AlfalfaGEDB | Msa1087000

M. sativa cultivar zhongmu-4 / Msa1087000

KEGG: K02108|K02963
GO: GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005829 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019866 GO:0022411 GO:0022626 GO:0022627 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0070126 GO:0071704 GO:0071840 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00471.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087000	AES88250.1	83.010	206	11	4	1	182	1	206	1.94e-101	301

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087000	sp\|P49169\|RR18_PEA	82.727	110	19	0	73	182	1	110	1.61e-54	171

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087000	G7JH54	83.010	206	11	4	1	182	1	206	9.24e-102	301

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030030	Msa1087000	0.816775	4.647506e-52	-8.615850e-47
Msa0032040	Msa1087000	0.816105	6.563962e-52	-8.615850e-47
Msa0039200	Msa1087000	0.857028	2.156807e-62	-8.615850e-47
Msa0040190	Msa1087000	0.858592	7.409222e-63	-8.615850e-47
Msa0051100	Msa1087000	0.804864	1.759924e-49	-8.615850e-47
Msa0077330	Msa1087000	0.800682	1.285257e-48	-8.615850e-47
Msa0086820	Msa1087000	0.854459	1.213985e-61	-8.615850e-47
Msa0087880	Msa1087000	0.863352	2.647837e-64	-8.615850e-47
Msa0095140	Msa1087000	0.880516	5.149470e-70	-8.615850e-47
Msa0095240	Msa1087000	0.911490	5.736355e-83	-8.615850e-47
Msa0095270	Msa1087000	0.894595	2.127533e-75	-8.615850e-47
Msa0103060	Msa1087000	0.805794	1.124115e-49	-8.615850e-47
Msa0606060	Msa1087000	0.801380	9.251629e-49	-8.615850e-47
Msa0606680	Msa1087000	0.822390	2.430123e-53	-8.615850e-47
Msa0619330	Msa1087000	0.801280	9.699052e-49	-8.615850e-47
Msa0626890	Msa1087000	0.803673	3.116304e-49	-8.615850e-47
Msa0635990	Msa1087000	0.824716	6.943251e-54	-8.615850e-47
Msa0653710	Msa1087000	0.801213	1.000990e-48	-8.615850e-47
Msa0668630	Msa1087000	0.890653	8.113006e-74	-8.615850e-47
Msa0686610	Msa1087000	0.801696	7.971699e-49	-8.615850e-47
Msa0687320	Msa1087000	0.803455	3.458390e-49	-8.615850e-47
Msa0706710	Msa1087000	0.813840	2.088354e-51	-8.615850e-47
Msa0721150	Msa1087000	0.802403	5.703546e-49	-8.615850e-47
Msa0727020	Msa1087000	0.809450	1.881001e-50	-8.615850e-47
Msa0727040	Msa1087000	0.827380	1.615132e-54	-8.615850e-47
Msa0736930	Msa1087000	0.811211	7.840302e-51	-8.615850e-47
Msa0739570	Msa1087000	0.831712	1.429025e-55	-8.615850e-47
Msa0761760	Msa1087000	0.813054	3.108433e-51	-8.615850e-47
Msa0766880	Msa1087000	0.830061	3.629493e-55	-8.615850e-47
Msa0772210	Msa1087000	0.841700	4.052085e-58	-8.615850e-47
Msa0778060	Msa1087000	0.811188	7.932916e-51	-8.615850e-47
Msa0782330	Msa1087000	0.820137	8.041036e-53	-8.615850e-47
Msa0801390	Msa1087000	0.827875	1.228865e-54	-8.615850e-47
Msa0804930	Msa1087000	0.815079	1.110888e-51	-8.615850e-47
Msa0839730	Msa1087000	0.843405	1.430315e-58	-8.615850e-47
Msa0842240	Msa1087000	0.809239	2.087750e-50	-8.615850e-47
Msa0133670	Msa1087000	0.857900	1.190557e-62	-8.615850e-47
Msa0133880	Msa1087000	0.859839	3.133171e-63	-8.615850e-47
Msa0134550	Msa1087000	0.860678	1.747265e-63	-8.615850e-47
Msa0141670	Msa1087000	0.811770	5.929437e-51	-8.615850e-47
Msa0156780	Msa1087000	0.814408	1.564129e-51	-8.615850e-47
Msa0181290	Msa1087000	0.835134	2.001912e-56	-8.615850e-47
Msa0184120	Msa1087000	0.860236	2.378024e-63	-8.615850e-47
Msa0189050	Msa1087000	0.843278	1.546102e-58	-8.615850e-47
Msa0193200	Msa1087000	0.804057	2.592706e-49	-8.615850e-47
Msa0197750	Msa1087000	-0.804295	2.313775e-49	-8.615850e-47
Msa0221860	Msa1087000	0.884916	1.273623e-71	-8.615850e-47
Msa0227290	Msa1087000	0.823035	1.719823e-53	-8.615850e-47
Msa0231310	Msa1087000	0.850235	1.935881e-60	-8.615850e-47
Msa0380430	Msa1087000	0.801413	9.111722e-49	-8.615850e-47
Msa0398610	Msa1087000	0.851299	9.712239e-61	-8.615850e-47
Msa0398620	Msa1087000	0.817837	2.680504e-52	-8.615850e-47
Msa0418000	Msa1087000	0.816872	4.419160e-52	-8.615850e-47
Msa0423600	Msa1087000	0.831243	1.864206e-55	-8.615850e-47
Msa0427050	Msa1087000	0.829497	4.980781e-55	-8.615850e-47
Msa0440110	Msa1087000	0.812445	4.224281e-51	-8.615850e-47
Msa0449900	Msa1087000	0.893152	8.196685e-75	-8.615850e-47
Msa0456480	Msa1087000	0.803532	3.332761e-49	-8.615850e-47
Msa0459120	Msa1087000	0.837135	6.215529e-57	-8.615850e-47
Msa0463960	Msa1087000	0.804984	1.661591e-49	-8.615850e-47
Msa0470650	Msa1087000	0.825148	5.489700e-54	-8.615850e-47
Msa0471080	Msa1087000	0.810812	9.566820e-51	-8.615850e-47
Msa0471090	Msa1087000	0.802604	5.185051e-49	-8.615850e-47
Msa0473450	Msa1087000	0.808238	3.416687e-50	-8.615850e-47
Msa0475360	Msa1087000	0.831687	1.449714e-55	-8.615850e-47
Msa0475740	Msa1087000	0.805065	1.598285e-49	-8.615850e-47
Msa0475830	Msa1087000	0.864021	1.640470e-64	-8.615850e-47
Msa0983670	Msa1087000	0.860878	1.519394e-63	-8.615850e-47
Msa0988500	Msa1087000	0.820871	5.454296e-53	-8.615850e-47
Msa1016130	Msa1087000	0.825234	5.237820e-54	-8.615850e-47
Msa1024580	Msa1087000	0.817314	3.516212e-52	-8.615850e-47
Msa1033160	Msa1087000	0.803409	3.534553e-49	-8.615850e-47
Msa1036350	Msa1087000	0.807383	5.192609e-50	-8.615850e-47
Msa1038820	Msa1087000	0.800831	1.198481e-48	-8.615850e-47
Msa1049440	Msa1087000	0.807727	4.388720e-50	-8.615850e-47
Msa1054890	Msa1087000	0.801519	8.664724e-49	-8.615850e-47
Msa1063180	Msa1087000	0.817274	3.590486e-52	-8.615850e-47
Msa1079610	Msa1087000	0.870386	1.517131e-66	-8.615850e-47
Msa1081600	Msa1087000	0.828241	1.003176e-54	-8.615850e-47
Msa1086020	Msa1087000	0.908281	2.029654e-81	-8.615850e-47
Msa1086060	Msa1087000	0.822593	2.180737e-53	-8.615850e-47
Msa1086160	Msa1087000	0.826038	3.377257e-54	-8.615850e-47
Msa1086170	Msa1087000	0.805725	1.162037e-49	-8.615850e-47
Msa1086260	Msa1087000	0.821075	4.895124e-53	-8.615850e-47
Msa1086290	Msa1087000	0.811460	6.924250e-51	-8.615850e-47
Msa1086330	Msa1087000	0.898952	3.201644e-77	-8.615850e-47
Msa1086340	Msa1087000	0.937554	2.869609e-98	-8.615850e-47
Msa1086370	Msa1087000	0.827725	1.335105e-54	-8.615850e-47
Msa1086410	Msa1087000	0.953310	3.633239e-111	-8.615850e-47
Msa1086440	Msa1087000	0.822081	2.866092e-53	-8.615850e-47
Msa1086520	Msa1087000	0.937466	3.312333e-98	-8.615850e-47
Msa1086630	Msa1087000	0.893299	7.152722e-75	-8.615850e-47
Msa1086690	Msa1087000	0.941846	2.038120e-101	-8.615850e-47
Msa1086830	Msa1087000	0.887434	1.431499e-72	-8.615850e-47
Msa1086870	Msa1087000	0.808206	3.469921e-50	-8.615850e-47
Msa1087000	Msa1102180	0.805072	1.592682e-49	-8.615850e-47
Msa1087000	Msa1108530	0.830126	3.500118e-55	-8.615850e-47
Msa1087000	Msa1123340	0.818471	1.926790e-52	-8.615850e-47
Msa1087000	Msa1124440	0.845371	4.233493e-59	-8.615850e-47
Msa1087000	Msa1126910	0.819533	1.104950e-52	-8.615850e-47
Msa1087000	Msa1130070	0.812403	4.314991e-51	-8.615850e-47
Msa1087000	Msa1152280	0.830932	2.223107e-55	-8.615850e-47
Msa1087000	Msa1157160	0.821957	3.063199e-53	-8.615850e-47
Msa1087000	Msa1161160	0.832520	9.021214e-56	-8.615850e-47
Msa1087000	Msa1166370	0.827362	1.631608e-54	-8.615850e-47
Msa1087000	Msa1168130	0.834744	2.510339e-56	-8.615850e-47
Msa1087000	Msa1199690	0.807634	4.593034e-50	-8.615850e-47
Msa1087000	Msa1204110	0.805058	1.603066e-49	-8.615850e-47
Msa1087000	Msa1209650	0.808813	2.575604e-50	-8.615850e-47
Msa1087000	Msa1211880	0.848872	4.645974e-60	-8.615850e-47
Msa1087000	Msa1214900	0.805977	1.028718e-49	-8.615850e-47
Msa1087000	Msa1221570	-0.806816	6.845674e-50	-8.615850e-47
Msa1087000	Msa1231520	0.800750	1.244969e-48	-8.615850e-47
Msa1087000	Msa1233770	0.812011	5.254954e-51	-8.615850e-47
Msa1087000	Msa1246420	0.813674	2.270816e-51	-8.615850e-47
Msa1087000	Msa1252040	0.811667	6.241653e-51	-8.615850e-47
Msa1087000	Msa1262310	0.806161	9.406759e-50	-8.615850e-47
Msa1087000	Msa1276080	0.805345	1.396387e-49	-8.615850e-47
Msa1087000	Msa1280020	0.813710	2.229625e-51	-8.615850e-47
Msa1087000	Msa1287160	0.826038	3.376661e-54	-8.615850e-47
Msa1087000	Msa1287340	0.817015	4.105796e-52	-8.615850e-47
Msa1087000	Msa1298740	0.812360	4.408540e-51	-8.615850e-47
Msa1087000	Msa1332180	0.805029	1.625983e-49	-8.615850e-47
Msa1087000	Msa1354850	0.911300	7.109094e-83	-8.615850e-47
Msa1087000	Msa1355020	0.894108	3.360266e-75	-8.615850e-47
Msa1087000	Msa1355260	0.837050	6.532514e-57	-8.615850e-47
Msa1087000	Msa1366700	0.801206	1.004679e-48	-8.615850e-47
Msa1087000	Msa1371250	0.813260	2.801349e-51	-8.615850e-47
Msa1087000	Msa1379370	0.810087	1.372008e-50	-8.615850e-47
Msa1087000	Msa1380540	0.865833	4.430839e-65	-8.615850e-47
Msa1087000	Msa1384980	0.801976	6.983687e-49	-8.615850e-47
Msa1087000	Msa1385450	0.864201	1.441749e-64	-8.615850e-47
Msa1087000	Msa1385940	0.811177	7.977038e-51	-8.615850e-47
Msa1087000	Msa1387090	0.840784	7.057284e-58	-8.615850e-47
Msa1087000	Msa1390410	0.847215	1.331282e-59	-8.615850e-47
Msa1087000	Msa1394090	0.893149	8.225575e-75	-8.615850e-47
Msa1087000	Msa1394100	0.912959	1.070687e-83	-8.615850e-47
Msa1087000	Msa1394170	0.803828	2.894028e-49	-8.615850e-47
Msa1087000	Msa1394280	0.887231	1.711510e-72	-8.615850e-47
Msa1087000	Msa1400600	0.814802	1.279463e-51	-8.615850e-47
Msa1087000	Msa1408190	0.803121	4.055566e-49	-8.615850e-47
Msa1087000	Msa1415120	0.859131	5.113319e-63	-8.615850e-47
Msa1087000	Msa1428440	0.840074	1.082373e-57	-8.615850e-47
Msa1087000	Msa1432350	0.800276	1.555041e-48	-8.615850e-47
Msa1087000	Msa1439160	0.811501	6.783523e-51	-8.615850e-47
Msa1087000	Msa1448990	0.803498	3.388338e-49	-8.615850e-47
Msa1087000	Msa1450420	0.832184	1.092560e-55	-8.615850e-47
Msa1087000	Msa1466170	0.807538	4.813886e-50	-8.615850e-47
Msa0256170	Msa1087000	0.830441	2.931466e-55	-8.615850e-47
Msa0268180	Msa1087000	0.828522	8.577563e-55	-8.615850e-47
Msa0268220	Msa1087000	0.899696	1.535206e-77	-8.615850e-47
Msa0268340	Msa1087000	0.900252	8.823476e-78	-8.615850e-47
Msa0268420	Msa1087000	0.827405	1.593427e-54	-8.615850e-47
Msa0268460	Msa1087000	0.944575	1.515589e-103	-8.615850e-47
Msa0268500	Msa1087000	0.901270	3.175679e-78	-8.615850e-47
Msa0268540	Msa1087000	0.805064	1.598831e-49	-8.615850e-47
Msa0268650	Msa1087000	0.822662	2.101049e-53	-8.615850e-47
Msa0268680	Msa1087000	0.961904	3.027406e-120	-8.615850e-47
Msa0268690	Msa1087000	0.888431	5.942806e-73	-8.615850e-47
Msa0268850	Msa1087000	0.823344	1.457209e-53	-8.615850e-47
Msa0268890	Msa1087000	0.833018	6.784862e-56	-8.615850e-47
Msa0268900	Msa1087000	0.934031	7.568440e-96	-8.615850e-47
Msa0268930	Msa1087000	0.806654	7.404924e-50	-8.615850e-47
Msa0269060	Msa1087000	0.820812	5.628043e-53	-8.615850e-47
Msa0269100	Msa1087000	0.947779	3.458432e-106	-8.615850e-47
Msa0286790	Msa1087000	0.812971	3.241432e-51	-8.615850e-47
Msa0306130	Msa1087000	0.840763	7.147510e-58	-8.615850e-47
Msa0309160	Msa1087000	0.847506	1.107402e-59	-8.615850e-47
Msa0330270	Msa1087000	0.828630	8.077848e-55	-8.615850e-47
Msa0331740	Msa1087000	0.813495	2.487086e-51	-8.615850e-47
Msa0336270	Msa1087000	0.824946	6.128546e-54	-8.615850e-47
Msa0338900	Msa1087000	0.820941	5.255518e-53	-8.615850e-47
Msa0344240	Msa1087000	0.888061	8.238800e-73	-8.615850e-47
Msa0344250	Msa1087000	0.869609	2.724136e-66	-8.615850e-47
Msa0505660	Msa1087000	0.821126	4.765940e-53	-8.615850e-47
Msa0509510	Msa1087000	0.801637	8.197417e-49	-8.615850e-47
Msa0515680	Msa1087000	0.806647	7.431151e-50	-8.615850e-47
Msa0528170	Msa1087000	0.800877	1.172534e-48	-8.615850e-47
Msa0558890	Msa1087000	0.807729	4.385039e-50	-8.615850e-47
Msa0568490	Msa1087000	0.811350	7.317573e-51	-8.615850e-47
Msa0582570	Msa1087000	0.888941	3.775969e-73	-8.615850e-47
Msa0582580	Msa1087000	0.911406	6.308677e-83	-8.615850e-47
Msa0582620	Msa1087000	0.806262	8.959220e-50	-8.615850e-47
Msa0582740	Msa1087000	0.815150	1.071339e-51	-8.615850e-47
Msa0591370	Msa1087000	0.824596	7.409949e-54	-8.615850e-47
Msa0860270	Msa1087000	0.846409	2.211563e-59	-8.615850e-47
Msa0887000	Msa1087000	0.805488	1.302884e-49	-8.615850e-47
Msa0924820	Msa1087000	0.890006	1.455065e-73	-8.615850e-47
Msa0924970	Msa1087000	0.889537	2.215885e-73	-8.615850e-47
Msa0925020	Msa1087000	0.890431	9.918848e-74	-8.615850e-47
Msa0930990	Msa1087000	0.885231	9.714176e-72	-8.615850e-47
Msa0931090	Msa1087000	0.801820	7.519371e-49	-8.615850e-47
Msa0931280	Msa1087000	0.815271	1.006973e-51	-8.615850e-47
Msa0978000	Msa1087000	0.802538	5.348852e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087000	MtrunA17_Chr4g0015801	81.301	123	10	3	73	182	1	123	3.22e-50	158
Msa1087000	MtrunA17_CPg0492771	81.301	123	10	3	73	182	1	123	3.22e-50	158
Msa1087000	MtrunA17_Chr6g0466591	88.889	90	6	1	73	158	1	90	2.30e-48	153
Msa1087000	MtrunA17_Chr4g0016891	86.957	92	8	2	73	160	1	92	2.54e-45	144
Msa1087000	MtrunA17_Chr7g0237831	94.667	75	2	1	73	145	1	75	4.69e-41	133
Msa1087000	MtrunA17_CPg0492781	98.361	61	1	0	1	61	1	61	6.23e-40	130
Msa1087000	MtrunA17_Chr4g0015791	98.361	61	1	0	1	61	1	61	6.23e-40	130
Msa1087000	MtrunA17_Chr8g0355601	96.721	61	2	0	1	61	1	61	3.20e-39	128
Msa1087000	MtrunA17_Chr6g0465781	96.610	59	2	0	73	131	1	59	2.39e-33	113
Msa1087000	MtrunA17_Chr7g0224991	88.095	42	5	0	19	60	2	43	9.70e-22	83.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087000	ATCG00650.1	70.909	110	23	2	73	182	1	101	1.66e-43	140
Msa1087000	ATCG00640.1	77.049	61	14	0	1	61	1	61	1.48e-31	109

Find 19 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATACGAATAACTGTTATTT+TGG	0.125276	7_2:+87661919	Msa1087000:CDS
AGAGTGTTAATAAGGAATCT+AGG	0.329597	7_2:+87661963	Msa1087000:CDS
AATCGTATGTTTGCAACAAA+AGG	0.396841	7_2:-87662059	None:intergenic
GAGTGTTAATAAGGAATCTA+GGG	0.452009	7_2:+87661964	Msa1087000:CDS
AGTTTGTCCCCGATCCAATC+GGG	0.455483	7_2:+87662359	Msa1087000:CDS
GAGTTTGTCCCCGATCCAAT+CGG	0.465376	7_2:+87662358	Msa1087000:CDS
TATTCGTATATCTTTACCCT+TGG	0.471315	7_2:-87661906	None:intergenic
CCAAAGGAGGTTCATGGCCA+AGG	0.512674	7_2:+87661889	None:intergenic
AAAGGTGACGAATTAACAAA+AGG	0.521079	7_2:-87662533	None:intergenic
ACACAATACACCTAGTCGAT+TGG	0.524208	7_2:+87662018	Msa1087000:CDS
ATCGTATGTTTGCAACAAAA+GGG	0.538893	7_2:-87662058	None:intergenic
TTTCTCAATTCCAATCGACT+AGG	0.574270	7_2:-87662028	None:intergenic
GAGTCGCTTAGATTTATCCA+TGG	0.585856	7_2:-87662306	None:intergenic
CAAAGGAGGTTCATGGCCAA+GGG	0.605158	7_2:+87661890	None:intergenic
GTATAGGAATAAACAAACCA+TGG	0.629025	7_2:+87662289	Msa1087000:CDS
TATCGACTTATTAGTCAACA+AGG	0.637963	7_2:+87662416	Msa1087000:CDS
GTTTGTCCCCGATCCAATCG+GGG	0.647747	7_2:+87662360	Msa1087000:CDS
TTTGTCCCCGATCCAATCGG+GGG	0.661952	7_2:+87662361	Msa1087000:CDS
AGTGTTAATAAGGAATCTAG+GGG	0.667965	7_2:+87661965	Msa1087000:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATCCTTTTTTTATAAGAAA+TGG	+	chr7_2:87662258-87662277	Msa1087000:intron	15.0%
!!!	ATCCTTTTTTTATAAGAAAT+GGG	+	chr7_2:87662259-87662278	Msa1087000:intron	15.0%
!!!	TTTTTTTCATTATTCACAAA+AGG	-	chr7_2:87662554-87662573	None:intergenic	15.0%
!!!	TATACGAATAACTGTTATTT+TGG	+	chr7_2:87661919-87661938	Msa1087000:CDS	20.0%
!!!	TGATAAAAAGAGTGTTAATA+AGG	+	chr7_2:87661955-87661974	Msa1087000:CDS	20.0%
!!	AGATAAAGAAATAGAGAAAA+TGG	+	chr7_2:87662089-87662108	Msa1087000:intron	20.0%
!!	ATCCCATTTCTTATAAAAAA+AGG	-	chr7_2:87662264-87662283	None:intergenic	20.0%
!!!	TTTATAAGAAATGGGATTTT+CGG	+	chr7_2:87662267-87662286	Msa1087000:intron	20.0%
!!!	AATTAATCGTTGTTGTTTTA+AGG	-	chr7_2:87662474-87662493	None:intergenic	20.0%
!!!	TTTTTTTTTAGAACAGTAGT+AGG	-	chr7_2:87662611-87662630	None:intergenic	20.0%
!	TTATAGAATTTACCTCCTAA+GGG	-	chr7_2:87662130-87662149	None:intergenic	25.0%
!	TTTATAGAATTTACCTCCTA+AGG	-	chr7_2:87662131-87662150	None:intergenic	25.0%
	TATTCGTATATCTTTACCCT+TGG	-	chr7_2:87661909-87661928	None:intergenic	30.0%
!	AGAGTGTTAATAAGGAATCT+AGG	+	chr7_2:87661963-87661982	Msa1087000:CDS	30.0%
	GAGTGTTAATAAGGAATCTA+GGG	+	chr7_2:87661964-87661983	Msa1087000:CDS	30.0%
	AGTGTTAATAAGGAATCTAG+GGG	+	chr7_2:87661965-87661984	Msa1087000:CDS	30.0%
	ATCGTATGTTTGCAACAAAA+GGG	-	chr7_2:87662061-87662080	None:intergenic	30.0%
	AATCGTATGTTTGCAACAAA+AGG	-	chr7_2:87662062-87662081	None:intergenic	30.0%
	GTATAGGAATAAACAAACCA+TGG	+	chr7_2:87662289-87662308	Msa1087000:CDS	30.0%
!	AATCTAAGCAATCTTTTCGT+AGG	+	chr7_2:87662336-87662355	Msa1087000:CDS	30.0%
!!	TATCGACTTATTAGTCAACA+AGG	+	chr7_2:87662416-87662435	Msa1087000:CDS	30.0%
	AAAGGTGACGAATTAACAAA+AGG	-	chr7_2:87662536-87662555	None:intergenic	30.0%
	TTTCTCAATTCCAATCGACT+AGG	-	chr7_2:87662031-87662050	None:intergenic	35.0%
!	AGAAATGGGATTTTCGGTAT+AGG	+	chr7_2:87662273-87662292	Msa1087000:intron	35.0%
	ACACAATACACCTAGTCGAT+TGG	+	chr7_2:87662018-87662037	Msa1087000:CDS	40.0%
	ATTGTTTGTGTGTCACCCTT+AGG	+	chr7_2:87662112-87662131	Msa1087000:intron	40.0%
	GAGTCGCTTAGATTTATCCA+TGG	-	chr7_2:87662309-87662328	None:intergenic	40.0%
	AATCAATTCGATCCCCCGAT+TGG	-	chr7_2:87662376-87662395	None:intergenic	45.0%
!!!	ATATTTATATTTGTTATATA+AGG	-	chr7_2:87662203-87662222	None:intergenic	5.0%
	GTTTGTGTGTCACCCTTAGG+AGG	+	chr7_2:87662115-87662134	Msa1087000:intron	50.0%
	GAGTTTGTCCCCGATCCAAT+CGG	+	chr7_2:87662358-87662377	Msa1087000:CDS	50.0%
	AGTTTGTCCCCGATCCAATC+GGG	+	chr7_2:87662359-87662378	Msa1087000:CDS	50.0%
	ATTCGATCCCCCGATTGGAT+CGG	-	chr7_2:87662371-87662390	None:intergenic	50.0%
	GTTTGTCCCCGATCCAATCG+GGG	+	chr7_2:87662360-87662379	Msa1087000:CDS	55.0%
	TTTGTCCCCGATCCAATCGG+GGG	+	chr7_2:87662361-87662380	Msa1087000:CDS	55.0%
	TTCGATCCCCCGATTGGATC+GGG	-	chr7_2:87662370-87662389	None:intergenic	55.0%
	TCGATCCCCCGATTGGATCG+GGG	-	chr7_2:87662369-87662388	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	87661902	87662640	87661902	ID=Msa1087000;Name=Msa1087000
chr7_2	mRNA	87661902	87662640	87661902	ID=Msa1087000-mRNA-1;Parent=Msa1087000;Name=Msa1087000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|1\|0\|0\|2\|0\|182
chr7_2	exon	87661902	87662084	87661902	ID=Msa1087000-mRNA-1:exon:23944;Parent=Msa1087000-mRNA-1
chr7_2	exon	87662275	87662640	87662275	ID=Msa1087000-mRNA-1:exon:23945;Parent=Msa1087000-mRNA-1
chr7_2	CDS	87661902	87662084	87661902	ID=Msa1087000-mRNA-1:cds;Parent=Msa1087000-mRNA-1
chr7_2	CDS	87662275	87662640	87662275	ID=Msa1087000-mRNA-1:cds;Parent=Msa1087000-mRNA-1

Gene Sequence

>Msa1087000

ATGGCCAAGGGTAAAGATATACGAATAACTGTTATTTTGGAATGTAGCAGTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGGTATTTCTAGATATATTACTCAAAAGAATCGACACAATACACCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTTTTGTTGCAAACATACGATTCACAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTACTTTATCGACTTATTAGTCAACAAGGAAAAATATTATCTAGACGCGTGAATAGATCAACCTTAAAACAACAACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTGTTAATTCGTCACCTTTTGTGAATAATGAAAAAAAAAAATATGAAAAAAGCGAGTCGATCACTAGAACTCCTACTACTGTTCTAAAAAAAAACAAAAAATAG

Protein sequence

>Msa1087000

MAKGKDIRITVILECSSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSGDRIDYKNMSLLYRLISQQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVNSSPFVNNEKKKYEKSESITRTPTTVLKKNKK*