AlfalfaGEDB | Msa0123170

M. sativa cultivar zhongmu-4 / Msa0123170

KEGG: -
GO: -
PFAM: PF07498.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123170	sp\|Q8L4E7\|BP73_ORYSJ	41.349	341	158	12	63	368	39	372	2.77e-51	178

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123170	A0A072VL21	93.801	371	22	1	1	370	1	371	0.0	699

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0123170	0.826455	2.686951e-54	-8.615850e-47
Msa0001460	Msa0123170	0.834699	2.577700e-56	-8.615850e-47
Msa0001950	Msa0123170	0.827584	1.443286e-54	-8.615850e-47
Msa0003470	Msa0123170	0.817577	3.068341e-52	-8.615850e-47
Msa0004610	Msa0123170	0.802027	6.815116e-49	-8.615850e-47
Msa0006700	Msa0123170	0.810319	1.222791e-50	-8.615850e-47
Msa0008850	Msa0123170	0.860393	2.131567e-63	-8.615850e-47
Msa0012460	Msa0123170	0.826713	2.331965e-54	-8.615850e-47
Msa0017120	Msa0123170	0.866842	2.121483e-65	-8.615850e-47
Msa0017940	Msa0123170	0.848968	4.369087e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123170	MtrunA17_Chr1g0183791	93.801	371	22	1	1	370	1	371	0.0	699

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123170	AT1G06190.1	36.427	431	173	13	1	367	3	396	1.28e-46	164
Msa0123170	AT1G06190.5	36.215	428	170	14	4	367	11	399	2.39e-45	160
Msa0123170	AT1G06190.2	42.391	276	104	9	1	253	3	246	8.53e-37	135
Msa0123170	AT1G06190.3	36.223	323	118	8	104	367	1	294	6.33e-32	122
Msa0123170	AT1G06190.4	36.223	323	118	8	104	367	1	294	6.33e-32	122
Msa0123170	AT2G31150.1	40.526	190	77	8	69	252	28	187	1.02e-17	83.2

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Find 103 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAGGACTAAAGTA+TGG	0.407218	1_3:+50079610	Msa0123170:CDS
AAACATCTAGTTAAAAGCAG+AGG	0.628546	1_3:-50080649	None:intergenic
AAACCACCAAGGCAAAGACA+CGG	0.700646	1_3:-50080763	None:intergenic
AAAGTAACCAATATAATGGA+AGG	0.561546	1_3:+50080067	Msa0123170:CDS
AACCTATAATAATGAGGGTG+TGG	0.526342	1_3:+50080410	Msa0123170:CDS
AAGAAACACTCTGTTGAGCA+AGG	0.591435	1_3:+50079988	Msa0123170:CDS
AAGAAAGTTGAAGCACGCCG+AGG	0.654479	1_3:+50079919	Msa0123170:CDS
AAGGAAAAGTAATACTAGAA+CGG	0.591425	1_3:+50080593	Msa0123170:three_prime_UTR
AAGTGTTTCCCATGCTCACG+TGG	0.592511	1_3:+50079520	Msa0123170:CDS
AATAGGCATGGGTCATCAAG+AGG	0.632902	1_3:+50079694	Msa0123170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAATGATGTTATCTGAGT+GGG	+	chr1_3:50077267-50077286	Msa0123170:intron	30.0%
ATATGTCAAATATTGGTCAC+AGG	-	chr1_3:50077310-50077329	None:intergenic	30.0%
CATCTTAAAATTCTACACCA+AGG	-	chr1_3:50077338-50077357	None:intergenic	30.0%
AAAACCTAAACCAGAGAAAA+TGG	-	chr1_3:50077391-50077410	None:intergenic	30.0%
TGTTAAAAGTCAGAACATTG+TGG	+	chr1_3:50077479-50077498	Msa0123170:intron	30.0%
TTATTAAAAATGGGCCCTTA+TGG	+	chr1_3:50077612-50077631	Msa0123170:intron	30.0%
TAAAAGTAAGTTTGTATGGG+AGG	+	chr1_3:50077712-50077731	Msa0123170:intron	30.0%
GACAAACTAGTACTAATATC+GGG	+	chr1_3:50077915-50077934	Msa0123170:intron	30.0%
TGGTAAAATAGAATGCACTT+GGG	-	chr1_3:50078204-50078223	None:intergenic	30.0%
TTGGTAAAATAGAATGCACT+TGG	-	chr1_3:50078205-50078224	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	50076928	50080836	50076928	ID=Msa0123170;Name=Msa0123170
chr1_3	mRNA	50076928	50080836	50076928	ID=Msa0123170-mRNA-1;Parent=Msa0123170;Name=Msa0123170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=44\|1\|1\|1\|1\|1\|2\|264\|370
chr1_3	exon	50076928	50077011	50076928	ID=Msa0123170-mRNA-1:exon:15252;Parent=Msa0123170-mRNA-1
chr1_3	exon	50079500	50080836	50079500	ID=Msa0123170-mRNA-1:exon:15253;Parent=Msa0123170-mRNA-1
chr1_3	five_prime_UTR	50076928	50076971	50076928	ID=Msa0123170-mRNA-1:five_prime_utr;Parent=Msa0123170-mRNA-1
chr1_3	CDS	50076972	50077011	50076972	ID=Msa0123170-mRNA-1:cds;Parent=Msa0123170-mRNA-1
chr1_3	CDS	50079500	50080572	50079500	ID=Msa0123170-mRNA-1:cds;Parent=Msa0123170-mRNA-1
chr1_3	three_prime_UTR	50080573	50080836	50080573	ID=Msa0123170-mRNA-1:three_prime_utr;Parent=Msa0123170-mRNA-1

Gene Sequence

>Msa0123170

ATGTCGCAAACTGTTCATCTCATCGTCGCCAACAACGTCGGTTGTGGAATGCCAGAAGACAAGTGTTTCCCATGCTCACGTGGTTTTGGAAGAACAACTGTTGTATATTCATGCACTTCTCTAGGTCGTCGTAGAATTCATTCTCATGTCAAAATTGGAGGACTAAAGTATGGTTCAACGGCTGCATCTTTTGCATGTGAAGCAAGGAGGAACTCAGATTTCTCAAGGCAAAACAATAGGCATGGGTCATCAAGAGGCAGAAATAGGAACGATGATGGGAGAGATATCTTTGAGAATTTTGAAGAAGATATGTTATCTTCAAAAAATGGACCATTAGTATCGCATAATTCAGGAAAATTCCAGGCCACTTCATCCCCTGGCCCCAGAGAGAAGGAGATTGTTGAATTATTTAGGAAAGTTCAAGCTCGGTTGCGTGAGAGGACCACTGTCAAAGAAGAAAAGAAAGTTGAAGCACGCCGAGGGCATGTTAAAGAGCAAAGTGCTGTAGATTCCCTCCTCAACCTATTGAAGAAACACTCTGTTGAGCAAGGAAAGAGAAGTAATGGAGAGGACGATGGAAAAGACCTTAACTCTGACCAGTTGCAAGAAAGTAACCAATATAATGGAAGGCAAAACTCTAAATTTTCTGATTCAGGTGCTCCAAAGGGCGAGTCTCGAGAAGCCAACATTGCTTCTTCGGCTCGGCCTCGGTCAGTTTTCCAAAGAAAGTCTCCTGTTCCACGTGTTAGGTACCAGCCTCTCTCTAATAACTTGGCTGATACTAATGCAGTACCAATAGATACTGAAGATAATGAGAACATTCAGGATCAATTAGATTCGAAACTTGACGACGAGCCAGAACCTAAACTTGTGTCTGACATTGATCTTGATACAAAGGATGAGACGTCCTTCCCTGAATTTTCTGATGATGATTCTCATGACTCCGAACAAACCTATAATAATGAGGGTGTGGATGAGCATGTAGTGGTTCAAAATGAGGATTTGAATGCACTGAAGATGTCTGAATTAAGGGCACTTGCAAAGTCTCGTGGCGTGAAAGGGTTCTCCAAAATGAAGAAGGGAGATCTCGTGGAGCTACTAACTGAGAACTGA

Protein sequence

>Msa0123170

MSQTVHLIVANNVGCGMPEDKCFPCSRGFGRTTVVYSCTSLGRRRIHSHVKIGGLKYGSTAASFACEARRNSDFSRQNNRHGSSRGRNRNDDGRDIFENFEEDMLSSKNGPLVSHNSGKFQATSSPGPREKEIVELFRKVQARLRERTTVKEEKKVEARRGHVKEQSAVDSLLNLLKKHSVEQGKRSNGEDDGKDLNSDQLQESNQYNGRQNSKFSDSGAPKGESREANIASSARPRSVFQRKSPVPRVRYQPLSNNLADTNAVPIDTEDNENIQDQLDSKLDDEPEPKLVSDIDLDTKDETSFPEFSDDDSHDSEQTYNNEGVDEHVVVQNEDLNALKMSELRALAKSRGVKGFSKMKKGDLVELLTEN*