Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344240 | AES88250.1 | 82.000 | 100 | 12 | 2 | 28 | 121 | 66 | 165 | 1.18e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344240 | sp|Q09WZ5|RR18_MORIN | 84.722 | 72 | 11 | 0 | 46 | 117 | 1 | 72 | 1.86e-35 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344240 | G7JH54 | 82.000 | 100 | 12 | 2 | 28 | 121 | 66 | 165 | 5.62e-46 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039200 | Msa0344240 | 0.846595 | 1.967377e-59 | -8.615850e-47 |
| Msa0040190 | Msa0344240 | 0.833352 | 5.603002e-56 | -8.615850e-47 |
| Msa0086820 | Msa0344240 | 0.842740 | 2.149326e-58 | -8.615850e-47 |
| Msa0087880 | Msa0344240 | 0.857004 | 2.192656e-62 | -8.615850e-47 |
| Msa0095140 | Msa0344240 | 0.882057 | 1.432481e-70 | -8.615850e-47 |
| Msa0095240 | Msa0344240 | 0.906559 | 1.303057e-80 | -8.615850e-47 |
| Msa0095270 | Msa0344240 | 0.877596 | 5.535989e-69 | -8.615850e-47 |
| Msa0133670 | Msa0344240 | 0.847300 | 1.262129e-59 | -8.615850e-47 |
| Msa0133880 | Msa0344240 | 0.852028 | 6.038760e-61 | -8.615850e-47 |
| Msa0134550 | Msa0344240 | 0.838335 | 3.056947e-57 | -8.615850e-47 |
| Msa0141670 | Msa0344240 | 0.814904 | 1.214501e-51 | -8.615850e-47 |
| Msa0181290 | Msa0344240 | 0.821957 | 3.062415e-53 | -8.615850e-47 |
| Msa0184120 | Msa0344240 | 0.849432 | 3.246058e-60 | -8.615850e-47 |
| Msa0189050 | Msa0344240 | 0.809790 | 1.589641e-50 | -8.615850e-47 |
| Msa0193200 | Msa0344240 | 0.804196 | 2.425544e-49 | -8.615850e-47 |
| Msa0221860 | Msa0344240 | 0.873715 | 1.185800e-67 | -8.615850e-47 |
| Msa0231310 | Msa0344240 | 0.814329 | 1.628181e-51 | -8.615850e-47 |
| Msa0256170 | Msa0344240 | 0.802439 | 5.607725e-49 | -8.615850e-47 |
| Msa0268180 | Msa0344240 | 0.820923 | 5.306263e-53 | -8.615850e-47 |
| Msa0268220 | Msa0344240 | 0.882665 | 8.610473e-71 | -8.615850e-47 |
| Msa0268340 | Msa0344240 | 0.887754 | 1.080433e-72 | -8.615850e-47 |
| Msa0268420 | Msa0344240 | 0.818840 | 1.589070e-52 | -8.615850e-47 |
| Msa0268460 | Msa0344240 | 0.914876 | 1.145150e-84 | -8.615850e-47 |
| Msa0268500 | Msa0344240 | 0.900016 | 1.116867e-77 | -8.615850e-47 |
| Msa0268540 | Msa0344240 | 0.812728 | 3.663174e-51 | -8.615850e-47 |
| Msa0268680 | Msa0344240 | 0.892049 | 2.270147e-74 | -8.615850e-47 |
| Msa0268690 | Msa0344240 | 0.881836 | 1.723534e-70 | -8.615850e-47 |
| Msa0268730 | Msa0344240 | 0.829232 | 5.775957e-55 | -8.615850e-47 |
| Msa0268890 | Msa0344240 | 0.803963 | 2.712857e-49 | -8.615850e-47 |
| Msa0268900 | Msa0344240 | 0.902989 | 5.507617e-79 | -8.615850e-47 |
| Msa0268930 | Msa0344240 | 0.800855 | 1.184803e-48 | -8.615850e-47 |
| Msa0269060 | Msa0344240 | 0.813501 | 2.479656e-51 | -8.615850e-47 |
| Msa0269100 | Msa0344240 | 0.910481 | 1.785572e-82 | -8.615850e-47 |
| Msa0306130 | Msa0344240 | 0.826826 | 2.192388e-54 | -8.615850e-47 |
| Msa0309160 | Msa0344240 | 0.813826 | 2.102285e-51 | -8.615850e-47 |
| Msa0330270 | Msa0344240 | 0.809638 | 1.713948e-50 | -8.615850e-47 |
| Msa0338570 | Msa0344240 | 0.803394 | 3.559434e-49 | -8.615850e-47 |
| Msa0344200 | Msa0344240 | 0.827114 | 1.870779e-54 | -8.615850e-47 |
| Msa0344240 | Msa0344250 | 0.852710 | 3.861052e-61 | -8.615850e-47 |
| Msa0344240 | Msa0398610 | 0.818612 | 1.789873e-52 | -8.615850e-47 |
| Msa0344240 | Msa0398620 | 0.804710 | 1.895251e-49 | -8.615850e-47 |
| Msa0344240 | Msa0418000 | 0.812712 | 3.692481e-51 | -8.615850e-47 |
| Msa0344240 | Msa0423600 | 0.808037 | 3.770858e-50 | -8.615850e-47 |
| Msa0344240 | Msa0427050 | 0.840316 | 9.357823e-58 | -8.615850e-47 |
| Msa0344240 | Msa0449900 | 0.862271 | 5.703780e-64 | -8.615850e-47 |
| Msa0344240 | Msa0459120 | 0.806306 | 8.768822e-50 | -8.615850e-47 |
| Msa0344240 | Msa0463960 | 0.804404 | 2.195771e-49 | -8.615850e-47 |
| Msa0344240 | Msa0473450 | 0.815222 | 1.032739e-51 | -8.615850e-47 |
| Msa0344240 | Msa0475830 | 0.846320 | 2.339008e-59 | -8.615850e-47 |
| Msa0344240 | Msa0558890 | 0.807130 | 5.874669e-50 | -8.615850e-47 |
| Msa0344240 | Msa0582570 | 0.873011 | 2.045216e-67 | -8.615850e-47 |
| Msa0344240 | Msa0582580 | 0.872906 | 2.217856e-67 | -8.615850e-47 |
| Msa0344240 | Msa0582620 | 0.842862 | 1.995469e-58 | -8.615850e-47 |
| Msa0344240 | Msa0582740 | 0.840020 | 1.117696e-57 | -8.615850e-47 |
| Msa0344240 | Msa0591370 | 0.800948 | 1.134390e-48 | -8.615850e-47 |
| Msa0344240 | Msa0601780 | 0.802936 | 4.427615e-49 | -8.615850e-47 |
| Msa0344240 | Msa0606060 | 0.823543 | 1.308844e-53 | -8.615850e-47 |
| Msa0344240 | Msa0635990 | 0.815790 | 7.718796e-52 | -8.615850e-47 |
| Msa0344240 | Msa0662850 | 0.819507 | 1.120256e-52 | -8.615850e-47 |
| Msa0344240 | Msa0668630 | 0.862878 | 3.709021e-64 | -8.615850e-47 |
| Msa0344240 | Msa0686610 | 0.821957 | 3.063225e-53 | -8.615850e-47 |
| Msa0344240 | Msa0687320 | 0.805362 | 1.384691e-49 | -8.615850e-47 |
| Msa0344240 | Msa0706710 | 0.803537 | 3.325822e-49 | -8.615850e-47 |
| Msa0344240 | Msa0727040 | 0.814306 | 1.647554e-51 | -8.615850e-47 |
| Msa0344240 | Msa0736930 | 0.804176 | 2.448846e-49 | -8.615850e-47 |
| Msa0344240 | Msa0739570 | 0.818019 | 2.438745e-52 | -8.615850e-47 |
| Msa0344240 | Msa0766880 | 0.819008 | 1.455416e-52 | -8.615850e-47 |
| Msa0344240 | Msa0772210 | 0.851276 | 9.862071e-61 | -8.615850e-47 |
| Msa0344240 | Msa0778060 | 0.800206 | 1.606710e-48 | -8.615850e-47 |
| Msa0344240 | Msa0782330 | 0.815985 | 6.983253e-52 | -8.615850e-47 |
| Msa0344240 | Msa0804930 | 0.800716 | 1.264654e-48 | -8.615850e-47 |
| Msa0344240 | Msa0860270 | 0.830459 | 2.902279e-55 | -8.615850e-47 |
| Msa0344240 | Msa0924820 | 0.870162 | 1.797497e-66 | -8.615850e-47 |
| Msa0344240 | Msa0924970 | 0.858704 | 6.862510e-63 | -8.615850e-47 |
| Msa0344240 | Msa0925020 | 0.873035 | 2.007398e-67 | -8.615850e-47 |
| Msa0344240 | Msa0930990 | 0.846152 | 2.598452e-59 | -8.615850e-47 |
| Msa0344240 | Msa0978000 | 0.807374 | 5.214072e-50 | -8.615850e-47 |
| Msa0344240 | Msa0983670 | 0.848660 | 5.321370e-60 | -8.615850e-47 |
| Msa0344240 | Msa0988500 | 0.812634 | 3.842114e-51 | -8.615850e-47 |
| Msa0344240 | Msa1024580 | 0.805227 | 1.477713e-49 | -8.615850e-47 |
| Msa0344240 | Msa1049440 | 0.805093 | 1.576711e-49 | -8.615850e-47 |
| Msa0344240 | Msa1063180 | 0.810296 | 1.237098e-50 | -8.615850e-47 |
| Msa0344240 | Msa1079610 | 0.841382 | 4.915759e-58 | -8.615850e-47 |
| Msa0344240 | Msa1086020 | 0.903214 | 4.373125e-79 | -8.615850e-47 |
| Msa0344240 | Msa1086060 | 0.832770 | 7.820595e-56 | -8.615850e-47 |
| Msa0344240 | Msa1086160 | 0.824539 | 7.640040e-54 | -8.615850e-47 |
| Msa0344240 | Msa1086170 | 0.809465 | 1.867333e-50 | -8.615850e-47 |
| Msa0344240 | Msa1086260 | 0.801697 | 7.968788e-49 | -8.615850e-47 |
| Msa0344240 | Msa1086290 | 0.810694 | 1.014931e-50 | -8.615850e-47 |
| Msa0344240 | Msa1086330 | 0.876351 | 1.495817e-68 | -8.615850e-47 |
| Msa0344240 | Msa1086340 | 0.904547 | 1.095282e-79 | -8.615850e-47 |
| Msa0344240 | Msa1086370 | 0.820526 | 6.546377e-53 | -8.615850e-47 |
| Msa0344240 | Msa1086410 | 0.875603 | 2.705285e-68 | -8.615850e-47 |
| Msa0344240 | Msa1086440 | 0.807208 | 5.655985e-50 | -8.615850e-47 |
| Msa0344240 | Msa1086520 | 0.903011 | 5.388147e-79 | -8.615850e-47 |
| Msa0344240 | Msa1086630 | 0.879828 | 9.060780e-70 | -8.615850e-47 |
| Msa0344240 | Msa1086690 | 0.909721 | 4.164057e-82 | -8.615850e-47 |
| Msa0344240 | Msa1086830 | 0.874194 | 8.172617e-68 | -8.615850e-47 |
| Msa0344240 | Msa1086870 | 0.834103 | 3.637926e-56 | -8.615850e-47 |
| Msa0344240 | Msa1087000 | 0.888061 | 8.238800e-73 | -8.615850e-47 |
| Msa0344240 | Msa1108530 | 0.800882 | 1.170136e-48 | -8.615850e-47 |
| Msa0344240 | Msa1120540 | 0.821377 | 4.171146e-53 | -8.615850e-47 |
| Msa0344240 | Msa1123340 | 0.819415 | 1.175365e-52 | -8.615850e-47 |
| Msa0344240 | Msa1124440 | 0.831588 | 1.533374e-55 | -8.615850e-47 |
| Msa0344240 | Msa1152280 | 0.808622 | 2.829740e-50 | -8.615850e-47 |
| Msa0344240 | Msa1157160 | 0.827747 | 1.319143e-54 | -8.615850e-47 |
| Msa0344240 | Msa1168130 | 0.814468 | 1.517519e-51 | -8.615850e-47 |
| Msa0344240 | Msa1208070 | 0.806367 | 8.513046e-50 | -8.615850e-47 |
| Msa0344240 | Msa1211880 | 0.818473 | 1.924856e-52 | -8.615850e-47 |
| Msa0344240 | Msa1252040 | 0.801200 | 1.007259e-48 | -8.615850e-47 |
| Msa0344240 | Msa1354850 | 0.894220 | 3.026957e-75 | -8.615850e-47 |
| Msa0344240 | Msa1355020 | 0.883984 | 2.823401e-71 | -8.615850e-47 |
| Msa0344240 | Msa1355060 | 0.809869 | 1.528764e-50 | -8.615850e-47 |
| Msa0344240 | Msa1355260 | 0.816916 | 4.321387e-52 | -8.615850e-47 |
| Msa0344240 | Msa1371250 | 0.805371 | 1.378700e-49 | -8.615850e-47 |
| Msa0344240 | Msa1379370 | 0.803885 | 2.815448e-49 | -8.615850e-47 |
| Msa0344240 | Msa1380540 | 0.868392 | 6.754484e-66 | -8.615850e-47 |
| Msa0344240 | Msa1385450 | 0.822222 | 2.658193e-53 | -8.615850e-47 |
| Msa0344240 | Msa1385940 | 0.823867 | 1.099303e-53 | -8.615850e-47 |
| Msa0344240 | Msa1387090 | 0.843332 | 1.495761e-58 | -8.615850e-47 |
| Msa0344240 | Msa1390410 | 0.812724 | 3.671595e-51 | -8.615850e-47 |
| Msa0344240 | Msa1394090 | 0.881772 | 1.818475e-70 | -8.615850e-47 |
| Msa0344240 | Msa1394100 | 0.896413 | 3.777954e-76 | -8.615850e-47 |
| Msa0344240 | Msa1394280 | 0.883663 | 3.709240e-71 | -8.615850e-47 |
| Msa0344240 | Msa1415120 | 0.839756 | 1.309642e-57 | -8.615850e-47 |
| Msa0344240 | Msa1422750 | 0.826118 | 3.233452e-54 | -8.615850e-47 |
| Msa0344240 | Msa1428440 | 0.820324 | 7.284832e-53 | -8.615850e-47 |
| Msa0344240 | Msa1439160 | 0.828333 | 9.528518e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344240 | MtrunA17_Chr6g0466591 | 87.500 | 80 | 6 | 1 | 46 | 121 | 1 | 80 | 6.81e-42 | 134 |
| Msa0344240 | MtrunA17_Chr4g0016891 | 88.462 | 78 | 5 | 1 | 48 | 121 | 5 | 82 | 1.95e-40 | 130 |
| Msa0344240 | MtrunA17_Chr4g0015801 | 86.585 | 82 | 5 | 2 | 46 | 121 | 1 | 82 | 2.99e-40 | 130 |
| Msa0344240 | MtrunA17_CPg0492771 | 86.585 | 82 | 5 | 2 | 46 | 121 | 1 | 82 | 2.99e-40 | 130 |
| Msa0344240 | MtrunA17_Chr7g0237831 | 94.286 | 70 | 4 | 0 | 48 | 117 | 5 | 74 | 6.49e-40 | 127 |
| Msa0344240 | MtrunA17_Chr6g0465781 | 96.610 | 59 | 2 | 0 | 46 | 104 | 1 | 59 | 3.02e-34 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344240 | ATCG00650.1 | 81.944 | 72 | 13 | 0 | 46 | 117 | 1 | 72 | 2.32e-35 | 117 |
Find 12 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGTGGCAAGTACTCTA+TGG | 0.426592 | 3_1:+2719668 | Msa0344240:CDS |
| AGTTTGTCCCCGATCCAATC+GGG | 0.455483 | 3_1:+2720727 | Msa0344240:CDS |
| GAGTTTGTCCCCGATCCAAT+CGG | 0.465376 | 3_1:+2720726 | Msa0344240:CDS |
| AAAGGTGACGAATTAACAAA+AGG | 0.521079 | 3_1:-2720899 | None:intergenic |
| GGCAAGTACTCTATGGTTCG+CGG | 0.527936 | 3_1:+2719675 | Msa0344240:CDS |
| ATATCTCTCTGTGGCACCAG+TGG | 0.585814 | 3_1:+2719654 | Msa0344240:CDS |
| GAGTCGCTTAGATTTATCCA+TGG | 0.585856 | 3_1:-2720674 | None:intergenic |
| AACCATAGAGTACTTGCCAC+TGG | 0.586013 | 3_1:-2719670 | None:intergenic |
| GTATAGGAATAAACAAACCA+TGG | 0.629025 | 3_1:+2720657 | Msa0344240:CDS |
| TATCGACTTATTAGTCAACA+AGG | 0.637963 | 3_1:+2720784 | Msa0344240:CDS |
| GTTTGTCCCCGATCCAATCG+GGG | 0.647747 | 3_1:+2720728 | Msa0344240:CDS |
| TTTGTCCCCGATCCAATCGG+GGG | 0.661952 | 3_1:+2720729 | Msa0344240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGCAAATTAATTTAATAA+AGG | + | chr3_1:2719878-2719897 | Msa0344240:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | - | chr3_1:2719972-2719991 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | + | chr3_1:2720128-2720147 | Msa0344240:intron | 15.0% |
| !!! | AAATCCTTTTTTATAAGAAA+TGG | + | chr3_1:2720626-2720645 | Msa0344240:intron | 15.0% |
| !!! | AATCCTTTTTTATAAGAAAT+GGG | + | chr3_1:2720627-2720646 | Msa0344240:intron | 15.0% |
| !! | AGAGCAAATTAATTTAATAA+AGG | + | chr3_1:2719878-2719897 | Msa0344240:intron | 15.0% |
| !! | TATTATTAAATTCATAGCAA+TGG | - | chr3_1:2719972-2719991 | None:intergenic | 15.0% |
| !! | CTGTACTATATAAAATTAAT+TGG | + | chr3_1:2720128-2720147 | Msa0344240:intron | 15.0% |
| !!! | AAATCCTTTTTTATAAGAAA+TGG | + | chr3_1:2720626-2720645 | Msa0344240:intron | 15.0% |
| !!! | AATCCTTTTTTATAAGAAAT+GGG | + | chr3_1:2720627-2720646 | Msa0344240:intron | 15.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | - | chr3_1:2719605-2719624 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | + | chr3_1:2719604-2719623 | Msa0344240:CDS | 20.0% |
| !! | AATAACTAGAATCAAAAAAG+GGG | - | chr3_1:2719756-2719775 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+GGG | - | chr3_1:2719757-2719776 | None:intergenic | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | - | chr3_1:2719810-2719829 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | + | chr3_1:2719881-2719900 | Msa0344240:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | + | chr3_1:2719887-2719906 | Msa0344240:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | - | chr3_1:2720003-2720022 | None:intergenic | 20.0% |
| !! | ATATACGAATAACTGTTATT+TGG | + | chr3_1:2720289-2720308 | Msa0344240:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | + | chr3_1:2720325-2720344 | Msa0344240:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | + | chr3_1:2720459-2720478 | Msa0344240:intron | 20.0% |
| !! | AATCCCATTTCTTATAAAAA+AGG | - | chr3_1:2720633-2720652 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | + | chr3_1:2720635-2720654 | Msa0344240:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | - | chr3_1:2720842-2720861 | None:intergenic | 20.0% |
| !!! | TTCGTTTTTTTCTTGTAATT+TGG | - | chr3_1:2719605-2719624 | None:intergenic | 20.0% |
| !! | AAATTACAAGAAAAAAACGA+AGG | + | chr3_1:2719604-2719623 | Msa0344240:CDS | 20.0% |
| !! | AATAACTAGAATCAAAAAAG+GGG | - | chr3_1:2719756-2719775 | None:intergenic | 20.0% |
| !! | CAATAACTAGAATCAAAAAA+GGG | - | chr3_1:2719757-2719776 | None:intergenic | 20.0% |
| !!! | AGAGGGATTTAATATTTTAT+TGG | - | chr3_1:2719810-2719829 | None:intergenic | 20.0% |
| !! | GCAAATTAATTTAATAAAGG+TGG | + | chr3_1:2719881-2719900 | Msa0344240:intron | 20.0% |
| !!! | TAATTTAATAAAGGTGGATT+TGG | + | chr3_1:2719887-2719906 | Msa0344240:intron | 20.0% |
| !! | TTCTATTACAATTCCATTTA+TGG | - | chr3_1:2720003-2720022 | None:intergenic | 20.0% |
| !! | ATATACGAATAACTGTTATT+TGG | + | chr3_1:2720289-2720308 | Msa0344240:intron | 20.0% |
| !!! | TGATAAAAAGAGTGTTAATA+AGG | + | chr3_1:2720325-2720344 | Msa0344240:intron | 20.0% |
| !! | AGATAAAGAAATAGAGAAAA+TGG | + | chr3_1:2720459-2720478 | Msa0344240:intron | 20.0% |
| !! | AATCCCATTTCTTATAAAAA+AGG | - | chr3_1:2720633-2720652 | None:intergenic | 20.0% |
| !!! | TTTATAAGAAATGGGATTTT+CGG | + | chr3_1:2720635-2720654 | Msa0344240:intron | 20.0% |
| !!! | AATTAATCGTTGTTGTTTTA+AGG | - | chr3_1:2720842-2720861 | None:intergenic | 20.0% |
| ! | CCAATAACTAGAATCAAAAA+AGG | - | chr3_1:2719758-2719777 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGATTCTAGTTAT+TGG | + | chr3_1:2719755-2719774 | Msa0344240:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | - | chr3_1:2719827-2719846 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | - | chr3_1:2719828-2719847 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | + | chr3_1:2720007-2720026 | Msa0344240:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | + | chr3_1:2720008-2720027 | Msa0344240:intron | 25.0% |
| ! | AAGTGAATCAAAAAAACCAA+AGG | + | chr3_1:2720244-2720263 | Msa0344240:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | - | chr3_1:2720500-2720519 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | - | chr3_1:2720501-2720520 | None:intergenic | 25.0% |
| ! | CCAATAACTAGAATCAAAAA+AGG | - | chr3_1:2719758-2719777 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGATTCTAGTTAT+TGG | + | chr3_1:2719755-2719774 | Msa0344240:intron | 25.0% |
| ! | AAAAAAAAAACGAACGAAGA+GGG | - | chr3_1:2719827-2719846 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGAACGAAG+AGG | - | chr3_1:2719828-2719847 | None:intergenic | 25.0% |
| ! | TGGAATTGTAATAGAATACT+TGG | + | chr3_1:2720007-2720026 | Msa0344240:intron | 25.0% |
| ! | GGAATTGTAATAGAATACTT+GGG | + | chr3_1:2720008-2720027 | Msa0344240:intron | 25.0% |
| ! | AAGTGAATCAAAAAAACCAA+AGG | + | chr3_1:2720244-2720263 | Msa0344240:intron | 25.0% |
| ! | TTATAGAATTTACCTCCTAA+GGG | - | chr3_1:2720500-2720519 | None:intergenic | 25.0% |
| ! | TTTATAGAATTTACCTCCTA+AGG | - | chr3_1:2720501-2720520 | None:intergenic | 25.0% |
| TTACAAGAAAAAAACGAAGG+AGG | + | chr3_1:2719607-2719626 | Msa0344240:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | + | chr3_1:2719645-2719664 | Msa0344240:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | + | chr3_1:2719717-2719736 | Msa0344240:intron | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | + | chr3_1:2719760-2719779 | Msa0344240:intron | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | - | chr3_1:2719913-2719932 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | + | chr3_1:2719987-2720006 | Msa0344240:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | + | chr3_1:2720011-2720030 | Msa0344240:intron | 30.0% | |
| TGAATCAAAAAAACCAAAGG+AGG | + | chr3_1:2720247-2720266 | Msa0344240:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | - | chr3_1:2720280-2720299 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | + | chr3_1:2720333-2720352 | Msa0344240:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | + | chr3_1:2720334-2720353 | Msa0344240:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | + | chr3_1:2720335-2720354 | Msa0344240:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | - | chr3_1:2720431-2720450 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | - | chr3_1:2720432-2720451 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | + | chr3_1:2720657-2720676 | Msa0344240:CDS | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | + | chr3_1:2720704-2720723 | Msa0344240:CDS | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | + | chr3_1:2720784-2720803 | Msa0344240:CDS | 30.0% |
| TTACAAGAAAAAAACGAAGG+AGG | + | chr3_1:2719607-2719626 | Msa0344240:CDS | 30.0% | |
| TCTAAAAACATATCTCTCTG+TGG | + | chr3_1:2719645-2719664 | Msa0344240:CDS | 30.0% | |
| AGAAATCAATCGTTTATTCC+CGG | + | chr3_1:2719717-2719736 | Msa0344240:intron | 30.0% | |
| ! | TTTGATTCTAGTTATTGGCA+CGG | + | chr3_1:2719760-2719779 | Msa0344240:intron | 30.0% |
| AAAAACTCCTAATTTCACTG+AGG | - | chr3_1:2719913-2719932 | None:intergenic | 30.0% | |
| TAATAGAGTGAGACCATAAA+TGG | + | chr3_1:2719987-2720006 | Msa0344240:intron | 30.0% | |
| ATTGTAATAGAATACTTGGG+CGG | + | chr3_1:2720011-2720030 | Msa0344240:intron | 30.0% | |
| TGAATCAAAAAAACCAAAGG+AGG | + | chr3_1:2720247-2720266 | Msa0344240:intron | 30.0% | |
| TATTCGTATATCTTTACCCT+TGG | - | chr3_1:2720280-2720299 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAATAAGGAATCT+AGG | + | chr3_1:2720333-2720352 | Msa0344240:intron | 30.0% |
| GAGTGTTAATAAGGAATCTA+GGG | + | chr3_1:2720334-2720353 | Msa0344240:intron | 30.0% | |
| AGTGTTAATAAGGAATCTAG+GGG | + | chr3_1:2720335-2720354 | Msa0344240:intron | 30.0% | |
| ATCGTATGTTTGCAACAAAA+GGG | - | chr3_1:2720431-2720450 | None:intergenic | 30.0% | |
| AATCGTATGTTTGCAACAAA+AGG | - | chr3_1:2720432-2720451 | None:intergenic | 30.0% | |
| GTATAGGAATAAACAAACCA+TGG | + | chr3_1:2720657-2720676 | Msa0344240:CDS | 30.0% | |
| ! | AATCTAAGCAATCTTTTCGT+AGG | + | chr3_1:2720704-2720723 | Msa0344240:CDS | 30.0% |
| !! | TATCGACTTATTAGTCAACA+AGG | + | chr3_1:2720784-2720803 | Msa0344240:CDS | 30.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | + | chr3_1:2719916-2719935 | Msa0344240:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | - | chr3_1:2719936-2719955 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | - | chr3_1:2719937-2719956 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | + | chr3_1:2720012-2720031 | Msa0344240:intron | 35.0% | |
| ATTCGAAGCGAAGAAGAAAA+AGG | - | chr3_1:2720207-2720226 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | + | chr3_1:2720254-2720273 | Msa0344240:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | - | chr3_1:2720401-2720420 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | + | chr3_1:2720641-2720660 | Msa0344240:intron | 35.0% |
| ! | TGAAATTAGGAGTTTTTCCC+AGG | + | chr3_1:2719916-2719935 | Msa0344240:intron | 35.0% |
| CTTCAATTCCATTGAAACCT+GGG | - | chr3_1:2719936-2719955 | None:intergenic | 35.0% | |
| ACTTCAATTCCATTGAAACC+TGG | - | chr3_1:2719937-2719956 | None:intergenic | 35.0% | |
| TTGTAATAGAATACTTGGGC+GGG | + | chr3_1:2720012-2720031 | Msa0344240:intron | 35.0% | |
| ATTCGAAGCGAAGAAGAAAA+AGG | - | chr3_1:2720207-2720226 | None:intergenic | 35.0% | |
| AAAAAACCAAAGGAGGTTCA+TGG | + | chr3_1:2720254-2720273 | Msa0344240:intron | 35.0% | |
| TTTCTCAATTCCAATCGACT+AGG | - | chr3_1:2720401-2720420 | None:intergenic | 35.0% | |
| ! | AGAAATGGGATTTTCGGTAT+AGG | + | chr3_1:2720641-2720660 | Msa0344240:intron | 35.0% |
| GATTTGGCCTCAGTGAAATT+AGG | + | chr3_1:2719903-2719922 | Msa0344240:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | + | chr3_1:2719925-2719944 | Msa0344240:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | + | chr3_1:2720388-2720407 | Msa0344240:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | + | chr3_1:2720482-2720501 | Msa0344240:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | - | chr3_1:2720677-2720696 | None:intergenic | 40.0% | |
| GATTTGGCCTCAGTGAAATT+AGG | + | chr3_1:2719903-2719922 | Msa0344240:intron | 40.0% | |
| ! | GAGTTTTTCCCAGGTTTCAA+TGG | + | chr3_1:2719925-2719944 | Msa0344240:intron | 40.0% |
| ACACAATACACCTAGTCGAT+TGG | + | chr3_1:2720388-2720407 | Msa0344240:intron | 40.0% | |
| ATTGTTTGTGTGTCACCCTT+AGG | + | chr3_1:2720482-2720501 | Msa0344240:intron | 40.0% | |
| GAGTCGCTTAGATTTATCCA+TGG | - | chr3_1:2720677-2720696 | None:intergenic | 40.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | - | chr3_1:2719673-2719692 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | - | chr3_1:2719739-2719758 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | + | chr3_1:2719765-2719784 | Msa0344240:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | + | chr3_1:2719766-2719785 | Msa0344240:intron | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | - | chr3_1:2720744-2720763 | None:intergenic | 45.0% | |
| ! | AACCATAGAGTACTTGCCAC+TGG | - | chr3_1:2719673-2719692 | None:intergenic | 45.0% |
| AAGGGGAATGTCAATGCATC+CGG | - | chr3_1:2719739-2719758 | None:intergenic | 45.0% | |
| ! | TTCTAGTTATTGGCACGGCA+AGG | + | chr3_1:2719765-2719784 | Msa0344240:intron | 45.0% |
| TCTAGTTATTGGCACGGCAA+GGG | + | chr3_1:2719766-2719785 | Msa0344240:intron | 45.0% | |
| AATCAATTCGATCCCCCGAT+TGG | - | chr3_1:2720744-2720763 | None:intergenic | 45.0% | |
| !!! | ATATTTATATTTGTTATATA+AGG | - | chr3_1:2720573-2720592 | None:intergenic | 5.0% |
| !!! | ATATTTATATTTGTTATATA+AGG | - | chr3_1:2720573-2720592 | None:intergenic | 5.0% |
| ATATCTCTCTGTGGCACCAG+TGG | + | chr3_1:2719654-2719673 | Msa0344240:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | + | chr3_1:2719668-2719687 | Msa0344240:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | + | chr3_1:2719675-2719694 | Msa0344240:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | - | chr3_1:2719738-2719757 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | + | chr3_1:2719767-2719786 | Msa0344240:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | + | chr3_1:2720261-2720280 | Msa0344240:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | + | chr3_1:2720485-2720504 | Msa0344240:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | + | chr3_1:2720726-2720745 | Msa0344240:CDS | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | + | chr3_1:2720727-2720746 | Msa0344240:CDS | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | - | chr3_1:2720739-2720758 | None:intergenic | 50.0% | |
| ATATCTCTCTGTGGCACCAG+TGG | + | chr3_1:2719654-2719673 | Msa0344240:CDS | 50.0% | |
| CACCAGTGGCAAGTACTCTA+TGG | + | chr3_1:2719668-2719687 | Msa0344240:CDS | 50.0% | |
| GGCAAGTACTCTATGGTTCG+CGG | + | chr3_1:2719675-2719694 | Msa0344240:CDS | 50.0% | |
| AGGGGAATGTCAATGCATCC+GGG | - | chr3_1:2719738-2719757 | None:intergenic | 50.0% | |
| CTAGTTATTGGCACGGCAAG+GGG | + | chr3_1:2719767-2719786 | Msa0344240:intron | 50.0% | |
| CAAAGGAGGTTCATGGCCAA+GGG | + | chr3_1:2720261-2720280 | Msa0344240:intron | 50.0% | |
| GTTTGTGTGTCACCCTTAGG+AGG | + | chr3_1:2720485-2720504 | Msa0344240:intron | 50.0% | |
| GAGTTTGTCCCCGATCCAAT+CGG | + | chr3_1:2720726-2720745 | Msa0344240:CDS | 50.0% | |
| AGTTTGTCCCCGATCCAATC+GGG | + | chr3_1:2720727-2720746 | Msa0344240:CDS | 50.0% | |
| ATTCGATCCCCCGATTGGAT+CGG | - | chr3_1:2720739-2720758 | None:intergenic | 50.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | + | chr3_1:2719685-2719704 | Msa0344240:intron | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | - | chr3_1:2720263-2720282 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | + | chr3_1:2720260-2720279 | Msa0344240:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | + | chr3_1:2720728-2720747 | Msa0344240:CDS | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | + | chr3_1:2720729-2720748 | Msa0344240:CDS | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | - | chr3_1:2720738-2720757 | None:intergenic | 55.0% | |
| ! | CTATGGTTCGCGGTTCTAGC+AGG | + | chr3_1:2719685-2719704 | Msa0344240:intron | 55.0% |
| CCTTGGCCATGAACCTCCTT+TGG | - | chr3_1:2720263-2720282 | None:intergenic | 55.0% | |
| CCAAAGGAGGTTCATGGCCA+AGG | + | chr3_1:2720260-2720279 | Msa0344240:intron | 55.0% | |
| GTTTGTCCCCGATCCAATCG+GGG | + | chr3_1:2720728-2720747 | Msa0344240:CDS | 55.0% | |
| TTTGTCCCCGATCCAATCGG+GGG | + | chr3_1:2720729-2720748 | Msa0344240:CDS | 55.0% | |
| TTCGATCCCCCGATTGGATC+GGG | - | chr3_1:2720738-2720757 | None:intergenic | 55.0% | |
| TCGATCCCCCGATTGGATCG+GGG | - | chr3_1:2720737-2720756 | None:intergenic | 60.0% | |
| TCGATCCCCCGATTGGATCG+GGG | - | chr3_1:2720737-2720756 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 2719595 | 2720909 | 2719595 | ID=Msa0344240;Name=Msa0344240 |
| chr3_1 | mRNA | 2719595 | 2720909 | 2719595 | ID=Msa0344240-mRNA-1;Parent=Msa0344240;Name=Msa0344240-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|122 |
| chr3_1 | exon | 2719595 | 2719696 | 2719595 | ID=Msa0344240-mRNA-1:exon:886;Parent=Msa0344240-mRNA-1 |
| chr3_1 | exon | 2720643 | 2720909 | 2720643 | ID=Msa0344240-mRNA-1:exon:887;Parent=Msa0344240-mRNA-1 |
| chr3_1 | CDS | 2719595 | 2719696 | 2719595 | ID=Msa0344240-mRNA-1:cds;Parent=Msa0344240-mRNA-1 |
| chr3_1 | CDS | 2720643 | 2720909 | 2720643 | ID=Msa0344240-mRNA-1:cds;Parent=Msa0344240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
