCGGTTGC+TGG | + | chr3_1:92054023-92054042 | None:intergenic | 70.0% | |
| ! | TTCTCCGGAGGTGGCGGCGG+AGG | - | chr3_1:92053909-92053928 | Msa0387950:CDS | 75.0% |
| TCCACCTCCGCCGCCACCTC+CGG | + | chr3_1:92053916-92053935 | None:intergenic | 75.0% | |
| GTTGGACGCCCTCCTCGCCC+AGG | + | chr3_1:92055102-92055121 | None:intergenic | 75.0% | |
| ! | TTCTCCGGAGGTGGCGGCGG+AGG | - | chr3_1:92053909-92053928 | Msa0387950:CDS | 75.0% |
| TCCACCTCCGCCGCCACCTC+CGG | + | chr3_1:92053916-92053935 | None:intergenic | 75.0% | |
| GTTGGACGCCCTCCTCGCCC+AGG | + | chr3_1:92055102-92055121 | None:intergenic | 75.0% | |
| !! | TCCGGAGGTGGCGGCGGAGG+TGG | - | chr3_1:92053912-92053931 | Msa0387950:CDS | 80.0% |
| !! | GGAGGTGGCGGCGGAGGTGG+AGG | - | chr3_1:92053915-92053934 | Msa0387950:CDS | 80.0% |
| !! | TCCGGAGGTGGCGGCGGAGG+TGG | - | chr3_1:92053912-92053931 | Msa0387950:CDS | 80.0% |
| !! | GGAGGTGGCGGCGGAGGTGG+AGG | - | chr3_1:92053915-92053934 | Msa0387950:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92053657 | 92055649 | 92053657 | ID=Msa0387950;Name=Msa0387950 |
| chr3_1 | mRNA | 92053657 | 92055649 | 92053657 | ID=Msa0387950-mRNA-1;Parent=Msa0387950;Name=Msa0387950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.25|0.2|0.6|1|1|5|0|491 |
| chr3_1 | exon | 92054746 | 92055649 | 92054746 | ID=Msa0387950-mRNA-1:exon:25821;Parent=Msa0387950-mRNA-1 |
| chr3_1 | exon | 92054499 | 92054653 | 92054499 | ID=Msa0387950-mRNA-1:exon:25820;Parent=Msa0387950-mRNA-1 |
| chr3_1 | exon | 92054181 | 92054402 | 92054181 | ID=Msa0387950-mRNA-1:exon:25819;Parent=Msa0387950-mRNA-1 |
| chr3_1 | exon | 92053892 | 92053938 | 92053892 | ID=Msa0387950-mRNA-1:exon:25818;Parent=Msa0387950-mRNA-1 |
| chr3_1 | exon | 92053657 | 92053804 | 92053657 | ID=Msa0387950-mRNA-1:exon:25817;Parent=Msa0387950-mRNA-1 |
| chr3_1 | CDS | 92054746 | 92055649 | 92054746 | ID=Msa0387950-mRNA-1:cds;Parent=Msa0387950-mRNA-1 |
| chr3_1 | CDS | 92054499 | 92054653 | 92054499 | ID=Msa0387950-mRNA-1:cds;Parent=Msa0387950-mRNA-1 |
| chr3_1 | CDS | 92054181 | 92054402 | 92054181 | ID=Msa0387950-mRNA-1:cds;Parent=Msa0387950-mRNA-1 |
| chr3_1 | CDS | 92053892 | 92053938 | 92053892 | ID=Msa0387950-mRNA-1:cds;Parent=Msa0387950-mRNA-1 |
| chr3_1 | CDS | 92053657 | 92053804 | 92053657 | ID=Msa0387950-mRNA-1:cds;Parent=Msa0387950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
