Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268690 | AET02655.1 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 2.91e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268690 | sp|B5LMP5|RK33_CICAR | 96.667 | 60 | 2 | 0 | 46 | 105 | 7 | 66 | 2.77e-37 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268690 | G7L7R4 | 89.691 | 97 | 3 | 1 | 15 | 104 | 1 | 97 | 1.39e-54 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039200 | Msa0268690 | 0.829505 | 4.957074e-55 | -8.615850e-47 |
| Msa0040190 | Msa0268690 | 0.837524 | 4.941357e-57 | -8.615850e-47 |
| Msa0086820 | Msa0268690 | 0.825056 | 5.771102e-54 | -8.615850e-47 |
| Msa0087880 | Msa0268690 | 0.836458 | 9.248203e-57 | -8.615850e-47 |
| Msa0095140 | Msa0268690 | 0.893904 | 4.068995e-75 | -8.615850e-47 |
| Msa0095240 | Msa0268690 | 0.879340 | 1.349276e-69 | -8.615850e-47 |
| Msa0095270 | Msa0268690 | 0.883894 | 3.048187e-71 | -8.615850e-47 |
| Msa0133670 | Msa0268690 | 0.830463 | 2.896383e-55 | -8.615850e-47 |
| Msa0133880 | Msa0268690 | 0.834150 | 3.539004e-56 | -8.615850e-47 |
| Msa0134550 | Msa0268690 | 0.846061 | 2.752181e-59 | -8.615850e-47 |
| Msa0141670 | Msa0268690 | 0.807488 | 4.933136e-50 | -8.615850e-47 |
| Msa0184120 | Msa0268690 | 0.835576 | 1.548122e-56 | -8.615850e-47 |
| Msa0189050 | Msa0268690 | 0.801783 | 7.651517e-49 | -8.615850e-47 |
| Msa0221860 | Msa0268690 | 0.871747 | 5.399238e-67 | -8.615850e-47 |
| Msa0231310 | Msa0268690 | 0.803153 | 3.993556e-49 | -8.615850e-47 |
| Msa0256170 | Msa0268690 | 0.800624 | 1.320698e-48 | -8.615850e-47 |
| Msa0268180 | Msa0268690 | 0.861459 | 1.011199e-63 | -8.615850e-47 |
| Msa0268220 | Msa0268690 | 0.885938 | 5.278492e-72 | -8.615850e-47 |
| Msa0268340 | Msa0268690 | 0.896422 | 3.744811e-76 | -8.615850e-47 |
| Msa0268380 | Msa0268690 | 0.812155 | 4.888165e-51 | -8.615850e-47 |
| Msa0268420 | Msa0268690 | 0.840121 | 1.051934e-57 | -8.615850e-47 |
| Msa0268460 | Msa0268690 | 0.900793 | 5.132046e-78 | -8.615850e-47 |
| Msa0268500 | Msa0268690 | 0.903725 | 2.577572e-79 | -8.615850e-47 |
| Msa0268540 | Msa0268690 | 0.824465 | 7.956238e-54 | -8.615850e-47 |
| Msa0268650 | Msa0268690 | 0.849203 | 3.758390e-60 | -8.615850e-47 |
| Msa0268680 | Msa0268690 | 0.887736 | 1.097774e-72 | -8.615850e-47 |
| Msa0268690 | Msa0268730 | 0.819450 | 1.154069e-52 | -8.615850e-47 |
| Msa0268690 | Msa0268850 | 0.828994 | 6.595211e-55 | -8.615850e-47 |
| Msa0268690 | Msa0268890 | 0.840489 | 8.432011e-58 | -8.615850e-47 |
| Msa0268690 | Msa0268900 | 0.926076 | 7.702450e-91 | -8.615850e-47 |
| Msa0268690 | Msa0268930 | 0.823275 | 1.512047e-53 | -8.615850e-47 |
| Msa0268690 | Msa0269060 | 0.843876 | 1.070188e-58 | -8.615850e-47 |
| Msa0268690 | Msa0269100 | 0.901434 | 2.691373e-78 | -8.615850e-47 |
| Msa0268690 | Msa0306130 | 0.833344 | 5.629219e-56 | -8.615850e-47 |
| Msa0268690 | Msa0309160 | 0.801549 | 8.544857e-49 | -8.615850e-47 |
| Msa0268690 | Msa0344200 | 0.835428 | 1.688239e-56 | -8.615850e-47 |
| Msa0268690 | Msa0344240 | 0.881836 | 1.723534e-70 | -8.615850e-47 |
| Msa0268690 | Msa0344250 | 0.858388 | 8.525962e-63 | -8.615850e-47 |
| Msa0268690 | Msa0427050 | 0.800083 | 1.701840e-48 | -8.615850e-47 |
| Msa0268690 | Msa0449900 | 0.839324 | 1.696533e-57 | -8.615850e-47 |
| Msa0268690 | Msa0473450 | 0.808608 | 2.848698e-50 | -8.615850e-47 |
| Msa0268690 | Msa0475830 | 0.840895 | 6.599036e-58 | -8.615850e-47 |
| Msa0268690 | Msa0530210 | 0.801073 | 1.069318e-48 | -8.615850e-47 |
| Msa0268690 | Msa0582530 | 0.804334 | 2.270445e-49 | -8.615850e-47 |
| Msa0268690 | Msa0582570 | 0.892890 | 1.045231e-74 | -8.615850e-47 |
| Msa0268690 | Msa0582580 | 0.872778 | 2.447390e-67 | -8.615850e-47 |
| Msa0268690 | Msa0582620 | 0.851459 | 8.752011e-61 | -8.615850e-47 |
| Msa0268690 | Msa0582710 | 0.814736 | 1.323416e-51 | -8.615850e-47 |
| Msa0268690 | Msa0582740 | 0.852058 | 5.921678e-61 | -8.615850e-47 |
| Msa0268690 | Msa0582830 | 0.800792 | 1.220350e-48 | -8.615850e-47 |
| Msa0268690 | Msa0582900 | 0.815464 | 9.123527e-52 | -8.615850e-47 |
| Msa0268690 | Msa0635990 | 0.809865 | 1.532140e-50 | -8.615850e-47 |
| Msa0268690 | Msa0668630 | 0.839298 | 1.722455e-57 | -8.615850e-47 |
| Msa0268690 | Msa0727020 | 0.830268 | 3.230854e-55 | -8.615850e-47 |
| Msa0268690 | Msa0739570 | 0.820596 | 6.308774e-53 | -8.615850e-47 |
| Msa0268690 | Msa0766880 | 0.806554 | 7.774896e-50 | -8.615850e-47 |
| Msa0268690 | Msa0772210 | 0.833358 | 5.585038e-56 | -8.615850e-47 |
| Msa0268690 | Msa0782330 | 0.817714 | 2.857093e-52 | -8.615850e-47 |
| Msa0268690 | Msa0860270 | 0.834605 | 2.720580e-56 | -8.615850e-47 |
| Msa0268690 | Msa0924820 | 0.854136 | 1.504387e-61 | -8.615850e-47 |
| Msa0268690 | Msa0924970 | 0.838967 | 2.099096e-57 | -8.615850e-47 |
| Msa0268690 | Msa0925020 | 0.870714 | 1.183998e-66 | -8.615850e-47 |
| Msa0268690 | Msa0930990 | 0.823903 | 1.077909e-53 | -8.615850e-47 |
| Msa0268690 | Msa0931090 | 0.827528 | 1.488521e-54 | -8.615850e-47 |
| Msa0268690 | Msa0931150 | 0.801863 | 7.366649e-49 | -8.615850e-47 |
| Msa0268690 | Msa0931280 | 0.832988 | 6.903892e-56 | -8.615850e-47 |
| Msa0268690 | Msa0983670 | 0.857543 | 1.519729e-62 | -8.615850e-47 |
| Msa0268690 | Msa1049440 | 0.813265 | 2.794074e-51 | -8.615850e-47 |
| Msa0268690 | Msa1079610 | 0.822153 | 2.759174e-53 | -8.615850e-47 |
| Msa0268690 | Msa1086020 | 0.908048 | 2.614512e-81 | -8.615850e-47 |
| Msa0268690 | Msa1086060 | 0.836498 | 9.036620e-57 | -8.615850e-47 |
| Msa0268690 | Msa1086160 | 0.844123 | 9.186630e-59 | -8.615850e-47 |
| Msa0268690 | Msa1086170 | 0.810718 | 1.002532e-50 | -8.615850e-47 |
| Msa0268690 | Msa1086260 | 0.814951 | 1.186126e-51 | -8.615850e-47 |
| Msa0268690 | Msa1086290 | 0.819065 | 1.411962e-52 | -8.615850e-47 |
| Msa0268690 | Msa1086330 | 0.892270 | 1.853114e-74 | -8.615850e-47 |
| Msa0268690 | Msa1086340 | 0.917078 | 8.225329e-86 | -8.615850e-47 |
| Msa0268690 | Msa1086370 | 0.831531 | 1.583867e-55 | -8.615850e-47 |
| Msa0268690 | Msa1086410 | 0.880544 | 5.031835e-70 | -8.615850e-47 |
| Msa0268690 | Msa1086440 | 0.811447 | 6.970471e-51 | -8.615850e-47 |
| Msa0268690 | Msa1086520 | 0.901186 | 3.455940e-78 | -8.615850e-47 |
| Msa0268690 | Msa1086630 | 0.897157 | 1.844869e-76 | -8.615850e-47 |
| Msa0268690 | Msa1086690 | 0.901719 | 2.015087e-78 | -8.615850e-47 |
| Msa0268690 | Msa1086830 | 0.891237 | 4.772120e-74 | -8.615850e-47 |
| Msa0268690 | Msa1086870 | 0.810555 | 1.087757e-50 | -8.615850e-47 |
| Msa0268690 | Msa1087000 | 0.888431 | 5.942806e-73 | -8.615850e-47 |
| Msa0268690 | Msa1120540 | 0.803109 | 4.077554e-49 | -8.615850e-47 |
| Msa0268690 | Msa1123340 | 0.816596 | 5.097453e-52 | -8.615850e-47 |
| Msa0268690 | Msa1124440 | 0.824909 | 6.252957e-54 | -8.615850e-47 |
| Msa0268690 | Msa1143140 | 0.815073 | 1.114502e-51 | -8.615850e-47 |
| Msa0268690 | Msa1157160 | 0.820509 | 6.606538e-53 | -8.615850e-47 |
| Msa0268690 | Msa1168130 | 0.817387 | 3.385466e-52 | -8.615850e-47 |
| Msa0268690 | Msa1211880 | 0.803581 | 3.255348e-49 | -8.615850e-47 |
| Msa0268690 | Msa1354850 | 0.892510 | 1.485899e-74 | -8.615850e-47 |
| Msa0268690 | Msa1354890 | 0.826553 | 2.547220e-54 | -8.615850e-47 |
| Msa0268690 | Msa1355020 | 0.881924 | 1.602002e-70 | -8.615850e-47 |
| Msa0268690 | Msa1355060 | 0.824231 | 9.029042e-54 | -8.615850e-47 |
| Msa0268690 | Msa1355260 | 0.803857 | 2.852938e-49 | -8.615850e-47 |
| Msa0268690 | Msa1371250 | 0.801076 | 1.067716e-48 | -8.615850e-47 |
| Msa0268690 | Msa1380540 | 0.878632 | 2.399249e-69 | -8.615850e-47 |
| Msa0268690 | Msa1385450 | 0.855805 | 4.928528e-62 | -8.615850e-47 |
| Msa0268690 | Msa1385940 | 0.806674 | 7.334020e-50 | -8.615850e-47 |
| Msa0268690 | Msa1387090 | 0.814669 | 1.369234e-51 | -8.615850e-47 |
| Msa0268690 | Msa1390410 | 0.802587 | 5.226553e-49 | -8.615850e-47 |
| Msa0268690 | Msa1394090 | 0.888354 | 6.359128e-73 | -8.615850e-47 |
| Msa0268690 | Msa1394100 | 0.887822 | 1.017545e-72 | -8.615850e-47 |
| Msa0268690 | Msa1394170 | 0.800867 | 1.178357e-48 | -8.615850e-47 |
| Msa0268690 | Msa1394280 | 0.898804 | 3.704297e-77 | -8.615850e-47 |
| Msa0268690 | Msa1400600 | 0.801318 | 9.527613e-49 | -8.615850e-47 |
| Msa0268690 | Msa1415120 | 0.824605 | 7.374010e-54 | -8.615850e-47 |
| Msa0268690 | Msa1422750 | 0.801938 | 7.108013e-49 | -8.615850e-47 |
| Msa0268690 | Msa1428440 | 0.805026 | 1.628430e-49 | -8.615850e-47 |
| Msa0268690 | Msa1439160 | 0.807803 | 4.228114e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268690 | MtrunA17_CPg0492781 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.14e-38 | 124 |
| Msa0268690 | MtrunA17_Chr4g0015791 | 98.333 | 60 | 1 | 0 | 46 | 105 | 7 | 66 | 1.14e-38 | 124 |
| Msa0268690 | MtrunA17_Chr8g0355601 | 96.610 | 59 | 2 | 0 | 46 | 104 | 7 | 65 | 1.73e-37 | 120 |
| Msa0268690 | MtrunA17_Chr7g0224991 | 95.455 | 44 | 2 | 0 | 62 | 105 | 6 | 49 | 7.95e-26 | 90.9 |
| Msa0268690 | MtrunA17_CPg0492791 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.06e-15 | 64.3 |
| Msa0268690 | MtrunA17_Chr4g0015781 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.06e-15 | 64.3 |
| Msa0268690 | MtrunA17_Chr4g0028951 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.06e-15 | 64.3 |
| Msa0268690 | MtrunA17_Chr8g0355611 | 93.750 | 32 | 2 | 0 | 15 | 46 | 1 | 32 | 2.06e-15 | 64.3 |
| Msa0268690 | MtrunA17_Chr4g0016881 | 96.774 | 31 | 1 | 0 | 15 | 45 | 1 | 31 | 5.83e-15 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268690 | ATCG00640.1 | 75.000 | 60 | 15 | 0 | 46 | 105 | 7 | 66 | 2.13e-29 | 100 |
| Msa0268690 | ATCG00630.1 | 84.375 | 32 | 5 | 0 | 15 | 46 | 1 | 32 | 8.57e-13 | 58.2 |
Find 13 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACGAATAACTGTTATTT+TGG | 0.125276 | 2_2:-70368912 | Msa0268690:CDS |
| AGAGTGTTAATAAGGAATCT+AGG | 0.329597 | 2_2:-70368868 | Msa0268690:CDS |
| AATCGTATGTTTGCAACAAA+AGG | 0.396841 | 2_2:+70368772 | None:intergenic |
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 2_2:-70369534 | Msa0268690:CDS |
| GAGTGTTAATAAGGAATCTA+GGG | 0.452009 | 2_2:-70368867 | Msa0268690:CDS |
| CTATGGTTCGCGGTTCTAGC+AGG | 0.487956 | 2_2:-70369517 | Msa0268690:CDS |
| ACACAATACACCTAGTCGAT+TGG | 0.524208 | 2_2:-70368813 | Msa0268690:CDS |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 2_2:-70369527 | Msa0268690:CDS |
| ATCGTATGTTTGCAACAAAA+GGG | 0.538893 | 2_2:+70368773 | None:intergenic |
| TTTCTCAATTCCAATCGACT+AGG | 0.574270 | 2_2:+70368803 | None:intergenic |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 2_2:-70369548 | Msa0268690:CDS |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 2_2:+70369532 | None:intergenic |
| AGTGTTAATAAGGAATCTAG+GGG | 0.667965 | 2_2:-70368866 | Msa0268690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr2_2:70368912-70368931 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr2_2:70369035-70369054 | Msa0268690:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr2_2:70369129-70369148 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | - | chr2_2:70369285-70369304 | Msa0268690:intron | 15.0% |
| !! | AATAACTAGAATCAAAAAAA+GGG | + | chr2_2:70368912-70368931 | None:intergenic | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | - | chr2_2:70369035-70369054 | Msa0268690:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | + | chr2_2:70369129-70369148 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | - | chr2_2:70369285-70369304 | Msa0268690:intron | 15.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | + | chr2_2:70368761-70368780 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr2_2:70368760-70368779 | Msa0268690:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr2_2:70368911-70368930 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr2_2:70368913-70368932 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr2_2:70368911-70368930 | Msa0268690:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr2_2:70368966-70368985 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr2_2:70369038-70369057 | Msa0268690:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr2_2:70369044-70369063 | Msa0268690:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr2_2:70369160-70369179 | None:intergenic | 20.0% |
| !! | AAGTGAATCAAAAAAAACAA+AGG | - | chr2_2:70369400-70369419 | Msa0268690:intron | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr2_2:70369446-70369465 | Msa0268690:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr2_2:70369482-70369501 | Msa0268690:intron | 20.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | + | chr2_2:70368761-70368780 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | - | chr2_2:70368760-70368779 | Msa0268690:CDS | 20.0% |
| !! | ATAACTAGAATCAAAAAAAG+GGG | + | chr2_2:70368911-70368930 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+AGG | + | chr2_2:70368913-70368932 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGATTCTAGTTAT+TGG | - | chr2_2:70368911-70368930 | Msa0268690:CDS | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | + | chr2_2:70368966-70368985 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | - | chr2_2:70369038-70369057 | Msa0268690:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | - | chr2_2:70369044-70369063 | Msa0268690:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | + | chr2_2:70369160-70369179 | None:intergenic | 20.0% |
| !! | AAGTGAATCAAAAAAAACAA+AGG | - | chr2_2:70369400-70369419 | Msa0268690:intron | 20.0% |
| !!! | TATACGAATAACTGTTATTT+TGG | - | chr2_2:70369446-70369465 | Msa0268690:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | - | chr2_2:70369482-70369501 | Msa0268690:intron | 20.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr2_2:70368983-70369002 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr2_2:70368984-70369003 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr2_2:70369164-70369183 | Msa0268690:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr2_2:70369165-70369184 | Msa0268690:intron | 25.0% |
| ! | TGAATCAAAAAAAACAAAGG+AGG | - | chr2_2:70369403-70369422 | Msa0268690:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | + | chr2_2:70368983-70369002 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | + | chr2_2:70368984-70369003 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | - | chr2_2:70369164-70369183 | Msa0268690:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | - | chr2_2:70369165-70369184 | Msa0268690:intron | 25.0% |
| ! | TGAATCAAAAAAAACAAAGG+AGG | - | chr2_2:70369403-70369422 | Msa0268690:intron | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr2_2:70368763-70368782 | Msa0268690:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr2_2:70368801-70368820 | Msa0268690:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr2_2:70368916-70368935 | Msa0268690:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr2_2:70369070-70369089 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr2_2:70369144-70369163 | Msa0268690:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | - | chr2_2:70369168-70369187 | Msa0268690:intron | 30.0% | |
| AAAAAAACAAAGGAGGTTCA+TGG | - | chr2_2:70369410-70369429 | Msa0268690:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr2_2:70369436-70369455 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr2_2:70369490-70369509 | Msa0268690:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr2_2:70369491-70369510 | Msa0268690:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr2_2:70369492-70369511 | Msa0268690:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr2_2:70369588-70369607 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr2_2:70369589-70369608 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAACGAAGG+AGG | - | chr2_2:70368763-70368782 | Msa0268690:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | - | chr2_2:70368801-70368820 | Msa0268690:CDS | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | - | chr2_2:70368916-70368935 | Msa0268690:CDS | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | + | chr2_2:70369070-70369089 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | - | chr2_2:70369144-70369163 | Msa0268690:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | - | chr2_2:70369168-70369187 | Msa0268690:intron | 30.0% | |
| AAAAAAACAAAGGAGGTTCA+TGG | - | chr2_2:70369410-70369429 | Msa0268690:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | + | chr2_2:70369436-70369455 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | - | chr2_2:70369490-70369509 | Msa0268690:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | - | chr2_2:70369491-70369510 | Msa0268690:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | - | chr2_2:70369492-70369511 | Msa0268690:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | + | chr2_2:70369588-70369607 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | + | chr2_2:70369589-70369608 | None:intergenic | 30.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr2_2:70369073-70369092 | Msa0268690:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr2_2:70369093-70369112 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr2_2:70369094-70369113 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | - | chr2_2:70369169-70369188 | Msa0268690:intron | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr2_2:70369364-70369383 | None:intergenic | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr2_2:70369558-70369577 | None:intergenic | 35.0% | |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | - | chr2_2:70369073-70369092 | Msa0268690:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | + | chr2_2:70369093-70369112 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | + | chr2_2:70369094-70369113 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | - | chr2_2:70369169-70369188 | Msa0268690:intron | 35.0% | |
| TTCGAAGCGAAGAAGAAAAA+AGG | + | chr2_2:70369364-70369383 | None:intergenic | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | + | chr2_2:70369558-70369577 | None:intergenic | 35.0% | |
| AAAGGGGAATGTCAATGCAT+CGG | + | chr2_2:70368895-70368914 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr2_2:70369060-70369079 | Msa0268690:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr2_2:70369082-70369101 | Msa0268690:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr2_2:70369545-70369564 | Msa0268690:CDS | 40.0% | |
| AAAGGGGAATGTCAATGCAT+CGG | + | chr2_2:70368895-70368914 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | - | chr2_2:70369060-70369079 | Msa0268690:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | - | chr2_2:70369082-70369101 | Msa0268690:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | - | chr2_2:70369545-70369564 | Msa0268690:CDS | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr2_2:70368829-70368848 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+GGG | + | chr2_2:70368894-70368913 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr2_2:70368921-70368940 | Msa0268690:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr2_2:70368922-70368941 | Msa0268690:intron | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | + | chr2_2:70368829-70368848 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+GGG | + | chr2_2:70368894-70368913 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | - | chr2_2:70368921-70368940 | Msa0268690:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | - | chr2_2:70368922-70368941 | Msa0268690:intron | 45.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr2_2:70368810-70368829 | Msa0268690:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr2_2:70368824-70368843 | Msa0268690:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr2_2:70368831-70368850 | Msa0268690:CDS | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr2_2:70368923-70368942 | Msa0268690:intron | 50.0% | |
| ACAAAGGAGGTTCATGGCCA+AGG | - | chr2_2:70369416-70369435 | Msa0268690:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr2_2:70369417-70369436 | Msa0268690:intron | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | - | chr2_2:70368810-70368829 | Msa0268690:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | - | chr2_2:70368824-70368843 | Msa0268690:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | - | chr2_2:70368831-70368850 | Msa0268690:CDS | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | - | chr2_2:70368923-70368942 | Msa0268690:intron | 50.0% | |
| ACAAAGGAGGTTCATGGCCA+AGG | - | chr2_2:70369416-70369435 | Msa0268690:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | - | chr2_2:70369417-70369436 | Msa0268690:intron | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr2_2:70368841-70368860 | Msa0268690:CDS | 55.0% |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | - | chr2_2:70368841-70368860 | Msa0268690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70368751 | 70369629 | 70368751 | ID=Msa0268690;Name=Msa0268690 |
| chr2_2 | mRNA | 70368751 | 70369629 | 70368751 | ID=Msa0268690-mRNA-1;Parent=Msa0268690;Name=Msa0268690-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|105 |
| chr2_2 | exon | 70369497 | 70369629 | 70369497 | ID=Msa0268690-mRNA-1:exon:22599;Parent=Msa0268690-mRNA-1 |
| chr2_2 | exon | 70368751 | 70368935 | 70368751 | ID=Msa0268690-mRNA-1:exon:22598;Parent=Msa0268690-mRNA-1 |
| chr2_2 | CDS | 70369497 | 70369629 | 70369497 | ID=Msa0268690-mRNA-1:cds;Parent=Msa0268690-mRNA-1 |
| chr2_2 | CDS | 70368751 | 70368935 | 70368751 | ID=Msa0268690-mRNA-1:cds;Parent=Msa0268690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
