AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433890 MtrunA17_Chr3g0140041 97.718 482 8 1 1 482 1 479 0.0 969
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433890 AT4G32770.1 67.828 488 151 3 1 482 1 488 0.0 698

Find 157 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCCAATCACACAATTTC+TGG 0.153393 3_2:-86518330 Msa0433890:CDS
GGGAGGTGTAGGAGAGTAAA+TGG 0.240767 3_2:+86518675 None:intergenic
CGTTCCCGAGAAAATGGTTT+TGG 0.250397 3_2:-86516252 Msa0433890:CDS
ACTTTGGAATTGGCACAATA+TGG 0.276822 3_2:-86518418 Msa0433890:CDS
AAGTAGCTACTTGGGGTTAT+TGG 0.292450 3_2:-86515140 Msa0433890:CDS
GACCTAGGTTTACTGGTGTT+GGG 0.295673 3_2:-86518396 Msa0433890:CDS
CCTGTTCTTAGCCGTGCTAT+TGG 0.308781 3_2:-86514495 Msa0433890:CDS
GTGGAGCGTTCCCGAGAAAA+TGG 0.320779 3_2:-86516258 Msa0433890:CDS
CAATATGGACCTAGGTTTAC+TGG 0.328735 3_2:-86518403 Msa0433890:CDS
TCATGGTAAGTACAAACTTT+TGG 0.336719 3_2:-86514358 Msa0433890:three_prime_UTR
GTGAAAATGGCAGATAATAT+TGG 0.340328 3_2:-86514598 Msa0433890:intron
TTAATGTATAAGAATGTTCA+TGG 0.341375 3_2:-86514252 Msa0433890:three_prime_UTR
GTGTTTAGGTATCACTTTGA+TGG 0.344307 3_2:-86518556 Msa0433890:intron
TTCCAAAGTTGTCAATTCCT+TGG 0.350325 3_2:+86518432 None:intergenic
TTCCCCAGAAATTGTGTGAT+TGG 0.351635 3_2:+86518326 None:intergenic
GTCACTCCCCTTTGGAATCA+AGG 0.354231 3_2:-86517169 Msa0433890:CDS
CAAGGTTTCATTTGCGATGA+TGG 0.355793 3_2:-86517151 Msa0433890:CDS
GGAATTGACAACTTTGGAAT+TGG 0.357544 3_2:-86518428 Msa0433890:CDS
TGGTGGATTGAGACAAATTC+CGG 0.358362 3_2:-86515852 Msa0433890:CDS
TGAGAGCAGTTTGATTGCTT+TGG 0.360147 3_2:+86519071 None:intergenic
TCCCCAGAAATTGTGTGATT+GGG 0.365123 3_2:+86518327 None:intergenic
TAGCCGTGCTATTGGATTAC+CGG 0.369394 3_2:-86514487 Msa0433890:CDS
GGTGTTGGGGCACAAATTCT+TGG 0.371589 3_2:-86518382 Msa0433890:CDS
CATCTTATTCAGAAAAGAAC+TGG 0.385152 3_2:-86516282 Msa0433890:CDS
TCCAAAGTTGTCAATTCCTT+GGG 0.386517 3_2:+86518433 None:intergenic
TCTCTTGGTACAGAGTTTCA+TGG 0.392959 3_2:-86514375 Msa0433890:three_prime_UTR
GGACCTAGGTTTACTGGTGT+TGG 0.399070 3_2:-86518397 Msa0433890:CDS
GCTTGTAAAGATACATGCTT+TGG 0.401985 3_2:-86514755 Msa0433890:CDS
TATAGTACACGTCCTGTATA+TGG 0.403430 3_2:-86517005 Msa0433890:CDS
TGTAGGAGAGTAAATGGGTT+TGG 0.412743 3_2:+86518681 None:intergenic
TACACGTCCTGTATATGGTT+GGG 0.419259 3_2:-86517000 Msa0433890:CDS
GAATACTAAAATTAAAATTG+TGG 0.423212 3_2:-86514733 Msa0433890:CDS
TATATGGTTGGGGTGATGTT+GGG 0.431491 3_2:-86516989 Msa0433890:CDS
AGGTAGGAATGAACTGATGT+TGG 0.434714 3_2:-86518189 Msa0433890:CDS
GTATATGGTTGGGGTGATGT+TGG 0.436667 3_2:-86516990 Msa0433890:CDS
ATTGTTAACGTGTGTTTAGT+TGG 0.440803 3_2:-86514228 Msa0433890:three_prime_UTR
AATACTAAAATTAAAATTGT+GGG 0.443751 3_2:-86514732 Msa0433890:CDS
TTAGGAGGAACCTCCTTGTT+CGG 0.446056 3_2:+86518131 None:intergenic
TATCTTTACAAGCTTGAGAA+AGG 0.455604 3_2:+86514765 None:intergenic
TCCCAAGGAATTGACAACTT+TGG 0.457159 3_2:-86518434 Msa0433890:CDS
TCCCCAATCACACAATTTCT+GGG 0.459146 3_2:-86518329 Msa0433890:CDS
ATGGCCGGTGGCCTGTCAAC+AGG 0.465344 3_2:-86516897 Msa0433890:intron
GAAAGGCCAGCTTCTGATGT+TGG 0.465394 3_2:+86514782 None:intergenic
ATTCAATAGCTTGGTTTCCA+TGG 0.468249 3_2:+86518852 None:intergenic
GCGCAGATTGGAATTCACTA+TGG 0.470754 3_2:-86515210 Msa0433890:intron
GGATTACCGGTAGATGTAGA+TGG 0.471198 3_2:-86514474 Msa0433890:CDS
GAAGAAGAAACAGAGGAGGA+AGG 0.472031 3_2:+86518808 None:intergenic
ACATCACCCCAACCATATAC+AGG 0.478564 3_2:+86516993 None:intergenic
CCAATAGCACGGCTAAGAAC+AGG 0.479300 3_2:+86514495 None:intergenic
CATGGAATGGTGTTGTAAGC+TGG 0.479963 3_2:-86515164 Msa0433890:CDS
AAGAAAAGAACGTGTGATGT+TGG 0.482895 3_2:-86518970 Msa0433890:five_prime_UTR
AAAGAACGGTTGTGATGAAA+GGG 0.483907 3_2:+86518757 None:intergenic
TAAGCTGGGAAGTAGCTACT+TGG 0.490303 3_2:-86515149 Msa0433890:CDS
TTTCCTCTGTTTAAACCACC+TGG 0.496378 3_2:-86514438 Msa0433890:CDS
AAGCTGGGAAGTAGCTACTT+GGG 0.500867 3_2:-86515148 Msa0433890:CDS
AGATTGAGATTGTTGTTGTT+CGG 0.504947 3_2:+86518705 None:intergenic
GACATGGCAGCTCTAGAAGT+TGG 0.506366 3_2:-86514564 Msa0433890:CDS
GGTGGATTGAGACAAATTCC+GGG 0.506870 3_2:-86515851 Msa0433890:CDS
CACGCAAATTCTTCGAGGGT+TGG 0.507645 3_2:-86518528 Msa0433890:CDS
GACATTTGAAAATGCTGCAT+TGG 0.507859 3_2:-86515819 Msa0433890:intron
GGAGGTGTAGGAGAGTAAAT+GGG 0.508025 3_2:+86518676 None:intergenic
CGATGATTAGTTTGAAAGAA+CGG 0.508053 3_2:+86518743 None:intergenic
TCCATGTAAAACTTCTCTCT+TGG 0.509736 3_2:-86514390 Msa0433890:three_prime_UTR
GAGGGCCATGGTTTAACACT+TGG 0.509944 3_2:-86514539 Msa0433890:CDS
TAACGTGTGTTTAGTTGGAG+GGG 0.510042 3_2:-86514223 None:intergenic
AATGAAACCTTGATTCCAAA+GGG 0.511006 3_2:+86517162 None:intergenic
GGAAAGTGAATAAGAGAAGG+AGG 0.512849 3_2:+86518829 None:intergenic
TCAAATGTCTCAGTTAGTCC+CGG 0.515148 3_2:+86515833 None:intergenic
AGAAGGAGGATTCAATAGCT+TGG 0.516141 3_2:+86518843 None:intergenic
ACCTAGGTTTACTGGTGTTG+GGG 0.516777 3_2:-86518395 Msa0433890:CDS
AAGATAGTTACCCGCTATGA+GGG 0.516871 3_2:+86518635 None:intergenic
GAAAGAACGGTTGTGATGAA+AGG 0.517625 3_2:+86518756 None:intergenic
AACTGCACGCAAATTCTTCG+AGG 0.519195 3_2:-86518533 Msa0433890:CDS
AACAGTAAAGACTGCTCGCT+GGG 0.520354 3_2:-86517030 Msa0433890:CDS
CACAGAAGTCAACTGCTGGC+TGG 0.521033 3_2:-86516962 Msa0433890:CDS
GGGGTGCGAAGTTGACGATT+GGG 0.522940 3_2:+86518655 None:intergenic
AAAGATAGTTACCCGCTATG+AGG 0.527165 3_2:+86518634 None:intergenic
TTAACGTGTGTTTAGTTGGA+GGG 0.528753 3_2:-86514224 Msa0433890:three_prime_UTR
GAACAAGGAGGTTCCTCCTA+AGG 0.529562 3_2:-86518129 Msa0433890:intron
AGGGGTGCGAAGTTGACGAT+TGG 0.530318 3_2:+86518654 None:intergenic
TACATAAAACCTACCTTAGG+AGG 0.531597 3_2:+86518116 None:intergenic
CGTGCTCCAACATCAGAAGC+TGG 0.533200 3_2:-86514788 Msa0433890:CDS
GAAATTGCACTTACAGCCGC+TGG 0.534354 3_2:-86515872 Msa0433890:CDS
TTTAATGATAAAGTGTTCGA+AGG 0.534535 3_2:-86517199 Msa0433890:CDS
TGTGTGATTGGGGAGTATAT+TGG 0.535186 3_2:+86518338 None:intergenic
ACAGAGGAAACAGATTATAG+AGG 0.536656 3_2:+86514451 None:intergenic
AACTTCGCACCCCTCATAGC+GGG 0.537198 3_2:-86518645 Msa0433890:intron
AAACAGTAAAGACTGCTCGC+TGG 0.537456 3_2:-86517031 Msa0433890:CDS
GAAGGAAAGTGAATAAGAGA+AGG 0.541467 3_2:+86518826 None:intergenic
ACACGTCCTGTATATGGTTG+GGG 0.544633 3_2:-86516999 Msa0433890:CDS
GGTAGGAATGAACTGATGTT+GGG 0.544911 3_2:-86518188 Msa0433890:CDS
TATGAATTTGTGCCATGGAA+TGG 0.547126 3_2:-86515177 Msa0433890:CDS
CAAGAATCATCATTCATCCA+TGG 0.547722 3_2:-86518869 Msa0433890:exon
GACAGCACATACCTGTTGAC+AGG 0.550591 3_2:+86516886 None:intergenic
CATTGGCAAATATGCATGGC+CGG 0.551128 3_2:-86516912 Msa0433890:CDS
TAGAAGTTGGAGGAGGGCCA+TGG 0.552177 3_2:-86514551 Msa0433890:CDS
GAATCTCAGGTTGGATAGAG+TGG 0.554904 3_2:-86516336 Msa0433890:intron
AGTTGACGATTGGGAGGTGT+AGG 0.555006 3_2:+86518664 None:intergenic
GTTAACGTGTGTTTAGTTGG+AGG 0.556405 3_2:-86514225 Msa0433890:three_prime_UTR
AGAAGAAGAAGAAACAGAGG+AGG 0.556467 3_2:+86518804 None:intergenic
ATATGACGGCAGCAAGGGAA+AGG 0.557692 3_2:-86514702 Msa0433890:intron
CCCCAGAAATTGTGTGATTG+GGG 0.559399 3_2:+86518328 None:intergenic
AGAAGATATGACGGCAGCAA+GGG 0.559547 3_2:-86514707 Msa0433890:CDS
AAATGAAACCTTGATTCCAA+AGG 0.560360 3_2:+86517161 None:intergenic
GTCAATTCCTTGGGAAACGC+AGG 0.564340 3_2:+86518442 None:intergenic
CCATGGTTTAACACTTGGAA+GGG 0.565373 3_2:-86514534 Msa0433890:CDS
GCCATGCATATTTGCCAATG+TGG 0.566045 3_2:+86516915 None:intergenic
CCCTTCCAAGTGTTAAACCA+TGG 0.566770 3_2:+86514534 None:intergenic
GCCATGGTTTAACACTTGGA+AGG 0.567755 3_2:-86514535 Msa0433890:CDS
GTTTCATTTGCGATGATGGA+AGG 0.568224 3_2:-86517147 Msa0433890:intron
TAGAGGCCATCTACATCTAC+CGG 0.569072 3_2:+86514468 None:intergenic
GCAGCTCTAGAAGTTGGAGG+AGG 0.570437 3_2:-86514558 Msa0433890:CDS
CAGCTTACAACACCATTCCA+TGG 0.573304 3_2:+86515165 None:intergenic
ACAACAACATACTACAAGCC+AGG 0.575692 3_2:+86514420 None:intergenic
GGATAGAGTGGGATGGCGAG+AGG 0.577129 3_2:-86516324 Msa0433890:CDS
ATGGAATGGTGTTGTAAGCT+GGG 0.579542 3_2:-86515163 Msa0433890:CDS
GAAGCAACAACAGAGGATCA+AGG 0.583207 3_2:-86514821 Msa0433890:CDS
TGAGAATCCTGCGTTTCCCA+AGG 0.588380 3_2:-86518449 Msa0433890:CDS
GTACACGTCCTGTATATGGT+TGG 0.589209 3_2:-86517001 Msa0433890:CDS
AATTGGCACAATATGGACCT+AGG 0.592552 3_2:-86518411 Msa0433890:CDS
ATGGCAGCTCTAGAAGTTGG+AGG 0.592674 3_2:-86514561 Msa0433890:CDS
AAATTCGAAACCTCCGAACA+AGG 0.593736 3_2:-86518144 Msa0433890:CDS
CATACCTGTTGACAGGCCAC+CGG 0.595777 3_2:+86516893 None:intergenic
TGCAGACAACGGAAATTATG+TGG 0.596580 3_2:-86515109 Msa0433890:intron
AATCTCAGGTTGGATAGAGT+GGG 0.597137 3_2:-86516335 Msa0433890:intron
ATCTTATTCAGAAAAGAACT+GGG 0.601044 3_2:-86516281 Msa0433890:CDS
ATTGCACTTACAGCCGCTGG+TGG 0.602119 3_2:-86515869 Msa0433890:CDS
GGAGGAACCTCCTTGTTCGG+AGG 0.606309 3_2:+86518134 None:intergenic
TCTACACAGAAGTCAACTGC+TGG 0.606515 3_2:-86516966 Msa0433890:CDS
TTGTGGGAAAGAAGATATGA+CGG 0.606738 3_2:-86514716 Msa0433890:CDS
CAGATTGGAATTCACTATGG+TGG 0.609821 3_2:-86515207 Msa0433890:CDS
TGGTTTATGTCTGCAGACAA+CGG 0.617480 3_2:-86515120 Msa0433890:CDS
AAGAAGATATGACGGCAGCA+AGG 0.617497 3_2:-86514708 Msa0433890:CDS
ACTGCACGCAAATTCTTCGA+GGG 0.619317 3_2:-86518532 Msa0433890:CDS
TATTCAGAAAAGAACTGGGG+TGG 0.619500 3_2:-86516277 Msa0433890:CDS
ACCACATTGGCAAATATGCA+TGG 0.624184 3_2:-86516916 Msa0433890:CDS
AGCTGGGAAGTAGCTACTTG+GGG 0.631889 3_2:-86515147 Msa0433890:CDS
CCCCAATCACACAATTTCTG+GGG 0.639513 3_2:-86518328 Msa0433890:CDS
CAGCTCTAGAAGTTGGAGGA+GGG 0.650603 3_2:-86514557 Msa0433890:CDS
AAAGGGGAAGAATGTGCGTG+TGG 0.654123 3_2:+86518774 None:intergenic
GTGCGAAGTTGACGATTGGG+AGG 0.658422 3_2:+86518658 None:intergenic
ATAGCACGGCTAAGAACAGG+TGG 0.660468 3_2:+86514498 None:intergenic
AAGAACGGTTGTGATGAAAG+GGG 0.663217 3_2:+86518758 None:intergenic
AAGCCAGGTGGTTTAAACAG+AGG 0.667539 3_2:+86514435 None:intergenic
TGGCAAATATGCATGGCCGG+TGG 0.673011 3_2:-86516909 Msa0433890:CDS
TCAGGTTGGATAGAGTGGGA+TGG 0.674499 3_2:-86516331 Msa0433890:intron
CTACCGGTAATCCAATAGCA+CGG 0.689701 3_2:+86514484 None:intergenic
ATTGGACGTGACAAGTGACA+TGG 0.693270 3_2:-86514580 Msa0433890:CDS
AGATAGTTACCCGCTATGAG+GGG 0.698566 3_2:+86518636 None:intergenic
TGAATTAGAAGCAACAACAG+AGG 0.700490 3_2:-86514828 Msa0433890:CDS
CAACTTCGCACCCCTCATAG+CGG 0.701316 3_2:-86518646 Msa0433890:CDS
GCCCCAACACCAGTAAACCT+AGG 0.703555 3_2:+86518394 None:intergenic
AATTTGTCTCAATCCACCAG+CGG 0.711563 3_2:+86515856 None:intergenic
ATGAAACCTTGATTCCAAAG+GGG 0.725706 3_2:+86517163 None:intergenic
TTCGAAACCTCCGAACAAGG+AGG 0.737221 3_2:-86518141 Msa0433890:CDS
ACAACATACTACAAGCCAGG+TGG 0.761546 3_2:+86514423 None:intergenic
TCTTATTCAGAAAAGAACTG+GGG 0.762832 3_2:-86516280 Msa0433890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGTAATTCTAATA+TGG - chr3_2:86515094-86515113 Msa0433890:intron 10.0%
!! TAAAGAATAATAATTATTTC+TGG + chr3_2:86516096-86516115 None:intergenic 10.0%
!! TTGATACAAATTATAATTAT+AGG - chr3_2:86516292-86516311 Msa0433890:CDS 10.0%
!!! ATATAATTTTTTTGAACAAT+TGG - chr3_2:86516664-86516683 Msa0433890:intron 10.0%
!! AATACTAAAATTAAAATTGT+GGG - chr3_2:86518627-86518646 Msa0433890:intron 10.0%
!! TTTATTCAATTTATGTGTTT+AGG - chr3_2:86514789-86514808 Msa0433890:CDS 15.0%
!!! CAAGTTAATTTTTTTTTGAA+TGG - chr3_2:86515145-86515164 Msa0433890:CDS 15.0%
!!! TAATTTTTTTTTGAATGGTT+AGG - chr3_2:86515150-86515169 Msa0433890:CDS 15.0%
!! GATAAAGTAAAGTTATTATA+AGG - chr3_2:86515689-86515708 Msa0433890:intron 15.0%
!! TACAAATTATAATTATAGGT+CGG - chr3_2:86516296-86516315 Msa0433890:CDS 15.0%
!!! TGTATTTTGATTGAAAATTA+TGG - chr3_2:86517253-86517272 Msa0433890:intron 15.0%
!!! AAATAAATGTTGATGATAAT+AGG - chr3_2:86517644-86517663 Msa0433890:intron 15.0%
!! AATATAATATACTGATAGAA+AGG + chr3_2:86518074-86518093 None:intergenic 15.0%
!! AACATAAAACATAATGTAAT+TGG + chr3_2:86518289-86518308 None:intergenic 15.0%
!!! TCAATTAATTATATTTTTGC+AGG - chr3_2:86518507-86518526 Msa0433890:CDS 15.0%
!! GAATACTAAAATTAAAATTG+TGG - chr3_2:86518626-86518645 Msa0433890:intron 15.0%
!!! ATATTTTCTATGTATAAACA+TGG + chr3_2:86519051-86519070 None:intergenic 15.0%
!!! CTTTACTTTATCTTTTGTAA+AGG + chr3_2:86515681-86515700 None:intergenic 20.0%
!!! ACTAGTTTTACTTATTTCAT+TGG - chr3_2:86515951-86515970 Msa0433890:intron 20.0%
!!! CTAAATTTGTTGGAAATTAA+AGG + chr3_2:86516012-86516031 None:intergenic 20.0%
!! ACTTTATCATTAAATTCCTA+TGG + chr3_2:86516154-86516173 None:intergenic 20.0%
!!! AATATTTTGTAGATATCAAG+TGG + chr3_2:86516614-86516633 None:intergenic 20.0%
!!! TATGATAATGAACATTTACA+AGG - chr3_2:86516742-86516761 Msa0433890:intron 20.0%
!! TATTAACAATATTGAATCTC+AGG - chr3_2:86517010-86517029 Msa0433890:CDS 20.0%
!!! TTTTCAATCAAAATACAAGA+AGG + chr3_2:86517250-86517269 None:intergenic 20.0%
!!! TTCTATTGTTCTTTTTGTTT+TGG - chr3_2:86517697-86517716 Msa0433890:intron 20.0%
!!! TACATTATGTTTTATGTTGA+TGG - chr3_2:86518291-86518310 Msa0433890:intron 20.0%
!! TTTGTCTTTGATTAGATTAA+TGG - chr3_2:86518718-86518737 Msa0433890:CDS 20.0%
!! TTAATGTATAAGAATGTTCA+TGG - chr3_2:86519107-86519126 Msa0433890:five_prime_UTR 20.0%
!!! TTTTTTTTGAATGGTTAGGT+AGG - chr3_2:86515154-86515173 Msa0433890:CDS 25.0%
!! TGTCATTTAAACATACATGA+GGG - chr3_2:86515463-86515482 Msa0433890:intron 25.0%
! TTGACTATTAAGACTCTATT+TGG - chr3_2:86515587-86515606 Msa0433890:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr3_2:86515836-86515855 Msa0433890:CDS 25.0%
! GAAATAAGTAAAACTAGTTC+AGG + chr3_2:86515949-86515968 None:intergenic 25.0%
!!! TCTGATTAGTCTAAATTTGT+TGG + chr3_2:86516022-86516041 None:intergenic 25.0%
! ATTTAGACTAATCAGACAAA+TGG - chr3_2:86516026-86516045 Msa0433890:intron 25.0%
!! TTTAATGATAAAGTGTTCGA+AGG - chr3_2:86516160-86516179 Msa0433890:intron 25.0%
! TAGACTAAAACTGAAATGAT+AGG - chr3_2:86516772-86516791 Msa0433890:intron 25.0%
! AATGAATATGAGACTTTAAG+AGG + chr3_2:86516857-86516876 None:intergenic 25.0%
! TAAAAGTTATTCACACTTGT+TGG - chr3_2:86516955-86516974 Msa0433890:CDS 25.0%
!! AGTTCTTTTCTGAATAAGAT+GGG + chr3_2:86517078-86517097 None:intergenic 25.0%
! ATCTTATTCAGAAAAGAACT+GGG - chr3_2:86517078-86517097 Msa0433890:intron 25.0%
! TATTAATCTACAATACTTGC+TGG + chr3_2:86517321-86517340 None:intergenic 25.0%
!!! TTTTTTTGTATCTCACATAG+TGG - chr3_2:86517413-86517432 Msa0433890:intron 25.0%
!!! AATGTTGATGATAATAGGAA+TGG - chr3_2:86517649-86517668 Msa0433890:intron 25.0%
! ATTTGACAAAATCTATAGTG+AGG - chr3_2:86517755-86517774 Msa0433890:intron 25.0%
! TGTTAAAATTTATTGTCGAG+TGG - chr3_2:86517888-86517907 Msa0433890:intron 25.0%
! GTTCTAATTTGAATGTCTAA+TGG - chr3_2:86517940-86517959 Msa0433890:intron 25.0%
! ATTTCATCTGTTTCAAATTG+TGG - chr3_2:86517972-86517991 Msa0433890:intron 25.0%
! ATGAATATACAACTCATACT+TGG - chr3_2:86518366-86518385 Msa0433890:CDS 25.0%
! TGAATATACAACTCATACTT+GGG - chr3_2:86518367-86518386 Msa0433890:CDS 25.0%
!! TTTTCTTAAAGTAAACATGC+TGG - chr3_2:86518464-86518483 Msa0433890:CDS 25.0%
! TGATGAATGTTATGTGAAAA+TGG - chr3_2:86518748-86518767 Msa0433890:CDS 25.0%
!! CGATGATTAGTTTGAAAGAA+CGG + chr3_2:86514619-86514638 None:intergenic 30.0%
! AGATTGAGATTGTTGTTGTT+CGG + chr3_2:86514657-86514676 None:intergenic 30.0%
GTATACATAAAACCTACCTT+AGG + chr3_2:86515249-86515268 None:intergenic 30.0%
! TTTAAAATATGCATGACGAC+AGG + chr3_2:86515339-86515358 None:intergenic 30.0%
! CTGTCATTTAAACATACATG+AGG - chr3_2:86515462-86515481 Msa0433890:intron 30.0%
ATTTAAACATACATGAGGGT+AGG - chr3_2:86515467-86515486 Msa0433890:intron 30.0%
! CACTTTTCCAATGAATAAGT+AGG - chr3_2:86515496-86515515 Msa0433890:intron 30.0%
! TTTTCCAATGAATAAGTAGG+TGG - chr3_2:86515499-86515518 Msa0433890:intron 30.0%
AATAAGCTGAAAGCAACTTA+TGG - chr3_2:86515745-86515764 Msa0433890:intron 30.0%
AAGTAGTTGCGAAATTGTTT+GGG + chr3_2:86515800-86515819 None:intergenic 30.0%
TAAGTAGTTGCGAAATTGTT+TGG + chr3_2:86515801-86515820 None:intergenic 30.0%
TTCTGTCACAATTACATTAC+TGG - chr3_2:86516055-86516074 Msa0433890:intron 30.0%
! TACATTACTGGTTATAAGAG+TGG - chr3_2:86516067-86516086 Msa0433890:intron 30.0%
GTTTGCAAATGCTTCTTATT+TGG - chr3_2:86516121-86516140 Msa0433890:intron 30.0%
AATGAAACCTTGATTCCAAA+GGG + chr3_2:86516200-86516219 None:intergenic 30.0%
AAATGAAACCTTGATTCCAA+AGG + chr3_2:86516201-86516220 None:intergenic 30.0%
CAGTTTATGTGAAGCTATTA+TGG - chr3_2:86516548-86516567 Msa0433890:intron 30.0%
! ATGTAATTTGCCAAAGTGAT+TGG - chr3_2:86516581-86516600 Msa0433890:intron 30.0%
ATGATGCTTGACAATTAGTT+TGG - chr3_2:86516795-86516814 Msa0433890:intron 30.0%
! TGATGCTTGACAATTAGTTT+GGG - chr3_2:86516796-86516815 Msa0433890:intron 30.0%
AACAATATTGAATCTCAGGT+TGG - chr3_2:86517014-86517033 Msa0433890:CDS 30.0%
! GTTCTTTTCTGAATAAGATG+GGG + chr3_2:86517077-86517096 None:intergenic 30.0%
! CAGTTCTTTTCTGAATAAGA+TGG + chr3_2:86517079-86517098 None:intergenic 30.0%
CATCTTATTCAGAAAAGAAC+TGG - chr3_2:86517077-86517096 Msa0433890:intron 30.0%
TCTTATTCAGAAAAGAACTG+GGG - chr3_2:86517079-86517098 Msa0433890:intron 30.0%
! TTTACCCAAAACCATTTTCT+CGG + chr3_2:86517115-86517134 None:intergenic 30.0%
ATTCAAGTAACCATAAAACG+AGG + chr3_2:86517295-86517314 None:intergenic 30.0%
ATGATAATAGGAATGGCTAA+AGG - chr3_2:86517656-86517675 Msa0433890:intron 30.0%
GCTTAAAATCATGAATGATG+TGG - chr3_2:86517860-86517879 Msa0433890:intron 30.0%
GAAACAGATGAAATCACTAA+CGG + chr3_2:86517966-86517985 None:intergenic 30.0%
TGTTTCAAATTGTGGTAACA+AGG - chr3_2:86517980-86517999 Msa0433890:intron 30.0%
!!! TCTTGTGTAGGATTAGTTTT+GGG - chr3_2:86518009-86518028 Msa0433890:intron 30.0%
!! AGTTTTATGAATTTGTGCCA+TGG - chr3_2:86518177-86518196 Msa0433890:CDS 30.0%
GAATATACAACTCATACTTG+GGG - chr3_2:86518368-86518387 Msa0433890:CDS 30.0%
TATCTTTACAAGCTTGAGAA+AGG + chr3_2:86518597-86518616 None:intergenic 30.0%
GTGAAAATGGCAGATAATAT+TGG - chr3_2:86518761-86518780 Msa0433890:CDS 30.0%
! TCATGGTAAGTACAAACTTT+TGG - chr3_2:86519001-86519020 Msa0433890:five_prime_UTR 30.0%
!! GTAAGTACAAACTTTTGGAA+GGG - chr3_2:86519006-86519025 Msa0433890:five_prime_UTR 30.0%
ATTGTTAACGTGTGTTTAGT+TGG - chr3_2:86519131-86519150 Msa0433890:five_prime_UTR 30.0%
AACTGAAGCTGAAAAAGAAG+CGG - chr3_2:86514322-86514341 Msa0433890:three_prime_UTR 35.0%
AAGAAAAGAACGTGTGATGT+TGG - chr3_2:86514389-86514408 Msa0433890:three_prime_UTR 35.0%
CAAGAATCATCATTCATCCA+TGG - chr3_2:86514490-86514509 Msa0433890:CDS 35.0%
ATTCAATAGCTTGGTTTCCA+TGG + chr3_2:86514510-86514529 None:intergenic 35.0%
GAAGGAAAGTGAATAAGAGA+AGG + chr3_2:86514536-86514555 None:intergenic 35.0%
AGAAGAAGAAGAAGAAACAG+AGG + chr3_2:86514561-86514580 None:intergenic 35.0%
AAAGAACGGTTGTGATGAAA+GGG + chr3_2:86514605-86514624 None:intergenic 35.0%
GTGTTTAGGTATCACTTTGA+TGG - chr3_2:86514803-86514822 Msa0433890:CDS 35.0%
!! CAAAAGCTTTGTCTCTTTTC+AGG + chr3_2:86514875-86514894 None:intergenic 35.0%
TCCAAAGTTGTCAATTCCTT+GGG + chr3_2:86514929-86514948 None:intergenic 35.0%
TTCCAAAGTTGTCAATTCCT+TGG + chr3_2:86514930-86514949 None:intergenic 35.0%
!! GGAATTGACAACTTTGGAAT+TGG - chr3_2:86514931-86514950 Msa0433890:intron 35.0%
!! ACTTTGGAATTGGCACAATA+TGG - chr3_2:86514941-86514960 Msa0433890:intron 35.0%
TACATAAAACCTACCTTAGG+AGG + chr3_2:86515246-86515265 None:intergenic 35.0%
AATTGAGCTACTGAACTGAA+GGG + chr3_2:86515413-86515432 None:intergenic 35.0%
TAATTGAGCTACTGAACTGA+AGG + chr3_2:86515414-86515433 None:intergenic 35.0%
ACACTCACTACAAATTAGAG+AGG - chr3_2:86515433-86515452 Msa0433890:intron 35.0%
CACTCACTACAAATTAGAGA+GGG - chr3_2:86515434-86515453 Msa0433890:intron 35.0%
! GGTGTTTTCATAAGCTATCA+TGG - chr3_2:86515710-86515729 Msa0433890:intron 35.0%
GAGGTTATGAAAACTGTGTA+TGG + chr3_2:86515776-86515795 None:intergenic 35.0%
ACTTATTTGAGCTCATATGC+TGG + chr3_2:86515826-86515845 None:intergenic 35.0%
! CTTATTTGGTCACTTTCCAT+AGG - chr3_2:86516135-86516154 Msa0433890:intron 35.0%
ATGAAACCTTGATTCCAAAG+GGG + chr3_2:86516199-86516218 None:intergenic 35.0%
TATAGTACACGTCCTGTATA+TGG - chr3_2:86516354-86516373 Msa0433890:intron 35.0%
!!! TTCCTGTTTTTGAACCACAT+TGG - chr3_2:86516430-86516449 Msa0433890:intron 35.0%
ACTTTGGCAAATTACATGAG+TGG + chr3_2:86516578-86516597 None:intergenic 35.0%
ATTACATGCCAGTAGAATTG+TGG - chr3_2:86516631-86516650 Msa0433890:intron 35.0%
TAATTATTGCTAGAGCCATG+TGG - chr3_2:86516694-86516713 Msa0433890:intron 35.0%
! GACAATTAGTTTGGGAAGTA+TGG - chr3_2:86516804-86516823 Msa0433890:intron 35.0%
! TTACCCAAAACCATTTTCTC+GGG + chr3_2:86517114-86517133 None:intergenic 35.0%
CATAGAGTTTATCTGCACAT+CGG - chr3_2:86517167-86517186 Msa0433890:CDS 35.0%
!!! TGTTGCTTTTCCTCGTTTTA+TGG - chr3_2:86517282-86517301 Msa0433890:intron 35.0%
GACATTTGAAAATGCTGCAT+TGG - chr3_2:86517540-86517559 Msa0433890:intron 35.0%
TAATAGGAATGGCTAAAGGA+CGG - chr3_2:86517660-86517679 Msa0433890:intron 35.0%
TATTGCATTACTGACACTTC+AGG - chr3_2:86517821-86517840 Msa0433890:intron 35.0%
!!! CTCTTGTGTAGGATTAGTTT+TGG - chr3_2:86518008-86518027 Msa0433890:intron 35.0%
TATGAATTTGTGCCATGGAA+TGG - chr3_2:86518182-86518201 Msa0433890:CDS 35.0%
AAGTAAACATGCTGGAATTC+TGG - chr3_2:86518472-86518491 Msa0433890:CDS 35.0%
TGAATTAGAAGCAACAACAG+AGG - chr3_2:86518531-86518550 Msa0433890:CDS 35.0%
GCTTGTAAAGATACATGCTT+TGG - chr3_2:86518604-86518623 Msa0433890:intron 35.0%
TTGTGGGAAAGAAGATATGA+CGG - chr3_2:86518643-86518662 Msa0433890:intron 35.0%
ACAGAGGAAACAGATTATAG+AGG + chr3_2:86518911-86518930 None:intergenic 35.0%
TCCATGTAAAACTTCTCTCT+TGG - chr3_2:86518969-86518988 Msa0433890:five_prime_UTR 35.0%
! ACCAAGAGAGAAGTTTTACA+TGG + chr3_2:86518973-86518992 None:intergenic 35.0%
! GGTAAGTACAAACTTTTGGA+AGG - chr3_2:86519005-86519024 Msa0433890:five_prime_UTR 35.0%
TGAGAGCAGTTTGATTGCTT+TGG + chr3_2:86514291-86514310 None:intergenic 40.0%
!!! GCTTCTTTTTCAGCTTCAGT+TGG + chr3_2:86514323-86514342 None:intergenic 40.0%
AGAAGGAGGATTCAATAGCT+TGG + chr3_2:86514519-86514538 None:intergenic 40.0%
GGAAAGTGAATAAGAGAAGG+AGG + chr3_2:86514533-86514552 None:intergenic 40.0%
AGAAGAAGAAGAAACAGAGG+AGG + chr3_2:86514558-86514577 None:intergenic 40.0%
AAGAACGGTTGTGATGAAAG+GGG + chr3_2:86514604-86514623 None:intergenic 40.0%
GAAAGAACGGTTGTGATGAA+AGG + chr3_2:86514606-86514625 None:intergenic 40.0%
! TGTAGGAGAGTAAATGGGTT+TGG + chr3_2:86514681-86514700 None:intergenic 40.0%
AAGATAGTTACCCGCTATGA+GGG + chr3_2:86514727-86514746 None:intergenic 40.0%
AAAGATAGTTACCCGCTATG+AGG + chr3_2:86514728-86514747 None:intergenic 40.0%
!! GCTTTGTCTCTTTTCAGGAA+TGG + chr3_2:86514870-86514889 None:intergenic 40.0%
TCCCAAGGAATTGACAACTT+TGG - chr3_2:86514925-86514944 Msa0433890:intron 40.0%
AATTGGCACAATATGGACCT+AGG - chr3_2:86514948-86514967 Msa0433890:intron 40.0%
CAATATGGACCTAGGTTTAC+TGG - chr3_2:86514956-86514975 Msa0433890:intron 40.0%
! TGTGTGATTGGGGAGTATAT+TGG + chr3_2:86515024-86515043 None:intergenic 40.0%
TCCCCAATCACACAATTTCT+GGG - chr3_2:86515030-86515049 Msa0433890:intron 40.0%
TCCCCAGAAATTGTGTGATT+GGG + chr3_2:86515035-86515054 None:intergenic 40.0%
TTCCCCAGAAATTGTGTGAT+TGG + chr3_2:86515036-86515055 None:intergenic 40.0%
AGGTAGGAATGAACTGATGT+TGG - chr3_2:86515170-86515189 Msa0433890:CDS 40.0%
GGTAGGAATGAACTGATGTT+GGG - chr3_2:86515171-86515190 Msa0433890:CDS 40.0%
! GATGTTGGGTAACACTTTTG+CGG - chr3_2:86515185-86515204 Msa0433890:CDS 40.0%
AAATTCGAAACCTCCGAACA+AGG - chr3_2:86515215-86515234 Msa0433890:intron 40.0%
CTCACCACCTACTTATTCAT+TGG + chr3_2:86515506-86515525 None:intergenic 40.0%
AATAAGTAGGTGGTGAGTGT+TGG - chr3_2:86515509-86515528 Msa0433890:intron 40.0%
ATAAGTAGGTGGTGAGTGTT+GGG - chr3_2:86515510-86515529 Msa0433890:intron 40.0%
TGCGTCATTTAAGCATACCT+TGG - chr3_2:86515541-86515560 Msa0433890:intron 40.0%
GCGTCATTTAAGCATACCTT+GGG - chr3_2:86515542-86515561 Msa0433890:intron 40.0%
CGTCATTTAAGCATACCTTG+GGG - chr3_2:86515543-86515562 Msa0433890:intron 40.0%
GTCATTTAAGCATACCTTGG+GGG - chr3_2:86515544-86515563 Msa0433890:intron 40.0%
TAAGAAGAAAATGACCCCCA+AGG + chr3_2:86515561-86515580 None:intergenic 40.0%
AGTCAATCCAAATAGGTCCT+AGG - chr3_2:86515843-86515862 Msa0433890:CDS 40.0%
GTTAACACCTAGGACCTATT+TGG + chr3_2:86515853-86515872 None:intergenic 40.0%
TAACAGGGAAGTTAACACCT+AGG + chr3_2:86515863-86515882 None:intergenic 40.0%
TAGTCGTTGACACTCTTTCA+AGG - chr3_2:86515974-86515993 Msa0433890:intron 40.0%
AGTCGTTGACACTCTTTCAA+GGG - chr3_2:86515975-86515994 Msa0433890:intron 40.0%
CAAGGTTTCATTTGCGATGA+TGG - chr3_2:86516208-86516227 Msa0433890:intron 40.0%
!! GTTTCATTTGCGATGATGGA+AGG - chr3_2:86516212-86516231 Msa0433890:intron 40.0%
TACACGTCCTGTATATGGTT+GGG - chr3_2:86516359-86516378 Msa0433890:intron 40.0%
TATATGGTTGGGGTGATGTT+GGG - chr3_2:86516370-86516389 Msa0433890:intron 40.0%
TGCCAATGTGGTTCAAAAAC+AGG + chr3_2:86516435-86516454 None:intergenic 40.0%
ACCACATTGGCAAATATGCA+TGG - chr3_2:86516443-86516462 Msa0433890:intron 40.0%
TGCCAGTAGAATTGTGGTAT+TGG - chr3_2:86516637-86516656 Msa0433890:intron 40.0%
GTCCAATACCACAATTCTAC+TGG + chr3_2:86516642-86516661 None:intergenic 40.0%
! TAGTTTGGGAAGTATGGTGT+TGG - chr3_2:86516810-86516829 Msa0433890:intron 40.0%
! TTTAAGAGGAGCACATTCCA+AGG + chr3_2:86516843-86516862 None:intergenic 40.0%
GTCTCATATTCATTTCTCGC+CGG - chr3_2:86516863-86516882 Msa0433890:intron 40.0%
!! AATCTCAGGTTGGATAGAGT+GGG - chr3_2:86517024-86517043 Msa0433890:CDS 40.0%
TATTCAGAAAAGAACTGGGG+TGG - chr3_2:86517082-86517101 Msa0433890:intron 40.0%
! GTTCCCGAGAAAATGGTTTT+GGG - chr3_2:86517108-86517127 Msa0433890:intron 40.0%
!! TTATCTGCACATCGGTTTCA+TGG - chr3_2:86517175-86517194 Msa0433890:CDS 40.0%
AACGAGGAAAAGCAACATTC+TGG + chr3_2:86517279-86517298 None:intergenic 40.0%
! TTGTATCTCACATAGTGGAG+TGG - chr3_2:86517418-86517437 Msa0433890:intron 40.0%
! GCTCAGTGTAATGTTTTCGA+AGG - chr3_2:86517454-86517473 Msa0433890:intron 40.0%
!!! AATGTTTTCGAAGGTGCTAG+TGG - chr3_2:86517463-86517482 Msa0433890:intron 40.0%
AATTTGTCTCAATCCACCAG+CGG + chr3_2:86517506-86517525 None:intergenic 40.0%
!! TGGTGGATTGAGACAAATTC+CGG - chr3_2:86517507-86517526 Msa0433890:intron 40.0%
TCAAATGTCTCAGTTAGTCC+CGG + chr3_2:86517529-86517548 None:intergenic 40.0%
! GCTGCATTGGTAACTTCATA+TGG - chr3_2:86517553-86517572 Msa0433890:intron 40.0%
AATAGGAATGGCTAAAGGAC+GGG - chr3_2:86517661-86517680 Msa0433890:intron 40.0%
GTCTATTTGCCTTCTTCTGT+TGG - chr3_2:86518031-86518050 Msa0433890:intron 40.0%
ATGTAGTGACCAACAGAAGA+AGG + chr3_2:86518043-86518062 None:intergenic 40.0%
TGTTGCAAATTAGCGCAGAT+TGG - chr3_2:86518137-86518156 Msa0433890:CDS 40.0%
CAGATTGGAATTCACTATGG+TGG - chr3_2:86518152-86518171 Msa0433890:CDS 40.0%
!! ATGGAATGGTGTTGTAAGCT+GGG - chr3_2:86518196-86518215 Msa0433890:intron 40.0%
AAGTAGCTACTTGGGGTTAT+TGG - chr3_2:86518219-86518238 Msa0433890:intron 40.0%
TGGTTTATGTCTGCAGACAA+CGG - chr3_2:86518239-86518258 Msa0433890:intron 40.0%
TGCAGACAACGGAAATTATG+TGG - chr3_2:86518250-86518269 Msa0433890:intron 40.0%
CAACTCATACTTGGGGTTAT+TGG - chr3_2:86518375-86518394 Msa0433890:CDS 40.0%
CCATGGTTTAACACTTGGAA+GGG - chr3_2:86518825-86518844 Msa0433890:CDS 40.0%
TTTCCTCTGTTTAAACCACC+TGG - chr3_2:86518921-86518940 Msa0433890:five_prime_UTR 40.0%
ACAACAACATACTACAAGCC+AGG + chr3_2:86518942-86518961 None:intergenic 40.0%
TCTCTTGGTACAGAGTTTCA+TGG - chr3_2:86518984-86519003 Msa0433890:five_prime_UTR 40.0%
GTTAACGTGTGTTTAGTTGG+AGG - chr3_2:86519134-86519153 Msa0433890:five_prime_UTR 40.0%
GAAGAAGAAACAGAGGAGGA+AGG + chr3_2:86514554-86514573 None:intergenic 45.0%
! GGAGGTGTAGGAGAGTAAAT+GGG + chr3_2:86514686-86514705 None:intergenic 45.0%
AGATAGTTACCCGCTATGAG+GGG + chr3_2:86514726-86514745 None:intergenic 45.0%
AACTGCACGCAAATTCTTCG+AGG - chr3_2:86514826-86514845 Msa0433890:CDS 45.0%
ACTGCACGCAAATTCTTCGA+GGG - chr3_2:86514827-86514846 Msa0433890:CDS 45.0%
GACCTAGGTTTACTGGTGTT+GGG - chr3_2:86514963-86514982 Msa0433890:intron 45.0%
! ACCTAGGTTTACTGGTGTTG+GGG - chr3_2:86514964-86514983 Msa0433890:intron 45.0%
CTCCCCAATCACACAATTTC+TGG - chr3_2:86515029-86515048 Msa0433890:intron 45.0%
CCCCAGAAATTGTGTGATTG+GGG + chr3_2:86515034-86515053 None:intergenic 45.0%
CCCCAATCACACAATTTCTG+GGG - chr3_2:86515031-86515050 Msa0433890:intron 45.0%
TTAGGAGGAACCTCCTTGTT+CGG + chr3_2:86515231-86515250 None:intergenic 45.0%
GTTGCGAAATTGTTTGGGAG+AGG + chr3_2:86515795-86515814 None:intergenic 45.0%
GCAAAGATGCAGCAGTAACA+GGG + chr3_2:86515878-86515897 None:intergenic 45.0%
AGCAAAGATGCAGCAGTAAC+AGG + chr3_2:86515879-86515898 None:intergenic 45.0%
!!! GTTTTCAAGTCACTCCCCTT+TGG - chr3_2:86516182-86516201 Msa0433890:intron 45.0%
AAACAGTAAAGACTGCTCGC+TGG - chr3_2:86516328-86516347 Msa0433890:CDS 45.0%
AACAGTAAAGACTGCTCGCT+GGG - chr3_2:86516329-86516348 Msa0433890:CDS 45.0%
GTACACGTCCTGTATATGGT+TGG - chr3_2:86516358-86516377 Msa0433890:intron 45.0%
ACACGTCCTGTATATGGTTG+GGG - chr3_2:86516360-86516379 Msa0433890:intron 45.0%
ACATCACCCCAACCATATAC+AGG + chr3_2:86516369-86516388 None:intergenic 45.0%
GTATATGGTTGGGGTGATGT+TGG - chr3_2:86516369-86516388 Msa0433890:intron 45.0%
TCTACACAGAAGTCAACTGC+TGG - chr3_2:86516393-86516412 Msa0433890:intron 45.0%
GCCATGCATATTTGCCAATG+TGG + chr3_2:86516447-86516466 None:intergenic 45.0%
CATTGGCAAATATGCATGGC+CGG - chr3_2:86516447-86516466 Msa0433890:intron 45.0%
TGGCTAGATGCCAATCACTT+TGG + chr3_2:86516594-86516613 None:intergenic 45.0%
! TTTCTCGCCGGTGTCAATTT+CGG - chr3_2:86516875-86516894 Msa0433890:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+TGG - chr3_2:86516888-86516907 Msa0433890:intron 45.0%
!! GAATCTCAGGTTGGATAGAG+TGG - chr3_2:86517023-86517042 Msa0433890:CDS 45.0%
! CGTTCCCGAGAAAATGGTTT+TGG - chr3_2:86517107-86517126 Msa0433890:intron 45.0%
TGCAACACTCATCGAAACAC+TGG + chr3_2:86517382-86517401 None:intergenic 45.0%
!! GGTGGATTGAGACAAATTCC+GGG - chr3_2:86517508-86517527 Msa0433890:intron 45.0%
ATAGGAATGGCTAAAGGACG+GGG - chr3_2:86517662-86517681 Msa0433890:intron 45.0%
TATTGTCGAGTGGCTCAAGT+AGG - chr3_2:86517898-86517917 Msa0433890:intron 45.0%
!! ACAAGGTGTTGCTCTTGTGT+AGG - chr3_2:86517997-86518016 Msa0433890:intron 45.0%
GCGCAGATTGGAATTCACTA+TGG - chr3_2:86518149-86518168 Msa0433890:CDS 45.0%
CAGCTTACAACACCATTCCA+TGG + chr3_2:86518197-86518216 None:intergenic 45.0%
!! CATGGAATGGTGTTGTAAGC+TGG - chr3_2:86518195-86518214 Msa0433890:intron 45.0%
TAAGCTGGGAAGTAGCTACT+TGG - chr3_2:86518210-86518229 Msa0433890:intron 45.0%
AAGCTGGGAAGTAGCTACTT+GGG - chr3_2:86518211-86518230 Msa0433890:intron 45.0%
! CTGGAATTCTGGCTAATGAC+AGG - chr3_2:86518483-86518502 Msa0433890:CDS 45.0%
GAAGCAACAACAGAGGATCA+AGG - chr3_2:86518538-86518557 Msa0433890:CDS 45.0%
AAGAAGATATGACGGCAGCA+AGG - chr3_2:86518651-86518670 Msa0433890:CDS 45.0%
AGAAGATATGACGGCAGCAA+GGG - chr3_2:86518652-86518671 Msa0433890:CDS 45.0%
ATTGGACGTGACAAGTGACA+TGG - chr3_2:86518779-86518798 Msa0433890:CDS 45.0%
GCCATGGTTTAACACTTGGA+AGG - chr3_2:86518824-86518843 Msa0433890:CDS 45.0%
CCCTTCCAAGTGTTAAACCA+TGG + chr3_2:86518828-86518847 None:intergenic 45.0%
! TAGCCGTGCTATTGGATTAC+CGG - chr3_2:86518872-86518891 Msa0433890:exon 45.0%
CTACCGGTAATCCAATAGCA+CGG + chr3_2:86518878-86518897 None:intergenic 45.0%
GGATTACCGGTAGATGTAGA+TGG - chr3_2:86518885-86518904 Msa0433890:five_prime_UTR 45.0%
TAGAGGCCATCTACATCTAC+CGG + chr3_2:86518894-86518913 None:intergenic 45.0%
AAGCCAGGTGGTTTAAACAG+AGG + chr3_2:86518927-86518946 None:intergenic 45.0%
ACAACATACTACAAGCCAGG+TGG + chr3_2:86518939-86518958 None:intergenic 45.0%
AAAGGGGAAGAATGTGCGTG+TGG + chr3_2:86514588-86514607 None:intergenic 50.0%
! GGGAGGTGTAGGAGAGTAAA+TGG + chr3_2:86514687-86514706 None:intergenic 50.0%
! AGTTGACGATTGGGAGGTGT+AGG + chr3_2:86514698-86514717 None:intergenic 50.0%
CACGCAAATTCTTCGAGGGT+TGG - chr3_2:86514831-86514850 Msa0433890:CDS 50.0%
TGAGAATCCTGCGTTTCCCA+AGG - chr3_2:86514910-86514929 Msa0433890:intron 50.0%
GTCAATTCCTTGGGAAACGC+AGG + chr3_2:86514920-86514939 None:intergenic 50.0%
GGACCTAGGTTTACTGGTGT+TGG - chr3_2:86514962-86514981 Msa0433890:intron 50.0%
! GGTGTTGGGGCACAAATTCT+TGG - chr3_2:86514977-86514996 Msa0433890:intron 50.0%
TTCGAAACCTCCGAACAAGG+AGG - chr3_2:86515218-86515237 Msa0433890:intron 50.0%
GAACAAGGAGGTTCCTCCTA+AGG - chr3_2:86515230-86515249 Msa0433890:intron 50.0%
AAGGAGGTTCCTCCTAAGGT+AGG - chr3_2:86515234-86515253 Msa0433890:intron 50.0%
!! GTCACTCCCCTTTGGAATCA+AGG - chr3_2:86516190-86516209 Msa0433890:intron 50.0%
GACAGCACATACCTGTTGAC+AGG + chr3_2:86516476-86516495 None:intergenic 50.0%
CCTATTCCTGACTCACCACA+TGG + chr3_2:86516712-86516731 None:intergenic 50.0%
CCATGTGGTGAGTCAGGAAT+AGG - chr3_2:86516709-86516728 Msa0433890:intron 50.0%
!! TGGGAAGTATGGTGTTGGCT+TGG - chr3_2:86516815-86516834 Msa0433890:intron 50.0%
!! GGGAAGTATGGTGTTGGCTT+GGG - chr3_2:86516816-86516835 Msa0433890:intron 50.0%
!! GGAAGTATGGTGTTGGCTTG+GGG - chr3_2:86516817-86516836 Msa0433890:intron 50.0%
TAGCCCACCGAAATTGACAC+CGG + chr3_2:86516885-86516904 None:intergenic 50.0%
!! TCAGGTTGGATAGAGTGGGA+TGG - chr3_2:86517028-86517047 Msa0433890:CDS 50.0%
GAAATTGCACTTACAGCCGC+TGG - chr3_2:86517487-86517506 Msa0433890:intron 50.0%
AGCTGGGAAGTAGCTACTTG+GGG - chr3_2:86518212-86518231 Msa0433890:intron 50.0%
GAAAGGCCAGCTTCTGATGT+TGG + chr3_2:86518580-86518599 None:intergenic 50.0%
ATATGACGGCAGCAAGGGAA+AGG - chr3_2:86518657-86518676 Msa0433890:CDS 50.0%
!! GACATGGCAGCTCTAGAAGT+TGG - chr3_2:86518795-86518814 Msa0433890:CDS 50.0%
!! ATGGCAGCTCTAGAAGTTGG+AGG - chr3_2:86518798-86518817 Msa0433890:CDS 50.0%
!! CAGCTCTAGAAGTTGGAGGA+GGG - chr3_2:86518802-86518821 Msa0433890:CDS 50.0%
GAGGGCCATGGTTTAACACT+TGG - chr3_2:86518820-86518839 Msa0433890:CDS 50.0%
ATAGCACGGCTAAGAACAGG+TGG + chr3_2:86518864-86518883 None:intergenic 50.0%
CCAATAGCACGGCTAAGAAC+AGG + chr3_2:86518867-86518886 None:intergenic 50.0%
CCTGTTCTTAGCCGTGCTAT+TGG - chr3_2:86518864-86518883 Msa0433890:exon 50.0%
GTGCGAAGTTGACGATTGGG+AGG + chr3_2:86514704-86514723 None:intergenic 55.0%
GGGGTGCGAAGTTGACGATT+GGG + chr3_2:86514707-86514726 None:intergenic 55.0%
! AGGGGTGCGAAGTTGACGAT+TGG + chr3_2:86514708-86514727 None:intergenic 55.0%
CAACTTCGCACCCCTCATAG+CGG - chr3_2:86514713-86514732 Msa0433890:CDS 55.0%
AACTTCGCACCCCTCATAGC+GGG - chr3_2:86514714-86514733 Msa0433890:CDS 55.0%
GCCCCAACACCAGTAAACCT+AGG + chr3_2:86514968-86514987 None:intergenic 55.0%
CACAGAAGTCAACTGCTGGC+TGG - chr3_2:86516397-86516416 Msa0433890:intron 55.0%
TGGCAAATATGCATGGCCGG+TGG - chr3_2:86516450-86516469 Msa0433890:intron 55.0%
CATACCTGTTGACAGGCCAC+CGG + chr3_2:86516469-86516488 None:intergenic 55.0%
CTAGAGCCATGTGGTGAGTC+AGG - chr3_2:86516703-86516722 Msa0433890:intron 55.0%
! TCGCCGGTGTCAATTTCGGT+GGG - chr3_2:86516879-86516898 Msa0433890:intron 55.0%
! GTGGAGCGTTCCCGAGAAAA+TGG - chr3_2:86517101-86517120 Msa0433890:intron 55.0%
GTGGAGTGGATGTCTCATGC+AGG - chr3_2:86517432-86517451 Msa0433890:intron 55.0%
ATTGCACTTACAGCCGCTGG+TGG - chr3_2:86517490-86517509 Msa0433890:intron 55.0%
CGTGCTCCAACATCAGAAGC+TGG - chr3_2:86518571-86518590 Msa0433890:intron 55.0%
!! GCAGCTCTAGAAGTTGGAGG+AGG - chr3_2:86518801-86518820 Msa0433890:CDS 55.0%
TAGAAGTTGGAGGAGGGCCA+TGG - chr3_2:86518808-86518827 Msa0433890:CDS 55.0%
GGAGGAACCTCCTTGTTCGG+AGG + chr3_2:86515228-86515247 None:intergenic 60.0%
!! ATGGTGTTGGCTTGGGGCCT+TGG - chr3_2:86516823-86516842 Msa0433890:intron 60.0%
! CTCGCCGGTGTCAATTTCGG+TGG - chr3_2:86516878-86516897 Msa0433890:intron 60.0%
GGATAGAGTGGGATGGCGAG+AGG - chr3_2:86517035-86517054 Msa0433890:CDS 60.0%
ATGGCCGGTGGCCTGTCAAC+AGG - chr3_2:86516462-86516481 Msa0433890:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86514224 86519157 86514224 ID=Msa0433890;Name=Msa0433890
chr3_2 mRNA 86514224 86519157 86514224 ID=Msa0433890-mRNA-1;Parent=Msa0433890;Name=Msa0433890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=285|1|1|1|1|1|10|207|482
chr3_2 exon 86514224 86514607 86514224 ID=Msa0433890-mRNA-1:exon:25061;Parent=Msa0433890-mRNA-1
chr3_2 exon 86514703 86514852 86514703 ID=Msa0433890-mRNA-1:exon:25060;Parent=Msa0433890-mRNA-1
chr3_2 exon 86515110 86515226 86515110 ID=Msa0433890-mRNA-1:exon:25059;Parent=Msa0433890-mRNA-1
chr3_2 exon 86515820 86515927 86515820 ID=Msa0433890-mRNA-1:exon:25058;Parent=Msa0433890-mRNA-1
chr3_2 exon 86516252 86516349 86516252 ID=Msa0433890-mRNA-1:exon:25057;Parent=Msa0433890-mRNA-1
chr3_2 exon 86516898 86517067 86516898 ID=Msa0433890-mRNA-1:exon:25056;Parent=Msa0433890-mRNA-1
chr3_2 exon 86517148 86517224 86517148 ID=Msa0433890-mRNA-1:exon:25055;Parent=Msa0433890-mRNA-1
chr3_2 exon 86518130 86518209 86518130 ID=Msa0433890-mRNA-1:exon:25054;Parent=Msa0433890-mRNA-1
chr3_2 exon 86518326 86518570 86518326 ID=Msa0433890-mRNA-1:exon:25053;Parent=Msa0433890-mRNA-1
chr3_2 exon 86518646 86519157 86518646 ID=Msa0433890-mRNA-1:exon:25052;Parent=Msa0433890-mRNA-1
chr3_2 five_prime_UTR 86518873 86519157 86518873 ID=Msa0433890-mRNA-1:five_prime_utr;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86518646 86518872 86518646 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86518326 86518570 86518326 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86518130 86518209 86518130 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86517148 86517224 86517148 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86516898 86517067 86516898 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86516252 86516349 86516252 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86515820 86515927 86515820 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86515110 86515226 86515110 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86514703 86514852 86514703 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 CDS 86514431 86514607 86514431 ID=Msa0433890-mRNA-1:cds;Parent=Msa0433890-mRNA-1
chr3_2 three_prime_UTR 86514224 86514430 86514224 ID=Msa0433890-mRNA-1:three_prime_utr;Parent=Msa0433890-mRNA-1
Gene Sequence

>Msa0433890

ATGGAAACCAAGCTATTGAATCCTCCTTCTCTTATTCACTTTCCTTCCTCCTCTGTTTCTTCTTCTTCTTCTTCATCCACACGCACATTCTTCCCCTTTCATCACAACCGTTCTTTCAAACTAATCATCGCTCACAATTCACATACCGAACAACAACAATCTCAATCTTCCAAACCCATTTACTCTCCTACACCTCCCAATCGTCAACTTCGCACCCCTCATAGCGGGTATCACTTTGATGGAACTGCACGCAAATTCTTCGAGGGTTGGTACTTCAAAGTTTCCATTCCTGAAAAGAGACAAAGCTTTTGCTTTATGTATTCTGTTGAGAATCCTGCGTTTCCCAAGGAATTGACAACTTTGGAATTGGCACAATATGGACCTAGGTTTACTGGTGTTGGGGCACAAATTCTTGGTGCTGATGATAAATACATTTGCCAATATACTCCCCAATCACACAATTTCTGGGGAAGTAGGAATGAACTGATGTTGGGTAACACTTTTGCGGCTAAGCAAAATTCGAAACCTCCGAACAAGGAGGTTCCTCCTAAGGAATTTAATGATAAAGTGTTCGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCGGATTATGTAGAAACAGTAAAGACTGCTCGCTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGGTCTACACAGAAGTCAACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCCGGTGGCCTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGTGGAGCGTTCCCGAGAAAATGGTTTTGGGCTCAGTGTAATGTTTTCGAAGGTGCTAGTGGAGAAATTGCACTTACAGCCGCTGGTGGATTGAGACAAATTCCGGGACTAACTGAGACATTTGAAAATGCTGCATTGATTGGAATTCACTATGGTGGAAAGTTTTATGAATTTGTGCCATGGAATGGTGTTGTAAGCTGGGAAGTAGCTACTTGGGGTTATTGGTTTATGTCTGCAGACAACGGAAATTATGTGGTTGAATTAGAAGCAACAACAGAGGATCAAGGTACTACATTGCGTGCTCCAACATCAGAAGCTGGCCTTTCTCAAGCTTGTAAAGATACATGCTTTGGAATACTAAAATTAAAATTGTGGGAAAGAAGATATGACGGCAGCAAGGGAAAGATAATATTGGACGTGACAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGGCCATGGTTTAACACTTGGAAGGGAAAAACATCAACTCCACCTGTTCTTAGCCGTGCTATTGGATTACCGGTAGATGTAGATGGCCTCTATAATCTGTTTCCTCTGTTTAAACCACCTGGCTTGTAG

Protein sequence

>Msa0433890

METKLLNPPSLIHFPSSSVSSSSSSSTRTFFPFHHNRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFPKELTTLELAQYGPRFTGVGAQILGADDKYICQYTPQSHNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVFEGFQVTPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDQGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAIGLPVDVDGLYNLFPLFKPPGL*