AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899080 MtrunA17_Chr6g0484911 86.842 190 14 2 28 206 17 206 3.70e-116 329
Msa0899080 MtrunA17_Chr5g0422751 69.536 151 37 4 60 206 11 156 6.38e-69 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899080 AT1G68660.1 74.172 151 33 4 60 206 11 159 8.50e-74 220
Msa0899080 AT1G68660.2 55.629 151 31 5 60 206 11 129 8.97e-46 148

Find 57 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAGGTGATAAATATTT+TGG 0.167312 6_1:-93864637 Msa0899080:intron
ACCAATCAGTAGTAATATTT+AGG 0.222061 6_1:-93862510 Msa0899080:three_prime_UTR
ATGCAAGAAGCACATATTAA+TGG 0.300616 6_1:-93862977 Msa0899080:CDS
TTTGAGTTTACAAGTCAATA+AGG 0.304316 6_1:+93865565 None:intergenic
ACTGCGTAATGAAGCTTTCA+TGG 0.335357 6_1:+93865386 None:intergenic
GGCACCTAGTTCTATACTTT+GGG 0.359915 6_1:+93865461 None:intergenic
ATTCACCACAGTCAGTAAAT+TGG 0.370829 6_1:-93862810 Msa0899080:three_prime_UTR
CGTTTGATCATCTTCATTCA+AGG 0.379794 6_1:+93862785 None:intergenic
TTAAGTCAAATTCAGATTCT+CGG 0.388414 6_1:+93864509 None:intergenic
GTTTCAAATATGGCAAAGAT+AGG 0.389452 6_1:-93864615 Msa0899080:CDS
TGGCACCTAGTTCTATACTT+TGG 0.400978 6_1:+93865460 None:intergenic
GGTATATATAGTAAAACTAT+AGG 0.415959 6_1:-93862675 Msa0899080:three_prime_UTR
ACCTAAATATTACTACTGAT+TGG 0.423762 6_1:+93862509 None:intergenic
GCAATATCAACTGTCATTCC+AGG 0.427583 6_1:+93863010 None:intergenic
TGCATGCAATTGAGAGGAAA+TGG 0.433575 6_1:-93862908 Msa0899080:CDS
GAGAATCTGAATTTGACTTA+AGG 0.436402 6_1:-93864507 Msa0899080:intron
TCTCTATGTGTGGTGGCAAT+TGG 0.441685 6_1:+93865418 None:intergenic
TTGTTCGATCTTCATTCAAA+AGG 0.444402 6_1:-93862721 Msa0899080:three_prime_UTR
GTGGCAATTGGAAATAATAA+TGG 0.445292 6_1:+93865430 None:intergenic
GAGTGGATGCATTGAGTAGT+TGG 0.453547 6_1:+93865334 None:intergenic
TGGAAAAGGTGGTGGTTTGT+TGG 0.476679 6_1:-93864566 Msa0899080:CDS
GTATACAATCTATCTTTAAG+TGG 0.490214 6_1:+93862608 None:intergenic
GTCAAATTCAGATTCTCGGC+CGG 0.490666 6_1:+93864513 None:intergenic
TTGTGTAGCATTACTCTGTA+TGG 0.492187 6_1:+93863085 None:intergenic
TTCCTCTCAATTGCATGCAA+TGG 0.502233 6_1:+93862912 None:intergenic
GTATATATAGTAAAACTATA+GGG 0.507181 6_1:-93862674 Msa0899080:three_prime_UTR
CTACTCAATGCATCCACTCC+TGG 0.512586 6_1:-93865330 Msa0899080:intron
TTAGGTGAAATTAGAGCAAG+TGG 0.519142 6_1:+93865357 None:intergenic
TAGTAAAACTATAGGGTGCT+AGG 0.525302 6_1:-93862667 Msa0899080:three_prime_UTR
ACAATGGTAGCCAGTGGAAA+AGG 0.527330 6_1:-93864580 Msa0899080:CDS
ATTTATGACAAGACATTGAA+CGG 0.532711 6_1:-93862582 Msa0899080:three_prime_UTR
ACTCAACAACCACCATCAGC+TGG 0.532785 6_1:+93862866 None:intergenic
TCAAATTCAGATTCTCGGCC+GGG 0.540466 6_1:+93864514 None:intergenic
TATACAATCTATCTTTAAGT+GGG 0.544157 6_1:+93862609 None:intergenic
TTGAGTTTCTCTATGTGTGG+TGG 0.546339 6_1:+93865411 None:intergenic
AGTTCAATTGAGCCAGCTGA+TGG 0.556313 6_1:-93862878 Msa0899080:CDS
GATGCATTGAGTAGTTGGTT+AGG 0.562303 6_1:+93865339 None:intergenic
TACTCCCAAAGTATAGAACT+AGG 0.570420 6_1:-93865465 Msa0899080:CDS
AGGTTCCAATTTACTGACTG+TGG 0.570732 6_1:+93862805 None:intergenic
CAATCTATCTTTAAGTGGGA+AGG 0.577145 6_1:+93862613 None:intergenic
GCTTTGAGTTTCTCTATGTG+TGG 0.578208 6_1:+93865408 None:intergenic
TGAGTTATAATTACCAGGAG+TGG 0.591813 6_1:+93865317 None:intergenic
TAGGAGTATTGTAATGACAA+TGG 0.592311 6_1:-93864596 Msa0899080:CDS
GTAGCCAGTGGAAAAGGTGG+TGG 0.601202 6_1:-93864574 Msa0899080:CDS
CTGATTGATTGACTGTGGTG+AGG 0.610148 6_1:-93862696 Msa0899080:three_prime_UTR
GACCATTGCATGCAATTGAG+AGG 0.614338 6_1:-93862914 Msa0899080:CDS
TCTATCTTTAAGTGGGAAGG+AGG 0.615317 6_1:+93862616 None:intergenic
GAAATAATAATGGCAAGATG+TGG 0.615375 6_1:+93865440 None:intergenic
ATGGTAGCCAGTGGAAAAGG+TGG 0.632586 6_1:-93864577 Msa0899080:CDS
GTGTTGATGAAAGTGATACC+TGG 0.634232 6_1:-93863028 Msa0899080:CDS
AAGTGGGAAGGAGGACACCA+TGG 0.643900 6_1:+93862625 None:intergenic
TGTAGCATTACTCTGTATGG+TGG 0.656579 6_1:+93863088 None:intergenic
ACATATTAATGGATTAGCAG+TGG 0.658551 6_1:-93862966 Msa0899080:CDS
TACTGACTGTGGTGAATGCG+AGG 0.662618 6_1:+93862816 None:intergenic
TCAATTGAGCCAGCTGATGG+TGG 0.665740 6_1:-93862875 Msa0899080:CDS
GTAATGACAATGGTAGCCAG+TGG 0.683809 6_1:-93864586 Msa0899080:CDS
AGGTTCTGATTGATTGACTG+TGG 0.694312 6_1:-93862701 Msa0899080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCTAAAATTATAATAATAA+AGG - chr6_1:93863135-93863154 Msa0899080:intron 10.0%
!! CCTAAAATTATAATAATAAA+GGG - chr6_1:93863136-93863155 Msa0899080:intron 10.0%
!!! ACTAGTAAATTATTTTATTA+GGG - chr6_1:93863981-93864000 Msa0899080:intron 10.0%
!! AATTACTAACATTTAATTAT+AGG - chr6_1:93864234-93864253 Msa0899080:intron 10.0%
!! AAAAAATGAAAAAATTATTG+TGG + chr6_1:93864261-93864280 None:intergenic 10.0%
!!! TACTATGTTGATTTTTTTTT+GGG + chr6_1:93862485-93862504 None:intergenic 15.0%
!!! TTACTATGTTGATTTTTTTT+TGG + chr6_1:93862486-93862505 None:intergenic 15.0%
!!! CCCTTTATTATTATAATTTT+AGG + chr6_1:93863139-93863158 None:intergenic 15.0%
!! ATAGATTAAATATCAAAGAT+AGG - chr6_1:93863202-93863221 Msa0899080:intron 15.0%
!! CGTTAAAAAAAATTGTATTA+AGG - chr6_1:93863304-93863323 Msa0899080:intron 15.0%
!!! AAATATTTTGGTTTCAAATA+TGG - chr6_1:93863372-93863391 Msa0899080:intron 15.0%
!!! CACTAGTAAATTATTTTATT+AGG - chr6_1:93863980-93863999 Msa0899080:intron 15.0%
!! GTATATATAGTAAAACTATA+GGG - chr6_1:93865323-93865342 Msa0899080:intron 15.0%
!!! TATTGTTTTTTAATGAAACA+AGG - chr6_1:93865536-93865555 Msa0899080:exon 15.0%
!!! ACTATGTTGATTTTTTTTTG+GGG + chr6_1:93862484-93862503 None:intergenic 20.0%
!! AATTAATCAACAAAGCAAAA+TGG + chr6_1:93862782-93862801 None:intergenic 20.0%
!! ATTGTTTCAGTATATAAACT+CGG - chr6_1:93862987-93863006 Msa0899080:CDS 20.0%
!!! AATATTTTCTTCAATTGAGT+TGG + chr6_1:93863062-93863081 None:intergenic 20.0%
!! CATATAAAATTTGTAATTGC+AGG - chr6_1:93863345-93863364 Msa0899080:intron 20.0%
!!! CAAAATTTTGATGTGAAATA+TGG + chr6_1:93863657-93863676 None:intergenic 20.0%
!!! AAATTTGAAGCTGTTTTTTT+AGG + chr6_1:93863909-93863928 None:intergenic 20.0%
!!! AAGTTAAGAAAATCATTTTG+TGG - chr6_1:93864375-93864394 Msa0899080:intron 20.0%
!! ACAAGGAAATACAAATAAAA+GGG + chr6_1:93864436-93864455 None:intergenic 20.0%
!! ACAAACCGATAAAAAAAATA+TGG - chr6_1:93864667-93864686 Msa0899080:intron 20.0%
!!! AGTGACCATATTTTTTTTAT+CGG + chr6_1:93864675-93864694 None:intergenic 20.0%
!! AAAAAATATGGTCACTAAAT+TGG - chr6_1:93864679-93864698 Msa0899080:intron 20.0%
!!! GTTTTATTGTTTTTGTTACT+AGG - chr6_1:93864868-93864887 Msa0899080:intron 20.0%
!! GGTATATATAGTAAAACTAT+AGG - chr6_1:93865322-93865341 Msa0899080:intron 20.0%
!!! TATATTATACACATTTTCCA+TGG - chr6_1:93865355-93865374 Msa0899080:CDS 20.0%
!! TATACAATCTATCTTTAAGT+GGG + chr6_1:93865391-93865410 None:intergenic 20.0%
!! TTTGAGTTTACAAGTCAATA+AGG + chr6_1:93862435-93862454 None:intergenic 25.0%
! AATAATCATCTAGTTGTTAG+AGG - chr6_1:93862833-93862852 Msa0899080:three_prime_UTR 25.0%
! CTGAACTTCAAATTATACAA+GGG + chr6_1:93862865-93862884 None:intergenic 25.0%
! ACTGAACTTCAAATTATACA+AGG + chr6_1:93862866-93862885 None:intergenic 25.0%
! AATAATCATCTAGTTGTTAG+AGG - chr6_1:93862833-93862852 Msa0899080:three_prime_UTR 25.0%
! CTGAACTTCAAATTATACAA+GGG + chr6_1:93862865-93862884 None:intergenic 25.0%
! ACTGAACTTCAAATTATACA+AGG + chr6_1:93862866-93862885 None:intergenic 25.0%
! TTGTTTCAGTATATAAACTC+GGG - chr6_1:93862988-93863007 Msa0899080:CDS 25.0%
! TGATTAACGAGCTTAATTTA+TGG + chr6_1:93863032-93863051 None:intergenic 25.0%
! ATTGATGAAATTGTGTAAGA+AGG - chr6_1:93863079-93863098 Msa0899080:CDS 25.0%
!!! TAGGAGTATTATAATGACTA+TGG - chr6_1:93863221-93863240 Msa0899080:intron 25.0%
!! TAACTGAAATACATTTTCAC+TGG + chr6_1:93863250-93863269 None:intergenic 25.0%
!! ATTGCAGGTGATAAATATTT+TGG - chr6_1:93863360-93863379 Msa0899080:intron 25.0%
! TTAAGTCAAATTCAGATTCT+CGG + chr6_1:93863491-93863510 None:intergenic 25.0%
! ATGTGAAATATGGTATCAAT+TGG + chr6_1:93863647-93863666 None:intergenic 25.0%
! TAATGTTATCGTTAGAGTAA+TGG + chr6_1:93863691-93863710 None:intergenic 25.0%
! ACATTAGAAGTTGAAAGATT+AGG - chr6_1:93863705-93863724 Msa0899080:intron 25.0%
! CATTAGAAGTTGAAAGATTA+GGG - chr6_1:93863706-93863725 Msa0899080:intron 25.0%
! TTTCAACATTGTTATACACA+TGG + chr6_1:93864194-93864213 None:intergenic 25.0%
! ACATAATTAGTTGTCAAAAG+TGG - chr6_1:93864294-93864313 Msa0899080:intron 25.0%
! GACAAGGAAATACAAATAAA+AGG + chr6_1:93864437-93864456 None:intergenic 25.0%
! ACGTAATCACATTAATTGAA+AGG - chr6_1:93864465-93864484 Msa0899080:intron 25.0%
! CATTGTTTATGTAGTTACAT+AGG + chr6_1:93864516-93864535 None:intergenic 25.0%
! AGAGATCGAAAATATCAAAT+CGG - chr6_1:93864561-93864580 Msa0899080:CDS 25.0%
! TCGTTAACATTAGAAATTAG+CGG - chr6_1:93864596-93864615 Msa0899080:CDS 25.0%
! ACAATAAAACATGTCATCAA+AGG + chr6_1:93864858-93864877 None:intergenic 25.0%
! GTATACAATCTATCTTTAAG+TGG + chr6_1:93865392-93865411 None:intergenic 25.0%
! ATTTATGACAAGACATTGAA+CGG - chr6_1:93865415-93865434 Msa0899080:CDS 25.0%
! ACCAATCAGTAGTAATATTT+AGG - chr6_1:93865487-93865506 Msa0899080:CDS 25.0%
! ACCTAAATATTACTACTGAT+TGG + chr6_1:93865491-93865510 None:intergenic 25.0%
GAAATAATAATGGCAAGATG+TGG + chr6_1:93862560-93862579 None:intergenic 30.0%
GTGGCAATTGGAAATAATAA+TGG + chr6_1:93862570-93862589 None:intergenic 30.0%
AAAACAAGCAATAAAGAGTG+TGG + chr6_1:93862707-93862726 None:intergenic 30.0%
TCAGTCGAGTTAATTAAAGT+CGG - chr6_1:93862881-93862900 Msa0899080:CDS 30.0%
TCAGTCGAGTTAATTAAAGT+CGG - chr6_1:93862881-93862900 Msa0899080:CDS 30.0%
GTTTCAAATATGGCAAAGAT+AGG - chr6_1:93863382-93863401 Msa0899080:intron 30.0%
!! TAGGAGTATTGTAATGACAA+TGG - chr6_1:93863401-93863420 Msa0899080:intron 30.0%
! GAGAATCTGAATTTGACTTA+AGG - chr6_1:93863490-93863509 Msa0899080:intron 30.0%
GGTCTAACTAAAATTTGACT+CGG - chr6_1:93863782-93863801 Msa0899080:intron 30.0%
AGTACACCTCAAATTGTAAA+AGG + chr6_1:93863953-93863972 None:intergenic 30.0%
! TACAATTTGAGGTGTACTTA+AGG - chr6_1:93863955-93863974 Msa0899080:intron 30.0%
! ACAATTTGAGGTGTACTTAA+GGG - chr6_1:93863956-93863975 Msa0899080:intron 30.0%
GTTCAATGGGAAGAATATAA+TGG + chr6_1:93864043-93864062 None:intergenic 30.0%
! CTTCACATGTTTAGTTCAAT+GGG + chr6_1:93864056-93864075 None:intergenic 30.0%
! ACTTCACATGTTTAGTTCAA+TGG + chr6_1:93864057-93864076 None:intergenic 30.0%
TTTAACGACATTTCCTAAGT+CGG - chr6_1:93864619-93864638 Msa0899080:CDS 30.0%
CACAAGCATTAATATCTTGT+CGG + chr6_1:93864756-93864775 None:intergenic 30.0%
!!! ATTTCTATTTTTCAAGCCAG+TGG - chr6_1:93864788-93864807 Msa0899080:intron 30.0%
! ATGCAAGAAGCACATATTAA+TGG - chr6_1:93865020-93865039 Msa0899080:intron 30.0%
!! ACATATTAATGGATTAGCAG+TGG - chr6_1:93865031-93865050 Msa0899080:intron 30.0%
TTGTTCGATCTTCATTCAAA+AGG - chr6_1:93865276-93865295 Msa0899080:intron 30.0%
!!! TTTTGGGGTGACATATTGTA+AGG + chr6_1:93862469-93862488 None:intergenic 35.0%
TACTCCCAAAGTATAGAACT+AGG - chr6_1:93862532-93862551 Msa0899080:three_prime_UTR 35.0%
TTAGGTGAAATTAGAGCAAG+TGG + chr6_1:93862643-93862662 None:intergenic 35.0%
TGAGTTATAATTACCAGGAG+TGG + chr6_1:93862683-93862702 None:intergenic 35.0%
GTGGATGAGTTATAATTACC+AGG + chr6_1:93862688-93862707 None:intergenic 35.0%
!!! GTTGTTTTTTCAATGGTTGG+AGG + chr6_1:93863462-93863481 None:intergenic 35.0%
!!! GGTGTTGTTTTTTCAATGGT+TGG + chr6_1:93863465-93863484 None:intergenic 35.0%
ACCATTGAAAAAACAACACC+CGG - chr6_1:93863465-93863484 Msa0899080:intron 35.0%
CCAATGTAATGCTTTCATGT+TGG + chr6_1:93863764-93863783 None:intergenic 35.0%
!! CCAACATGAAAGCATTACAT+TGG - chr6_1:93863761-93863780 Msa0899080:intron 35.0%
!! TTTGACTCGGAGAATCTTTA+AGG - chr6_1:93863795-93863814 Msa0899080:intron 35.0%
! CTGCATCCTTTTACAATTTG+AGG - chr6_1:93863944-93863963 Msa0899080:intron 35.0%
CACAACTATTATAGCAGACA+AGG + chr6_1:93864135-93864154 None:intergenic 35.0%
CTTGTCTGCTATAATAGTTG+TGG - chr6_1:93864133-93864152 Msa0899080:intron 35.0%
ATTGTTATACACATGGAGGA+TGG + chr6_1:93864187-93864206 None:intergenic 35.0%
CAACATTGTTATACACATGG+AGG + chr6_1:93864191-93864210 None:intergenic 35.0%
ACACATGCAGAAAGATAGAT+AGG + chr6_1:93864410-93864429 None:intergenic 35.0%
GATTACGTGATATCATGACA+AGG + chr6_1:93864453-93864472 None:intergenic 35.0%
!!! AGGTTTTGAACTATGATGCA+TGG + chr6_1:93864838-93864857 None:intergenic 35.0%
TTGTGTAGCATTACTCTGTA+TGG + chr6_1:93864915-93864934 None:intergenic 35.0%
ATTCACCACAGTCAGTAAAT+TGG - chr6_1:93865187-93865206 Msa0899080:intron 35.0%
CGTTTGATCATCTTCATTCA+AGG + chr6_1:93865215-93865234 None:intergenic 35.0%
! TAGTAAAACTATAGGGTGCT+AGG - chr6_1:93865330-93865349 Msa0899080:intron 35.0%
CAATCTATCTTTAAGTGGGA+AGG + chr6_1:93865387-93865406 None:intergenic 35.0%
!! GGCACCTAGTTCTATACTTT+GGG + chr6_1:93862539-93862558 None:intergenic 40.0%
!! TGGCACCTAGTTCTATACTT+TGG + chr6_1:93862540-93862559 None:intergenic 40.0%
TTGAGTTTCTCTATGTGTGG+TGG + chr6_1:93862589-93862608 None:intergenic 40.0%
! GCTTTGAGTTTCTCTATGTG+TGG + chr6_1:93862592-93862611 None:intergenic 40.0%
ACTGCGTAATGAAGCTTTCA+TGG + chr6_1:93862614-93862633 None:intergenic 40.0%
GATGCATTGAGTAGTTGGTT+AGG + chr6_1:93862661-93862680 None:intergenic 40.0%
!! TCGGAGAATCTTTAAGGTCT+TGG - chr6_1:93863801-93863820 Msa0899080:intron 40.0%
!! CGGAGAATCTTTAAGGTCTT+GGG - chr6_1:93863802-93863821 Msa0899080:intron 40.0%
ATGTCCGTCTAAGAACCTAA+CGG + chr6_1:93863855-93863874 None:intergenic 40.0%
GCTATAATAGTTGTGGTCAC+TGG - chr6_1:93864140-93864159 Msa0899080:intron 40.0%
ACTAACTTAGAGTCCGACTT+AGG + chr6_1:93864635-93864654 None:intergenic 40.0%
TGTAGCATTACTCTGTATGG+TGG + chr6_1:93864912-93864931 None:intergenic 40.0%
! GTGTTGATGAAAGTGATACC+TGG - chr6_1:93864969-93864988 Msa0899080:intron 40.0%
GCAATATCAACTGTCATTCC+AGG + chr6_1:93864990-93865009 None:intergenic 40.0%
TTCCTCTCAATTGCATGCAA+TGG + chr6_1:93865088-93865107 None:intergenic 40.0%
TGCATGCAATTGAGAGGAAA+TGG - chr6_1:93865089-93865108 Msa0899080:intron 40.0%
! AGGTTCCAATTTACTGACTG+TGG + chr6_1:93865195-93865214 None:intergenic 40.0%
! AGGTTCTGATTGATTGACTG+TGG - chr6_1:93865296-93865315 Msa0899080:intron 40.0%
TCTATCTTTAAGTGGGAAGG+AGG + chr6_1:93865384-93865403 None:intergenic 40.0%
TCTCTATGTGTGGTGGCAAT+TGG + chr6_1:93862582-93862601 None:intergenic 45.0%
GAGTGGATGCATTGAGTAGT+TGG + chr6_1:93862666-93862685 None:intergenic 45.0%
GTAATGACAATGGTAGCCAG+TGG - chr6_1:93863411-93863430 Msa0899080:intron 45.0%
ACAATGGTAGCCAGTGGAAA+AGG - chr6_1:93863417-93863436 Msa0899080:intron 45.0%
! TGGAAAAGGTGGTGGTTTGT+TGG - chr6_1:93863431-93863450 Msa0899080:intron 45.0%
!!! GCCGGGTGTTGTTTTTTCAA+TGG + chr6_1:93863469-93863488 None:intergenic 45.0%
TCAAATTCAGATTCTCGGCC+GGG + chr6_1:93863486-93863505 None:intergenic 45.0%
GTCAAATTCAGATTCTCGGC+CGG + chr6_1:93863487-93863506 None:intergenic 45.0%
GGATAGAAAGAATGCCCGTT+AGG - chr6_1:93863837-93863856 Msa0899080:intron 45.0%
ATGCCCGTTAGGTTCTTAGA+CGG - chr6_1:93863848-93863867 Msa0899080:intron 45.0%
TGTCCGTCTAAGAACCTAAC+GGG + chr6_1:93863854-93863873 None:intergenic 45.0%
ACGAACATCATATACGCCAC+TGG + chr6_1:93864807-93864826 None:intergenic 45.0%
GACCATTGCATGCAATTGAG+AGG - chr6_1:93865083-93865102 Msa0899080:intron 45.0%
AGTTCAATTGAGCCAGCTGA+TGG - chr6_1:93865119-93865138 Msa0899080:intron 45.0%
CTGATTGATTGACTGTGGTG+AGG - chr6_1:93865301-93865320 Msa0899080:intron 45.0%
CTACTCAATGCATCCACTCC+TGG - chr6_1:93862667-93862686 Msa0899080:three_prime_UTR 50.0%
ATGGTAGCCAGTGGAAAAGG+TGG - chr6_1:93863420-93863439 Msa0899080:intron 50.0%
! CAAACCACCACCTTTTCCAC+TGG + chr6_1:93863430-93863449 None:intergenic 50.0%
GGTCTTGGGTCTAAGTCTTG+TGG - chr6_1:93863816-93863835 Msa0899080:intron 50.0%
TCAATTGAGCCAGCTGATGG+TGG - chr6_1:93865122-93865141 Msa0899080:intron 50.0%
ACTCAACAACCACCATCAGC+TGG + chr6_1:93865134-93865153 None:intergenic 50.0%
! TACTGACTGTGGTGAATGCG+AGG + chr6_1:93865184-93865203 None:intergenic 50.0%
GTAGCCAGTGGAAAAGGTGG+TGG - chr6_1:93863423-93863442 Msa0899080:intron 55.0%
AAGTGGGAAGGAGGACACCA+TGG + chr6_1:93865375-93865394 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 93862427 93865592 93862427 ID=Msa0899080;Name=Msa0899080
chr6_1 mRNA 93862427 93865592 93862427 ID=Msa0899080-mRNA-1;Parent=Msa0899080;Name=Msa0899080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=48|1|1|1|1|1|3|441|206
chr6_1 exon 93862427 93863129 93862427 ID=Msa0899080-mRNA-1:exon:15948;Parent=Msa0899080-mRNA-1
chr6_1 exon 93864508 93864652 93864508 ID=Msa0899080-mRNA-1:exon:15947;Parent=Msa0899080-mRNA-1
chr6_1 exon 93865331 93865592 93865331 ID=Msa0899080-mRNA-1:exon:15946;Parent=Msa0899080-mRNA-1
chr6_1 five_prime_UTR 93865545 93865592 93865545 ID=Msa0899080-mRNA-1:five_prime_utr;Parent=Msa0899080-mRNA-1
chr6_1 CDS 93865331 93865544 93865331 ID=Msa0899080-mRNA-1:cds;Parent=Msa0899080-mRNA-1
chr6_1 CDS 93864508 93864652 93864508 ID=Msa0899080-mRNA-1:cds;Parent=Msa0899080-mRNA-1
chr6_1 CDS 93862868 93863129 93862868 ID=Msa0899080-mRNA-1:cds;Parent=Msa0899080-mRNA-1
chr6_1 three_prime_UTR 93862427 93862867 93862427 ID=Msa0899080-mRNA-1:three_prime_utr;Parent=Msa0899080-mRNA-1
Gene Sequence

>Msa0899080

ATGTCACCCCAAAAAAAAATCAACATAGTAAAACGACAAGACAACATTACATTATTTTACTCCCAAAGTATAGAACTAGGTGCCACATCTTGCCATTATTATTTCCAATTGCCACCACACATAGAGAAACTCAAAGCCATGAAAGCTTCATTACGCAGTGCTACTCCACTTGCTCTAATTTCACCTAACCAACTACTCAATGCATCCACTCCTGGTGATAAATATTTTGGTTTCAAATATGGCAAAGATAGGAGTATTGTAATGACAATGGTAGCCAGTGGAAAAGGTGGTGGTTTGTTGGACAAGCCTCCAACCATTGAAAAAACAACACCCGGCCGAGAATCTGAATTTGACTTAAGGAAATCAAAAAAGACATCTCCACCATACAGAGTAATGCTACACAATGACAACTATAACAAAAGAGAATATGTTGTGCAAGTGTTGATGAAAGTGATACCTGGAATGACAGTTGATATTGCAGTTAACGTCATGCAAGAAGCACATATTAATGGATTAGCAGTGGTCATTATTTGTGCTCAAGTTGATGCTGAAGACCATTGCATGCAATTGAGAGGAAATGGTCTTTTAAGTTCAATTGAGCCAGCTGATGGTGGTTGTTGA

Protein sequence

>Msa0899080

MSPQKKINIVKRQDNITLFYSQSIELGATSCHYYFQLPPHIEKLKAMKASLRSATPLALISPNQLLNASTPGDKYFGFKYGKDRSIVMTMVASGKGGGLLDKPPTIEKTTPGRESEFDLRKSKKTSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHINGLAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC*