AlfalfaGEDB | Msa0221860

M. sativa cultivar zhongmu-4 / Msa0221860

KEGG: K02108
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1902600
PFAM: PF01701.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221860	AES88250.1	83.721	43	5	1	43	83	73	115	3.67e-12	70.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221860	sp\|Q9BBR3\|PSAJ_LOTJA	78.947	38	8	0	1	38	1	38	6.63e-13	60.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221860	G7JH54	83.721	43	5	1	43	83	73	115	1.75e-12	70.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016830	Msa0221860	0.802203	6.271685e-49	-8.615850e-47
Msa0030710	Msa0221860	0.810995	8.734370e-51	-8.615850e-47
Msa0032040	Msa0221860	0.833766	4.417170e-56	-8.615850e-47
Msa0033600	Msa0221860	0.802878	4.552708e-49	-8.615850e-47
Msa0033650	Msa0221860	0.802513	5.415180e-49	-8.615850e-47
Msa0034800	Msa0221860	0.845432	4.076390e-59	-8.615850e-47
Msa0035090	Msa0221860	0.836400	9.565897e-57	-8.615850e-47
Msa0039200	Msa0221860	0.862531	4.743697e-64	-8.615850e-47
Msa0040190	Msa0221860	0.876185	1.707260e-68	-8.615850e-47
Msa0057740	Msa0221860	0.810316	1.224971e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221860	MtrunA17_Chr4g0016881	100.000	30	1	30	1	30	4.06e-15	63.2
Msa0221860	MtrunA17_CPg0492791	100.000	30	1	30	1	30	4.99e-15	62.8
Msa0221860	MtrunA17_Chr4g0015781	100.000	30	1	30	1	30	4.99e-15	62.8
Msa0221860	MtrunA17_Chr4g0028951	100.000	30	1	30	1	30	4.99e-15	62.8
Msa0221860	MtrunA17_Chr8g0355611	100.000	30	1	30	1	30	4.99e-15	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221860	ATCG00630.1	90.000	30	3	0	1	30	1	30	1.73e-12	57.0

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Find 14 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATAGAGTACTTGCCAC+TGG	0.586013	2_1:-70650010	None:intergenic
AACCTAATAAAAGATTGGAT+CGG	0.529575	2_1:-70651105	None:intergenic
ACCTAATAAAAGATTGGATC+GGG	0.419736	2_1:-70651104	None:intergenic
AGAACAACCTAATAAAAGAT+TGG	0.459837	2_1:-70651110	None:intergenic
AGAGTGTTAATAAGGAATCT+AGG	0.329597	2_1:+70650685	Msa0221860:CDS
AGTGTTAATAAGGAATCTAG+GGG	0.667965	2_1:+70650687	Msa0221860:CDS
ATATCTCTCTGTGGCACCAG+TGG	0.585814	2_1:+70649994	Msa0221860:CDS
CACCAGTGGCAAGTACTCTA+TGG	0.426592	2_1:+70650008	Msa0221860:CDS
CCTAATAAAAGATTGGATCG+GGG	0.685110	2_1:-70651103	None:intergenic
CTATGGTTCGCGGTTCTAGC+AGG	0.487956	2_1:+70650025	Msa0221860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTAAAAACATATCTCTCTG+TGG	+	chr2_1:70649985-70650004	Msa0221860:CDS	30.0%
AGAAATCAATCGTTTATTCC+CGG	+	chr2_1:70650057-70650076	Msa0221860:intron	30.0%
AAAAACTCCTAATTTCACTG+AGG	-	chr2_1:70650256-70650275	None:intergenic	30.0%
TAATAGAGTGAGACCATAAA+TGG	+	chr2_1:70650330-70650349	Msa0221860:intron	30.0%
ATTGTAATAGAATACTTGGG+CGG	+	chr2_1:70650354-70650373	Msa0221860:intron	30.0%
GAATCAAAAAAAACCAAAGG+AGG	+	chr2_1:70650598-70650617	Msa0221860:intron	30.0%
TATTCGTATATCTTTACCCT+TGG	-	chr2_1:70650631-70650650	None:intergenic	30.0%
GAGTGTTAATAAGGAATCTA+GGG	+	chr2_1:70650686-70650705	Msa0221860:CDS	30.0%
AGTGTTAATAAGGAATCTAG+GGG	+	chr2_1:70650687-70650706	Msa0221860:CDS	30.0%
ATCGTATGTTTGCAACAAAA+GGG	-	chr2_1:70650783-70650802	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	70649977	70651161	70649977	ID=Msa0221860;Name=Msa0221860
chr2_1	mRNA	70649977	70651161	70649977	ID=Msa0221860-mRNA-1;Parent=Msa0221860;Name=Msa0221860-mRNA-1;_AED=0.41;_eAED=0.49;_QI=0\|0\|0\|1\|0\|0\|3\|0\|91
chr2_1	exon	70649977	70650067	70649977	ID=Msa0221860-mRNA-1:exon:20271;Parent=Msa0221860-mRNA-1
chr2_1	exon	70650674	70650708	70650674	ID=Msa0221860-mRNA-1:exon:20272;Parent=Msa0221860-mRNA-1
chr2_1	exon	70651012	70651161	70651012	ID=Msa0221860-mRNA-1:exon:20273;Parent=Msa0221860-mRNA-1
chr2_1	CDS	70649977	70650067	70649977	ID=Msa0221860-mRNA-1:cds;Parent=Msa0221860-mRNA-1
chr2_1	CDS	70650674	70650708	70650674	ID=Msa0221860-mRNA-1:cds;Parent=Msa0221860-mRNA-1
chr2_1	CDS	70651012	70651161	70651012	ID=Msa0221860-mRNA-1:cds;Parent=Msa0221860-mRNA-1

Gene Sequence	>Msa0221860 ATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCTTTTATTAGGTTGTTCTTTTCCCAAAAAAAAAAACATAATAATTAA
Protein sequence	>Msa0221860 MRDLKTYLSVAPVASTLWFAVLAGLLIEINLVIKRVLIRNLGKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSFIRLFFSQKKKHNN*