AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364010 MtrunA17_Chr3g0103441 99.528 212 1 0 12 223 1 212 1.35e-161 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364010 AT5G19855.1 54.091 220 82 3 1 219 1 202 1.09e-81 243
Msa0364010 AT5G19855.2 45.679 162 69 3 1 161 1 144 1.81e-43 144

Find 78 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTAACCTTTATGCTAAA+TGG 0.110147 3_1:-56681224 Msa0364010:CDS
TGAGATGAAGGATTTATAAT+TGG 0.183394 3_1:-56680781 Msa0364010:three_prime_UTR
TTATAAAACCACGTATATTT+AGG 0.215191 3_1:+56682654 None:intergenic
AGTAGGTATTTATTTAATAA+AGG 0.246353 3_1:+56683949 None:intergenic
TTGGACCTCAATAATTTATA+TGG 0.249901 3_1:-56684136 Msa0364010:five_prime_UTR
ATGTGTCAATTTCCCGTAAC+AGG 0.276020 3_1:-56680880 Msa0364010:three_prime_UTR
TAATGGACTCTGTATTTAAA+AGG 0.281463 3_1:+56680816 None:intergenic
TTGACTCTCCATTCCCTTCC+AGG 0.282181 3_1:+56683570 None:intergenic
GCGCGGCGGCGGAAGAACTA+TGG 0.291206 3_1:-56683616 Msa0364010:CDS
GTAGGAGCAATATCTGTTAT+TGG 0.302873 3_1:-56683774 Msa0364010:CDS
TCTCAAACAATTCAATATAA+TGG 0.320527 3_1:+56680799 None:intergenic
CCTTGACCCATTTAGCATAA+AGG 0.329549 3_1:+56681217 None:intergenic
TTACGGGAAATTGACACATT+TGG 0.338762 3_1:+56680884 None:intergenic
GTAGGTATTTATTTAATAAA+GGG 0.348053 3_1:+56683950 None:intergenic
GAGATGAAGGATTTATAATT+GGG 0.361430 3_1:-56680780 Msa0364010:three_prime_UTR
TATTGAATTGTTTGAGATGA+AGG 0.361825 3_1:-56680793 Msa0364010:three_prime_UTR
TTTGATGGGAAAGAAGCATT+TGG 0.380847 3_1:-56683643 Msa0364010:CDS
GACAGCAGCTCAGAATTAAT+TGG 0.381941 3_1:-56681003 Msa0364010:CDS
TATTAAATAAATACCTACTT+AGG 0.392472 3_1:-56683945 Msa0364010:five_prime_UTR
AAATCTGGTAATCCTGTTAC+GGG 0.397622 3_1:+56680868 None:intergenic
GCTTAACCTTTATGCTAAAT+GGG 0.410431 3_1:-56681223 Msa0364010:CDS
GAGGTCCAAAATTGTCCAAC+AGG 0.410809 3_1:+56684150 None:intergenic
TTGAGATTCATATTAGTTGT+TGG 0.412533 3_1:+56683699 None:intergenic
TGTTATTGGTTCATCAATGA+TGG 0.412805 3_1:-56683760 Msa0364010:CDS
GAAGGTTGAAGAAGAGAAAG+AGG 0.415633 3_1:+56684031 None:intergenic
TAAATCTGGTAATCCTGTTA+CGG 0.416228 3_1:+56680867 None:intergenic
AGTTGGAACTTGTGCTGTTA+CGG 0.423818 3_1:+56683983 None:intergenic
CGCGGCGGCGGAAGAACTAT+GGG 0.427517 3_1:-56683615 Msa0364010:CDS
AGTTGGTATTGTTGATACTT+TGG 0.428335 3_1:-56683817 Msa0364010:five_prime_UTR
CAATTTACATAATATAAATC+TGG 0.435763 3_1:+56680853 None:intergenic
GTTACCATTGTTAGTGAGCT+TGG 0.439389 3_1:-56683504 Msa0364010:CDS
GACTCATGGAGACAGTAATA+TGG 0.445142 3_1:-56681035 Msa0364010:CDS
CTCTTGAAAACGTACACAAA+TGG 0.447892 3_1:+56683855 None:intergenic
AGAAAGAGGAAGCAGTTTGA+AGG 0.452121 3_1:+56684045 None:intergenic
ACTAATATGAATCTCAAGAT+TGG 0.454557 3_1:-56683693 Msa0364010:CDS
AAAGTAAACCAAAGAAAAGA+AGG 0.466036 3_1:+56684077 None:intergenic
AGAAGCAACGCAGTAATGAT+AGG 0.467537 3_1:-56683530 Msa0364010:CDS
CGGATGCAGAGTTTGTTTGA+AGG 0.480803 3_1:+56684013 None:intergenic
TTCTGAGCTGCTGTCATCTG+AGG 0.484742 3_1:+56681011 None:intergenic
TCAAATATCAGATGAAAACT+TGG 0.498143 3_1:-56681073 Msa0364010:CDS
ATGAATCTCAAGATTGGTTG+TGG 0.515787 3_1:-56683687 Msa0364010:CDS
CTAGGAATCAAACAAAAGGT+TGG 0.519851 3_1:+56680948 None:intergenic
TAGACTAGGAATCAAACAAA+AGG 0.523858 3_1:+56680944 None:intergenic
AGAGTACCTTCCCAAGCAAT+CGG 0.524539 3_1:+56681872 None:intergenic
TGAGCTTGGTGGTCAATATG+AGG 0.525773 3_1:-56683490 Msa0364010:CDS
GTTAACCATATAAATTATTG+AGG 0.525850 3_1:+56684131 None:intergenic
TAAAACCACGTATATTTAGG+TGG 0.529191 3_1:+56682657 None:intergenic
CATTTGGAAAAGCGCGGCGG+CGG 0.533131 3_1:-56683627 Msa0364010:CDS
GTTGATGAGGGAACGACTCA+TGG 0.541090 3_1:-56681049 Msa0364010:CDS
CTGAAAGAGTGATGTTGACT+CGG 0.544416 3_1:-56681245 Msa0364010:CDS
ATGAAAACTTGGAGTTGATG+AGG 0.546304 3_1:-56681062 Msa0364010:CDS
GCTCAACTATTTCACGTACA+AGG 0.554693 3_1:-56682718 Msa0364010:CDS
ACCATTGTTAGTGAGCTTGG+TGG 0.561493 3_1:-56683501 Msa0364010:CDS
GAAAGAGGAAGCAGTTTGAA+GGG 0.569048 3_1:+56684046 None:intergenic
CACTGGTCCATGTTTGTGTG+TGG 0.571186 3_1:-56683730 Msa0364010:CDS
TGAAAACTTGGAGTTGATGA+GGG 0.575874 3_1:-56681061 Msa0364010:CDS
TCTGAGCTGCTGTCATCTGA+GGG 0.576725 3_1:+56681012 None:intergenic
AAAACCACGTATATTTAGGT+GGG 0.578910 3_1:+56682658 None:intergenic
GAAGCAGTTTGAAGGGTGCA+AGG 0.581441 3_1:+56684053 None:intergenic
ACAAAAGGTTGGAAACAGAA+AGG 0.583898 3_1:+56680959 None:intergenic
TTACTGATCCTGGAAGGGAA+TGG 0.584500 3_1:-56683578 Msa0364010:CDS
CCTTTATGCTAAATGGGTCA+AGG 0.586094 3_1:-56681217 Msa0364010:intron
CATTTGGAAACAATACATGT+TGG 0.587080 3_1:+56680900 None:intergenic
GTATCAAACAAACCACAAGA+TGG 0.596691 3_1:-56681907 Msa0364010:CDS
AGTGCATCCACACACAAACA+TGG 0.606637 3_1:+56683723 None:intergenic
ATACTTTGGATTTGTGAGAG+AGG 0.615587 3_1:-56683803 Msa0364010:five_prime_UTR
TTGTGAGAGAGGAACATGGT+AGG 0.618504 3_1:-56683792 Msa0364010:exon
TCAATGATGGACTCACACAC+TGG 0.620604 3_1:-56683747 Msa0364010:CDS
ACCACCAAGCTCACTAACAA+TGG 0.632085 3_1:+56683500 None:intergenic
ATAAAGTTTACACCTAGACT+AGG 0.637143 3_1:+56680930 None:intergenic
TGTGCTGTTACGGTCAAAGA+CGG 0.638016 3_1:+56683993 None:intergenic
AAGTAAACCAAAGAAAAGAA+GGG 0.639453 3_1:+56684078 None:intergenic
GGATTTGTGAGAGAGGAACA+TGG 0.670016 3_1:-56683796 Msa0364010:exon
AAGAAGCATTTGGAAAAGCG+CGG 0.684459 3_1:-56683633 Msa0364010:CDS
ATTTCACGTACAAGGCTGTG+AGG 0.686265 3_1:-56682710 Msa0364010:CDS
AAGCATTTGGAAAAGCGCGG+CGG 0.723101 3_1:-56683630 Msa0364010:CDS
GCGGCGGCGGAAGAACTATG+GGG 0.724394 3_1:-56683614 Msa0364010:CDS
TGAACCCACCTAAATATACG+TGG 0.753733 3_1:-56682662 Msa0364010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATTTAAAATCTTATT+AGG - chr3_1:56681652-56681671 Msa0364010:intron 10.0%
!!! TTTTATTTAAATTTTCCTGT+TGG - chr3_1:56680759-56680778 Msa0364010:three_prime_UTR 15.0%
!! GTAGGTATTTATTTAATAAA+GGG + chr3_1:56680977-56680996 None:intergenic 15.0%
!! AGTAGGTATTTATTTAATAA+AGG + chr3_1:56680978-56680997 None:intergenic 15.0%
!! TATTAAATAAATACCTACTT+AGG - chr3_1:56680979-56680998 Msa0364010:three_prime_UTR 15.0%
!!! AATAGAAAACATAATTTTCA+AGG + chr3_1:56682338-56682357 None:intergenic 15.0%
!!! AAGATTATTGATAATCAATT+TGG + chr3_1:56682573-56682592 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr3_1:56683313-56683332 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+CGG - chr3_1:56683336-56683355 Msa0364010:intron 15.0%
!! TTCAAATTCAAATGTATTAT+TGG + chr3_1:56683593-56683612 None:intergenic 15.0%
!! AGAATAATATTGTTAAACAA+TGG + chr3_1:56683797-56683816 None:intergenic 15.0%
!! CAATTTACATAATATAAATC+TGG + chr3_1:56684074-56684093 None:intergenic 15.0%
!! GTTAACCATATAAATTATTG+AGG + chr3_1:56680796-56680815 None:intergenic 20.0%
!!! GCTTATATTTTTGTTTTGTT+AGG - chr3_1:56681003-56681022 Msa0364010:CDS 20.0%
!!! TAACATGATCTAAATTTTGT+TGG - chr3_1:56681481-56681500 Msa0364010:intron 20.0%
!!! AACATTTTTTGAGTTAAGAT+TGG - chr3_1:56681612-56681631 Msa0364010:intron 20.0%
!! AAAAATTGAGGAAATACAAA+AGG + chr3_1:56681842-56681861 None:intergenic 20.0%
!! CATGTAAAGATTAAAAATTG+AGG + chr3_1:56681854-56681873 None:intergenic 20.0%
!! TTATAAAACCACGTATATTT+AGG + chr3_1:56682273-56682292 None:intergenic 20.0%
!! ATTTGTCCTTAAATCATATT+AGG - chr3_1:56682833-56682852 Msa0364010:intron 20.0%
!!! AACATCAACATTTTTCTTAA+AGG + chr3_1:56682864-56682883 None:intergenic 20.0%
!! TCTAAATAATTACCATACTT+TGG + chr3_1:56682955-56682974 None:intergenic 20.0%
!! TATGAAATGATTAATAACTG+GGG + chr3_1:56683088-56683107 None:intergenic 20.0%
!! GTATGAAATGATTAATAACT+GGG + chr3_1:56683089-56683108 None:intergenic 20.0%
!! TGTATGAAATGATTAATAAC+TGG + chr3_1:56683090-56683109 None:intergenic 20.0%
!!! CATTTTGAAACAAACTTTTT+TGG + chr3_1:56683210-56683229 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr3_1:56683327-56683346 Msa0364010:intron 20.0%
!! GAATTATCCTTATTAACTAT+TGG + chr3_1:56683337-56683356 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr3_1:56683370-56683389 None:intergenic 20.0%
!! CAAGTAAATACAAATATTCA+TGG + chr3_1:56683639-56683658 None:intergenic 20.0%
!! AATATTTGTATTTACTTGAC+AGG - chr3_1:56683641-56683660 Msa0364010:CDS 20.0%
!! TCTCAAACAATTCAATATAA+TGG + chr3_1:56684128-56684147 None:intergenic 20.0%
! TTGGACCTCAATAATTTATA+TGG - chr3_1:56680788-56680807 Msa0364010:three_prime_UTR 25.0%
! AAGTAAACCAAAGAAAAGAA+GGG + chr3_1:56680849-56680868 None:intergenic 25.0%
! AAAGTAAACCAAAGAAAAGA+AGG + chr3_1:56680850-56680869 None:intergenic 25.0%
! AAAAATATAAGCACCTAAGT+AGG + chr3_1:56680995-56681014 None:intergenic 25.0%
! TTGAGATTCATATTAGTTGT+TGG + chr3_1:56681228-56681247 None:intergenic 25.0%
! ACTAATATGAATCTCAAGAT+TGG - chr3_1:56681231-56681250 Msa0364010:CDS 25.0%
! ATAGTTATACCATCAATATC+AGG + chr3_1:56681695-56681714 None:intergenic 25.0%
!! TAGGACATTCATATTTCTAA+TGG + chr3_1:56681947-56681966 None:intergenic 25.0%
! AGAAATATGAATGTCCTAAT+TGG - chr3_1:56681949-56681968 Msa0364010:intron 25.0%
! TTCATAACATAGCAACAAAA+AGG + chr3_1:56682134-56682153 None:intergenic 25.0%
! GTAAGTGAATTCTTTATTCT+AGG - chr3_1:56682293-56682312 Msa0364010:intron 25.0%
!!! AATTTGGTTTTTTGTCTAAG+AGG + chr3_1:56682557-56682576 None:intergenic 25.0%
!! GAGCTCATAATTTTGTTAAA+AGG - chr3_1:56682718-56682737 Msa0364010:CDS 25.0%
! GTGTAACCTAATATGATTTA+AGG + chr3_1:56682842-56682861 None:intergenic 25.0%
! AGAAAAATGTTGATGTTGTT+AGG - chr3_1:56682867-56682886 Msa0364010:intron 25.0%
!! ACTTTTACAATTCCAAAGTA+TGG - chr3_1:56682940-56682959 Msa0364010:intron 25.0%
!!! ATTGATGTTTTGTTCTATGT+TGG - chr3_1:56682984-56683003 Msa0364010:intron 25.0%
! GTCTTATGAATGGAAAAATT+AGG + chr3_1:56683542-56683561 None:intergenic 25.0%
! ACATGTAAAATAATTCGTGA+AGG - chr3_1:56683765-56683784 Msa0364010:CDS 25.0%
! TCAAATATCAGATGAAAACT+TGG - chr3_1:56683851-56683870 Msa0364010:five_prime_UTR 25.0%
!!! TAATGGACTCTGTATTTAAA+AGG + chr3_1:56684111-56684130 None:intergenic 25.0%
!! TATTGAATTGTTTGAGATGA+AGG - chr3_1:56684131-56684150 Msa0364010:five_prime_UTR 25.0%
! TGAGATGAAGGATTTATAAT+TGG - chr3_1:56684143-56684162 Msa0364010:five_prime_UTR 25.0%
! GAGATGAAGGATTTATAATT+GGG - chr3_1:56684144-56684163 Msa0364010:five_prime_UTR 25.0%
! ATTTTCCTGTTGGACAATTT+TGG - chr3_1:56680769-56680788 Msa0364010:three_prime_UTR 30.0%
!!! AGGGTGTGAGATTTTTTTAA+GGG + chr3_1:56680830-56680849 None:intergenic 30.0%
!!! AAGGGTGTGAGATTTTTTTA+AGG + chr3_1:56680831-56680850 None:intergenic 30.0%
! TAAAGGGTATGCAAAAAAGT+TGG + chr3_1:56680961-56680980 None:intergenic 30.0%
! AGTTGTGATTTTCTTGTAGT+TGG - chr3_1:56681090-56681109 Msa0364010:CDS 30.0%
! AGTTGGTATTGTTGATACTT+TGG - chr3_1:56681107-56681126 Msa0364010:intron 30.0%
!! TGTTATTGGTTCATCAATGA+TGG - chr3_1:56681164-56681183 Msa0364010:intron 30.0%
! TGTTTTGTGGAAGAATTTGA+TGG - chr3_1:56681266-56681285 Msa0364010:intron 30.0%
! GTTTTGTGGAAGAATTTGAT+GGG - chr3_1:56681267-56681286 Msa0364010:intron 30.0%
!! CACTTTTGAGGATGTTAAAA+CGG - chr3_1:56681458-56681477 Msa0364010:intron 30.0%
TGTTACAAACATTGAATCAG+AGG + chr3_1:56681533-56681552 None:intergenic 30.0%
GAATCTAAACCTGATATTGA+TGG - chr3_1:56681683-56681702 Msa0364010:intron 30.0%
AAATGATCATATTGAACAGC+AGG + chr3_1:56681977-56681996 None:intergenic 30.0%
AGCTCTGTAATATGAACTAT+AGG + chr3_1:56682015-56682034 None:intergenic 30.0%
AAAACCACGTATATTTAGGT+GGG + chr3_1:56682269-56682288 None:intergenic 30.0%
TAAAACCACGTATATTTAGG+TGG + chr3_1:56682270-56682289 None:intergenic 30.0%
! ATGTTTTCTATTTAGACGCA+TGG - chr3_1:56682346-56682365 Msa0364010:intron 30.0%
! GTTTTCCACAAAATCTTTCT+AGG - chr3_1:56682429-56682448 Msa0364010:intron 30.0%
ACTTAGATTGCTTTCATGAT+CGG - chr3_1:56682531-56682550 Msa0364010:intron 30.0%
! CAAAATTGCTCAATTTTGTC+TGG + chr3_1:56682629-56682648 None:intergenic 30.0%
CTTTCTTGTTCTTATAGATC+AGG - chr3_1:56682656-56682675 Msa0364010:CDS 30.0%
! ATAAAACGTTTTCCATCTTG+TGG + chr3_1:56683032-56683051 None:intergenic 30.0%
! AATGTAACTTTTGGATACGA+GGG + chr3_1:56683485-56683504 None:intergenic 30.0%
! ACAAGATCCAATGTAACTTT+TGG + chr3_1:56683494-56683513 None:intergenic 30.0%
GCTTAACCTTTATGCTAAAT+GGG - chr3_1:56683701-56683720 Msa0364010:CDS 30.0%
! ATGCAGTGAATTTTGAATTC+CGG + chr3_1:56683735-56683754 None:intergenic 30.0%
TAGACTAGGAATCAAACAAA+AGG + chr3_1:56683983-56684002 None:intergenic 30.0%
!! TTTTGTTTGATTCCTAGTCT+AGG - chr3_1:56683982-56684001 Msa0364010:five_prime_UTR 30.0%
ATAAAGTTTACACCTAGACT+AGG + chr3_1:56683997-56684016 None:intergenic 30.0%
CATTTGGAAACAATACATGT+TGG + chr3_1:56684027-56684046 None:intergenic 30.0%
TAAATCTGGTAATCCTGTTA+CGG + chr3_1:56684060-56684079 None:intergenic 30.0%
!!! GATTTTTTTAAGGGTGTGTG+TGG + chr3_1:56680821-56680840 None:intergenic 35.0%
ACGTACACAAATGGAAAAAG+TGG + chr3_1:56681063-56681082 None:intergenic 35.0%
CTCTTGAAAACGTACACAAA+TGG + chr3_1:56681072-56681091 None:intergenic 35.0%
ATACTTTGGATTTGTGAGAG+AGG - chr3_1:56681121-56681140 Msa0364010:intron 35.0%
GTAGGAGCAATATCTGTTAT+TGG - chr3_1:56681150-56681169 Msa0364010:intron 35.0%
! ATGAATCTCAAGATTGGTTG+TGG - chr3_1:56681237-56681256 Msa0364010:CDS 35.0%
!! TTTGATGGGAAAGAAGCATT+TGG - chr3_1:56681281-56681300 Msa0364010:intron 35.0%
! AGTAGTTCTTTTACTGATCC+TGG - chr3_1:56681336-56681355 Msa0364010:intron 35.0%
! TTCTTTTACTGATCCTGGAA+GGG - chr3_1:56681341-56681360 Msa0364010:intron 35.0%
! TCAATATGAGGACACTTTTG+AGG - chr3_1:56681446-56681465 Msa0364010:intron 35.0%
CAACCTATTAATCACTGACA+CGG - chr3_1:56681735-56681754 Msa0364010:intron 35.0%
TAGCAACAAAAAGGTGATAG+TGG + chr3_1:56682125-56682144 None:intergenic 35.0%
ATCCACGATGACTCAAATAT+AGG - chr3_1:56682385-56682404 Msa0364010:intron 35.0%
TTCCTATATTTGAGTCATCG+TGG + chr3_1:56682390-56682409 None:intergenic 35.0%
! AAAGATTTTGTGGAAAACCC+TGG + chr3_1:56682427-56682446 None:intergenic 35.0%
! TAGTGCCTAGAAAGATTTTG+TGG + chr3_1:56682437-56682456 None:intergenic 35.0%
GGATAAAAAAGACTTGCACT+TGG + chr3_1:56682488-56682507 None:intergenic 35.0%
TATGAGCTCAAAGCAAATGT+CGG + chr3_1:56682707-56682726 None:intergenic 35.0%
ATTGAAGTGTGGAAAAGTCT+TGG + chr3_1:56682771-56682790 None:intergenic 35.0%
! AAGACTTTTCCACACTTCAA+TGG - chr3_1:56682770-56682789 Msa0364010:intron 35.0%
! AGACTTTTCCACACTTCAAT+GGG - chr3_1:56682771-56682790 Msa0364010:intron 35.0%
GTATCAAACAAACCACAAGA+TGG - chr3_1:56683017-56683036 Msa0364010:intron 35.0%
! AAACGTTTTATCCGATTGCT+TGG - chr3_1:56683041-56683060 Msa0364010:intron 35.0%
! AACGTTTTATCCGATTGCTT+GGG - chr3_1:56683042-56683061 Msa0364010:intron 35.0%
!!! GACACTCATTTTGAAACGAA+GGG + chr3_1:56683180-56683199 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr3_1:56683284-56683303 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr3_1:56683288-56683307 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + chr3_1:56683185-56683204 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr3_1:56683419-56683438 Msa0364010:intron 35.0%
GATACGAGGGTAAAACAAAA+TGG + chr3_1:56683472-56683491 None:intergenic 35.0%
! CAATGTAACTTTTGGATACG+AGG + chr3_1:56683486-56683505 None:intergenic 35.0%
CTCGTATCCAAAAGTTACAT+TGG - chr3_1:56683484-56683503 Msa0364010:CDS 35.0%
! TCAGAATCGAGTCTTATGAA+TGG + chr3_1:56683552-56683571 None:intergenic 35.0%
GGCTTAACCTTTATGCTAAA+TGG - chr3_1:56683700-56683719 Msa0364010:CDS 35.0%
!! ATGAAAACTTGGAGTTGATG+AGG - chr3_1:56683862-56683881 Msa0364010:five_prime_UTR 35.0%
!! TGAAAACTTGGAGTTGATGA+GGG - chr3_1:56683863-56683882 Msa0364010:five_prime_UTR 35.0%
ACAAAAGGTTGGAAACAGAA+AGG + chr3_1:56683968-56683987 None:intergenic 35.0%
CTAGGAATCAAACAAAAGGT+TGG + chr3_1:56683979-56683998 None:intergenic 35.0%
TTACGGGAAATTGACACATT+TGG + chr3_1:56684043-56684062 None:intergenic 35.0%
AAATCTGGTAATCCTGTTAC+GGG + chr3_1:56684059-56684078 None:intergenic 35.0%
! TCTCACACCCTTCTTTTCTT+TGG - chr3_1:56680839-56680858 Msa0364010:three_prime_UTR 40.0%
GAAAGAGGAAGCAGTTTGAA+GGG + chr3_1:56680881-56680900 None:intergenic 40.0%
AGAAAGAGGAAGCAGTTTGA+AGG + chr3_1:56680882-56680901 None:intergenic 40.0%
GAAGGTTGAAGAAGAGAAAG+AGG + chr3_1:56680896-56680915 None:intergenic 40.0%
! AGTTGGAACTTGTGCTGTTA+CGG + chr3_1:56680944-56680963 None:intergenic 40.0%
!!! GTTGTGGAGATGTTGTTTTG+TGG - chr3_1:56681253-56681272 Msa0364010:CDS 40.0%
!! AAGAAGCATTTGGAAAAGCG+CGG - chr3_1:56681291-56681310 Msa0364010:intron 40.0%
! GTTCTTTTACTGATCCTGGA+AGG - chr3_1:56681340-56681359 Msa0364010:intron 40.0%
AGAAGCAACGCAGTAATGAT+AGG - chr3_1:56681394-56681413 Msa0364010:intron 40.0%
GTTACCATTGTTAGTGAGCT+TGG - chr3_1:56681420-56681439 Msa0364010:intron 40.0%
TGTCCGTGTCAGTGATTAAT+AGG + chr3_1:56681741-56681760 None:intergenic 40.0%
GCTCAACTATTTCACGTACA+AGG - chr3_1:56682206-56682225 Msa0364010:intron 40.0%
TGAACCCACCTAAATATACG+TGG - chr3_1:56682262-56682281 Msa0364010:intron 40.0%
ATCTAAGTCATGTGATCGAG+CGG + chr3_1:56682519-56682538 None:intergenic 40.0%
ATGAGCTCAAAGCAAATGTC+GGG + chr3_1:56682706-56682725 None:intergenic 40.0%
! TTTTCCACACTTCAATGGGA+AGG - chr3_1:56682775-56682794 Msa0364010:intron 40.0%
CTGAGATATACCAATGCAGT+CGG + chr3_1:56682810-56682829 None:intergenic 40.0%
! TTTTATCCGATTGCTTGGGA+AGG - chr3_1:56683046-56683065 Msa0364010:intron 40.0%
!!! CGACACTCATTTTGAAACGA+AGG + chr3_1:56683181-56683200 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr3_1:56683285-56683304 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_1:56683423-56683442 Msa0364010:intron 40.0%
TGGATCTTGTGAATTCGAGT+CGG - chr3_1:56683504-56683523 Msa0364010:CDS 40.0%
! CTGAAAGAGTGATGTTGACT+CGG - chr3_1:56683679-56683698 Msa0364010:CDS 40.0%
CCTTGACCCATTTAGCATAA+AGG + chr3_1:56683710-56683729 None:intergenic 40.0%
CCTTTATGCTAAATGGGTCA+AGG - chr3_1:56683707-56683726 Msa0364010:CDS 40.0%
GACTCATGGAGACAGTAATA+TGG - chr3_1:56683889-56683908 Msa0364010:five_prime_UTR 40.0%
GACAGCAGCTCAGAATTAAT+TGG - chr3_1:56683921-56683940 Msa0364010:five_prime_UTR 40.0%
ATGTGTCAATTTCCCGTAAC+AGG - chr3_1:56684044-56684063 Msa0364010:five_prime_UTR 40.0%
GAGGTCCAAAATTGTCCAAC+AGG + chr3_1:56680777-56680796 None:intergenic 45.0%
! CGGATGCAGAGTTTGTTTGA+AGG + chr3_1:56680914-56680933 None:intergenic 45.0%
! TGTGCTGTTACGGTCAAAGA+CGG + chr3_1:56680934-56680953 None:intergenic 45.0%
GGATTTGTGAGAGAGGAACA+TGG - chr3_1:56681128-56681147 Msa0364010:intron 45.0%
TTGTGAGAGAGGAACATGGT+AGG - chr3_1:56681132-56681151 Msa0364010:intron 45.0%
!! TCAATGATGGACTCACACAC+TGG - chr3_1:56681177-56681196 Msa0364010:intron 45.0%
AGTGCATCCACACACAAACA+TGG + chr3_1:56681204-56681223 None:intergenic 45.0%
TTACTGATCCTGGAAGGGAA+TGG - chr3_1:56681346-56681365 Msa0364010:intron 45.0%
ACCATTGTTAGTGAGCTTGG+TGG - chr3_1:56681423-56681442 Msa0364010:intron 45.0%
ACCACCAAGCTCACTAACAA+TGG + chr3_1:56681427-56681446 None:intergenic 45.0%
! TGAGCTTGGTGGTCAATATG+AGG - chr3_1:56681434-56681453 Msa0364010:intron 45.0%
CACCTTATACGACACTGACA+CGG - chr3_1:56681765-56681784 Msa0364010:intron 45.0%
ATCCGTGTCAGTGTCGTATA+AGG + chr3_1:56681770-56681789 None:intergenic 45.0%
TTGAACAGCAGGCTCCAATT+AGG + chr3_1:56681966-56681985 None:intergenic 45.0%
ATTTCACGTACAAGGCTGTG+AGG - chr3_1:56682214-56682233 Msa0364010:intron 45.0%
GAAAACCCCTTTCTTCTCCA+GGG - chr3_1:56682407-56682426 Msa0364010:intron 45.0%
GAAAACCCTGGAGAAGAAAG+GGG + chr3_1:56682415-56682434 None:intergenic 45.0%
GGAAAACCCTGGAGAAGAAA+GGG + chr3_1:56682416-56682435 None:intergenic 45.0%
TGGAAAACCCTGGAGAAGAA+AGG + chr3_1:56682417-56682436 None:intergenic 45.0%
TGTGATCGAGCGGAATCAAA+TGG + chr3_1:56682509-56682528 None:intergenic 45.0%
TTGTCTGGCGAGTGATTGAA+CGG + chr3_1:56682614-56682633 None:intergenic 45.0%
AAGTCTTGGAGTCGAGACAT+TGG + chr3_1:56682757-56682776 None:intergenic 45.0%
ACAACCTTCCCATTGAAGTG+TGG + chr3_1:56682782-56682801 None:intergenic 45.0%
! AGAGTACCTTCCCAAGCAAT+CGG + chr3_1:56683055-56683074 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_1:56683422-56683441 Msa0364010:intron 45.0%
! TGAATTCGAGTCGGTTCAAG+TGG - chr3_1:56683513-56683532 Msa0364010:CDS 45.0%
TGCTAAATGGGTCAAGGTAC+CGG - chr3_1:56683713-56683732 Msa0364010:CDS 45.0%
!!! TTTTATATTAAATTAGAATA+TGG - chr3_1:56682082-56682101 Msa0364010:intron 5.0%
! GAAGCAGTTTGAAGGGTGCA+AGG + chr3_1:56680874-56680893 None:intergenic 50.0%
CACTGGTCCATGTTTGTGTG+TGG - chr3_1:56681194-56681213 Msa0364010:intron 50.0%
! AAGCATTTGGAAAAGCGCGG+CGG - chr3_1:56681294-56681313 Msa0364010:intron 50.0%
TTGACTCTCCATTCCCTTCC+AGG + chr3_1:56681357-56681376 None:intergenic 50.0%
!!! GACGCATGGCAAGAGTGTTT+TGG - chr3_1:56682360-56682379 Msa0364010:intron 50.0%
GGAAAACCCCTTTCTTCTCC+AGG - chr3_1:56682406-56682425 Msa0364010:intron 50.0%
GTTGTTTGAGCCGACTGCAT+TGG - chr3_1:56682797-56682816 Msa0364010:intron 50.0%
! GTTGATGAGGGAACGACTCA+TGG - chr3_1:56683875-56683894 Msa0364010:five_prime_UTR 50.0%
TCTGAGCTGCTGTCATCTGA+GGG + chr3_1:56683915-56683934 None:intergenic 50.0%
TTCTGAGCTGCTGTCATCTG+AGG + chr3_1:56683916-56683935 None:intergenic 50.0%
! CATTTGGAAAAGCGCGGCGG+CGG - chr3_1:56681297-56681316 Msa0364010:intron 60.0%
CGCGGCGGCGGAAGAACTAT+GGG - chr3_1:56681309-56681328 Msa0364010:intron 65.0%
GCGGCGGCGGAAGAACTATG+GGG - chr3_1:56681310-56681329 Msa0364010:intron 65.0%
GCGCGGCGGCGGAAGAACTA+TGG - chr3_1:56681308-56681327 Msa0364010:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56680745 56684201 56680745 ID=Msa0364010;Name=Msa0364010
chr3_1 mRNA 56680745 56684201 56680745 ID=Msa0364010-mRNA-1;Parent=Msa0364010;Name=Msa0364010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=402|1|1|1|1|1|5|254|223
chr3_1 exon 56680745 56681121 56680745 ID=Msa0364010-mRNA-1:exon:10527;Parent=Msa0364010-mRNA-1
chr3_1 exon 56681218 56681283 56681218 ID=Msa0364010-mRNA-1:exon:10526;Parent=Msa0364010-mRNA-1
chr3_1 exon 56681879 56681936 56681879 ID=Msa0364010-mRNA-1:exon:10525;Parent=Msa0364010-mRNA-1
chr3_1 exon 56682654 56682745 56682654 ID=Msa0364010-mRNA-1:exon:10524;Parent=Msa0364010-mRNA-1
chr3_1 exon 56683467 56684201 56683467 ID=Msa0364010-mRNA-1:exon:10523;Parent=Msa0364010-mRNA-1
chr3_1 five_prime_UTR 56683800 56684201 56683800 ID=Msa0364010-mRNA-1:five_prime_utr;Parent=Msa0364010-mRNA-1
chr3_1 CDS 56683467 56683799 56683467 ID=Msa0364010-mRNA-1:cds;Parent=Msa0364010-mRNA-1
chr3_1 CDS 56682654 56682745 56682654 ID=Msa0364010-mRNA-1:cds;Parent=Msa0364010-mRNA-1
chr3_1 CDS 56681879 56681936 56681879 ID=Msa0364010-mRNA-1:cds;Parent=Msa0364010-mRNA-1
chr3_1 CDS 56681218 56681283 56681218 ID=Msa0364010-mRNA-1:cds;Parent=Msa0364010-mRNA-1
chr3_1 CDS 56680999 56681121 56680999 ID=Msa0364010-mRNA-1:cds;Parent=Msa0364010-mRNA-1
chr3_1 three_prime_UTR 56680745 56680998 56680745 ID=Msa0364010-mRNA-1:three_prime_utr;Parent=Msa0364010-mRNA-1
Gene Sequence

>Msa0364010

ATGGTAGGAGCAATATCTGTTATTGGTTCATCAATGATGGACTCACACACTGGTCCATGTTTGTGTGTGGATGCACTTCCAACAACTAATATGAATCTCAAGATTGGTTGTGGAGATGTTGTTTTGTGGAAGAATTTGATGGGAAAGAAGCATTTGGAAAAGCGCGGCGGCGGAAGAACTATGGGGTTGAGTAGTTCTTTTACTGATCCTGGAAGGGAATGGAGAGTCAAGTTTAGCAGAAGCTGTAAGAAGCAACGCAGTAATGATAGGAGAGTTACCATTGTTAGTGAGCTTGGTGGTCAATATGAGGACACTTTTGAGGATGTTAAAACGCAAATGCTCAACTATTTCACGTACAAGGCTGTGAGGACTGTTATGCAGCAGCTGTATGAGATGAACCCACCTAAATATACGTGGTTTTATAACTTTGTTGTATCAAACAAACCACAAGATGGAAAACGTTTTATCCGATTGCTTGGGAAGGAACAACAAGAGCTTGCTGAAAGAGTGATGTTGACTCGGCTTAACCTTTATGCTAAATGGGTCAAGAAATGTAATCATGCTGAGATATATAATCAAATATCAGATGAAAACTTGGAGTTGATGAGGGAACGACTCATGGAGACAGTAATATGGCCCTCAGATGACAGCAGCTCAGAATTAATTGGCTGA

Protein sequence

>Msa0364010

MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRTMGLSSSFTDPGREWRVKFSRSCKKQRSNDRRVTIVSELGGQYEDTFEDVKTQMLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQELAERVMLTRLNLYAKWVKKCNHAEIYNQISDENLELMRERLMETVIWPSDDSSSELIG*