AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095240 MtrunA17_Chr4g0015801 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa0095240 MtrunA17_CPg0492771 81.301 123 10 3 68 177 1 123 5.46e-50 157
Msa0095240 MtrunA17_Chr6g0466591 88.889 90 6 1 68 153 1 90 1.93e-48 153
Msa0095240 MtrunA17_Chr4g0016891 86.957 92 8 2 68 155 1 92 4.39e-45 144
Msa0095240 MtrunA17_Chr7g0237831 94.667 75 2 1 68 140 1 75 5.92e-41 132
Msa0095240 MtrunA17_Chr6g0465781 96.610 59 2 0 68 126 1 59 1.31e-33 113
Msa0095240 MtrunA17_CPg0492791 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0095240 MtrunA17_Chr4g0015781 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0095240 MtrunA17_Chr4g0028951 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0095240 MtrunA17_Chr8g0355611 100.000 30 0 0 15 44 1 30 2.84e-14 63.5
Msa0095240 MtrunA17_Chr4g0016881 100.000 30 0 0 15 44 1 30 5.50e-14 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095240 ATCG00650.1 70.909 110 23 2 68 177 1 101 8.00e-44 141
Msa0095240 ATCG00630.1 90.000 30 3 0 15 44 1 30 1.53e-11 57.0

Find 16 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTGTTAATAAGGAATCT+AGG 0.329597 1_2:+79042052 Msa0095240:CDS
CACCAGTGGCAAGTACTCTA+TGG 0.426592 1_2:+79041381 Msa0095240:CDS
GAGTGTTAATAAGGAATCTA+GGG 0.452009 1_2:+79042053 Msa0095240:CDS
AGTTTGTCCCCGATCCAATC+GGG 0.455483 1_2:+79042448 Msa0095240:CDS
GAGTTTGTCCCCGATCCAAT+CGG 0.465376 1_2:+79042447 Msa0095240:CDS
CTATGGTTCGCGGTTCTAGC+AGG 0.487956 1_2:+79041398 Msa0095240:CDS
AAAGGTGACGAATTAACAAA+AGG 0.521079 1_2:-79042622 None:intergenic
GGCAAGTACTCTATGGTTCG+CGG 0.527936 1_2:+79041388 Msa0095240:CDS
ATATCTCTCTGTGGCACCAG+TGG 0.585814 1_2:+79041367 Msa0095240:CDS
GAGTCGCTTAGATTTATCCA+TGG 0.585856 1_2:-79042395 None:intergenic
AACCATAGAGTACTTGCCAC+TGG 0.586013 1_2:-79041383 None:intergenic
GTATAGGAATAAACAAACCA+TGG 0.629025 1_2:+79042378 Msa0095240:CDS
TATCGACTTATTAGTCAACA+AGG 0.637963 1_2:+79042505 Msa0095240:CDS
GTTTGTCCCCGATCCAATCG+GGG 0.647747 1_2:+79042449 Msa0095240:CDS
TTTGTCCCCGATCCAATCGG+GGG 0.661952 1_2:+79042450 Msa0095240:CDS
AGTGTTAATAAGGAATCTAG+GGG 0.667965 1_2:+79042054 Msa0095240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTAGAATCAAAAAAA+GGG - chr1_2:79041470-79041489 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG + chr1_2:79041594-79041613 Msa0095240:intron 15.0%
!! TATTATTAAATTCATAGCAA+TGG - chr1_2:79041688-79041707 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG + chr1_2:79041844-79041863 Msa0095240:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG + chr1_2:79042347-79042366 Msa0095240:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG + chr1_2:79042348-79042367 Msa0095240:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG - chr1_2:79042643-79042662 None:intergenic 15.0%
!! AATAACTAGAATCAAAAAAA+GGG - chr1_2:79041470-79041489 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG + chr1_2:79041594-79041613 Msa0095240:intron 15.0%
!! TATTATTAAATTCATAGCAA+TGG - chr1_2:79041688-79041707 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG + chr1_2:79041844-79041863 Msa0095240:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG + chr1_2:79042347-79042366 Msa0095240:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG + chr1_2:79042348-79042367 Msa0095240:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG - chr1_2:79042643-79042662 None:intergenic 15.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG - chr1_2:79041318-79041337 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG + chr1_2:79041317-79041336 Msa0095240:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG - chr1_2:79041469-79041488 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG - chr1_2:79041471-79041490 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG + chr1_2:79041469-79041488 Msa0095240:intron 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG - chr1_2:79041524-79041543 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG + chr1_2:79041597-79041616 Msa0095240:intron 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG + chr1_2:79041603-79041622 Msa0095240:intron 20.0%
!! TTCTATTACAATTCCATTTA+TGG - chr1_2:79041719-79041738 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG + chr1_2:79042008-79042027 Msa0095240:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG + chr1_2:79042044-79042063 Msa0095240:CDS 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG + chr1_2:79042178-79042197 Msa0095240:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG - chr1_2:79042353-79042372 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG + chr1_2:79042356-79042375 Msa0095240:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG - chr1_2:79042563-79042582 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG - chr1_2:79042700-79042719 None:intergenic 20.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG - chr1_2:79041318-79041337 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG + chr1_2:79041317-79041336 Msa0095240:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG - chr1_2:79041469-79041488 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG - chr1_2:79041471-79041490 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG + chr1_2:79041469-79041488 Msa0095240:intron 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG - chr1_2:79041524-79041543 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG + chr1_2:79041597-79041616 Msa0095240:intron 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG + chr1_2:79041603-79041622 Msa0095240:intron 20.0%
!! TTCTATTACAATTCCATTTA+TGG - chr1_2:79041719-79041738 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG + chr1_2:79042008-79042027 Msa0095240:intron 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG + chr1_2:79042044-79042063 Msa0095240:CDS 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG + chr1_2:79042178-79042197 Msa0095240:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG - chr1_2:79042353-79042372 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG + chr1_2:79042356-79042375 Msa0095240:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG - chr1_2:79042563-79042582 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG - chr1_2:79042700-79042719 None:intergenic 20.0%
! AAAAAAAAAACGAACGAAGA+GGG - chr1_2:79041541-79041560 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG - chr1_2:79041542-79041561 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG + chr1_2:79041723-79041742 Msa0095240:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG + chr1_2:79041724-79041743 Msa0095240:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG + chr1_2:79041962-79041981 Msa0095240:intron 25.0%
! TTATAGAATTTACCTCCTAA+GGG - chr1_2:79042219-79042238 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG - chr1_2:79042220-79042239 None:intergenic 25.0%
! AAAAAAAAAACGAACGAAGA+GGG - chr1_2:79041541-79041560 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG - chr1_2:79041542-79041561 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG + chr1_2:79041723-79041742 Msa0095240:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG + chr1_2:79041724-79041743 Msa0095240:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG + chr1_2:79041962-79041981 Msa0095240:intron 25.0%
! TTATAGAATTTACCTCCTAA+GGG - chr1_2:79042219-79042238 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG - chr1_2:79042220-79042239 None:intergenic 25.0%
TTACAAGAAAAAAACGAAGG+AGG + chr1_2:79041320-79041339 Msa0095240:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG + chr1_2:79041358-79041377 Msa0095240:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG + chr1_2:79041430-79041449 Msa0095240:intron 30.0%
! TTTGATTCTAGTTATTGGCA+CGG + chr1_2:79041474-79041493 Msa0095240:intron 30.0%
AAAAACTCCTAATTTCACTG+AGG - chr1_2:79041629-79041648 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG + chr1_2:79041703-79041722 Msa0095240:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG + chr1_2:79041727-79041746 Msa0095240:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG + chr1_2:79041965-79041984 Msa0095240:intron 30.0%
TATTCGTATATCTTTACCCT+TGG - chr1_2:79041998-79042017 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG + chr1_2:79042052-79042071 Msa0095240:CDS 30.0%
GAGTGTTAATAAGGAATCTA+GGG + chr1_2:79042053-79042072 Msa0095240:CDS 30.0%
AGTGTTAATAAGGAATCTAG+GGG + chr1_2:79042054-79042073 Msa0095240:CDS 30.0%
ATCGTATGTTTGCAACAAAA+GGG - chr1_2:79042150-79042169 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG - chr1_2:79042151-79042170 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG + chr1_2:79042378-79042397 Msa0095240:CDS 30.0%
! AATCTAAGCAATCTTTTCGT+AGG + chr1_2:79042425-79042444 Msa0095240:CDS 30.0%
!! TATCGACTTATTAGTCAACA+AGG + chr1_2:79042505-79042524 Msa0095240:CDS 30.0%
AAAGGTGACGAATTAACAAA+AGG - chr1_2:79042625-79042644 None:intergenic 30.0%
TTACAAGAAAAAAACGAAGG+AGG + chr1_2:79041320-79041339 Msa0095240:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG + chr1_2:79041358-79041377 Msa0095240:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG + chr1_2:79041430-79041449 Msa0095240:intron 30.0%
! TTTGATTCTAGTTATTGGCA+CGG + chr1_2:79041474-79041493 Msa0095240:intron 30.0%
AAAAACTCCTAATTTCACTG+AGG - chr1_2:79041629-79041648 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG + chr1_2:79041703-79041722 Msa0095240:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG + chr1_2:79041727-79041746 Msa0095240:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG + chr1_2:79041965-79041984 Msa0095240:intron 30.0%
TATTCGTATATCTTTACCCT+TGG - chr1_2:79041998-79042017 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG + chr1_2:79042052-79042071 Msa0095240:CDS 30.0%
GAGTGTTAATAAGGAATCTA+GGG + chr1_2:79042053-79042072 Msa0095240:CDS 30.0%
AGTGTTAATAAGGAATCTAG+GGG + chr1_2:79042054-79042073 Msa0095240:CDS 30.0%
ATCGTATGTTTGCAACAAAA+GGG - chr1_2:79042150-79042169 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG - chr1_2:79042151-79042170 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG + chr1_2:79042378-79042397 Msa0095240:CDS 30.0%
! AATCTAAGCAATCTTTTCGT+AGG + chr1_2:79042425-79042444 Msa0095240:CDS 30.0%
!! TATCGACTTATTAGTCAACA+AGG + chr1_2:79042505-79042524 Msa0095240:CDS 30.0%
AAAGGTGACGAATTAACAAA+AGG - chr1_2:79042625-79042644 None:intergenic 30.0%
! TGAAATTAGGAGTTTTTCCC+AGG + chr1_2:79041632-79041651 Msa0095240:intron 35.0%
CTTCAATTCCATTGAAACCT+GGG - chr1_2:79041652-79041671 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG - chr1_2:79041653-79041672 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG + chr1_2:79041728-79041747 Msa0095240:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG - chr1_2:79041923-79041942 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG + chr1_2:79041972-79041991 Msa0095240:intron 35.0%
TTTCTCAATTCCAATCGACT+AGG - chr1_2:79042120-79042139 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG + chr1_2:79042362-79042381 Msa0095240:intron 35.0%
! TGAAATTAGGAGTTTTTCCC+AGG + chr1_2:79041632-79041651 Msa0095240:intron 35.0%
CTTCAATTCCATTGAAACCT+GGG - chr1_2:79041652-79041671 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG - chr1_2:79041653-79041672 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG + chr1_2:79041728-79041747 Msa0095240:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG - chr1_2:79041923-79041942 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG + chr1_2:79041972-79041991 Msa0095240:intron 35.0%
TTTCTCAATTCCAATCGACT+AGG - chr1_2:79042120-79042139 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG + chr1_2:79042362-79042381 Msa0095240:intron 35.0%
GATTTGGCCTCAGTGAAATT+AGG + chr1_2:79041619-79041638 Msa0095240:intron 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG + chr1_2:79041641-79041660 Msa0095240:intron 40.0%
ACACAATACACCTAGTCGAT+TGG + chr1_2:79042107-79042126 Msa0095240:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG + chr1_2:79042201-79042220 Msa0095240:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG - chr1_2:79042398-79042417 None:intergenic 40.0%
GATTTGGCCTCAGTGAAATT+AGG + chr1_2:79041619-79041638 Msa0095240:intron 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG + chr1_2:79041641-79041660 Msa0095240:intron 40.0%
ACACAATACACCTAGTCGAT+TGG + chr1_2:79042107-79042126 Msa0095240:intron 40.0%
ATTGTTTGTGTGTCACCCTT+AGG + chr1_2:79042201-79042220 Msa0095240:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG - chr1_2:79042398-79042417 None:intergenic 40.0%
! AACCATAGAGTACTTGCCAC+TGG - chr1_2:79041386-79041405 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG - chr1_2:79041452-79041471 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG + chr1_2:79041479-79041498 Msa0095240:intron 45.0%
TCTAGTTATTGGCACGGCAA+GGG + chr1_2:79041480-79041499 Msa0095240:intron 45.0%
AATCAATTCGATCCCCCGAT+TGG - chr1_2:79042465-79042484 None:intergenic 45.0%
! AACCATAGAGTACTTGCCAC+TGG - chr1_2:79041386-79041405 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG - chr1_2:79041452-79041471 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG + chr1_2:79041479-79041498 Msa0095240:intron 45.0%
TCTAGTTATTGGCACGGCAA+GGG + chr1_2:79041480-79041499 Msa0095240:intron 45.0%
AATCAATTCGATCCCCCGAT+TGG - chr1_2:79042465-79042484 None:intergenic 45.0%
!!! ATATTTATATTTGTTATATA+AGG - chr1_2:79042292-79042311 None:intergenic 5.0%
!!! ATATTTATATTTGTTATATA+AGG - chr1_2:79042292-79042311 None:intergenic 5.0%
ATATCTCTCTGTGGCACCAG+TGG + chr1_2:79041367-79041386 Msa0095240:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG + chr1_2:79041381-79041400 Msa0095240:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG + chr1_2:79041388-79041407 Msa0095240:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG - chr1_2:79041451-79041470 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG + chr1_2:79041481-79041500 Msa0095240:intron 50.0%
CAAAGGAGGTTCATGGCCAA+GGG + chr1_2:79041979-79041998 Msa0095240:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG + chr1_2:79042204-79042223 Msa0095240:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG + chr1_2:79042447-79042466 Msa0095240:CDS 50.0%
AGTTTGTCCCCGATCCAATC+GGG + chr1_2:79042448-79042467 Msa0095240:CDS 50.0%
ATTCGATCCCCCGATTGGAT+CGG - chr1_2:79042460-79042479 None:intergenic 50.0%
ATATCTCTCTGTGGCACCAG+TGG + chr1_2:79041367-79041386 Msa0095240:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG + chr1_2:79041381-79041400 Msa0095240:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG + chr1_2:79041388-79041407 Msa0095240:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG - chr1_2:79041451-79041470 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG + chr1_2:79041481-79041500 Msa0095240:intron 50.0%
CAAAGGAGGTTCATGGCCAA+GGG + chr1_2:79041979-79041998 Msa0095240:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG + chr1_2:79042204-79042223 Msa0095240:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG + chr1_2:79042447-79042466 Msa0095240:CDS 50.0%
AGTTTGTCCCCGATCCAATC+GGG + chr1_2:79042448-79042467 Msa0095240:CDS 50.0%
ATTCGATCCCCCGATTGGAT+CGG - chr1_2:79042460-79042479 None:intergenic 50.0%
! CTATGGTTCGCGGTTCTAGC+AGG + chr1_2:79041398-79041417 Msa0095240:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG - chr1_2:79041981-79042000 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG + chr1_2:79041978-79041997 Msa0095240:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG + chr1_2:79042449-79042468 Msa0095240:CDS 55.0%
TTTGTCCCCGATCCAATCGG+GGG + chr1_2:79042450-79042469 Msa0095240:CDS 55.0%
TTCGATCCCCCGATTGGATC+GGG - chr1_2:79042459-79042478 None:intergenic 55.0%
! CTATGGTTCGCGGTTCTAGC+AGG + chr1_2:79041398-79041417 Msa0095240:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG - chr1_2:79041981-79042000 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG + chr1_2:79041978-79041997 Msa0095240:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG + chr1_2:79042449-79042468 Msa0095240:CDS 55.0%
TTTGTCCCCGATCCAATCGG+GGG + chr1_2:79042450-79042469 Msa0095240:CDS 55.0%
TTCGATCCCCCGATTGGATC+GGG - chr1_2:79042459-79042478 None:intergenic 55.0%
TCGATCCCCCGATTGGATCG+GGG - chr1_2:79042458-79042477 None:intergenic 60.0%
TCGATCCCCCGATTGGATCG+GGG - chr1_2:79042458-79042477 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 79041308 79042729 79041308 ID=Msa0095240;Name=Msa0095240
chr1_2 mRNA 79041308 79042729 79041308 ID=Msa0095240-mRNA-1;Parent=Msa0095240;Name=Msa0095240-mRNA-1;_AED=0.31;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|177
chr1_2 exon 79041308 79041440 79041308 ID=Msa0095240-mRNA-1:exon:28073;Parent=Msa0095240-mRNA-1
chr1_2 exon 79042041 79042075 79042041 ID=Msa0095240-mRNA-1:exon:28074;Parent=Msa0095240-mRNA-1
chr1_2 exon 79042364 79042729 79042364 ID=Msa0095240-mRNA-1:exon:28075;Parent=Msa0095240-mRNA-1
chr1_2 CDS 79041308 79041440 79041308 ID=Msa0095240-mRNA-1:cds;Parent=Msa0095240-mRNA-1
chr1_2 CDS 79042041 79042075 79042041 ID=Msa0095240-mRNA-1:cds;Parent=Msa0095240-mRNA-1
chr1_2 CDS 79042364 79042729 79042364 ID=Msa0095240-mRNA-1:cds;Parent=Msa0095240-mRNA-1
Gene Sequence

>Msa0095240

ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTACTTTATCGACTTATTAGTCAACAAGGAAAAATATTATCTAGACGCGTGAATAGATCAACCTTAAAACAACAACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTGTTAATTCGTCACCTTTTGTGAATAATGAAAAAAAAAAATATGAAAAAAGCGAGTCGATCACTAGAACTCCTACTACTGTTCTAAAAAAAAACAAAAAATAG

Protein sequence

>Msa0095240

MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINLVIKRVLIRNLGKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSGDRIDYKNMSLLYRLISQQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVNSSPFVNNEKKKYEKSESITRTPTTVLKKNKK*