AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090650 MtrunA17_Chr1g0210681 98.765 243 3 0 1 243 1 243 2.36e-178 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTCTTTGTTTGTTATT+TGG 0.213171 1_2:+72704699 None:intergenic
ATTTCCCCGATCTCGATTTC+AGG 0.229683 1_2:-72704679 Msa0090650:five_prime_UTR
GGTATGCGAAGATTAGTAAT+AGG 0.261485 1_2:+72704538 None:intergenic
ATCGATCTTCCCTTACTTCT+CGG 0.290746 1_2:-72704426 Msa0090650:CDS
ATATTGAATTGGCTGTTAAA+TGG 0.303433 1_2:-72704110 Msa0090650:CDS
TTAATCTTGAACCTATTATC+TGG 0.318588 1_2:-72701849 Msa0090650:three_prime_UTR
CTTATAGATGTGTTCCTACT+TGG 0.325100 1_2:-72704158 Msa0090650:CDS
GCAATCTGTAACCAGATAAT+AGG 0.326793 1_2:+72701838 None:intergenic
TAGTCAATGAATCACTTCTT+TGG 0.328386 1_2:+72701992 None:intergenic
TTACTGCCATATAACTTTGC+AGG 0.331845 1_2:+72701563 None:intergenic
TTAAATGGGCGCTTCGTAAG+AGG 0.341862 1_2:-72704095 Msa0090650:CDS
ATGAATCACTTCTTTGGCTT+CGG 0.351012 1_2:+72701998 None:intergenic
TGTCTGGAAAACCATCAAAC+TGG 0.367415 1_2:+72701947 None:intergenic
GAGATGCCTGCAAAGTTATA+TGG 0.378395 1_2:-72701569 Msa0090650:three_prime_UTR
CCATCATGAACCTTACTATA+AGG 0.393189 1_2:+72704294 None:intergenic
TGGTGGTTGGCCTTCTTCGC+CGG 0.404259 1_2:-72704262 Msa0090650:CDS
GTATGCGAAGATTAGTAATA+GGG 0.406202 1_2:+72704539 None:intergenic
TCAACCTGGTGATATTGAAT+TGG 0.421228 1_2:-72704121 Msa0090650:CDS
AAGATAATGAGTGAAACAAT+TGG 0.423033 1_2:+72704381 None:intergenic
CTAAACTCCTTCTCCAATCA+TGG 0.427158 1_2:-72704601 Msa0090650:exon
CAAGTAGGAACACATCTATA+AGG 0.427274 1_2:+72704159 None:intergenic
CATGATTGGAGAAGGAGTTT+AGG 0.441984 1_2:+72704602 None:intergenic
CACTAGGTGTCACAGATGAT+TGG 0.449809 1_2:-72702123 Msa0090650:CDS
ATGCTCATATTATGAAAAGT+TGG 0.462906 1_2:-72701748 Msa0090650:three_prime_UTR
AAGAACCTGAAATCGAGATC+GGG 0.463765 1_2:+72704674 None:intergenic
TATTGAATTGGCTGTTAAAT+GGG 0.466528 1_2:-72704109 Msa0090650:CDS
GATATGCCTACACCCATGAT+TGG 0.469391 1_2:+72704588 None:intergenic
TCAATAATAGCAGGATCACC+CGG 0.471488 1_2:+72704228 None:intergenic
ATGAGACTAAGGATGAATAG+AGG 0.490069 1_2:+72704478 None:intergenic
CGGTGAACCACCTTATAGTA+AGG 0.492096 1_2:-72704304 Msa0090650:CDS
TAACTTGCAATCATTATCCA+TGG 0.494656 1_2:+72701692 None:intergenic
TTATAGATGTGTTCCTACTT+GGG 0.497653 1_2:-72704157 Msa0090650:CDS
GAGAGCATTCATGCGAATGT+AGG 0.504524 1_2:+72702066 None:intergenic
AGATAATGAGTGAAACAATT+GGG 0.508906 1_2:+72704382 None:intergenic
ATCGCAAGGCACTTGAAGAA+TGG 0.514773 1_2:-72702042 Msa0090650:CDS
TGGATAGAATTAAGAAGCCT+AGG 0.521479 1_2:+72704508 None:intergenic
TGAGACGAGGAATGAGACTA+AGG 0.528904 1_2:+72704467 None:intergenic
AGTAAGGGAAGATCGATGGA+AGG 0.531826 1_2:+72704432 None:intergenic
TTCGCCGGAAAAGATGCCCC+CGG 0.532390 1_2:-72704247 Msa0090650:CDS
CAAGTACAATCAATAATAGC+AGG 0.535238 1_2:+72704219 None:intergenic
GAAGAACCTGAAATCGAGAT+CGG 0.538546 1_2:+72704673 None:intergenic
ATTCTTCAAGTGCCTTGCGA+TGG 0.543540 1_2:+72702044 None:intergenic
ATTCGAACGAAGTAAAGATA+AGG 0.546264 1_2:+72704354 None:intergenic
AGAGCATTCATGCGAATGTA+GGG 0.548827 1_2:+72702067 None:intergenic
CATGATGGACTTTACGTTGG+TGG 0.548990 1_2:-72704279 Msa0090650:CDS
GGATGAATAGAGGAATGGAA+TGG 0.558145 1_2:+72704488 None:intergenic
GTAAGGGAAGATCGATGGAA+GGG 0.569098 1_2:+72704433 None:intergenic
TAAATGGGCGCTTCGTAAGA+GGG 0.572086 1_2:-72704094 Msa0090650:CDS
CCTTATAGTAAGGTTCATGA+TGG 0.572606 1_2:-72704294 Msa0090650:CDS
GTCTGGAAAACCATCAAACT+GGG 0.576734 1_2:+72701948 None:intergenic
AATTGGGAATGTTCCGTCGG+AGG 0.578873 1_2:+72704398 None:intergenic
CAATAATAGCAGGATCACCC+GGG 0.581474 1_2:+72704229 None:intergenic
TAAACTCCTTCTCCAATCAT+GGG 0.581818 1_2:-72704600 Msa0090650:exon
CCGAGGTTGAAAAGTTTGAG+TGG 0.583549 1_2:-72704189 Msa0090650:CDS
ATGGACTTTACGTTGGTGGT+TGG 0.584648 1_2:-72704275 Msa0090650:CDS
CCTTCTCCAATCATGGGTGT+AGG 0.585770 1_2:-72704594 Msa0090650:exon
ACTAAGGATGAATAGAGGAA+TGG 0.589227 1_2:+72704483 None:intergenic
AATTCAATATCACCAGGTTG+AGG 0.590249 1_2:+72704123 None:intergenic
ATTGCATCGTGTAATGCCCA+TGG 0.591116 1_2:-72701709 Msa0090650:three_prime_UTR
GAGAAGTAAGGGAAGATCGA+TGG 0.593587 1_2:+72704428 None:intergenic
CCTACACCCATGATTGGAGA+AGG 0.593774 1_2:+72704594 None:intergenic
ATTGTACTTGTGAGTTTCCG+AGG 0.596378 1_2:-72704206 Msa0090650:CDS
ACAGCCAATTCAATATCACC+AGG 0.601105 1_2:+72704117 None:intergenic
CATGAATGCTCTCCATCGCA+AGG 0.603132 1_2:-72702056 Msa0090650:CDS
AACTTGCAATCATTATCCAT+GGG 0.603454 1_2:+72701693 None:intergenic
CAAGAATGCTAATAAAGTAG+AGG 0.605988 1_2:+72701880 None:intergenic
AGGTTGAAAAGTTTGAGTGG+TGG 0.609401 1_2:-72704186 Msa0090650:CDS
AACAATTGGGAATGTTCCGT+CGG 0.616528 1_2:+72704395 None:intergenic
ATGGGCATTACACGATGCAA+TGG 0.619638 1_2:+72701711 None:intergenic
TGAGATTGTTTATGACACAA+TGG 0.622404 1_2:-72701593 Msa0090650:three_prime_UTR
GTTCATGATGGACTTTACGT+TGG 0.636648 1_2:-72704282 Msa0090650:CDS
GGAGATCTAGTATCCCAAGT+AGG 0.645762 1_2:+72704144 None:intergenic
AGAACCTGAAATCGAGATCG+GGG 0.646478 1_2:+72704675 None:intergenic
GATGTGTTGAAGTTGAACAA+TGG 0.646551 1_2:-72701772 Msa0090650:three_prime_UTR
TCATGAACCTTACTATAAGG+TGG 0.649373 1_2:+72704297 None:intergenic
GCTAATAAAGTAGAGGCACA+AGG 0.650620 1_2:+72701887 None:intergenic
CGATGCAATGGTCTCAACTG+TGG 0.653190 1_2:+72701723 None:intergenic
TAAACTGCAACATCAACCGT+AGG 0.656391 1_2:+72704642 None:intergenic
GATACTAGATCTCCTCAACC+TGG 0.658121 1_2:-72704135 Msa0090650:CDS
GGAGTTGTATGTAATTGTTG+TGG 0.658660 1_2:-72701472 Msa0090650:three_prime_UTR
CTTCTCGGCAAAACCTCCGA+CGG 0.659592 1_2:-72704411 Msa0090650:CDS
TGTGCACTGTTAGTTGCACT+AGG 0.661928 1_2:-72702139 Msa0090650:CDS
TCGTCGTACATAACTGCGTG+CGG 0.670674 1_2:-72704732 None:intergenic
GGTGTGATGCGATTGAGACG+AGG 0.672751 1_2:+72704454 None:intergenic
AATAATAGCAGGATCACCCG+GGG 0.690073 1_2:+72704230 None:intergenic
ATAATAGCAGGATCACCCGG+GGG 0.807868 1_2:+72704231 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTGATTATTTTTACTC+CGG + chr1_2:72702459-72702478 None:intergenic 15.0%
!! ATCTTAGTTGAAAAATAAAT+TGG - chr1_2:72704657-72704676 Msa0090650:five_prime_UTR 15.0%
!!! AATAGTCTTTGTTTGTTATT+TGG + chr1_2:72701454-72701473 None:intergenic 20.0%
!! TACTACAATATTTCATTTCA+TGG + chr1_2:72702155-72702174 None:intergenic 20.0%
!!! ATTTCATTTTATGAGAGTAA+TGG - chr1_2:72702791-72702810 Msa0090650:intron 20.0%
!!! TTTTCTATGTTGTTTGATAA+AGG - chr1_2:72702882-72702901 Msa0090650:intron 20.0%
!!! TTTCTATGTTGTTTGATAAA+GGG - chr1_2:72702883-72702902 Msa0090650:intron 20.0%
!!! TATTACAATTTTGCTAGTTT+TGG - chr1_2:72703076-72703095 Msa0090650:intron 20.0%
!! ATGAATGAAAATGAGTAAAA+AGG + chr1_2:72703388-72703407 None:intergenic 20.0%
!! CATTTATTAAACAATGTATG+TGG - chr1_2:72703474-72703493 Msa0090650:intron 20.0%
!! AAAACAAAACAAAATGATGT+TGG + chr1_2:72703948-72703967 None:intergenic 20.0%
!!! TATATGGCAGTAAATTTTAT+TGG - chr1_2:72704597-72704616 Msa0090650:exon 20.0%
!!! TATTTTTCAACTAAGATCTT+TGG + chr1_2:72704654-72704673 None:intergenic 20.0%
! AGATAATGAGTGAAACAATT+GGG + chr1_2:72701771-72701790 None:intergenic 25.0%
! AAGATAATGAGTGAAACAAT+TGG + chr1_2:72701772-72701791 None:intergenic 25.0%
! ATATTGAATTGGCTGTTAAA+TGG - chr1_2:72702040-72702059 Msa0090650:CDS 25.0%
! TATTGAATTGGCTGTTAAAT+GGG - chr1_2:72702041-72702060 Msa0090650:CDS 25.0%
! TAAGCACAATGAACAAAAAT+GGG + chr1_2:72702093-72702112 None:intergenic 25.0%
! ATAAGCACAATGAACAAAAA+TGG + chr1_2:72702094-72702113 None:intergenic 25.0%
!! ATTTTTGTTCATTGTGCTTA+TGG - chr1_2:72702093-72702112 Msa0090650:CDS 25.0%
!! GTTCAAAACAACTTTAGAAA+AGG + chr1_2:72702553-72702572 None:intergenic 25.0%
!!! CTTTGGATTAGTGTATATAT+TGG + chr1_2:72702650-72702669 None:intergenic 25.0%
! AACAACATAGAAAACTGTAA+GGG + chr1_2:72702876-72702895 None:intergenic 25.0%
! AAACAACATAGAAAACTGTA+AGG + chr1_2:72702877-72702896 None:intergenic 25.0%
! AGTAAAATTCTTTCTTCCAA+TGG + chr1_2:72703057-72703076 None:intergenic 25.0%
! TGTATGATATGAATAGACTA+GGG + chr1_2:72703412-72703431 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr1_2:72703439-72703458 None:intergenic 25.0%
! CATTCAATTAACGATGTATA+TGG + chr1_2:72703513-72703532 None:intergenic 25.0%
!! CTTTTGCTTATAATAGTGAT+CGG - chr1_2:72703548-72703567 Msa0090650:intron 25.0%
! TTGTATGTTTAATTCATCTC+TGG + chr1_2:72703716-72703735 None:intergenic 25.0%
! AGTGATACTATTATATTCCT+AGG - chr1_2:72703739-72703758 Msa0090650:intron 25.0%
! TAATATAGTGAAACTCTCAT+TGG - chr1_2:72703819-72703838 Msa0090650:intron 25.0%
!! TGTAACTTGTAAGTTAAATG+TGG + chr1_2:72703855-72703874 None:intergenic 25.0%
! TGGTTATATCACATTCTTAT+AGG + chr1_2:72703928-72703947 None:intergenic 25.0%
! AAAAGCTGATAAAGCAAAAA+CGG - chr1_2:72704060-72704079 Msa0090650:CDS 25.0%
! TTAATCTTGAACCTATTATC+TGG - chr1_2:72704301-72704320 Msa0090650:CDS 25.0%
! ATGCTCATATTATGAAAAGT+TGG - chr1_2:72704402-72704421 Msa0090650:CDS 25.0%
!!! ATTCTGAAGTTTTGATGTAA+TGG - chr1_2:72704703-72704722 Msa0090650:five_prime_UTR 25.0%
GTATGCGAAGATTAGTAATA+GGG + chr1_2:72701614-72701633 None:intergenic 30.0%
!!! TTAAGAAGCCTAGGTTTTTT+AGG + chr1_2:72701636-72701655 None:intergenic 30.0%
ATTCGAACGAAGTAAAGATA+AGG + chr1_2:72701799-72701818 None:intergenic 30.0%
CAAGTACAATCAATAATAGC+AGG + chr1_2:72701934-72701953 None:intergenic 30.0%
TTATAGATGTGTTCCTACTT+GGG - chr1_2:72701993-72702012 Msa0090650:exon 30.0%
TTGTTAGTATGAATGGAACT+AGG - chr1_2:72702275-72702294 Msa0090650:intron 30.0%
TGTTAACCAAAAGAAACCTA+GGG + chr1_2:72702426-72702445 None:intergenic 30.0%
ATGTTAACCAAAAGAAACCT+AGG + chr1_2:72702427-72702446 None:intergenic 30.0%
!! TATTTTTACTCCGGTGTATA+TGG + chr1_2:72702450-72702469 None:intergenic 30.0%
! TGTAGGTTGAAAATGTTACA+AGG + chr1_2:72702484-72702503 None:intergenic 30.0%
CCATGCTATCATATAATTGT+AGG + chr1_2:72702501-72702520 None:intergenic 30.0%
CCTACAATTATATGATAGCA+TGG - chr1_2:72702498-72702517 Msa0090650:intron 30.0%
!! CTTTAGAAAAGGCATTTGTT+TGG + chr1_2:72702542-72702561 None:intergenic 30.0%
TTCTAAATTTGTGCTTGTCA+AGG - chr1_2:72702574-72702593 Msa0090650:intron 30.0%
CCAATTTAGATAGGAGAATT+TGG + chr1_2:72702674-72702693 None:intergenic 30.0%
CCAAATTCTCCTATCTAAAT+TGG - chr1_2:72702671-72702690 Msa0090650:intron 30.0%
GTCTCAATTCCAATTTAGAT+AGG + chr1_2:72702683-72702702 None:intergenic 30.0%
CTTTCACATAAATCAGAATG+TGG + chr1_2:72702754-72702773 None:intergenic 30.0%
ACAACATAGAAAACTGTAAG+GGG + chr1_2:72702875-72702894 None:intergenic 30.0%
TAAACACTTAAGACATGTGA+GGG + chr1_2:72702982-72703001 None:intergenic 30.0%
!! ATTATCTGTTGTTTCCTTGA+AGG + chr1_2:72703026-72703045 None:intergenic 30.0%
CAGATAATTGAGATAACCAT+TGG - chr1_2:72703038-72703057 Msa0090650:intron 30.0%
! ATCAACAACACTGTTTGTTT+TGG - chr1_2:72703117-72703136 Msa0090650:intron 30.0%
ACTTTCGTGTTCATTATCTT+CGG - chr1_2:72703150-72703169 Msa0090650:intron 30.0%
! ATTGCATGTGTGTTATTCTA+AGG + chr1_2:72703287-72703306 None:intergenic 30.0%
ACACATGCAATGAAAAAACT+GGG - chr1_2:72703296-72703315 Msa0090650:intron 30.0%
AAAAGCCCATATTGTCAATT+AGG - chr1_2:72703334-72703353 Msa0090650:intron 30.0%
TCCTACCTAATTGACAATAT+GGG + chr1_2:72703342-72703361 None:intergenic 30.0%
ATCCTACCTAATTGACAATA+TGG + chr1_2:72703343-72703362 None:intergenic 30.0%
GTGTATGATATGAATAGACT+AGG + chr1_2:72703413-72703432 None:intergenic 30.0%
TAAGTTAAATGTGGAGACAT+TGG + chr1_2:72703846-72703865 None:intergenic 30.0%
TAGTCAATGAATCACTTCTT+TGG + chr1_2:72704161-72704180 None:intergenic 30.0%
! GTTTTCCAGACAATACTTAA+TGG - chr1_2:72704214-72704233 Msa0090650:CDS 30.0%
!! TTTTGCCATTAAGTATTGTC+TGG + chr1_2:72704222-72704241 None:intergenic 30.0%
CAAGAATGCTAATAAAGTAG+AGG + chr1_2:72704273-72704292 None:intergenic 30.0%
AACTTGCAATCATTATCCAT+GGG + chr1_2:72704460-72704479 None:intergenic 30.0%
! TAACTTGCAATCATTATCCA+TGG + chr1_2:72704461-72704480 None:intergenic 30.0%
! CTCAAGTTTTTCTTTGCATA+AGG - chr1_2:72704516-72704535 Msa0090650:CDS 30.0%
TGAGATTGTTTATGACACAA+TGG - chr1_2:72704557-72704576 Msa0090650:CDS 30.0%
TAAACTCCTTCTCCAATCAT+GGG - chr1_2:72701550-72701569 Msa0090650:three_prime_UTR 35.0%
GGTATGCGAAGATTAGTAAT+AGG + chr1_2:72701615-72701634 None:intergenic 35.0%
TTCGCATACCTAAAAAACCT+AGG - chr1_2:72701625-72701644 Msa0090650:three_prime_UTR 35.0%
TGGATAGAATTAAGAAGCCT+AGG + chr1_2:72701645-72701664 None:intergenic 35.0%
ACTAAGGATGAATAGAGGAA+TGG + chr1_2:72701670-72701689 None:intergenic 35.0%
ATGAGACTAAGGATGAATAG+AGG + chr1_2:72701675-72701694 None:intergenic 35.0%
TCATGAACCTTACTATAAGG+TGG + chr1_2:72701856-72701875 None:intergenic 35.0%
CCATCATGAACCTTACTATA+AGG + chr1_2:72701859-72701878 None:intergenic 35.0%
CCTTATAGTAAGGTTCATGA+TGG - chr1_2:72701856-72701875 Msa0090650:three_prime_UTR 35.0%
CAAGTAGGAACACATCTATA+AGG + chr1_2:72701994-72702013 None:intergenic 35.0%
CTTATAGATGTGTTCCTACT+TGG - chr1_2:72701992-72702011 Msa0090650:exon 35.0%
AATTCAATATCACCAGGTTG+AGG + chr1_2:72702030-72702049 None:intergenic 35.0%
TCAACCTGGTGATATTGAAT+TGG - chr1_2:72702029-72702048 Msa0090650:CDS 35.0%
! GTGGTTGTTGTTAGTATGAA+TGG - chr1_2:72702268-72702287 Msa0090650:intron 35.0%
! CTGTTGTTTGTAAACTCTGA+AGG + chr1_2:72702302-72702321 None:intergenic 35.0%
! CCACTAGTTTATTACCATCA+AGG + chr1_2:72702359-72702378 None:intergenic 35.0%
! CCTTGATGGTAATAAACTAG+TGG - chr1_2:72702356-72702375 Msa0090650:intron 35.0%
!!! AGTGGTTATGTTAGTTTTCC+AGG - chr1_2:72702374-72702393 Msa0090650:intron 35.0%
!!! AGGGAGTTTTAAGAAGTTCA+AGG + chr1_2:72702407-72702426 None:intergenic 35.0%
TGAACTTCTTAAAACTCCCT+AGG - chr1_2:72702407-72702426 Msa0090650:intron 35.0%
! AAAACTCCCTAGGTTTCTTT+TGG - chr1_2:72702417-72702436 Msa0090650:intron 35.0%
TGGTTAACATCCATATACAC+CGG - chr1_2:72702437-72702456 Msa0090650:intron 35.0%
TGCTTGTCAAGGAAAAACTT+TGG - chr1_2:72702585-72702604 Msa0090650:intron 35.0%
AGATAGGAGAATTTGGACTT+TGG + chr1_2:72702667-72702686 None:intergenic 35.0%
TCTAAATTGGAATTGAGACG+AGG - chr1_2:72702684-72702703 Msa0090650:intron 35.0%
GTCACAAAGACACAAACTAA+TGG + chr1_2:72702732-72702751 None:intergenic 35.0%
TCTGCACATGAGATAATAGA+AGG - chr1_2:72702849-72702868 Msa0090650:intron 35.0%
! ATGTTGTTTGATAAAGGGAG+CGG - chr1_2:72702888-72702907 Msa0090650:intron 35.0%
! GGTTCTTTTCTCTCTTTAGT+TGG + chr1_2:72702961-72702980 None:intergenic 35.0%
CTAAACACTTAAGACATGTG+AGG + chr1_2:72702983-72703002 None:intergenic 35.0%
TTGATGCCAATAGTGTACAA+CGG + chr1_2:72703102-72703121 None:intergenic 35.0%
CACACATGCAATGAAAAAAC+TGG - chr1_2:72703295-72703314 Msa0090650:intron 35.0%
TATTCATATCATACACCCTC+CGG - chr1_2:72703417-72703436 Msa0090650:intron 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr1_2:72703551-72703570 Msa0090650:intron 35.0%
GTTGACAGATGTATTTCTTG+CGG + chr1_2:72703623-72703642 None:intergenic 35.0%
TAAGACAACAACGACAATCA+TGG + chr1_2:72703666-72703685 None:intergenic 35.0%
TATAGGCAAGCATAATAGTC+TGG + chr1_2:72703911-72703930 None:intergenic 35.0%
! GTTTTCCCTTTCTTGTGTAA+AGG - chr1_2:72703963-72703982 Msa0090650:intron 35.0%
CATGACCTTTACACAAGAAA+GGG + chr1_2:72703971-72703990 None:intergenic 35.0%
! ATGAATCACTTCTTTGGCTT+CGG + chr1_2:72704155-72704174 None:intergenic 35.0%
! TTTTGTCAATCCCAGTTTGA+TGG - chr1_2:72704192-72704211 Msa0090650:CDS 35.0%
GCAATCTGTAACCAGATAAT+AGG + chr1_2:72704315-72704334 None:intergenic 35.0%
GATGTGTTGAAGTTGAACAA+TGG - chr1_2:72704378-72704397 Msa0090650:CDS 35.0%
TGCAAAGAAAAACTTGAGCT+TGG + chr1_2:72704514-72704533 None:intergenic 35.0%
TTACTGCCATATAACTTTGC+AGG + chr1_2:72704590-72704609 None:intergenic 35.0%
GGAGTTGTATGTAATTGTTG+TGG - chr1_2:72704678-72704697 Msa0090650:five_prime_UTR 35.0%
!! GTTTTGATGTAATGGTGTGA+TGG - chr1_2:72704711-72704730 Msa0090650:five_prime_UTR 35.0%
AAGAACCTGAAATCGAGATC+GGG + chr1_2:72701479-72701498 None:intergenic 40.0%
GAAGAACCTGAAATCGAGAT+CGG + chr1_2:72701480-72701499 None:intergenic 40.0%
GGTTCTTCTTCTTCTTCCTA+CGG - chr1_2:72701492-72701511 Msa0090650:three_prime_UTR 40.0%
TAAACTGCAACATCAACCGT+AGG + chr1_2:72701511-72701530 None:intergenic 40.0%
CATGATTGGAGAAGGAGTTT+AGG + chr1_2:72701551-72701570 None:intergenic 40.0%
CTAAACTCCTTCTCCAATCA+TGG - chr1_2:72701549-72701568 Msa0090650:three_prime_UTR 40.0%
GGATGAATAGAGGAATGGAA+TGG + chr1_2:72701665-72701684 None:intergenic 40.0%
ATCGATCTTCCCTTACTTCT+CGG - chr1_2:72701724-72701743 Msa0090650:three_prime_UTR 40.0%
AACAATTGGGAATGTTCCGT+CGG + chr1_2:72701758-72701777 None:intergenic 40.0%
!! GTTCATGATGGACTTTACGT+TGG - chr1_2:72701868-72701887 Msa0090650:three_prime_UTR 40.0%
TCAATAATAGCAGGATCACC+CGG + chr1_2:72701925-72701944 None:intergenic 40.0%
ATTGTACTTGTGAGTTTCCG+AGG - chr1_2:72701944-72701963 Msa0090650:three_prime_UTR 40.0%
! CCACTCAAACTTTTCAACCT+CGG + chr1_2:72701964-72701983 None:intergenic 40.0%
AGGTTGAAAAGTTTGAGTGG+TGG - chr1_2:72701964-72701983 Msa0090650:three_prime_UTR 40.0%
ACAGCCAATTCAATATCACC+AGG + chr1_2:72702036-72702055 None:intergenic 40.0%
GAAGTTCAAGGTTCAAATCC+TGG + chr1_2:72702395-72702414 None:intergenic 40.0%
!! GAAAAGGCATTTGTTTGGAC+AGG + chr1_2:72702537-72702556 None:intergenic 40.0%
ATAAAGGGAGCGGTGATAAA+GGG - chr1_2:72702898-72702917 Msa0090650:intron 40.0%
GATAAAGGGAAATGTTGGAC+AGG - chr1_2:72702912-72702931 Msa0090650:intron 40.0%
TTTGTACTGTGAGTCCTTCA+AGG - chr1_2:72703009-72703028 Msa0090650:intron 40.0%
! TTTTGGCCGTTGTACACTAT+TGG - chr1_2:72703093-72703112 Msa0090650:intron 40.0%
GCCCATATTGTCAATTAGGT+AGG - chr1_2:72703338-72703357 Msa0090650:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_2:72703435-72703454 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_2:72703436-72703455 None:intergenic 40.0%
ATTTCTTGCGGCTGCAAATT+GGG + chr1_2:72703611-72703630 None:intergenic 40.0%
TATTTCTTGCGGCTGCAAAT+TGG + chr1_2:72703612-72703631 None:intergenic 40.0%
CCATGACCTTTACACAAGAA+AGG + chr1_2:72703972-72703991 None:intergenic 40.0%
CCTTTCTTGTGTAAAGGTCA+TGG - chr1_2:72703969-72703988 Msa0090650:intron 40.0%
! AGAGCATTCATGCGAATGTA+GGG + chr1_2:72704086-72704105 None:intergenic 40.0%
GTCTGGAAAACCATCAAACT+GGG + chr1_2:72704205-72704224 None:intergenic 40.0%
TGTCTGGAAAACCATCAAAC+TGG + chr1_2:72704206-72704225 None:intergenic 40.0%
! GCTAATAAAGTAGAGGCACA+AGG + chr1_2:72704266-72704285 None:intergenic 40.0%
GAGATGCCTGCAAAGTTATA+TGG - chr1_2:72704581-72704600 Msa0090650:CDS 40.0%
ATTTCCCCGATCTCGATTTC+AGG - chr1_2:72701471-72701490 Msa0090650:three_prime_UTR 45.0%
AGAACCTGAAATCGAGATCG+GGG + chr1_2:72701478-72701497 None:intergenic 45.0%
GATATGCCTACACCCATGAT+TGG + chr1_2:72701565-72701584 None:intergenic 45.0%
TGAGACGAGGAATGAGACTA+AGG + chr1_2:72701686-72701705 None:intergenic 45.0%
GTAAGGGAAGATCGATGGAA+GGG + chr1_2:72701720-72701739 None:intergenic 45.0%
AGTAAGGGAAGATCGATGGA+AGG + chr1_2:72701721-72701740 None:intergenic 45.0%
GAGAAGTAAGGGAAGATCGA+TGG + chr1_2:72701725-72701744 None:intergenic 45.0%
! GAGGTTTTGCCGAGAAGTAA+GGG + chr1_2:72701736-72701755 None:intergenic 45.0%
CGGTGAACCACCTTATAGTA+AGG - chr1_2:72701846-72701865 Msa0090650:three_prime_UTR 45.0%
!! CATGATGGACTTTACGTTGG+TGG - chr1_2:72701871-72701890 Msa0090650:three_prime_UTR 45.0%
!! ATGGACTTTACGTTGGTGGT+TGG - chr1_2:72701875-72701894 Msa0090650:three_prime_UTR 45.0%
AATAATAGCAGGATCACCCG+GGG + chr1_2:72701923-72701942 None:intergenic 45.0%
CAATAATAGCAGGATCACCC+GGG + chr1_2:72701924-72701943 None:intergenic 45.0%
CCGAGGTTGAAAAGTTTGAG+TGG - chr1_2:72701961-72701980 Msa0090650:three_prime_UTR 45.0%
GGAGATCTAGTATCCCAAGT+AGG + chr1_2:72702009-72702028 None:intergenic 45.0%
GATACTAGATCTCCTCAACC+TGG - chr1_2:72702015-72702034 Msa0090650:CDS 45.0%
TTAAATGGGCGCTTCGTAAG+AGG - chr1_2:72702055-72702074 Msa0090650:CDS 45.0%
TAAATGGGCGCTTCGTAAGA+GGG - chr1_2:72702056-72702075 Msa0090650:CDS 45.0%
TGACCCCACTTAGTGGAATA+AGG - chr1_2:72702241-72702260 Msa0090650:intron 45.0%
!! GAGCCTTATTCCACTAAGTG+GGG + chr1_2:72702247-72702266 None:intergenic 45.0%
!! CGAGCCTTATTCCACTAAGT+GGG + chr1_2:72702248-72702267 None:intergenic 45.0%
CCACTTAGTGGAATAAGGCT+CGG - chr1_2:72702246-72702265 Msa0090650:intron 45.0%
TGCACACCAATGACTTATGC+TGG - chr1_2:72702332-72702351 Msa0090650:intron 45.0%
CAAGGTCCAGCATAAGTCAT+TGG + chr1_2:72702341-72702360 None:intergenic 45.0%
TGACTTATGCTGGACCTTGA+TGG - chr1_2:72702342-72702361 Msa0090650:intron 45.0%
GATAAAGGGAGCGGTGATAA+AGG - chr1_2:72702897-72702916 Msa0090650:intron 45.0%
GCGGTGATAAAGGGAAATGT+TGG - chr1_2:72702907-72702926 Msa0090650:intron 45.0%
AACTCCTCGTCCTGTTTACT+GGG - chr1_2:72703187-72703206 Msa0090650:intron 45.0%
GTGCTAAACACCCAGTAAAC+AGG + chr1_2:72703200-72703219 None:intergenic 45.0%
TTTCTTGCGGCTGCAAATTG+GGG + chr1_2:72703610-72703629 None:intergenic 45.0%
ATCATGGTCTTTCTTCCCCA+GGG + chr1_2:72703650-72703669 None:intergenic 45.0%
AATCATGGTCTTTCTTCCCC+AGG + chr1_2:72703651-72703670 None:intergenic 45.0%
ATATTCCTAGGTCCCTGCAT+AGG - chr1_2:72703751-72703770 Msa0090650:intron 45.0%
TGTGCACTGTTAGTTGCACT+AGG - chr1_2:72704011-72704030 Msa0090650:intron 45.0%
! CACTAGGTGTCACAGATGAT+TGG - chr1_2:72704027-72704046 Msa0090650:intron 45.0%
!! GAGAGCATTCATGCGAATGT+AGG + chr1_2:72704087-72704106 None:intergenic 45.0%
ATTCTTCAAGTGCCTTGCGA+TGG + chr1_2:72704109-72704128 None:intergenic 45.0%
! ATCGCAAGGCACTTGAAGAA+TGG - chr1_2:72704108-72704127 Msa0090650:CDS 45.0%
ATGGGCATTACACGATGCAA+TGG + chr1_2:72704442-72704461 None:intergenic 45.0%
ATTGCATCGTGTAATGCCCA+TGG - chr1_2:72704441-72704460 Msa0090650:CDS 45.0%
CCTACACCCATGATTGGAGA+AGG + chr1_2:72701559-72701578 None:intergenic 50.0%
CCTTCTCCAATCATGGGTGT+AGG - chr1_2:72701556-72701575 Msa0090650:three_prime_UTR 50.0%
! GGAGGTTTTGCCGAGAAGTA+AGG + chr1_2:72701737-72701756 None:intergenic 50.0%
AATTGGGAATGTTCCGTCGG+AGG + chr1_2:72701755-72701774 None:intergenic 50.0%
!!! GCTTTTTCGTCTTCGAAGCG+CGG + chr1_2:72701827-72701846 None:intergenic 50.0%
GCGCTTCGAAGACGAAAAAG+CGG - chr1_2:72701826-72701845 Msa0090650:three_prime_UTR 50.0%
ATAATAGCAGGATCACCCGG+GGG + chr1_2:72701922-72701941 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr1_2:72702235-72702254 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr1_2:72702234-72702253 Msa0090650:intron 50.0%
!! CCGAGCCTTATTCCACTAAG+TGG + chr1_2:72702249-72702268 None:intergenic 50.0%
CTTAGTGGAATAAGGCTCGG+TGG - chr1_2:72702249-72702268 Msa0090650:intron 50.0%
GAACTCCTCGTCCTGTTTAC+TGG - chr1_2:72703186-72703205 Msa0090650:intron 50.0%
AACACCCAGTAAACAGGACG+AGG + chr1_2:72703194-72703213 None:intergenic 50.0%
TTCTTGCGGCTGCAAATTGG+GGG + chr1_2:72703609-72703628 None:intergenic 50.0%
TCAGTGCACATGCCTATGCA+GGG + chr1_2:72703766-72703785 None:intergenic 50.0%
ATCAGTGCACATGCCTATGC+AGG + chr1_2:72703767-72703786 None:intergenic 50.0%
CATGAATGCTCTCCATCGCA+AGG - chr1_2:72704094-72704113 Msa0090650:CDS 50.0%
CGATGCAATGGTCTCAACTG+TGG + chr1_2:72704430-72704449 None:intergenic 50.0%
GGTGTGATGCGATTGAGACG+AGG + chr1_2:72701699-72701718 None:intergenic 55.0%
CTTCTCGGCAAAACCTCCGA+CGG - chr1_2:72701739-72701758 Msa0090650:three_prime_UTR 55.0%
! GGCATCTTTTCCGGCGAAGA+AGG + chr1_2:72701901-72701920 None:intergenic 55.0%
TCTTGCGGCTGCAAATTGGG+GGG + chr1_2:72703608-72703627 None:intergenic 55.0%
TACATCTGTCAACCCCACCC+TGG - chr1_2:72703630-72703649 Msa0090650:intron 55.0%
ACATCTGTCAACCCCACCCT+GGG - chr1_2:72703631-72703650 Msa0090650:intron 55.0%
TGGTCTTTCTTCCCCAGGGT+GGG + chr1_2:72703646-72703665 None:intergenic 55.0%
ATGGTCTTTCTTCCCCAGGG+TGG + chr1_2:72703647-72703666 None:intergenic 55.0%
ACATGCCTATGCAGGGACCT+AGG + chr1_2:72703759-72703778 None:intergenic 55.0%
!! TGGTGGTTGGCCTTCTTCGC+CGG - chr1_2:72701888-72701907 Msa0090650:three_prime_UTR 60.0%
TTCGCCGGAAAAGATGCCCC+CGG - chr1_2:72701903-72701922 Msa0090650:three_prime_UTR 60.0%
!!! TCACCCGGGGGCATCTTTTC+CGG + chr1_2:72701910-72701929 None:intergenic 60.0%
TTGCGGCTGCAAATTGGGGG+GGG + chr1_2:72703606-72703625 None:intergenic 60.0%
CTTGCGGCTGCAAATTGGGG+GGG + chr1_2:72703607-72703626 None:intergenic 60.0%
CATCTGTCAACCCCACCCTG+GGG - chr1_2:72703632-72703651 Msa0090650:intron 60.0%
GGTCTTTCTTCCCCAGGGTG+GGG + chr1_2:72703645-72703664 None:intergenic 60.0%
TCGCCGGAAAAGATGCCCCC+GGG - chr1_2:72701904-72701923 Msa0090650:three_prime_UTR 65.0%
TGCGGCTGCAAATTGGGGGG+GGG + chr1_2:72703605-72703624 None:intergenic 65.0%
GGCTGCAAATTGGGGGGGGG+GGG + chr1_2:72703602-72703621 None:intergenic 70.0%
CGGCTGCAAATTGGGGGGGG+GGG + chr1_2:72703603-72703622 None:intergenic 70.0%
GCGGCTGCAAATTGGGGGGG+GGG + chr1_2:72703604-72703623 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72701422 72704750 72701422 ID=Msa0090650;Name=Msa0090650
chr1_2 mRNA 72701422 72704750 72701422 ID=Msa0090650-mRNA-1;Parent=Msa0090650;Name=Msa0090650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=146|1|1|1|1|1|2|581|243
chr1_2 exon 72701422 72702187 72701422 ID=Msa0090650-mRNA-1:exon:25294;Parent=Msa0090650-mRNA-1
chr1_2 exon 72704058 72704750 72704058 ID=Msa0090650-mRNA-1:exon:25293;Parent=Msa0090650-mRNA-1
chr1_2 five_prime_UTR 72704605 72704750 72704605 ID=Msa0090650-mRNA-1:five_prime_utr;Parent=Msa0090650-mRNA-1
chr1_2 CDS 72704058 72704604 72704058 ID=Msa0090650-mRNA-1:cds;Parent=Msa0090650-mRNA-1
chr1_2 CDS 72702003 72702187 72702003 ID=Msa0090650-mRNA-1:cds;Parent=Msa0090650-mRNA-1
chr1_2 three_prime_UTR 72701422 72702002 72701422 ID=Msa0090650-mRNA-1:three_prime_utr;Parent=Msa0090650-mRNA-1
Gene Sequence

>Msa0090650

ATGGGTGTAGGCATATCAGTGTTAATAGCACTAAAAGCAACAACCCTATTACTAATCTTCGCATACCTAAAAAACCTAGGCTTCTTAATTCTATCCATTCCATTCCTCTATTCATCCTTAGTCTCATTCCTCGTCTCAATCGCATCACACCCTTCCATCGATCTTCCCTTACTTCTCGGCAAAACCTCCGACGGAACATTCCCAATTGTTTCACTCATTATCTTCAGTCCTTATCTTTACTTCGTTCGAATCTTCTCCGCGCTTCGAAGACGAAAAAGCGGTGAACCACCTTATAGTAAGGTTCATGATGGACTTTACGTTGGTGGTTGGCCTTCTTCGCCGGAAAAGATGCCCCCGGGTGATCCTGCTATTATTGATTGTACTTGTGAGTTTCCGAGGTTGAAAAGTTTGAGTGGTGGTTTGCCTTATAGATGTGTTCCTACTTGGGATACTAGATCTCCTCAACCTGGTGATATTGAATTGGCTGTTAAATGGGCGCTTCGTAAGAGGGATCTTAATCGTCCCATTTTTGTTCATTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTGATGTGTGCACTGTTAGTTGCACTAGGTGTCACAGATGATTGGAAAAATGCTGAAAAGCTGATAAAGCAAAAACGGCCCTACATTCGCATGAATGCTCTCCATCGCAAGGCACTTGAAGAATGGTCAGCGCATCGATTGTCTACGCCGAAGCCAAAGAAGTGA

Protein sequence

>Msa0090650

MGVGISVLIALKATTLLLIFAYLKNLGFLILSIPFLYSSLVSFLVSIASHPSIDLPLLLGKTSDGTFPIVSLIIFSPYLYFVRIFSALRRRKSGEPPYSKVHDGLYVGGWPSSPEKMPPGDPAIIDCTCEFPRLKSLSGGLPYRCVPTWDTRSPQPGDIELAVKWALRKRDLNRPIFVHCAYGHGRSVAVMCALLVALGVTDDWKNAEKLIKQKRPYIRMNALHRKALEEWSAHRLSTPKPKK*