AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086020 MtrunA17_Chr4g0015801 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa1086020 MtrunA17_CPg0492771 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa1086020 MtrunA17_Chr6g0466591 88.889 90 6 1 68 153 1 90 1.93e-48 153
Msa1086020 MtrunA17_Chr4g0016891 86.957 92 8 2 68 155 1 92 4.39e-45 144
Msa1086020 MtrunA17_Chr7g0237831 94.667 75 2 1 68 140 1 75 5.92e-41 132
Msa1086020 MtrunA17_Chr6g0465781 96.610 59 2 0 68 126 1 59 1.31e-33 113
Msa1086020 MtrunA17_CPg0492791 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa1086020 MtrunA17_Chr4g0015781 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa1086020 MtrunA17_Chr4g0028951 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa1086020 MtrunA17_Chr8g0355611 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa1086020 MtrunA17_Chr4g0016881 100.000 30 0 0 15 44 1 30 5.50e-14 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086020 ATCG00650.1 70.909 110 23 2 68 177 1 101 8.00e-44 141
Msa1086020 ATCG00630.1 90.000 30 3 0 15 44 1 30 1.53e-11 57.0

Find 16 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTGTTAATAAGGAATCT+AGG 0.329597 7_2:-87099023 Msa1086020:CDS
CACCAGTGGCAAGTACTCTA+TGG 0.426592 7_2:-87099694 Msa1086020:CDS
GAGTGTTAATAAGGAATCTA+GGG 0.452009 7_2:-87099022 Msa1086020:CDS
AGTTTGTCCCCGATCCAATC+GGG 0.455483 7_2:-87098627 Msa1086020:CDS
GAGTTTGTCCCCGATCCAAT+CGG 0.465376 7_2:-87098628 Msa1086020:CDS
CTATGGTTCGCGGTTCTAGC+AGG 0.487956 7_2:-87099677 Msa1086020:CDS
AAAGGTGACGAATTAACAAA+AGG 0.521079 7_2:+87098453 None:intergenic
GGCAAGTACTCTATGGTTCG+CGG 0.527936 7_2:-87099687 Msa1086020:CDS
ATATCTCTCTGTGGCACCAG+TGG 0.585814 7_2:-87099708 Msa1086020:CDS
GAGTCGCTTAGATTTATCCA+TGG 0.585856 7_2:+87098680 None:intergenic
AACCATAGAGTACTTGCCAC+TGG 0.586013 7_2:+87099692 None:intergenic
GTATAGGAATAAACAAACCA+TGG 0.629025 7_2:-87098697 Msa1086020:CDS
TATCGACTTATTAGTCAACA+AGG 0.637963 7_2:-87098570 Msa1086020:CDS
GTTTGTCCCCGATCCAATCG+GGG 0.647747 7_2:-87098626 Msa1086020:CDS
TTTGTCCCCGATCCAATCGG+GGG 0.661952 7_2:-87098625 Msa1086020:CDS
AGTGTTAATAAGGAATCTAG+GGG 0.667965 7_2:-87099021 Msa1086020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTAGAATCAAAAAAA+GGG + chr7_2:87098530-87098549 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG - chr7_2:87098654-87098673 Msa1086020:CDS 15.0%
!! TATTATTAAATTCATAGCAA+TGG + chr7_2:87098748-87098767 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG - chr7_2:87098904-87098923 Msa1086020:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG - chr7_2:87099407-87099426 Msa1086020:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG - chr7_2:87099408-87099427 Msa1086020:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG + chr7_2:87099703-87099722 None:intergenic 15.0%
!! AATAACTAGAATCAAAAAAA+GGG + chr7_2:87098530-87098549 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG - chr7_2:87098654-87098673 Msa1086020:CDS 15.0%
!! TATTATTAAATTCATAGCAA+TGG + chr7_2:87098748-87098767 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG - chr7_2:87098904-87098923 Msa1086020:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG - chr7_2:87099407-87099426 Msa1086020:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG - chr7_2:87099408-87099427 Msa1086020:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG + chr7_2:87099703-87099722 None:intergenic 15.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG + chr7_2:87098378-87098397 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG - chr7_2:87098377-87098396 Msa1086020:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG + chr7_2:87098529-87098548 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG + chr7_2:87098531-87098550 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG - chr7_2:87098529-87098548 Msa1086020:CDS 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG + chr7_2:87098584-87098603 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG - chr7_2:87098657-87098676 Msa1086020:CDS 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG - chr7_2:87098663-87098682 Msa1086020:CDS 20.0%
!! TTCTATTACAATTCCATTTA+TGG + chr7_2:87098779-87098798 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG - chr7_2:87099068-87099087 Msa1086020:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG - chr7_2:87099104-87099123 Msa1086020:intron 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG - chr7_2:87099238-87099257 Msa1086020:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG + chr7_2:87099413-87099432 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG - chr7_2:87099416-87099435 Msa1086020:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG + chr7_2:87099623-87099642 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG + chr7_2:87099760-87099779 None:intergenic 20.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG + chr7_2:87098378-87098397 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG - chr7_2:87098377-87098396 Msa1086020:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG + chr7_2:87098529-87098548 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG + chr7_2:87098531-87098550 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG - chr7_2:87098529-87098548 Msa1086020:CDS 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG + chr7_2:87098584-87098603 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG - chr7_2:87098657-87098676 Msa1086020:CDS 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG - chr7_2:87098663-87098682 Msa1086020:CDS 20.0%
!! TTCTATTACAATTCCATTTA+TGG + chr7_2:87098779-87098798 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG - chr7_2:87099068-87099087 Msa1086020:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG - chr7_2:87099104-87099123 Msa1086020:intron 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG - chr7_2:87099238-87099257 Msa1086020:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG + chr7_2:87099413-87099432 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG - chr7_2:87099416-87099435 Msa1086020:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG + chr7_2:87099623-87099642 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG + chr7_2:87099760-87099779 None:intergenic 20.0%
! AAAAAAAAAACGAACGAAGA+GGG + chr7_2:87098601-87098620 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG + chr7_2:87098602-87098621 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG - chr7_2:87098783-87098802 Msa1086020:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG - chr7_2:87098784-87098803 Msa1086020:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG - chr7_2:87099022-87099041 Msa1086020:CDS 25.0%
! TTATAGAATTTACCTCCTAA+GGG + chr7_2:87099279-87099298 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG + chr7_2:87099280-87099299 None:intergenic 25.0%
! AAAAAAAAAACGAACGAAGA+GGG + chr7_2:87098601-87098620 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG + chr7_2:87098602-87098621 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG - chr7_2:87098783-87098802 Msa1086020:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG - chr7_2:87098784-87098803 Msa1086020:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG - chr7_2:87099022-87099041 Msa1086020:CDS 25.0%
! TTATAGAATTTACCTCCTAA+GGG + chr7_2:87099279-87099298 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG + chr7_2:87099280-87099299 None:intergenic 25.0%
TTACAAGAAAAAAACGAAGG+AGG - chr7_2:87098380-87098399 Msa1086020:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG - chr7_2:87098418-87098437 Msa1086020:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG - chr7_2:87098490-87098509 Msa1086020:CDS 30.0%
! TTTGATTCTAGTTATTGGCA+CGG - chr7_2:87098534-87098553 Msa1086020:CDS 30.0%
AAAAACTCCTAATTTCACTG+AGG + chr7_2:87098689-87098708 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG - chr7_2:87098763-87098782 Msa1086020:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG - chr7_2:87098787-87098806 Msa1086020:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG - chr7_2:87099025-87099044 Msa1086020:CDS 30.0%
TATTCGTATATCTTTACCCT+TGG + chr7_2:87099058-87099077 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG - chr7_2:87099112-87099131 Msa1086020:intron 30.0%
GAGTGTTAATAAGGAATCTA+GGG - chr7_2:87099113-87099132 Msa1086020:intron 30.0%
AGTGTTAATAAGGAATCTAG+GGG - chr7_2:87099114-87099133 Msa1086020:intron 30.0%
ATCGTATGTTTGCAACAAAA+GGG + chr7_2:87099210-87099229 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG + chr7_2:87099211-87099230 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG - chr7_2:87099438-87099457 Msa1086020:intron 30.0%
! AATCTAAGCAATCTTTTCGT+AGG - chr7_2:87099485-87099504 Msa1086020:intron 30.0%
!! TATCGACTTATTAGTCAACA+AGG - chr7_2:87099565-87099584 Msa1086020:intron 30.0%
AAAGGTGACGAATTAACAAA+AGG + chr7_2:87099685-87099704 None:intergenic 30.0%
TTACAAGAAAAAAACGAAGG+AGG - chr7_2:87098380-87098399 Msa1086020:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG - chr7_2:87098418-87098437 Msa1086020:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG - chr7_2:87098490-87098509 Msa1086020:CDS 30.0%
! TTTGATTCTAGTTATTGGCA+CGG - chr7_2:87098534-87098553 Msa1086020:CDS 30.0%
AAAAACTCCTAATTTCACTG+AGG + chr7_2:87098689-87098708 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG - chr7_2:87098763-87098782 Msa1086020:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG - chr7_2:87098787-87098806 Msa1086020:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG - chr7_2:87099025-87099044 Msa1086020:CDS 30.0%
TATTCGTATATCTTTACCCT+TGG + chr7_2:87099058-87099077 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG - chr7_2:87099112-87099131 Msa1086020:intron 30.0%
GAGTGTTAATAAGGAATCTA+GGG - chr7_2:87099113-87099132 Msa1086020:intron 30.0%
AGTGTTAATAAGGAATCTAG+GGG - chr7_2:87099114-87099133 Msa1086020:intron 30.0%
ATCGTATGTTTGCAACAAAA+GGG + chr7_2:87099210-87099229 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG + chr7_2:87099211-87099230 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG - chr7_2:87099438-87099457 Msa1086020:intron 30.0%
! AATCTAAGCAATCTTTTCGT+AGG - chr7_2:87099485-87099504 Msa1086020:intron 30.0%
!! TATCGACTTATTAGTCAACA+AGG - chr7_2:87099565-87099584 Msa1086020:intron 30.0%
AAAGGTGACGAATTAACAAA+AGG + chr7_2:87099685-87099704 None:intergenic 30.0%
! TGAAATTAGGAGTTTTTCCC+AGG - chr7_2:87098692-87098711 Msa1086020:CDS 35.0%
CTTCAATTCCATTGAAACCT+GGG + chr7_2:87098712-87098731 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG + chr7_2:87098713-87098732 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG - chr7_2:87098788-87098807 Msa1086020:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG + chr7_2:87098983-87099002 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG - chr7_2:87099032-87099051 Msa1086020:CDS 35.0%
TTTCTCAATTCCAATCGACT+AGG + chr7_2:87099180-87099199 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG - chr7_2:87099422-87099441 Msa1086020:intron 35.0%
! TGAAATTAGGAGTTTTTCCC+AGG - chr7_2:87098692-87098711 Msa1086020:CDS 35.0%
CTTCAATTCCATTGAAACCT+GGG + chr7_2:87098712-87098731 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG + chr7_2:87098713-87098732 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG - chr7_2:87098788-87098807 Msa1086020:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG + chr7_2:87098983-87099002 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG - chr7_2:87099032-87099051 Msa1086020:CDS 35.0%
TTTCTCAATTCCAATCGACT+AGG + chr7_2:87099180-87099199 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG - chr7_2:87099422-87099441 Msa1086020:intron 35.0%
GATTTGGCCTCAGTGAAATT+AGG - chr7_2:87098679-87098698 Msa1086020:CDS 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG - chr7_2:87098701-87098720 Msa1086020:CDS 40.0%
ACACAATACACCTAGTCGAT+TGG - chr7_2:87099167-87099186 Msa1086020:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG - chr7_2:87099261-87099280 Msa1086020:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG + chr7_2:87099458-87099477 None:intergenic 40.0%
GATTTGGCCTCAGTGAAATT+AGG - chr7_2:87098679-87098698 Msa1086020:CDS 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG - chr7_2:87098701-87098720 Msa1086020:CDS 40.0%
ACACAATACACCTAGTCGAT+TGG - chr7_2:87099167-87099186 Msa1086020:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG - chr7_2:87099261-87099280 Msa1086020:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG + chr7_2:87099458-87099477 None:intergenic 40.0%
! AACCATAGAGTACTTGCCAC+TGG + chr7_2:87098446-87098465 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG + chr7_2:87098512-87098531 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG - chr7_2:87098539-87098558 Msa1086020:CDS 45.0%
TCTAGTTATTGGCACGGCAA+GGG - chr7_2:87098540-87098559 Msa1086020:CDS 45.0%
AATCAATTCGATCCCCCGAT+TGG + chr7_2:87099525-87099544 None:intergenic 45.0%
! AACCATAGAGTACTTGCCAC+TGG + chr7_2:87098446-87098465 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG + chr7_2:87098512-87098531 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG - chr7_2:87098539-87098558 Msa1086020:CDS 45.0%
TCTAGTTATTGGCACGGCAA+GGG - chr7_2:87098540-87098559 Msa1086020:CDS 45.0%
AATCAATTCGATCCCCCGAT+TGG + chr7_2:87099525-87099544 None:intergenic 45.0%
!!! ATATTTATATTTGTTATATA+AGG + chr7_2:87099352-87099371 None:intergenic 5.0%
!!! ATATTTATATTTGTTATATA+AGG + chr7_2:87099352-87099371 None:intergenic 5.0%
ATATCTCTCTGTGGCACCAG+TGG - chr7_2:87098427-87098446 Msa1086020:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG - chr7_2:87098441-87098460 Msa1086020:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG - chr7_2:87098448-87098467 Msa1086020:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG + chr7_2:87098511-87098530 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG - chr7_2:87098541-87098560 Msa1086020:CDS 50.0%
CAAAGGAGGTTCATGGCCAA+GGG - chr7_2:87099039-87099058 Msa1086020:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG - chr7_2:87099264-87099283 Msa1086020:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG - chr7_2:87099507-87099526 Msa1086020:intron 50.0%
AGTTTGTCCCCGATCCAATC+GGG - chr7_2:87099508-87099527 Msa1086020:intron 50.0%
ATTCGATCCCCCGATTGGAT+CGG + chr7_2:87099520-87099539 None:intergenic 50.0%
ATATCTCTCTGTGGCACCAG+TGG - chr7_2:87098427-87098446 Msa1086020:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG - chr7_2:87098441-87098460 Msa1086020:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG - chr7_2:87098448-87098467 Msa1086020:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG + chr7_2:87098511-87098530 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG - chr7_2:87098541-87098560 Msa1086020:CDS 50.0%
CAAAGGAGGTTCATGGCCAA+GGG - chr7_2:87099039-87099058 Msa1086020:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG - chr7_2:87099264-87099283 Msa1086020:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG - chr7_2:87099507-87099526 Msa1086020:intron 50.0%
AGTTTGTCCCCGATCCAATC+GGG - chr7_2:87099508-87099527 Msa1086020:intron 50.0%
ATTCGATCCCCCGATTGGAT+CGG + chr7_2:87099520-87099539 None:intergenic 50.0%
! CTATGGTTCGCGGTTCTAGC+AGG - chr7_2:87098458-87098477 Msa1086020:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG + chr7_2:87099041-87099060 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG - chr7_2:87099038-87099057 Msa1086020:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG - chr7_2:87099509-87099528 Msa1086020:intron 55.0%
TTTGTCCCCGATCCAATCGG+GGG - chr7_2:87099510-87099529 Msa1086020:intron 55.0%
TTCGATCCCCCGATTGGATC+GGG + chr7_2:87099519-87099538 None:intergenic 55.0%
! CTATGGTTCGCGGTTCTAGC+AGG - chr7_2:87098458-87098477 Msa1086020:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG + chr7_2:87099041-87099060 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG - chr7_2:87099038-87099057 Msa1086020:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG - chr7_2:87099509-87099528 Msa1086020:intron 55.0%
TTTGTCCCCGATCCAATCGG+GGG - chr7_2:87099510-87099529 Msa1086020:intron 55.0%
TTCGATCCCCCGATTGGATC+GGG + chr7_2:87099519-87099538 None:intergenic 55.0%
TCGATCCCCCGATTGGATCG+GGG + chr7_2:87099518-87099537 None:intergenic 60.0%
TCGATCCCCCGATTGGATCG+GGG + chr7_2:87099518-87099537 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87098368 87099789 87098368 ID=Msa1086020;Name=Msa1086020
chr7_2 mRNA 87098368 87099789 87098368 ID=Msa1086020-mRNA-1;Parent=Msa1086020;Name=Msa1086020-mRNA-1;_AED=0.31;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|177
chr7_2 exon 87099657 87099789 87099657 ID=Msa1086020-mRNA-1:exon:23703;Parent=Msa1086020-mRNA-1
chr7_2 exon 87099022 87099056 87099022 ID=Msa1086020-mRNA-1:exon:23702;Parent=Msa1086020-mRNA-1
chr7_2 exon 87098368 87098733 87098368 ID=Msa1086020-mRNA-1:exon:23701;Parent=Msa1086020-mRNA-1
chr7_2 CDS 87099657 87099789 87099657 ID=Msa1086020-mRNA-1:cds;Parent=Msa1086020-mRNA-1
chr7_2 CDS 87099022 87099056 87099022 ID=Msa1086020-mRNA-1:cds;Parent=Msa1086020-mRNA-1
chr7_2 CDS 87098368 87098733 87098368 ID=Msa1086020-mRNA-1:cds;Parent=Msa1086020-mRNA-1
Gene Sequence

>Msa1086020

ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTACTTTATCGACTTATTAGTCAACAAGGAAAAATATTATCTAGACGCGTGAATAGATCAACCTTAAAACAACAACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTGTTAATTCGTCACCTTTTGTGAATAATGAAAAAAAAAAATATGAAAAAAGCGAGTCGATCACTAGAACTCCTACTACTGTTCTAAAAAAAAACAAAAAATAG

Protein sequence

>Msa1086020

MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINLVIKRVLIRNLGKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSGDRIDYKNMSLLYRLISQQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVNSSPFVNNEKKKYEKSESITRTPTTVLKKNKK*