Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385450 | AES88250.1 | 87.931 | 116 | 1 | 2 | 47 | 149 | 1 | 116 | 1.51e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385450 | sp|B5LMP5|RK33_CICAR | 98.361 | 61 | 1 | 0 | 47 | 107 | 1 | 61 | 3.37e-39 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385450 | G7JH54 | 87.931 | 116 | 1 | 2 | 47 | 149 | 1 | 116 | 7.20e-64 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039200 | Msa1385450 | 0.802480 | 5.499888e-49 | -8.615850e-47 |
| Msa0087880 | Msa1385450 | 0.808582 | 2.885094e-50 | -8.615850e-47 |
| Msa0095140 | Msa1385450 | 0.822668 | 2.093993e-53 | -8.615850e-47 |
| Msa0095240 | Msa1385450 | 0.829889 | 3.998657e-55 | -8.615850e-47 |
| Msa0095270 | Msa1385450 | 0.814815 | 1.271322e-51 | -8.615850e-47 |
| Msa1354850 | Msa1385450 | 0.844983 | 5.392663e-59 | -8.615850e-47 |
| Msa1355020 | Msa1385450 | 0.822218 | 2.664090e-53 | -8.615850e-47 |
| Msa1380540 | Msa1385450 | 0.800197 | 1.613643e-48 | -8.615850e-47 |
| Msa1385450 | Msa1394090 | 0.817781 | 2.759221e-52 | -8.615850e-47 |
| Msa1385450 | Msa1394100 | 0.825765 | 3.920875e-54 | -8.615850e-47 |
| Msa1385450 | Msa1394280 | 0.829711 | 4.418430e-55 | -8.615850e-47 |
| Msa1385450 | Msa1415120 | 0.803580 | 3.257391e-49 | -8.615850e-47 |
| Msa0739570 | Msa1385450 | 0.809245 | 2.080977e-50 | -8.615850e-47 |
| Msa0133670 | Msa1385450 | 0.803881 | 2.821375e-49 | -8.615850e-47 |
| Msa0133880 | Msa1385450 | 0.804957 | 1.682924e-49 | -8.615850e-47 |
| Msa0134550 | Msa1385450 | 0.809952 | 1.467159e-50 | -8.615850e-47 |
| Msa0184120 | Msa1385450 | 0.805293 | 1.431832e-49 | -8.615850e-47 |
| Msa0221860 | Msa1385450 | 0.824375 | 8.350151e-54 | -8.615850e-47 |
| Msa1287160 | Msa1385450 | 0.802005 | 6.888867e-49 | -8.615850e-47 |
| Msa1079610 | Msa1385450 | 0.813308 | 2.734093e-51 | -8.615850e-47 |
| Msa1086020 | Msa1385450 | 0.842914 | 1.933170e-58 | -8.615850e-47 |
| Msa1086330 | Msa1385450 | 0.828386 | 9.255549e-55 | -8.615850e-47 |
| Msa1086340 | Msa1385450 | 0.868764 | 5.123997e-66 | -8.615850e-47 |
| Msa1086410 | Msa1385450 | 0.880436 | 5.500262e-70 | -8.615850e-47 |
| Msa1086520 | Msa1385450 | 0.844501 | 7.272457e-59 | -8.615850e-47 |
| Msa1086630 | Msa1385450 | 0.828212 | 1.019319e-54 | -8.615850e-47 |
| Msa1086690 | Msa1385450 | 0.832267 | 1.042055e-55 | -8.615850e-47 |
| Msa1086830 | Msa1385450 | 0.827385 | 1.610635e-54 | -8.615850e-47 |
| Msa1087000 | Msa1385450 | 0.864201 | 1.441749e-64 | -8.615850e-47 |
| Msa0268220 | Msa1385450 | 0.834441 | 2.992427e-56 | -8.615850e-47 |
| Msa0268340 | Msa1385450 | 0.835457 | 1.659502e-56 | -8.615850e-47 |
| Msa0268460 | Msa1385450 | 0.851899 | 6.568271e-61 | -8.615850e-47 |
| Msa0268500 | Msa1385450 | 0.837897 | 3.963376e-57 | -8.615850e-47 |
| Msa0268680 | Msa1385450 | 0.862213 | 5.943172e-64 | -8.615850e-47 |
| Msa0268690 | Msa1385450 | 0.855805 | 4.928528e-62 | -8.615850e-47 |
| Msa0268900 | Msa1385450 | 0.864954 | 8.385132e-65 | -8.615850e-47 |
| Msa0269100 | Msa1385450 | 0.853801 | 1.878789e-61 | -8.615850e-47 |
| Msa0306130 | Msa1385450 | 0.816539 | 5.250114e-52 | -8.615850e-47 |
| Msa0344240 | Msa1385450 | 0.822222 | 2.658193e-53 | -8.615850e-47 |
| Msa0582570 | Msa1385450 | 0.817076 | 3.976762e-52 | -8.615850e-47 |
| Msa0582580 | Msa1385450 | 0.823404 | 1.410908e-53 | -8.615850e-47 |
| Msa0860270 | Msa1385450 | 0.818311 | 2.094159e-52 | -8.615850e-47 |
| Msa0925020 | Msa1385450 | 0.821191 | 4.603089e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385450 | MtrunA17_CPg0492781 | 98.361 | 61 | 1 | 0 | 47 | 107 | 1 | 61 | 3.97e-40 | 129 |
| Msa1385450 | MtrunA17_Chr4g0015791 | 98.361 | 61 | 1 | 0 | 47 | 107 | 1 | 61 | 3.97e-40 | 129 |
| Msa1385450 | MtrunA17_Chr8g0355601 | 96.721 | 61 | 2 | 0 | 47 | 107 | 1 | 61 | 2.60e-39 | 127 |
| Msa1385450 | MtrunA17_Chr7g0224991 | 94.872 | 39 | 2 | 0 | 69 | 107 | 6 | 44 | 5.03e-22 | 83.2 |
| Msa1385450 | MtrunA17_Chr6g0465781 | 100.000 | 31 | 0 | 0 | 119 | 149 | 1 | 31 | 1.44e-14 | 64.3 |
| Msa1385450 | MtrunA17_Chr6g0466591 | 100.000 | 31 | 0 | 0 | 119 | 149 | 1 | 31 | 2.41e-14 | 65.5 |
| Msa1385450 | MtrunA17_Chr4g0016881 | 90.625 | 32 | 3 | 0 | 15 | 46 | 1 | 32 | 3.47e-14 | 63.2 |
| Msa1385450 | MtrunA17_CPg0492791 | 90.625 | 32 | 3 | 0 | 15 | 46 | 1 | 32 | 9.19e-14 | 62.0 |
| Msa1385450 | MtrunA17_Chr4g0015781 | 90.625 | 32 | 3 | 0 | 15 | 46 | 1 | 32 | 9.19e-14 | 62.0 |
| Msa1385450 | MtrunA17_Chr4g0028951 | 90.625 | 32 | 3 | 0 | 15 | 46 | 1 | 32 | 9.19e-14 | 62.0 |
| Msa1385450 | MtrunA17_Chr8g0355611 | 90.625 | 32 | 3 | 0 | 15 | 46 | 1 | 32 | 9.19e-14 | 62.0 |
| Msa1385450 | MtrunA17_Chr7g0237831 | 100.000 | 29 | 0 | 0 | 121 | 149 | 5 | 33 | 9.78e-13 | 60.1 |
| Msa1385450 | MtrunA17_Chr4g0016891 | 100.000 | 29 | 0 | 0 | 121 | 149 | 5 | 33 | 1.72e-12 | 60.1 |
| Msa1385450 | MtrunA17_Chr4g0015801 | 93.939 | 33 | 0 | 1 | 119 | 149 | 1 | 33 | 2.28e-12 | 60.5 |
| Msa1385450 | MtrunA17_CPg0492771 | 93.939 | 33 | 0 | 1 | 119 | 149 | 1 | 33 | 2.28e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385450 | ATCG00640.1 | 77.049 | 61 | 14 | 0 | 47 | 107 | 1 | 61 | 1.25e-31 | 108 |
| Msa1385450 | ATCG00630.1 | 81.250 | 32 | 6 | 0 | 15 | 46 | 1 | 32 | 3.02e-11 | 55.8 |
Find 22 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACGAATAACTGTTATTT+TGG | 0.125276 | tig0020748:-131246 | Msa1385450:CDS |
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | tig0020748:-131202 | Msa1385450:CDS |
| AATCGTATGTTTGCAACAAA+AGG | 0.396841 | tig0020748:+131106 | None:intergenic |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | tig0020748:-131872 | Msa1385450:CDS |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | tig0020748:-131201 | Msa1385450:CDS |
| AGTTTGTCCCCGATCCAATC+GGG | 0.455483 | tig0020748:-130808 | Msa1385450:CDS |
| GAGTTTGTCCCCGATCCAAT+CGG | 0.465376 | tig0020748:-130809 | Msa1385450:CDS |
| TATTCGTATATCTTTACCCT+TGG | 0.471315 | tig0020748:+131259 | None:intergenic |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | tig0020748:-131855 | Msa1385450:CDS |
| CCAAAGGAGGTTCATGGCCA+AGG | 0.512674 | tig0020748:-131276 | Msa1385450:intron |
| ACACAATACACCTAGTCGAT+TGG | 0.524208 | tig0020748:-131147 | Msa1385450:CDS |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | tig0020748:-131865 | Msa1385450:CDS |
| ATCGTATGTTTGCAACAAAA+GGG | 0.538893 | tig0020748:+131107 | None:intergenic |
| TTTCTCAATTCCAATCGACT+AGG | 0.574270 | tig0020748:+131137 | None:intergenic |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | tig0020748:-131886 | Msa1385450:CDS |
| GAGTCGCTTAGATTTATCCA+TGG | 0.585856 | tig0020748:+130861 | None:intergenic |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | tig0020748:+131870 | None:intergenic |
| CAAAGGAGGTTCATGGCCAA+GGG | 0.605158 | tig0020748:-131275 | Msa1385450:intron |
| GTATAGGAATAAACAAACCA+TGG | 0.629025 | tig0020748:-130878 | Msa1385450:CDS |
| GTTTGTCCCCGATCCAATCG+GGG | 0.647747 | tig0020748:-130807 | Msa1385450:CDS |
| TTTGTCCCCGATCCAATCGG+GGG | 0.661952 | tig0020748:-130806 | Msa1385450:CDS |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | tig0020748:-131200 | Msa1385450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGCAAATTAATTTAATAA+AGG | - | tig0020748:131045-131064 | Msa1385450:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | tig0020748:131138-131157 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | - | tig0020748:131294-131313 | Msa1385450:intron | 15.0% |
| !!! | AAATCCTTTTTTATAAGAAA+TGG | - | tig0020748:131795-131814 | Msa1385450:intron | 15.0% |
| !!! | AATCCTTTTTTATAAGAAAT+GGG | - | tig0020748:131796-131815 | Msa1385450:intron | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | tig0020748:131045-131064 | Msa1385450:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | tig0020748:131138-131157 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | - | tig0020748:131294-131313 | Msa1385450:intron | 15.0% |
| !!! | AAATCCTTTTTTATAAGAAA+TGG | - | tig0020748:131795-131814 | Msa1385450:intron | 15.0% |
| !!! | AATCCTTTTTTATAAGAAAT+GGG | - | tig0020748:131796-131815 | Msa1385450:intron | 15.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | + | tig0020748:130769-130788 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | tig0020748:130768-130787 | Msa1385450:CDS | 20.0% |
| !! | AATAACTAGAATCAAAAAAG+GGG | + | tig0020748:130921-130940 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+GGG | + | tig0020748:130922-130941 | None:intergenic | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | tig0020748:130975-130994 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | tig0020748:131048-131067 | Msa1385450:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | tig0020748:131054-131073 | Msa1385450:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | tig0020748:131169-131188 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | tig0020748:131458-131477 | Msa1385450:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | tig0020748:131494-131513 | Msa1385450:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | tig0020748:131628-131647 | Msa1385450:intron | 20.0% |
| !! | AATCCCATTTCTTATAAAAA+AGG | + | tig0020748:131802-131821 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | tig0020748:131804-131823 | Msa1385450:intron | 20.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | + | tig0020748:130769-130788 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | tig0020748:130768-130787 | Msa1385450:CDS | 20.0% |
| !! | AATAACTAGAATCAAAAAAG+GGG | + | tig0020748:130921-130940 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+GGG | + | tig0020748:130922-130941 | None:intergenic | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | tig0020748:130975-130994 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | tig0020748:131048-131067 | Msa1385450:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | tig0020748:131054-131073 | Msa1385450:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | tig0020748:131169-131188 | None:intergenic | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | tig0020748:131458-131477 | Msa1385450:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | tig0020748:131494-131513 | Msa1385450:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | - | tig0020748:131628-131647 | Msa1385450:intron | 20.0% |
| !! | AATCCCATTTCTTATAAAAA+AGG | + | tig0020748:131802-131821 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | - | tig0020748:131804-131823 | Msa1385450:intron | 20.0% |
| ! | CCAATAACTAGAATCAAAAA+AGG | + | tig0020748:130923-130942 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGATTCTAGTTAT+TGG | - | tig0020748:130920-130939 | Msa1385450:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | tig0020748:130992-131011 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | tig0020748:130993-131012 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | tig0020748:131173-131192 | Msa1385450:CDS | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | tig0020748:131174-131193 | Msa1385450:CDS | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | tig0020748:131412-131431 | Msa1385450:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | tig0020748:131669-131688 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | tig0020748:131670-131689 | None:intergenic | 25.0% |
| ! | CCAATAACTAGAATCAAAAA+AGG | + | tig0020748:130923-130942 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGATTCTAGTTAT+TGG | - | tig0020748:130920-130939 | Msa1385450:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | tig0020748:130992-131011 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | tig0020748:130993-131012 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | tig0020748:131173-131192 | Msa1385450:CDS | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | tig0020748:131174-131193 | Msa1385450:CDS | 25.0% |
| ! | AGTGAATCAAAAAAAACCAA+AGG | - | tig0020748:131412-131431 | Msa1385450:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | + | tig0020748:131669-131688 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | + | tig0020748:131670-131689 | None:intergenic | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | tig0020748:130771-130790 | Msa1385450:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | tig0020748:130809-130828 | Msa1385450:CDS | 30.0% | |
| GAACATTCGTTATATTATCC+CGG | - | tig0020748:130882-130901 | Msa1385450:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | tig0020748:130925-130944 | Msa1385450:intron | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | tig0020748:131080-131099 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | tig0020748:131153-131172 | Msa1385450:CDS | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | - | tig0020748:131177-131196 | Msa1385450:CDS | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | tig0020748:131415-131434 | Msa1385450:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | tig0020748:131448-131467 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | tig0020748:131502-131521 | Msa1385450:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | tig0020748:131503-131522 | Msa1385450:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | tig0020748:131504-131523 | Msa1385450:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | tig0020748:131600-131619 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | tig0020748:131601-131620 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | tig0020748:131826-131845 | Msa1385450:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | tig0020748:131873-131892 | Msa1385450:CDS | 30.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | tig0020748:130771-130790 | Msa1385450:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | tig0020748:130809-130828 | Msa1385450:CDS | 30.0% | |
| GAACATTCGTTATATTATCC+CGG | - | tig0020748:130882-130901 | Msa1385450:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | tig0020748:130925-130944 | Msa1385450:intron | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | tig0020748:131080-131099 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | tig0020748:131153-131172 | Msa1385450:CDS | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | - | tig0020748:131177-131196 | Msa1385450:CDS | 30.0% | |
| GAATCAAAAAAAACCAAAGG+AGG | - | tig0020748:131415-131434 | Msa1385450:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | tig0020748:131448-131467 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | tig0020748:131502-131521 | Msa1385450:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | tig0020748:131503-131522 | Msa1385450:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | tig0020748:131504-131523 | Msa1385450:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | tig0020748:131600-131619 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | tig0020748:131601-131620 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | - | tig0020748:131826-131845 | Msa1385450:intron | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | - | tig0020748:131873-131892 | Msa1385450:CDS | 30.0% |
| ! | GTGAAATTAGGAGTTTTTCC+AGG | - | tig0020748:131082-131101 | Msa1385450:intron | 35.0% |
| ACTTCAATTCCATTGAAACC+TGG | + | tig0020748:131103-131122 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | - | tig0020748:131178-131197 | Msa1385450:CDS | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | tig0020748:131373-131392 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | tig0020748:131422-131441 | Msa1385450:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | tig0020748:131570-131589 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | tig0020748:131810-131829 | Msa1385450:intron | 35.0% |
| ! | GTGAAATTAGGAGTTTTTCC+AGG | - | tig0020748:131082-131101 | Msa1385450:intron | 35.0% |
| ACTTCAATTCCATTGAAACC+TGG | + | tig0020748:131103-131122 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | - | tig0020748:131178-131197 | Msa1385450:CDS | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | tig0020748:131373-131392 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | - | tig0020748:131422-131441 | Msa1385450:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | tig0020748:131570-131589 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | - | tig0020748:131810-131829 | Msa1385450:intron | 35.0% |
| GATTTGGCCTCAGTGAAATT+AGG | - | tig0020748:131070-131089 | Msa1385450:intron | 40.0% | |
| ! | GGAGTTTTTCCAGGTTTCAA+TGG | - | tig0020748:131091-131110 | Msa1385450:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | tig0020748:131557-131576 | Msa1385450:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | tig0020748:131651-131670 | Msa1385450:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | tig0020748:131846-131865 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | tig0020748:131070-131089 | Msa1385450:intron | 40.0% | |
| ! | GGAGTTTTTCCAGGTTTCAA+TGG | - | tig0020748:131091-131110 | Msa1385450:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | tig0020748:131557-131576 | Msa1385450:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | - | tig0020748:131651-131670 | Msa1385450:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | + | tig0020748:131846-131865 | None:intergenic | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | tig0020748:130837-130856 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | tig0020748:130904-130923 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | tig0020748:130930-130949 | Msa1385450:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | tig0020748:130931-130950 | Msa1385450:intron | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | tig0020748:131913-131932 | None:intergenic | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | tig0020748:130837-130856 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | + | tig0020748:130904-130923 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | tig0020748:130930-130949 | Msa1385450:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | tig0020748:130931-130950 | Msa1385450:intron | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | + | tig0020748:131913-131932 | None:intergenic | 45.0% | |
| !!! | ATATTTATATTTGTTATATA+AGG | + | tig0020748:131742-131761 | None:intergenic | 5.0% |
| !!! | ATATTTATATTTGTTATATA+AGG | + | tig0020748:131742-131761 | None:intergenic | 5.0% |
| ATATCTCTCTGTGGCACCAG+TGG | - | tig0020748:130818-130837 | Msa1385450:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | tig0020748:130832-130851 | Msa1385450:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | tig0020748:130839-130858 | Msa1385450:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | tig0020748:130903-130922 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | tig0020748:130932-130951 | Msa1385450:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | tig0020748:131429-131448 | Msa1385450:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | tig0020748:131654-131673 | Msa1385450:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | tig0020748:131895-131914 | Msa1385450:CDS | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | tig0020748:131896-131915 | Msa1385450:CDS | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | tig0020748:131908-131927 | None:intergenic | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | tig0020748:130818-130837 | Msa1385450:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | tig0020748:130832-130851 | Msa1385450:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | tig0020748:130839-130858 | Msa1385450:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | + | tig0020748:130903-130922 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | tig0020748:130932-130951 | Msa1385450:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | tig0020748:131429-131448 | Msa1385450:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | - | tig0020748:131654-131673 | Msa1385450:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | - | tig0020748:131895-131914 | Msa1385450:CDS | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | - | tig0020748:131896-131915 | Msa1385450:CDS | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | + | tig0020748:131908-131927 | None:intergenic | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | tig0020748:130849-130868 | Msa1385450:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | tig0020748:131431-131450 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | tig0020748:131428-131447 | Msa1385450:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | tig0020748:131897-131916 | Msa1385450:CDS | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | tig0020748:131898-131917 | Msa1385450:CDS | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | tig0020748:131907-131926 | None:intergenic | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | tig0020748:130849-130868 | Msa1385450:CDS | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | + | tig0020748:131431-131450 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | - | tig0020748:131428-131447 | Msa1385450:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | - | tig0020748:131897-131916 | Msa1385450:CDS | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | - | tig0020748:131898-131917 | Msa1385450:CDS | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | + | tig0020748:131907-131926 | None:intergenic | 55.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | tig0020748:131906-131925 | None:intergenic | 60.0% | |
| TCGATCCCCCGATTGGATCG+GGG | + | tig0020748:131906-131925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020748 | gene | 130759 | 131967 | 130759 | ID=Msa1385450;Name=Msa1385450 |
| tig0020748 | mRNA | 130759 | 131967 | 130759 | ID=Msa1385450-mRNA-1;Parent=Msa1385450;Name=Msa1385450-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|3|0|158 |
| tig0020748 | exon | 131837 | 131967 | 131837 | ID=Msa1385450-mRNA-1:exon:9576;Parent=Msa1385450-mRNA-1 |
| tig0020748 | exon | 131103 | 131292 | 131103 | ID=Msa1385450-mRNA-1:exon:9575;Parent=Msa1385450-mRNA-1 |
| tig0020748 | exon | 130759 | 130914 | 130759 | ID=Msa1385450-mRNA-1:exon:9574;Parent=Msa1385450-mRNA-1 |
| tig0020748 | CDS | 131837 | 131967 | 131837 | ID=Msa1385450-mRNA-1:cds;Parent=Msa1385450-mRNA-1 |
| tig0020748 | CDS | 131103 | 131292 | 131103 | ID=Msa1385450-mRNA-1:cds;Parent=Msa1385450-mRNA-1 |
| tig0020748 | CDS | 130759 | 130914 | 130759 | ID=Msa1385450-mRNA-1:cds;Parent=Msa1385450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
