AlfalfaGEDB | Msa1380540

M. sativa cultivar zhongmu-4 / Msa1380540

KEGG: K02108
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1902600
PFAM: PF01701.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380540	AET02655.1	89.691	97	3	1	15	104	1	97	2.91e-54	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380540	sp\|B5LMP5\|RK33_CICAR	96.667	60	2	0	46	105	7	66	2.77e-37	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380540	G7L7R4	89.691	97	3	1	15	104	1	97	1.39e-54	174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016830	Msa1380540	0.830660	2.591123e-55	-8.615850e-47
Msa0030710	Msa1380540	0.828112	1.077275e-54	-8.615850e-47
Msa0034800	Msa1380540	0.845530	3.834329e-59	-8.615850e-47
Msa0035090	Msa1380540	0.825829	3.786017e-54	-8.615850e-47
Msa0039200	Msa1380540	0.852401	4.728544e-61	-8.615850e-47
Msa0040190	Msa1380540	0.848432	6.152347e-60	-8.615850e-47
Msa0065190	Msa1380540	0.839013	2.041740e-57	-8.615850e-47
Msa0076280	Msa1380540	0.805991	1.021520e-49	-8.615850e-47
Msa0083200	Msa1380540	0.816068	6.690145e-52	-8.615850e-47
Msa0083570	Msa1380540	0.830562	2.739044e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380540	MtrunA17_CPg0492781	98.333	60	1	46	105	7	66	1.14e-38	124
Msa1380540	MtrunA17_Chr4g0015791	98.333	60	1	46	105	7	66	1.14e-38	124
Msa1380540	MtrunA17_Chr8g0355601	96.610	59	2	46	104	7	65	1.73e-37	120
Msa1380540	MtrunA17_Chr7g0224991	95.455	44	2	62	105	6	49	7.95e-26	90.9
Msa1380540	MtrunA17_CPg0492791	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa1380540	MtrunA17_Chr4g0015781	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa1380540	MtrunA17_Chr4g0028951	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa1380540	MtrunA17_Chr8g0355611	93.750	32	2	15	46	1	32	2.06e-15	64.3
Msa1380540	MtrunA17_Chr4g0016881	96.774	31	1	15	45	1	31	5.83e-15	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380540	ATCG00640.1	75.000	60	15	0	46	105	7	66	2.13e-29	100
Msa1380540	ATCG00630.1	84.375	32	5	0	15	46	1	32	8.57e-13	58.2

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Find 13 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATAGAGTACTTGCCAC+TGG	0.586013	tig0020386:+6690	None:intergenic
AATCGTATGTTTGCAACAAA+AGG	0.396841	tig0020386:+5925	None:intergenic
ACACAATACACCTAGTCGAT+TGG	0.524208	tig0020386:-5966	Msa1380540:CDS
AGAGTGTTAATAAGGAATCT+AGG	0.329597	tig0020386:-6021	Msa1380540:CDS
AGTGTTAATAAGGAATCTAG+GGG	0.667965	tig0020386:-6019	Msa1380540:CDS
ATATCTCTCTGTGGCACCAG+TGG	0.585814	tig0020386:-6706	Msa1380540:CDS
ATCGTATGTTTGCAACAAAA+GGG	0.538893	tig0020386:+5926	None:intergenic
CACCAGTGGCAAGTACTCTA+TGG	0.426592	tig0020386:-6692	Msa1380540:CDS
CTATGGTTCGCGGTTCTAGC+AGG	0.487956	tig0020386:-6675	Msa1380540:CDS
GAGTGTTAATAAGGAATCTA+GGG	0.452009	tig0020386:-6020	Msa1380540:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACAAGAAAAAAACGAAGG+AGG	-	tig0020386:5916-5935	Msa1380540:CDS	30.0%
TCTAAAAACATATCTCTCTG+TGG	-	tig0020386:5954-5973	Msa1380540:CDS	30.0%
AGAAATCAATCGTTTATTCC+CGG	-	tig0020386:6026-6045	Msa1380540:CDS	30.0%
AAAAACTCCTAATTTCACTG+AGG	+	tig0020386:6225-6244	None:intergenic	30.0%
TAATAGAGTGAGACCATAAA+TGG	-	tig0020386:6299-6318	Msa1380540:intron	30.0%
ATTGTAATAGAATACTTGGG+CGG	-	tig0020386:6323-6342	Msa1380540:intron	30.0%
GAATCAAAAAAAACCAAAGG+AGG	-	tig0020386:6561-6580	Msa1380540:intron	30.0%
TATTCGTATATCTTTACCCT+TGG	+	tig0020386:6594-6613	None:intergenic	30.0%
GAGTGTTAATAAGGAATCTA+GGG	-	tig0020386:6649-6668	Msa1380540:intron	30.0%
AGTGTTAATAAGGAATCTAG+GGG	-	tig0020386:6650-6669	Msa1380540:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020386	gene	5904	6787	5904	ID=Msa1380540;Name=Msa1380540
tig0020386	mRNA	5904	6787	5904	ID=Msa1380540-mRNA-1;Parent=Msa1380540;Name=Msa1380540-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|0\|0\|2\|0\|105
tig0020386	exon	6655	6787	6655	ID=Msa1380540-mRNA-1:exon:7199;Parent=Msa1380540-mRNA-1
tig0020386	exon	5904	6088	5904	ID=Msa1380540-mRNA-1:exon:7198;Parent=Msa1380540-mRNA-1
tig0020386	CDS	6655	6787	6655	ID=Msa1380540-mRNA-1:cds;Parent=Msa1380540-mRNA-1
tig0020386	CDS	5904	6088	5904	ID=Msa1380540-mRNA-1:cds;Parent=Msa1380540-mRNA-1

Gene Sequence	>Msa1380540 ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCATATACGAATAACTGTTATTTTGGAATGTAGCAGTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGGTATTTCTAGATATATTACTCAAAAGAATCGACACAATACACCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTTTTGTTGCAAACATACGATTCACGTCGAGATAAAGAAATAG
Protein sequence	>Msa1380540 MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINHIRITVILECSSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHVEIKK*