AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268500 MtrunA17_Chr4g0015801 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa0268500 MtrunA17_CPg0492771 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa0268500 MtrunA17_Chr6g0466591 88.889 90 6 1 68 153 1 90 1.93e-48 153
Msa0268500 MtrunA17_Chr4g0016891 86.957 92 8 2 68 155 1 92 4.39e-45 144
Msa0268500 MtrunA17_Chr7g0237831 94.667 75 2 1 68 140 1 75 5.92e-41 132
Msa0268500 MtrunA17_Chr6g0465781 96.610 59 2 0 68 126 1 59 1.31e-33 113
Msa0268500 MtrunA17_CPg0492791 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0268500 MtrunA17_Chr4g0015781 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0268500 MtrunA17_Chr4g0028951 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0268500 MtrunA17_Chr8g0355611 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0268500 MtrunA17_Chr4g0016881 100.000 30 0 0 15 44 1 30 5.50e-14 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268500 ATCG00650.1 70.909 110 23 2 68 177 1 101 8.00e-44 141
Msa0268500 ATCG00630.1 90.000 30 3 0 15 44 1 30 1.53e-11 57.0

Find 16 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTGTTAATAAGGAATCT+AGG 0.329597 2_2:-70288746 Msa0268500:CDS
CACCAGTGGCAAGTACTCTA+TGG 0.426592 2_2:-70289417 Msa0268500:CDS
GAGTGTTAATAAGGAATCTA+GGG 0.452009 2_2:-70288745 Msa0268500:CDS
AGTTTGTCCCCGATCCAATC+GGG 0.455483 2_2:-70288350 Msa0268500:CDS
GAGTTTGTCCCCGATCCAAT+CGG 0.465376 2_2:-70288351 Msa0268500:CDS
CTATGGTTCGCGGTTCTAGC+AGG 0.487956 2_2:-70289400 Msa0268500:CDS
AAAGGTGACGAATTAACAAA+AGG 0.521079 2_2:+70288176 None:intergenic
GGCAAGTACTCTATGGTTCG+CGG 0.527936 2_2:-70289410 Msa0268500:CDS
ATATCTCTCTGTGGCACCAG+TGG 0.585814 2_2:-70289431 Msa0268500:CDS
GAGTCGCTTAGATTTATCCA+TGG 0.585856 2_2:+70288403 None:intergenic
AACCATAGAGTACTTGCCAC+TGG 0.586013 2_2:+70289415 None:intergenic
GTATAGGAATAAACAAACCA+TGG 0.629025 2_2:-70288420 Msa0268500:CDS
TATCGACTTATTAGTCAACA+AGG 0.637963 2_2:-70288293 Msa0268500:CDS
GTTTGTCCCCGATCCAATCG+GGG 0.647747 2_2:-70288349 Msa0268500:CDS
TTTGTCCCCGATCCAATCGG+GGG 0.661952 2_2:-70288348 Msa0268500:CDS
AGTGTTAATAAGGAATCTAG+GGG 0.667965 2_2:-70288744 Msa0268500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTAGAATCAAAAAAA+GGG + chr2_2:70288253-70288272 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG - chr2_2:70288377-70288396 Msa0268500:CDS 15.0%
!! TATTATTAAATTCATAGCAA+TGG + chr2_2:70288471-70288490 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG - chr2_2:70288627-70288646 Msa0268500:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG - chr2_2:70289130-70289149 Msa0268500:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG - chr2_2:70289131-70289150 Msa0268500:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG + chr2_2:70289426-70289445 None:intergenic 15.0%
!! AATAACTAGAATCAAAAAAA+GGG + chr2_2:70288253-70288272 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG - chr2_2:70288377-70288396 Msa0268500:CDS 15.0%
!! TATTATTAAATTCATAGCAA+TGG + chr2_2:70288471-70288490 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG - chr2_2:70288627-70288646 Msa0268500:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG - chr2_2:70289130-70289149 Msa0268500:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG - chr2_2:70289131-70289150 Msa0268500:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG + chr2_2:70289426-70289445 None:intergenic 15.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG + chr2_2:70288101-70288120 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG - chr2_2:70288100-70288119 Msa0268500:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG + chr2_2:70288252-70288271 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG + chr2_2:70288254-70288273 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG - chr2_2:70288252-70288271 Msa0268500:CDS 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG + chr2_2:70288307-70288326 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG - chr2_2:70288380-70288399 Msa0268500:CDS 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG - chr2_2:70288386-70288405 Msa0268500:CDS 20.0%
!! TTCTATTACAATTCCATTTA+TGG + chr2_2:70288502-70288521 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG - chr2_2:70288791-70288810 Msa0268500:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG - chr2_2:70288827-70288846 Msa0268500:intron 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG - chr2_2:70288961-70288980 Msa0268500:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG + chr2_2:70289136-70289155 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG - chr2_2:70289139-70289158 Msa0268500:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG + chr2_2:70289346-70289365 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG + chr2_2:70289483-70289502 None:intergenic 20.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG + chr2_2:70288101-70288120 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG - chr2_2:70288100-70288119 Msa0268500:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG + chr2_2:70288252-70288271 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG + chr2_2:70288254-70288273 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG - chr2_2:70288252-70288271 Msa0268500:CDS 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG + chr2_2:70288307-70288326 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG - chr2_2:70288380-70288399 Msa0268500:CDS 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG - chr2_2:70288386-70288405 Msa0268500:CDS 20.0%
!! TTCTATTACAATTCCATTTA+TGG + chr2_2:70288502-70288521 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG - chr2_2:70288791-70288810 Msa0268500:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG - chr2_2:70288827-70288846 Msa0268500:intron 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG - chr2_2:70288961-70288980 Msa0268500:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG + chr2_2:70289136-70289155 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG - chr2_2:70289139-70289158 Msa0268500:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG + chr2_2:70289346-70289365 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG + chr2_2:70289483-70289502 None:intergenic 20.0%
! AAAAAAAAAACGAACGAAGA+GGG + chr2_2:70288324-70288343 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG + chr2_2:70288325-70288344 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG - chr2_2:70288506-70288525 Msa0268500:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG - chr2_2:70288507-70288526 Msa0268500:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG - chr2_2:70288745-70288764 Msa0268500:CDS 25.0%
! TTATAGAATTTACCTCCTAA+GGG + chr2_2:70289002-70289021 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG + chr2_2:70289003-70289022 None:intergenic 25.0%
! AAAAAAAAAACGAACGAAGA+GGG + chr2_2:70288324-70288343 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG + chr2_2:70288325-70288344 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG - chr2_2:70288506-70288525 Msa0268500:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG - chr2_2:70288507-70288526 Msa0268500:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG - chr2_2:70288745-70288764 Msa0268500:CDS 25.0%
! TTATAGAATTTACCTCCTAA+GGG + chr2_2:70289002-70289021 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG + chr2_2:70289003-70289022 None:intergenic 25.0%
TTACAAGAAAAAAACGAAGG+AGG - chr2_2:70288103-70288122 Msa0268500:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG - chr2_2:70288141-70288160 Msa0268500:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG - chr2_2:70288213-70288232 Msa0268500:CDS 30.0%
! TTTGATTCTAGTTATTGGCA+CGG - chr2_2:70288257-70288276 Msa0268500:CDS 30.0%
AAAAACTCCTAATTTCACTG+AGG + chr2_2:70288412-70288431 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG - chr2_2:70288486-70288505 Msa0268500:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG - chr2_2:70288510-70288529 Msa0268500:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG - chr2_2:70288748-70288767 Msa0268500:CDS 30.0%
TATTCGTATATCTTTACCCT+TGG + chr2_2:70288781-70288800 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG - chr2_2:70288835-70288854 Msa0268500:intron 30.0%
GAGTGTTAATAAGGAATCTA+GGG - chr2_2:70288836-70288855 Msa0268500:intron 30.0%
AGTGTTAATAAGGAATCTAG+GGG - chr2_2:70288837-70288856 Msa0268500:intron 30.0%
ATCGTATGTTTGCAACAAAA+GGG + chr2_2:70288933-70288952 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG + chr2_2:70288934-70288953 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG - chr2_2:70289161-70289180 Msa0268500:intron 30.0%
! AATCTAAGCAATCTTTTCGT+AGG - chr2_2:70289208-70289227 Msa0268500:intron 30.0%
!! TATCGACTTATTAGTCAACA+AGG - chr2_2:70289288-70289307 Msa0268500:intron 30.0%
AAAGGTGACGAATTAACAAA+AGG + chr2_2:70289408-70289427 None:intergenic 30.0%
TTACAAGAAAAAAACGAAGG+AGG - chr2_2:70288103-70288122 Msa0268500:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG - chr2_2:70288141-70288160 Msa0268500:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG - chr2_2:70288213-70288232 Msa0268500:CDS 30.0%
! TTTGATTCTAGTTATTGGCA+CGG - chr2_2:70288257-70288276 Msa0268500:CDS 30.0%
AAAAACTCCTAATTTCACTG+AGG + chr2_2:70288412-70288431 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG - chr2_2:70288486-70288505 Msa0268500:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG - chr2_2:70288510-70288529 Msa0268500:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG - chr2_2:70288748-70288767 Msa0268500:CDS 30.0%
TATTCGTATATCTTTACCCT+TGG + chr2_2:70288781-70288800 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG - chr2_2:70288835-70288854 Msa0268500:intron 30.0%
GAGTGTTAATAAGGAATCTA+GGG - chr2_2:70288836-70288855 Msa0268500:intron 30.0%
AGTGTTAATAAGGAATCTAG+GGG - chr2_2:70288837-70288856 Msa0268500:intron 30.0%
ATCGTATGTTTGCAACAAAA+GGG + chr2_2:70288933-70288952 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG + chr2_2:70288934-70288953 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG - chr2_2:70289161-70289180 Msa0268500:intron 30.0%
! AATCTAAGCAATCTTTTCGT+AGG - chr2_2:70289208-70289227 Msa0268500:intron 30.0%
!! TATCGACTTATTAGTCAACA+AGG - chr2_2:70289288-70289307 Msa0268500:intron 30.0%
AAAGGTGACGAATTAACAAA+AGG + chr2_2:70289408-70289427 None:intergenic 30.0%
! TGAAATTAGGAGTTTTTCCC+AGG - chr2_2:70288415-70288434 Msa0268500:CDS 35.0%
CTTCAATTCCATTGAAACCT+GGG + chr2_2:70288435-70288454 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG + chr2_2:70288436-70288455 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG - chr2_2:70288511-70288530 Msa0268500:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG + chr2_2:70288706-70288725 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG - chr2_2:70288755-70288774 Msa0268500:CDS 35.0%
TTTCTCAATTCCAATCGACT+AGG + chr2_2:70288903-70288922 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG - chr2_2:70289145-70289164 Msa0268500:intron 35.0%
! TGAAATTAGGAGTTTTTCCC+AGG - chr2_2:70288415-70288434 Msa0268500:CDS 35.0%
CTTCAATTCCATTGAAACCT+GGG + chr2_2:70288435-70288454 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG + chr2_2:70288436-70288455 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG - chr2_2:70288511-70288530 Msa0268500:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG + chr2_2:70288706-70288725 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG - chr2_2:70288755-70288774 Msa0268500:CDS 35.0%
TTTCTCAATTCCAATCGACT+AGG + chr2_2:70288903-70288922 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG - chr2_2:70289145-70289164 Msa0268500:intron 35.0%
GATTTGGCCTCAGTGAAATT+AGG - chr2_2:70288402-70288421 Msa0268500:CDS 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG - chr2_2:70288424-70288443 Msa0268500:CDS 40.0%
ACACAATACACCTAGTCGAT+TGG - chr2_2:70288890-70288909 Msa0268500:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG - chr2_2:70288984-70289003 Msa0268500:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG + chr2_2:70289181-70289200 None:intergenic 40.0%
GATTTGGCCTCAGTGAAATT+AGG - chr2_2:70288402-70288421 Msa0268500:CDS 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG - chr2_2:70288424-70288443 Msa0268500:CDS 40.0%
ACACAATACACCTAGTCGAT+TGG - chr2_2:70288890-70288909 Msa0268500:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG - chr2_2:70288984-70289003 Msa0268500:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG + chr2_2:70289181-70289200 None:intergenic 40.0%
! AACCATAGAGTACTTGCCAC+TGG + chr2_2:70288169-70288188 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG + chr2_2:70288235-70288254 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG - chr2_2:70288262-70288281 Msa0268500:CDS 45.0%
TCTAGTTATTGGCACGGCAA+GGG - chr2_2:70288263-70288282 Msa0268500:CDS 45.0%
AATCAATTCGATCCCCCGAT+TGG + chr2_2:70289248-70289267 None:intergenic 45.0%
! AACCATAGAGTACTTGCCAC+TGG + chr2_2:70288169-70288188 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG + chr2_2:70288235-70288254 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG - chr2_2:70288262-70288281 Msa0268500:CDS 45.0%
TCTAGTTATTGGCACGGCAA+GGG - chr2_2:70288263-70288282 Msa0268500:CDS 45.0%
AATCAATTCGATCCCCCGAT+TGG + chr2_2:70289248-70289267 None:intergenic 45.0%
!!! ATATTTATATTTGTTATATA+AGG + chr2_2:70289075-70289094 None:intergenic 5.0%
!!! ATATTTATATTTGTTATATA+AGG + chr2_2:70289075-70289094 None:intergenic 5.0%
ATATCTCTCTGTGGCACCAG+TGG - chr2_2:70288150-70288169 Msa0268500:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG - chr2_2:70288164-70288183 Msa0268500:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG - chr2_2:70288171-70288190 Msa0268500:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG + chr2_2:70288234-70288253 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG - chr2_2:70288264-70288283 Msa0268500:CDS 50.0%
CAAAGGAGGTTCATGGCCAA+GGG - chr2_2:70288762-70288781 Msa0268500:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG - chr2_2:70288987-70289006 Msa0268500:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG - chr2_2:70289230-70289249 Msa0268500:intron 50.0%
AGTTTGTCCCCGATCCAATC+GGG - chr2_2:70289231-70289250 Msa0268500:intron 50.0%
ATTCGATCCCCCGATTGGAT+CGG + chr2_2:70289243-70289262 None:intergenic 50.0%
ATATCTCTCTGTGGCACCAG+TGG - chr2_2:70288150-70288169 Msa0268500:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG - chr2_2:70288164-70288183 Msa0268500:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG - chr2_2:70288171-70288190 Msa0268500:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG + chr2_2:70288234-70288253 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG - chr2_2:70288264-70288283 Msa0268500:CDS 50.0%
CAAAGGAGGTTCATGGCCAA+GGG - chr2_2:70288762-70288781 Msa0268500:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG - chr2_2:70288987-70289006 Msa0268500:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG - chr2_2:70289230-70289249 Msa0268500:intron 50.0%
AGTTTGTCCCCGATCCAATC+GGG - chr2_2:70289231-70289250 Msa0268500:intron 50.0%
ATTCGATCCCCCGATTGGAT+CGG + chr2_2:70289243-70289262 None:intergenic 50.0%
! CTATGGTTCGCGGTTCTAGC+AGG - chr2_2:70288181-70288200 Msa0268500:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG + chr2_2:70288764-70288783 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG - chr2_2:70288761-70288780 Msa0268500:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG - chr2_2:70289232-70289251 Msa0268500:intron 55.0%
TTTGTCCCCGATCCAATCGG+GGG - chr2_2:70289233-70289252 Msa0268500:intron 55.0%
TTCGATCCCCCGATTGGATC+GGG + chr2_2:70289242-70289261 None:intergenic 55.0%
! CTATGGTTCGCGGTTCTAGC+AGG - chr2_2:70288181-70288200 Msa0268500:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG + chr2_2:70288764-70288783 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG - chr2_2:70288761-70288780 Msa0268500:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG - chr2_2:70289232-70289251 Msa0268500:intron 55.0%
TTTGTCCCCGATCCAATCGG+GGG - chr2_2:70289233-70289252 Msa0268500:intron 55.0%
TTCGATCCCCCGATTGGATC+GGG + chr2_2:70289242-70289261 None:intergenic 55.0%
TCGATCCCCCGATTGGATCG+GGG + chr2_2:70289241-70289260 None:intergenic 60.0%
TCGATCCCCCGATTGGATCG+GGG + chr2_2:70289241-70289260 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70288091 70289512 70288091 ID=Msa0268500;Name=Msa0268500
chr2_2 mRNA 70288091 70289512 70288091 ID=Msa0268500-mRNA-1;Parent=Msa0268500;Name=Msa0268500-mRNA-1;_AED=0.31;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|177
chr2_2 exon 70289380 70289512 70289380 ID=Msa0268500-mRNA-1:exon:22597;Parent=Msa0268500-mRNA-1
chr2_2 exon 70288745 70288779 70288745 ID=Msa0268500-mRNA-1:exon:22596;Parent=Msa0268500-mRNA-1
chr2_2 exon 70288091 70288456 70288091 ID=Msa0268500-mRNA-1:exon:22595;Parent=Msa0268500-mRNA-1
chr2_2 CDS 70289380 70289512 70289380 ID=Msa0268500-mRNA-1:cds;Parent=Msa0268500-mRNA-1
chr2_2 CDS 70288745 70288779 70288745 ID=Msa0268500-mRNA-1:cds;Parent=Msa0268500-mRNA-1
chr2_2 CDS 70288091 70288456 70288091 ID=Msa0268500-mRNA-1:cds;Parent=Msa0268500-mRNA-1
Gene Sequence

>Msa0268500

ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTACTTTATCGACTTATTAGTCAACAAGGAAAAATATTATCTAGACGCGTGAATAGATCAACCTTAAAACAACAACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTGTTAATTCGTCACCTTTTGTGAATAATGAAAAAAAAAAATATGAAAAAAGCGAGTCGATCACTAGAACTCCTACTACTGTTCTAAAAAAAAACAAAAAATAG

Protein sequence

>Msa0268500

MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINLVIKRVLIRNLGKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSGDRIDYKNMSLLYRLISQQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVNSSPFVNNEKKKYEKSESITRTPTTVLKKNKK*