AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0592020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 183 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCCATTTCCTCTCTTTAA+TGG 0.169535 4_2:+17063434 None:intergenic
AACCTGCCCACCGCGATTTC+GGG 0.180793 4_2:+17063633 None:intergenic
ATATACTTACACTTTATATT+TGG 0.195784 4_2:+17059435 None:intergenic
GTATGTCATTCTCCTTTAAT+AGG 0.198477 4_2:+17060244 None:intergenic
CATAGACACACACCTGTTTA+TGG 0.203955 4_2:+17061914 None:intergenic
CAAGAGCCCCGTTGTCTAAT+AGG 0.208269 4_2:+17061213 None:intergenic
GAACCTGCCCACCGCGATTT+CGG 0.212773 4_2:+17063632 None:intergenic
AAAAGTAAGTTGAAAATTAA+TGG 0.221381 4_2:+17059258 None:intergenic
CTTCACCTGTTGCAGATTCT+TGG 0.226383 4_2:-17061426 Msa0592020:intron
TCAAGAAGCCAAGGCCTTAT+TGG 0.227680 4_2:-17060307 Msa0592020:three_prime_UTR
TTGAATAGATTGACAAGTTC+CGG 0.271170 4_2:+17059213 None:intergenic
TGAGGGTGATGTTGGTGTTT+TGG 0.272791 4_2:-17063305 Msa0592020:three_prime_UTR
AAAGCTTCAAATATATTGTT+TGG 0.284131 4_2:-17059067 Msa0592020:three_prime_UTR
TTGCACTATGCTGCTTATTA+TGG 0.284145 4_2:-17061490 Msa0592020:three_prime_UTR
TGGCCATGTAGATTCATTAA+AGG 0.303923 4_2:-17061470 Msa0592020:three_prime_UTR
TGTCCGGATGCTGCTTGCTT+GGG 0.304175 4_2:-17061021 Msa0592020:three_prime_UTR
AAGCTTCAAATATATTGTTT+GGG 0.312921 4_2:-17059066 Msa0592020:three_prime_UTR
CATCAGCCGCACCTCTTGTT+TGG 0.313334 4_2:-17060362 Msa0592020:three_prime_UTR
AGGATCGCTAGTCGCAATTC+AGG 0.319801 4_2:-17059731 Msa0592020:three_prime_UTR
AGTCTTTGTAATCCGGTTAT+CGG 0.319837 4_2:-17059492 Msa0592020:three_prime_UTR
GATCCATTAAAGAGAGGAAA+TGG 0.320827 4_2:-17063437 Msa0592020:three_prime_UTR
CCCGTGGTGCAACCGGTTGC+AGG 0.331520 4_2:+17059929 None:intergenic
TTTGCTTCTGCTGTTGTGAA+TGG 0.354727 4_2:-17063355 Msa0592020:three_prime_UTR
AATCTATTCAACTGAAGAAT+TGG 0.357508 4_2:-17059201 Msa0592020:three_prime_UTR
TTCATTCCCTATTAGACAAC+GGG 0.360140 4_2:-17061220 Msa0592020:three_prime_UTR
GCGGCGCGTGAGGAAGTTTC+CGG 0.361405 4_2:-17063487 Msa0592020:CDS
GAGAGAAAAGGCCCTATTAA+AGG 0.364810 4_2:-17060256 Msa0592020:three_prime_UTR
AACTGGTCCCGTGGTGCAAC+CGG 0.369241 4_2:+17059922 None:intergenic
AGGATGGCACCTCGACAAAA+TGG 0.371108 4_2:+17059896 None:intergenic
TCCTCACGCGCCGCCTTATA+CGG 0.371989 4_2:+17063496 None:intergenic
ACGCCTTACTAGAAGCTAAC+AGG 0.373800 4_2:-17060281 Msa0592020:three_prime_UTR
TCTCTTATAGGAAAGCAATA+TGG 0.375095 4_2:-17060062 Msa0592020:intron
AGAGGTACTATATTCTTATA+TGG 0.376146 4_2:-17059523 Msa0592020:three_prime_UTR
ACCGTGTCCACCGCCGTATA+AGG 0.380464 4_2:-17063509 Msa0592020:CDS
AGGACATTATGCAGATTTCC+TGG 0.380514 4_2:-17061089 Msa0592020:intron
GTGCAACCGGTTGCAGGATC+AGG 0.381813 4_2:+17059935 None:intergenic
GTGTCCGGATGCTGCTTGCT+TGG 0.389067 4_2:-17061022 Msa0592020:three_prime_UTR
CGCTTTCAATGTTGTTGGAC+CGG 0.390721 4_2:-17061963 Msa0592020:three_prime_UTR
AAGAGCCCCGTTGTCTAATA+GGG 0.391759 4_2:+17061214 None:intergenic
TGTGCTTCAACCGGTGGATA+CGG 0.393674 4_2:-17061188 Msa0592020:three_prime_UTR
CTGTTTGAGTCTTTGTAATC+CGG 0.395791 4_2:-17059499 Msa0592020:three_prime_UTR
AGACATCGACTTTGACATTC+CGG 0.396524 4_2:+17061944 None:intergenic
TGAATAGATTGACAAGTTCC+GGG 0.399754 4_2:+17059214 None:intergenic
TATGTCATTCTCCTTTAATA+GGG 0.400659 4_2:+17060245 None:intergenic
ATATGTAGCGGTGTTCTTCC+AGG 0.406530 4_2:+17061071 None:intergenic
CCTGCAACCGGTTGCACCAC+GGG 0.408050 4_2:-17059929 Msa0592020:three_prime_UTR
GATGGAAATTGTTGAAAGTA+TGG 0.408192 4_2:-17063329 Msa0592020:three_prime_UTR
GCTCTTGTTTGTGCTTCAAC+CGG 0.413267 4_2:-17061197 Msa0592020:three_prime_UTR
TTGTCAGCCATTGGCTCATT+CGG 0.419213 4_2:-17059755 Msa0592020:three_prime_UTR
AAAGTAAGTTGAAAATTAAT+GGG 0.422789 4_2:+17059259 None:intergenic
TTCAAATAATATGCTACTAT+AGG 0.429925 4_2:+17059594 None:intergenic
TGCATCACAGCCAACATTAA+CGG 0.430406 4_2:+17061757 None:intergenic
CTCCCCAAGCAAGCAGCATC+CGG 0.432906 4_2:+17061018 None:intergenic
TGTCTTGAATCGCCATAAAC+AGG 0.438427 4_2:-17061926 Msa0592020:intron
TCTTGGCAACATTTAATTGA+AGG 0.438454 4_2:+17059876 None:intergenic
ATTGGTATTTCAAAGTTTAG+TGG 0.443478 4_2:-17059183 Msa0592020:three_prime_UTR
GTCAAAGTTCAACCGATAAC+CGG 0.443975 4_2:+17059480 None:intergenic
GAATGATCTTAGTGATCGTT+CGG 0.447923 4_2:+17059554 None:intergenic
TGCCCGAAATCGCGGTGGGC+AGG 0.449083 4_2:-17063635 Msa0592020:CDS
TTAGGCGCTTTCAATGTTGT+TGG 0.450098 4_2:-17061968 Msa0592020:intron
AATCACCATTCATATGTCAT+TGG 0.450883 4_2:+17059640 None:intergenic
AGGCTTCAATTAGATTCCTC+CGG 0.459384 4_2:-17060990 Msa0592020:three_prime_UTR
TTAGTGATCGTTCGGACAAT+GGG 0.459711 4_2:+17059562 None:intergenic
AAGTTGAAAATTAATGGGTC+TGG 0.460766 4_2:+17059264 None:intergenic
TTCAAGAGTTTGTCAGCCAT+TGG 0.462380 4_2:-17059764 Msa0592020:three_prime_UTR
GGAAATAAGCAGTTAAGTAT+TGG 0.464188 4_2:+17063573 None:intergenic
ATCACTATCAGTCTTGATCT+TGG 0.466006 4_2:+17059859 None:intergenic
CTGATGAACTTTAGCGGAGA+TGG 0.469218 4_2:+17060339 None:intergenic
ATGTTGATGTTCAAATCTCT+TGG 0.469591 4_2:-17059378 Msa0592020:three_prime_UTR
GCCTTATACGGCGGTGGACA+CGG 0.470922 4_2:+17063508 None:intergenic
AAGAAGCCTGATCCTGCAAC+CGG 0.473327 4_2:-17059941 Msa0592020:three_prime_UTR
CAGTTAAGTATTGGATGGAT+TGG 0.478888 4_2:+17063582 None:intergenic
CCTCGACAAAATGGACAAAC+TGG 0.484711 4_2:+17059905 None:intergenic
TGACCTCAATTGTGCACACT+TGG 0.486372 4_2:+17060017 None:intergenic
GCACGTGAAGAAGTGGTTGC+CGG 0.493643 4_2:+17063468 None:intergenic
CTCCCTGTTAGCTTCTAGTA+AGG 0.494532 4_2:+17060278 None:intergenic
GTGCTTCAACCGGTGGATAC+GGG 0.495609 4_2:-17061187 Msa0592020:intron
TGCTTGCTTGGGGAGCAGAT+AGG 0.501868 4_2:-17061010 Msa0592020:three_prime_UTR
TGGAAGAACACCGCTACATA+TGG 0.502557 4_2:-17061069 Msa0592020:three_prime_UTR
AGTATTGGATGGATTGGTGA+TGG 0.502715 4_2:+17063588 None:intergenic
GCTGTGATGCATGGAAAGAC+TGG 0.505325 4_2:-17061745 Msa0592020:three_prime_UTR
TGTAAGTATATATGAGATGA+AGG 0.505326 4_2:-17059423 Msa0592020:three_prime_UTR
TTGGTTGGACTGAAGAAGTC+AGG 0.506869 4_2:+17063552 None:intergenic
CTTAGTGATCGTTCGGACAA+TGG 0.507024 4_2:+17059561 None:intergenic
AGCTCGCTGATGAACTTTAG+CGG 0.516523 4_2:+17060333 None:intergenic
ATAAGCAGTTAAGTATTGGA+TGG 0.519978 4_2:+17063577 None:intergenic
CTTGTTTGTGCTTCAACCGG+TGG 0.520146 4_2:-17061194 Msa0592020:three_prime_UTR
CGACCAAGTGTGCACAATTG+AGG 0.520454 4_2:-17060020 Msa0592020:three_prime_UTR
ACTAACCAAGAATCTGCAAC+AGG 0.521723 4_2:+17061421 None:intergenic
TTCTTAAGAGCAACTGTGAA+CGG 0.522067 4_2:+17060420 None:intergenic
TCCGGGTTGCAAATGAATCA+TGG 0.523375 4_2:+17059231 None:intergenic
GTGGTTCTGTGGACTGTGTC+CGG 0.525522 4_2:-17061037 Msa0592020:three_prime_UTR
TCCATGATTCATTTGCAACC+CGG 0.526182 4_2:-17059232 Msa0592020:three_prime_UTR
GGCTTCAATTAGATTCCTCC+GGG 0.526424 4_2:-17060989 Msa0592020:intron
AGTATGGTTGAGGGTGATGT+TGG 0.527132 4_2:-17063313 Msa0592020:three_prime_UTR
CGCCTTACTAGAAGCTAACA+GGG 0.528470 4_2:-17060280 Msa0592020:three_prime_UTR
TAAGTCTTGATGATTGCTGA+TGG 0.529306 4_2:-17059674 Msa0592020:three_prime_UTR
AACAAGAGGTGCGGCTGATG+AGG 0.531096 4_2:+17060365 None:intergenic
AGCTAACAGGGAGAGAGAAA+AGG 0.531496 4_2:-17060268 Msa0592020:three_prime_UTR
GGCAACATTTAATTGAAGGA+TGG 0.535795 4_2:+17059880 None:intergenic
AGAAAATCAAATTTCAGCGA+AGG 0.537043 4_2:-17059797 Msa0592020:three_prime_UTR
CGGCTGATGAGGGATCGAGC+AGG 0.540258 4_2:+17060376 None:intergenic
TCTTGAGGCAGCATAGTGCT+AGG 0.541497 4_2:+17059960 None:intergenic
TTGCAGGATCAGGCTTCTTG+AGG 0.542464 4_2:+17059945 None:intergenic
AACTGCGGCTGAGTAATGAT+AGG 0.543032 4_2:-17059100 Msa0592020:three_prime_UTR
GTGATGGGAATATGTTGTCT+TGG 0.543188 4_2:+17063604 None:intergenic
GAAAATCAAATTTCAGCGAA+GGG 0.543834 4_2:-17059796 Msa0592020:three_prime_UTR
TGCTGTTGTGAATGGTGAGA+TGG 0.545702 4_2:-17063347 Msa0592020:three_prime_UTR
CAGCCATTGGCTCATTCGGA+AGG 0.547162 4_2:-17059751 Msa0592020:three_prime_UTR
GACGCTCGCAGCTTGAATGA+AGG 0.548350 4_2:+17059337 None:intergenic
GGCGGCTCGTGGTGGTTCTG+TGG 0.548964 4_2:-17061048 Msa0592020:three_prime_UTR
ACAAGAGGTGCGGCTGATGA+GGG 0.550454 4_2:+17060366 None:intergenic
AACTACCTCGATCCGACCAT+TGG 0.550881 4_2:+17063234 None:intergenic
ATCCATTAAAGAGAGGAAAT+GGG 0.550890 4_2:-17063436 Msa0592020:three_prime_UTR
TGCTTCCAATGACATATGAA+TGG 0.552209 4_2:-17059645 Msa0592020:three_prime_UTR
AAGATCATTCAAGACAATAG+AGG 0.554487 4_2:-17059541 Msa0592020:three_prime_UTR
ATGGAAAAGCTTATTCAAGC+TGG 0.555583 4_2:-17061718 Msa0592020:three_prime_UTR
CTTCATTTAGCAGCTGCCAA+TGG 0.555784 4_2:-17063250 Msa0592020:three_prime_UTR
AATTGTTGAAAGTATGGTTG+AGG 0.557107 4_2:-17063323 Msa0592020:three_prime_UTR
AGCTTCAAATATATTGTTTG+GGG 0.558178 4_2:-17059065 Msa0592020:three_prime_UTR
GTCCGGATGCTGCTTGCTTG+GGG 0.558568 4_2:-17061020 Msa0592020:three_prime_UTR
GCCGTATAAGGCGGCGCGTG+AGG 0.561570 4_2:-17063497 Msa0592020:CDS
AGCAGCAAGGTGCAGCGGCG+TGG 0.564799 4_2:+17061265 None:intergenic
CGCGCCGCCTTATACGGCGG+TGG 0.566442 4_2:+17063502 None:intergenic
AATCAATCGAGTTGTGTGGT+GGG 0.566878 4_2:-17063409 Msa0592020:three_prime_UTR
TCACGCGCCGCCTTATACGG+CGG 0.569594 4_2:+17063499 None:intergenic
CTACATATGGCGGCTCGTGG+TGG 0.570162 4_2:-17061056 Msa0592020:three_prime_UTR
GCGTCTGATGACACACGGCA+TGG 0.570443 4_2:-17059319 Msa0592020:three_prime_UTR
GTGAACATAAGAGATGGAAA+TGG 0.571705 4_2:-17061290 Msa0592020:three_prime_UTR
TCAGAACGTAGTGGAGATGA+AGG 0.572443 4_2:+17060222 None:intergenic
CGTTGTCTAATAGGGAATGA+AGG 0.572603 4_2:+17061222 None:intergenic
ACAAGTAGCACGTGAAGAAG+TGG 0.573255 4_2:+17063461 None:intergenic
CGGTCAGCTGCCCGAAATCG+CGG 0.576029 4_2:-17063643 Msa0592020:CDS
TCTCTAGACACCGTTAATGT+TGG 0.577223 4_2:-17061767 Msa0592020:intron
CAAGTATGATGATATTGTCT+CGG 0.577587 4_2:-17060196 Msa0592020:three_prime_UTR
CGCTAGTCGCAATTCAGGAA+AGG 0.581409 4_2:-17059726 Msa0592020:three_prime_UTR
GAATCAATCGAGTTGTGTGG+TGG 0.581898 4_2:-17063410 Msa0592020:three_prime_UTR
GCATGGAAAGACTGGTTGCA+TGG 0.582253 4_2:-17061737 Msa0592020:three_prime_UTR
ATCAATCGAGTTGTGTGGTG+GGG 0.584222 4_2:-17063408 Msa0592020:three_prime_UTR
CTTGTTGATCCATTAAAGAG+AGG 0.584354 4_2:-17063443 Msa0592020:exon
ACCTTGCTGCTCGTCATAGA+CGG 0.587192 4_2:-17061253 Msa0592020:three_prime_UTR
ATTGTTGAAAGTATGGTTGA+GGG 0.588694 4_2:-17063322 Msa0592020:three_prime_UTR
ATTTAGCAGCTGCCAATGGT+CGG 0.589763 4_2:-17063246 Msa0592020:three_prime_UTR
CGATTATTACCCGTATCCAC+CGG 0.590839 4_2:+17061178 None:intergenic
GTTGCTTAGATACTCTGCAC+AGG 0.591492 4_2:-17059127 Msa0592020:three_prime_UTR
TCAGCTGCCCGAAATCGCGG+TGG 0.597081 4_2:-17063640 Msa0592020:CDS
GGCTGATGAGGGATCGAGCA+GGG 0.598983 4_2:+17060377 None:intergenic
CTTGAGGCAGCATAGTGCTA+GGG 0.599231 4_2:+17059961 None:intergenic
TTGATGCCGAAAAGCAATGA+GGG 0.600242 4_2:-17059703 Msa0592020:three_prime_UTR
TCCTGCAACCGGTTGCACCA+CGG 0.601001 4_2:-17059930 Msa0592020:three_prime_UTR
TTGGCAGCTGCTAAATGAAG+AGG 0.601943 4_2:+17063253 None:intergenic
CGAGCTCAATCAAGAAGCCA+AGG 0.607931 4_2:-17060316 Msa0592020:three_prime_UTR
TTAATGTTGGCTGTGATGCA+TGG 0.609200 4_2:-17061754 Msa0592020:three_prime_UTR
TGACGAGCAGCAAGGTGCAG+CGG 0.609387 4_2:+17061260 None:intergenic
AGATTTGTGAACATAAGAGA+TGG 0.609907 4_2:-17061296 Msa0592020:three_prime_UTR
ATCAACATACTCACGCGCCA+AGG 0.610169 4_2:+17059393 None:intergenic
AGCGGAGATGGCCAAACAAG+AGG 0.611353 4_2:+17060351 None:intergenic
TCAATCGAGTTGTGTGGTGG+GGG 0.613318 4_2:-17063407 Msa0592020:three_prime_UTR
GTATTGGATGGATTGGTGAT+GGG 0.613897 4_2:+17063589 None:intergenic
CGTCTGATGACACACGGCAT+GGG 0.614317 4_2:-17059318 Msa0592020:three_prime_UTR
GATCCTTCCGAATGAGCCAA+TGG 0.614518 4_2:+17059748 None:intergenic
CTTCATTCCCTATTAGACAA+CGG 0.614895 4_2:-17061221 Msa0592020:three_prime_UTR
CCAGTCCAACAAAACCAAGA+AGG 0.616065 4_2:-17059823 Msa0592020:three_prime_UTR
CCGCTACATATGGCGGCTCG+TGG 0.616354 4_2:-17061059 Msa0592020:three_prime_UTR
TGATATTGTCTCGGATTCTG+AGG 0.617221 4_2:-17060187 Msa0592020:intron
CAGCTGCCCGAAATCGCGGT+GGG 0.617694 4_2:-17063639 Msa0592020:CDS
GCACACATTTGATGATCACA+AGG 0.625070 4_2:+17059992 None:intergenic
ATAAGCAGCATAGTGCAAGC+AGG 0.631181 4_2:+17061495 None:intergenic
GTGTCCACCGCCGTATAAGG+CGG 0.633987 4_2:-17063506 Msa0592020:CDS
AAATGGACAAACTGGTCCCG+TGG 0.640279 4_2:+17059913 None:intergenic
AGATGGCCAAACAAGAGGTG+CGG 0.640644 4_2:+17060356 None:intergenic
AGCTGCCAATGGTCGGATCG+AGG 0.641596 4_2:-17063239 Msa0592020:intron
TAGCCTTTAATGAATCTACA+TGG 0.650370 4_2:+17061467 None:intergenic
GTTGATGCCGAAAAGCAATG+AGG 0.652343 4_2:-17059704 Msa0592020:three_prime_UTR
AAGAACACCGCTACATATGG+CGG 0.654317 4_2:-17061066 Msa0592020:three_prime_UTR
CTCTGCACAGGTTATAACTG+CGG 0.672859 4_2:-17059115 Msa0592020:three_prime_UTR
TGCGAGCGTCTGATGACACA+CGG 0.673664 4_2:-17059324 Msa0592020:three_prime_UTR
CCACGAGCCGCCATATGTAG+CGG 0.686938 4_2:+17061059 None:intergenic
GCCGTCTATGACGAGCAGCA+AGG 0.687428 4_2:+17061252 None:intergenic
TACTTGCTATCAGAACGTAG+TGG 0.708760 4_2:+17060213 None:intergenic
TCAGAATCAATCGAGTTGTG+TGG 0.722101 4_2:-17063413 Msa0592020:three_prime_UTR
TCATTCCCTATTAGACAACG+GGG 0.780882 4_2:-17061219 Msa0592020:three_prime_UTR
TTATACGGCGGTGGACACGG+TGG 0.790944 4_2:+17063511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTAATTTTAAA+TGG - chr4_2:17062236-17062255 Msa0592020:intron 0.0%
!! ATTTACTTAAATTATACATA+TGG - chr4_2:17059942-17059961 Msa0592020:three_prime_UTR 10.0%
!!! TTTTTGAAAAAATTACATTT+TGG - chr4_2:17060484-17060503 Msa0592020:intron 10.0%
!!! ATTTTTTCTAAAATCTATTT+TGG + chr4_2:17060608-17060627 None:intergenic 10.0%
!! AAATTATATCATAAAAAACT+AGG - chr4_2:17062169-17062188 Msa0592020:intron 10.0%
!!! CTTTTTATGTTTTATATTAT+AGG - chr4_2:17064062-17064081 Msa0592020:intron 10.0%
!!! TTTTTTCTTAGATAATTCAA+AGG + chr4_2:17059189-17059208 None:intergenic 15.0%
!! TGATTAAAATTAAGTTTGAA+AGG + chr4_2:17060785-17060804 None:intergenic 15.0%
!!! ACTTCTAAATAATAGTTTTA+TGG + chr4_2:17060898-17060917 None:intergenic 15.0%
!! ATATACTTACACTTTATATT+TGG + chr4_2:17063624-17063643 None:intergenic 15.0%
!!! AAAGTAAGTTGAAAATTAAT+GGG + chr4_2:17063800-17063819 None:intergenic 15.0%
!!! AAAAGTAAGTTGAAAATTAA+TGG + chr4_2:17063801-17063820 None:intergenic 15.0%
!!! TTAATTTTCAACTTACTTTT+TGG - chr4_2:17063801-17063820 Msa0592020:intron 15.0%
!!! TATAGGTTTAAATATGTTTT+TGG - chr4_2:17064079-17064098 Msa0592020:intron 15.0%
!!! TGTTATTTCTCTTAAATAGA+AGG + chr4_2:17059023-17059042 None:intergenic 20.0%
!!! AAAAAAGTGAGTTTAAAACA+TGG + chr4_2:17059265-17059284 None:intergenic 20.0%
!!! CTTAACTTTTGAAAATATCT+TGG + chr4_2:17059320-17059339 None:intergenic 20.0%
!! ACTTAAATTATACATATGGT+TGG - chr4_2:17059946-17059965 Msa0592020:three_prime_UTR 20.0%
!!! GAACTTTTTATGACTATATT+TGG - chr4_2:17060163-17060182 Msa0592020:intron 20.0%
!!! GTTGAAAAGTTTATTTTTAG+TGG - chr4_2:17060368-17060387 Msa0592020:three_prime_UTR 20.0%
!!! TTGAAAAAATTACATTTTGG+AGG - chr4_2:17060487-17060506 Msa0592020:intron 20.0%
!!! AGATGTTTTTTTTGCTTTAA+AGG - chr4_2:17060630-17060649 Msa0592020:intron 20.0%
!!! TCATATTAAACGCATTTTAA+GGG - chr4_2:17061403-17061422 Msa0592020:intron 20.0%
!!! TTTTAAGGGTAAAATTTAGT+TGG - chr4_2:17061417-17061436 Msa0592020:intron 20.0%
!! AATCATAGATTCTAAATCAA+TGG - chr4_2:17062136-17062155 Msa0592020:intron 20.0%
!! TATGATATAATTTACACATG+TGG + chr4_2:17062162-17062181 None:intergenic 20.0%
!! TATATCATAAAAAACTAGGA+AGG - chr4_2:17062173-17062192 Msa0592020:intron 20.0%
!!! ATAATTTGCTTTTAAAATGC+CGG + chr4_2:17062214-17062233 None:intergenic 20.0%
!! TAGTCAAACTATAATTCAAA+AGG + chr4_2:17062481-17062500 None:intergenic 20.0%
!!! ACAAGAGTTAAATTTTACTA+AGG + chr4_2:17062592-17062611 None:intergenic 20.0%
!! ATTATAAGTTACTTATTTGC+TGG - chr4_2:17062966-17062985 Msa0592020:intron 20.0%
!! TTCAAATAATATGCTACTAT+AGG + chr4_2:17063465-17063484 None:intergenic 20.0%
!! AAAGCTTCAAATATATTGTT+TGG - chr4_2:17063989-17064008 Msa0592020:intron 20.0%
!! AAGCTTCAAATATATTGTTT+GGG - chr4_2:17063990-17064009 Msa0592020:intron 20.0%
!! CATTTTATTATGTTTAAGCG+TGG - chr4_2:17059112-17059131 Msa0592020:three_prime_UTR 25.0%
! ATTCTAAGCAAAAACAACTT+CGG - chr4_2:17059393-17059412 Msa0592020:three_prime_UTR 25.0%
! ATAACCAACTATATCTATCA+GGG + chr4_2:17060039-17060058 None:intergenic 25.0%
! ACAAGATACTAACACATATA+CGG + chr4_2:17060088-17060107 None:intergenic 25.0%
!!! AAGCTAATTTAGGTCATTTT+TGG - chr4_2:17060317-17060336 Msa0592020:three_prime_UTR 25.0%
!!! TTAACTTTCTTTTCAAGTGT+TGG - chr4_2:17060346-17060365 Msa0592020:three_prime_UTR 25.0%
! TTTCTTGTATTGAACAAACT+TGG - chr4_2:17061224-17061243 Msa0592020:three_prime_UTR 25.0%
! TAGAGACTCAAAAAGAAAAA+GGG + chr4_2:17061275-17061294 None:intergenic 25.0%
!! CTCATATTAAACGCATTTTA+AGG - chr4_2:17061402-17061421 Msa0592020:intron 25.0%
! TGTTAATCTTAGACGAAAAT+TGG - chr4_2:17061913-17061932 Msa0592020:intron 25.0%
! AAGTATGAAATACCAAATAG+AGG + chr4_2:17062388-17062407 None:intergenic 25.0%
! TATGTCATTCTCCTTTAATA+GGG + chr4_2:17062814-17062833 None:intergenic 25.0%
! CCAATTATCCAAAAAATCAA+AGG + chr4_2:17062906-17062925 None:intergenic 25.0%
!!! CCTTTGATTTTTTGGATAAT+TGG - chr4_2:17062903-17062922 Msa0592020:intron 25.0%
!!! AGAGGTACTATATTCTTATA+TGG - chr4_2:17063533-17063552 Msa0592020:CDS 25.0%
! TGTAAGTATATATGAGATGA+AGG - chr4_2:17063633-17063652 Msa0592020:CDS 25.0%
! AATCTATTCAACTGAAGAAT+TGG - chr4_2:17063855-17063874 Msa0592020:intron 25.0%
! ATTGGTATTTCAAAGTTTAG+TGG - chr4_2:17063873-17063892 Msa0592020:intron 25.0%
! AGCTTCAAATATATTGTTTG+GGG - chr4_2:17063991-17064010 Msa0592020:intron 25.0%
!!! CAATATATTTTTCAACTCAC+AGG + chr4_2:17064029-17064048 None:intergenic 25.0%
TGCGATAAATATGTCTGAAT+TGG + chr4_2:17058992-17059011 None:intergenic 30.0%
! ATCAATTGATAGCAGACAAT+AGG - chr4_2:17059224-17059243 Msa0592020:three_prime_UTR 30.0%
TGCTTAGAATCAAAGATGAA+TGG + chr4_2:17059383-17059402 None:intergenic 30.0%
!! ATAAGCAGTTAAGTATTGGA+TGG + chr4_2:17059482-17059501 None:intergenic 30.0%
GGAAATAAGCAGTTAAGTAT+TGG + chr4_2:17059486-17059505 None:intergenic 30.0%
ATCCATTAAAGAGAGGAAAT+GGG - chr4_2:17059620-17059639 Msa0592020:three_prime_UTR 30.0%
GATGGAAATTGTTGAAAGTA+TGG - chr4_2:17059727-17059746 Msa0592020:three_prime_UTR 30.0%
! AATTGTTGAAAGTATGGTTG+AGG - chr4_2:17059733-17059752 Msa0592020:three_prime_UTR 30.0%
! ATTGTTGAAAGTATGGTTGA+GGG - chr4_2:17059734-17059753 Msa0592020:three_prime_UTR 30.0%
TAACCAACTATATCTATCAG+GGG + chr4_2:17060038-17060057 None:intergenic 30.0%
CATAACCAACTATATCTATC+AGG + chr4_2:17060040-17060059 None:intergenic 30.0%
!!! ATAGAGAAGTGTTTTGTGAT+TGG - chr4_2:17060131-17060150 Msa0592020:intron 30.0%
!!! TTTGGATTAGTTTTTAGCTC+AGG - chr4_2:17060181-17060200 Msa0592020:intron 30.0%
GAGTTGACTAAAGCTAATTT+AGG - chr4_2:17060307-17060326 Msa0592020:three_prime_UTR 30.0%
ATTGATGAGTTTATTCAGAG+TGG - chr4_2:17060423-17060442 Msa0592020:three_prime_UTR 30.0%
CTAAATGTATCTTTGGATTG+TGG - chr4_2:17060448-17060467 Msa0592020:intron 30.0%
!! TTATCTTTGTCATTGACTCT+TGG - chr4_2:17061065-17061084 Msa0592020:three_prime_UTR 30.0%
!! TTTCTATACGCATTTCTAGT+TGG - chr4_2:17061178-17061197 Msa0592020:intron 30.0%
! AGAAAGTGCAGAAATTACAA+AGG + chr4_2:17061209-17061228 None:intergenic 30.0%
CTAGAGACTCAAAAAGAAAA+AGG + chr4_2:17061276-17061295 None:intergenic 30.0%
TAGCCTTTAATGAATCTACA+TGG + chr4_2:17061592-17061611 None:intergenic 30.0%
TGAGAACATACAAATACGAA+TGG - chr4_2:17061694-17061713 Msa0592020:intron 30.0%
AGATTTGTGAACATAAGAGA+TGG - chr4_2:17061760-17061779 Msa0592020:three_prime_UTR 30.0%
TCTTCATTAAGACTGATCAA+AGG - chr4_2:17061947-17061966 Msa0592020:three_prime_UTR 30.0%
GAAACATATGTTTACTTACC+CGG + chr4_2:17062088-17062107 None:intergenic 30.0%
AAGGTTTCATGATTAATTGC+CGG - chr4_2:17062192-17062211 Msa0592020:intron 30.0%
!!! TTGACACTACATGCTATTTT+TGG - chr4_2:17062341-17062360 Msa0592020:intron 30.0%
!!! TGACACTACATGCTATTTTT+GGG - chr4_2:17062342-17062361 Msa0592020:intron 30.0%
TACTTCTTTGAACCTCTATT+TGG - chr4_2:17062373-17062392 Msa0592020:intron 30.0%
! TGAATTGATTAGCTGAAAAC+AGG - chr4_2:17062423-17062442 Msa0592020:intron 30.0%
CTTGTGTAAATATTCTTTGC+AGG - chr4_2:17062607-17062626 Msa0592020:intron 30.0%
GTATGTCATTCTCCTTTAAT+AGG + chr4_2:17062815-17062834 None:intergenic 30.0%
CAAGTATGATGATATTGTCT+CGG - chr4_2:17062860-17062879 Msa0592020:intron 30.0%
!! TTGCTGGTTATTTCTCTTAT+AGG - chr4_2:17062982-17063001 Msa0592020:intron 30.0%
TCTCTTATAGGAAAGCAATA+TGG - chr4_2:17062994-17063013 Msa0592020:intron 30.0%
TCTTGGCAACATTTAATTGA+AGG + chr4_2:17063183-17063202 None:intergenic 30.0%
!! TTTGATTTTCTTGACCTTCT+TGG + chr4_2:17063250-17063269 None:intergenic 30.0%
AGAAAATCAAATTTCAGCGA+AGG - chr4_2:17063259-17063278 Msa0592020:three_prime_UTR 30.0%
GAAAATCAAATTTCAGCGAA+GGG - chr4_2:17063260-17063279 Msa0592020:three_prime_UTR 30.0%
AATCACCATTCATATGTCAT+TGG + chr4_2:17063419-17063438 None:intergenic 30.0%
AAGATCATTCAAGACAATAG+AGG - chr4_2:17063515-17063534 Msa0592020:CDS 30.0%
ATGTTGATGTTCAAATCTCT+TGG - chr4_2:17063678-17063697 Msa0592020:intron 30.0%
! AAGTTGAAAATTAATGGGTC+TGG + chr4_2:17063795-17063814 None:intergenic 30.0%
TTGAATAGATTGACAAGTTC+CGG + chr4_2:17063846-17063865 None:intergenic 30.0%
!! CAGTTAAGTATTGGATGGAT+TGG + chr4_2:17059477-17059496 None:intergenic 35.0%
CTTGTTGATCCATTAAAGAG+AGG - chr4_2:17059613-17059632 Msa0592020:three_prime_UTR 35.0%
GATCCATTAAAGAGAGGAAA+TGG - chr4_2:17059619-17059638 Msa0592020:three_prime_UTR 35.0%
ATAACCAACCATATGTACCA+GGG + chr4_2:17059914-17059933 None:intergenic 35.0%
!! ATCTTTAATCAGAAGTGTCG+AGG + chr4_2:17059979-17059998 None:intergenic 35.0%
CTTCTGATTAAAGATGTGTC+TGG - chr4_2:17059984-17060003 Msa0592020:three_prime_UTR 35.0%
ATGAATCACTGACACAAACA+CGG + chr4_2:17060113-17060132 None:intergenic 35.0%
!! GAAGTGTTTTGTGATTGGTT+TGG - chr4_2:17060136-17060155 Msa0592020:intron 35.0%
!! AGTGGCTCTAAATGTATCTT+TGG - chr4_2:17060441-17060460 Msa0592020:intron 35.0%
AAACTAAACAAACACACGCT+TGG + chr4_2:17060551-17060570 None:intergenic 35.0%
! CGTGTGTTTGTTTAGTTTCA+TGG - chr4_2:17060553-17060572 Msa0592020:intron 35.0%
GAAAGGAAATGACTTACGTT+TGG + chr4_2:17060768-17060787 None:intergenic 35.0%
GTTGAGAAGTTTACAGAAAG+TGG - chr4_2:17060963-17060982 Msa0592020:intron 35.0%
AAACATGAGAGATGCACAAA+GGG + chr4_2:17061047-17061066 None:intergenic 35.0%
TAAACATGAGAGATGCACAA+AGG + chr4_2:17061048-17061067 None:intergenic 35.0%
!! TTTGTCATTGACTCTTGGTT+AGG - chr4_2:17061070-17061089 Msa0592020:three_prime_UTR 35.0%
ATGGAAAAGCTTATTCAAGC+TGG - chr4_2:17061338-17061357 Msa0592020:intron 35.0%
!! TTGTGTTGATGATTGGTTAG+TGG - chr4_2:17061463-17061482 Msa0592020:three_prime_UTR 35.0%
! TTGCACTATGCTGCTTATTA+TGG - chr4_2:17061566-17061585 Msa0592020:intron 35.0%
TGGCCATGTAGATTCATTAA+AGG - chr4_2:17061586-17061605 Msa0592020:intron 35.0%
GTCAAAATCATTGAACGGTT+TGG + chr4_2:17061728-17061747 None:intergenic 35.0%
!! AACCGTTCAATGATTTTGAC+AGG - chr4_2:17061728-17061747 Msa0592020:three_prime_UTR 35.0%
!! ACCGTTCAATGATTTTGACA+GGG - chr4_2:17061729-17061748 Msa0592020:three_prime_UTR 35.0%
GTGAACATAAGAGATGGAAA+TGG - chr4_2:17061766-17061785 Msa0592020:intron 35.0%
CTTCATTCCCTATTAGACAA+CGG - chr4_2:17061835-17061854 Msa0592020:intron 35.0%
TTCATTCCCTATTAGACAAC+GGG - chr4_2:17061836-17061855 Msa0592020:intron 35.0%
TTCTTAAGAGCAACTGTGAA+CGG + chr4_2:17062639-17062658 None:intergenic 35.0%
!! TAGTAAGGCGTTTTCCAATA+AGG + chr4_2:17062766-17062785 None:intergenic 35.0%
!!! AGCGTCTTCCTTTGATTTTT+TGG - chr4_2:17062895-17062914 Msa0592020:intron 35.0%
GGCAACATTTAATTGAAGGA+TGG + chr4_2:17063179-17063198 None:intergenic 35.0%
ATCACTATCAGTCTTGATCT+TGG + chr4_2:17063200-17063219 None:intergenic 35.0%
!! AGAAATCCCTCATTGCTTTT+CGG + chr4_2:17063362-17063381 None:intergenic 35.0%
! TAAGTCTTGATGATTGCTGA+TGG - chr4_2:17063382-17063401 Msa0592020:three_prime_UTR 35.0%
TGCTTCCAATGACATATGAA+TGG - chr4_2:17063411-17063430 Msa0592020:three_prime_UTR 35.0%
GAATGATCTTAGTGATCGTT+CGG + chr4_2:17063505-17063524 None:intergenic 35.0%
CTGTTTGAGTCTTTGTAATC+CGG - chr4_2:17063557-17063576 Msa0592020:CDS 35.0%
AGTCTTTGTAATCCGGTTAT+CGG - chr4_2:17063564-17063583 Msa0592020:CDS 35.0%
!!! GAGATGAAGGTATTTTTCCT+TGG - chr4_2:17063646-17063665 Msa0592020:CDS 35.0%
TGAATAGATTGACAAGTTCC+GGG + chr4_2:17063845-17063864 None:intergenic 35.0%
CAGACAATAGGAGACATTCT+TGG - chr4_2:17059236-17059255 Msa0592020:three_prime_UTR 40.0%
! GTGATGGGAATATGTTGTCT+TGG + chr4_2:17059455-17059474 None:intergenic 40.0%
!! GTATTGGATGGATTGGTGAT+GGG + chr4_2:17059470-17059489 None:intergenic 40.0%
!! AGTATTGGATGGATTGGTGA+TGG + chr4_2:17059471-17059490 None:intergenic 40.0%
!!! TTTTGGTAAGTTGGGTTGGT+TGG + chr4_2:17059522-17059541 None:intergenic 40.0%
!!! GTGTTTTTGGTAAGTTGGGT+TGG + chr4_2:17059526-17059545 None:intergenic 40.0%
!!! GGTGGTGTTTTTGGTAAGTT+GGG + chr4_2:17059530-17059549 None:intergenic 40.0%
GACCCATTTCCTCTCTTTAA+TGG + chr4_2:17059625-17059644 None:intergenic 40.0%
! TCAGAATCAATCGAGTTGTG+TGG - chr4_2:17059643-17059662 Msa0592020:three_prime_UTR 40.0%
! AATCAATCGAGTTGTGTGGT+GGG - chr4_2:17059647-17059666 Msa0592020:three_prime_UTR 40.0%
TTTGCTTCTGCTGTTGTGAA+TGG - chr4_2:17059701-17059720 Msa0592020:three_prime_UTR 40.0%
!! GGTGTTTTGGATAGTACTGT+TGG - chr4_2:17059764-17059783 Msa0592020:three_prime_UTR 40.0%
TCTGGTGTTCCATATGTATC+AGG - chr4_2:17059877-17059896 Msa0592020:three_prime_UTR 40.0%
CTGGTGTTCCATATGTATCA+GGG - chr4_2:17059878-17059897 Msa0592020:three_prime_UTR 40.0%
CATAACCAACCATATGTACC+AGG + chr4_2:17059915-17059934 None:intergenic 40.0%
TCTGGTGTTCCATATGTATC+AGG - chr4_2:17059877-17059896 Msa0592020:three_prime_UTR 40.0%
CTGGTGTTCCATATGTATCA+GGG - chr4_2:17059878-17059897 Msa0592020:three_prime_UTR 40.0%
TGTTCCATATGTATCAGGGT+CGG - chr4_2:17059882-17059901 Msa0592020:three_prime_UTR 40.0%
! TTTTAGTGGCTGTATAGCGT+TGG - chr4_2:17060382-17060401 Msa0592020:three_prime_UTR 40.0%
!! TACATTTTGGAGGTTCAACG+AGG - chr4_2:17060497-17060516 Msa0592020:intron 40.0%
TACGTTTGATACGTTGATCC+AGG - chr4_2:17060838-17060857 Msa0592020:intron 40.0%
GCATTAATAACAAGTGTGCC+TGG + chr4_2:17060859-17060878 None:intergenic 40.0%
!! TTACAGAAAGTGGCTCTAAG+CGG - chr4_2:17060973-17060992 Msa0592020:intron 40.0%
TTAGGCGCTTTCAATGTTGT+TGG - chr4_2:17061088-17061107 Msa0592020:intron 40.0%
!! AGACATCGACTTTGACATTC+CGG + chr4_2:17061115-17061134 None:intergenic 40.0%
TGTCTTGAATCGCCATAAAC+AGG - chr4_2:17061130-17061149 Msa0592020:intron 40.0%
CATAGACACACACCTGTTTA+TGG + chr4_2:17061145-17061164 None:intergenic 40.0%
GGCACAACAAGAATCAGAAT+TGG + chr4_2:17061254-17061273 None:intergenic 40.0%
TCTCTAGACACCGTTAATGT+TGG - chr4_2:17061289-17061308 Msa0592020:three_prime_UTR 40.0%
TGCATCACAGCCAACATTAA+CGG + chr4_2:17061302-17061321 None:intergenic 40.0%
! TTAATGTTGGCTGTGATGCA+TGG - chr4_2:17061302-17061321 Msa0592020:three_prime_UTR 40.0%
!! GTAGCGATTGTGTTGATGAT+TGG - chr4_2:17061456-17061475 Msa0592020:three_prime_UTR 40.0%
GTTAGTGGTTACTCAATCAG+AGG - chr4_2:17061478-17061497 Msa0592020:three_prime_UTR 40.0%
ACTAACCAAGAATCTGCAAC+AGG + chr4_2:17061638-17061657 None:intergenic 40.0%
! CTTGGTTAGTCACTCTTTCA+TGG - chr4_2:17061648-17061667 Msa0592020:intron 40.0%
ACATGACACATCCATAGATG+GGG + chr4_2:17061675-17061694 None:intergenic 40.0%
CACATGACACATCCATAGAT+GGG + chr4_2:17061676-17061695 None:intergenic 40.0%
TCACATGACACATCCATAGA+TGG + chr4_2:17061677-17061696 None:intergenic 40.0%
CCCCTGTCAAAATCATTGAA+CGG + chr4_2:17061733-17061752 None:intergenic 40.0%
!! CCGTTCAATGATTTTGACAG+GGG - chr4_2:17061730-17061749 Msa0592020:three_prime_UTR 40.0%
!! CGTTCAATGATTTTGACAGG+GGG - chr4_2:17061731-17061750 Msa0592020:three_prime_UTR 40.0%
CGTTGTCTAATAGGGAATGA+AGG + chr4_2:17061837-17061856 None:intergenic 40.0%
TCATTCCCTATTAGACAACG+GGG - chr4_2:17061837-17061856 Msa0592020:intron 40.0%
AGGACATTATGCAGATTTCC+TGG - chr4_2:17061967-17061986 Msa0592020:three_prime_UTR 40.0%
AGGCTTCAATTAGATTCCTC+CGG - chr4_2:17062066-17062085 Msa0592020:intron 40.0%
ACATATGTTTACTTACCCGG+AGG + chr4_2:17062085-17062104 None:intergenic 40.0%
GAGAGAAAAGGCCCTATTAA+AGG - chr4_2:17062800-17062819 Msa0592020:intron 40.0%
!! TACTTGCTATCAGAACGTAG+TGG + chr4_2:17062846-17062865 None:intergenic 40.0%
TGATATTGTCTCGGATTCTG+AGG - chr4_2:17062869-17062888 Msa0592020:intron 40.0%
! GCACACATTTGATGATCACA+AGG + chr4_2:17063067-17063086 None:intergenic 40.0%
!!! CTTGACCTTCTTGGTTTTGT+TGG + chr4_2:17063241-17063260 None:intergenic 40.0%
TTCAAGAGTTTGTCAGCCAT+TGG - chr4_2:17063292-17063311 Msa0592020:three_prime_UTR 40.0%
TTGATGCCGAAAAGCAATGA+GGG - chr4_2:17063353-17063372 Msa0592020:three_prime_UTR 40.0%
!! TGGTGATTTTACACTTGCTG+TGG - chr4_2:17063431-17063450 Msa0592020:three_prime_UTR 40.0%
TTAGTGATCGTTCGGACAAT+GGG + chr4_2:17063497-17063516 None:intergenic 40.0%
GTCAAAGTTCAACCGATAAC+CGG + chr4_2:17063579-17063598 None:intergenic 40.0%
TCCATGATTCATTTGCAACC+CGG - chr4_2:17063824-17063843 Msa0592020:intron 40.0%
TTGGTTGGACTGAAGAAGTC+AGG + chr4_2:17059507-17059526 None:intergenic 45.0%
!!! CGGTGGTGTTTTTGGTAAGT+TGG + chr4_2:17059531-17059550 None:intergenic 45.0%
ACAAGTAGCACGTGAAGAAG+TGG + chr4_2:17059598-17059617 None:intergenic 45.0%
! GAATCAATCGAGTTGTGTGG+TGG - chr4_2:17059646-17059665 Msa0592020:three_prime_UTR 45.0%
! ATCAATCGAGTTGTGTGGTG+GGG - chr4_2:17059648-17059667 Msa0592020:three_prime_UTR 45.0%
TGCTGTTGTGAATGGTGAGA+TGG - chr4_2:17059709-17059728 Msa0592020:three_prime_UTR 45.0%
AGTATGGTTGAGGGTGATGT+TGG - chr4_2:17059743-17059762 Msa0592020:three_prime_UTR 45.0%
!! TGAGGGTGATGTTGGTGTTT+TGG - chr4_2:17059751-17059770 Msa0592020:three_prime_UTR 45.0%
TTGGCAGCTGCTAAATGAAG+AGG + chr4_2:17059806-17059825 None:intergenic 45.0%
CTTCATTTAGCAGCTGCCAA+TGG - chr4_2:17059806-17059825 Msa0592020:three_prime_UTR 45.0%
ATTTAGCAGCTGCCAATGGT+CGG - chr4_2:17059810-17059829 Msa0592020:three_prime_UTR 45.0%
CTTCTGATTGAAGACGTGTC+TGG - chr4_2:17059859-17059878 Msa0592020:three_prime_UTR 45.0%
AGTTCCGACCCTGATACATA+TGG + chr4_2:17060014-17060033 None:intergenic 45.0%
CTGCCCCTGATAGATATAGT+TGG - chr4_2:17060032-17060051 Msa0592020:three_prime_UTR 45.0%
TTGGAGGTTCAACGAGGTTA+TGG - chr4_2:17060503-17060522 Msa0592020:intron 45.0%
AAACAAACACACGCTTGGAC+TGG + chr4_2:17060546-17060565 None:intergenic 45.0%
!! GCGGTTTGGAGTTAAGCTTT+TGG - chr4_2:17060992-17061011 Msa0592020:three_prime_UTR 45.0%
CGCTTTCAATGTTGTTGGAC+CGG - chr4_2:17061093-17061112 Msa0592020:intron 45.0%
ATAAGCAGCATAGTGCAAGC+AGG + chr4_2:17061564-17061583 None:intergenic 45.0%
CTTCACCTGTTGCAGATTCT+TGG - chr4_2:17061630-17061649 Msa0592020:intron 45.0%
TCTTTCATGGTCCCCATCTA+TGG - chr4_2:17061661-17061680 Msa0592020:intron 45.0%
AAGAGCCCCGTTGTCTAATA+GGG + chr4_2:17061845-17061864 None:intergenic 45.0%
! GCTCTTGTTTGTGCTTCAAC+CGG - chr4_2:17061859-17061878 Msa0592020:intron 45.0%
CGATTATTACCCGTATCCAC+CGG + chr4_2:17061881-17061900 None:intergenic 45.0%
ATATGTAGCGGTGTTCTTCC+AGG + chr4_2:17061988-17062007 None:intergenic 45.0%
TGGAAGAACACCGCTACATA+TGG - chr4_2:17061987-17062006 Msa0592020:intron 45.0%
AAGAACACCGCTACATATGG+CGG - chr4_2:17061990-17062009 Msa0592020:intron 45.0%
GGCTTCAATTAGATTCCTCC+GGG - chr4_2:17062067-17062086 Msa0592020:intron 45.0%
CTGATGAACTTTAGCGGAGA+TGG + chr4_2:17062720-17062739 None:intergenic 45.0%
AGCTCGCTGATGAACTTTAG+CGG + chr4_2:17062726-17062745 None:intergenic 45.0%
! TCAAGAAGCCAAGGCCTTAT+TGG - chr4_2:17062749-17062768 Msa0592020:intron 45.0%
ACGCCTTACTAGAAGCTAAC+AGG - chr4_2:17062775-17062794 Msa0592020:intron 45.0%
CGCCTTACTAGAAGCTAACA+GGG - chr4_2:17062776-17062795 Msa0592020:intron 45.0%
! CTCCCTGTTAGCTTCTAGTA+AGG + chr4_2:17062781-17062800 None:intergenic 45.0%
AGCTAACAGGGAGAGAGAAA+AGG - chr4_2:17062788-17062807 Msa0592020:intron 45.0%
! TCAGAACGTAGTGGAGATGA+AGG + chr4_2:17062837-17062856 None:intergenic 45.0%
TGACCTCAATTGTGCACACT+TGG + chr4_2:17063042-17063061 None:intergenic 45.0%
CCTCGACAAAATGGACAAAC+TGG + chr4_2:17063154-17063173 None:intergenic 45.0%
! CCAGTTTGTCCATTTTGTCG+AGG - chr4_2:17063151-17063170 Msa0592020:intron 45.0%
!!! CCTTCTTGGTTTTGTTGGAC+TGG + chr4_2:17063236-17063255 None:intergenic 45.0%
CCAGTCCAACAAAACCAAGA+AGG - chr4_2:17063233-17063252 Msa0592020:intron 45.0%
!! TTGTCAGCCATTGGCTCATT+CGG - chr4_2:17063301-17063320 Msa0592020:three_prime_UTR 45.0%
GTTGATGCCGAAAAGCAATG+AGG - chr4_2:17063352-17063371 Msa0592020:three_prime_UTR 45.0%
CTTAGTGATCGTTCGGACAA+TGG + chr4_2:17063498-17063517 None:intergenic 45.0%
TCCGGGTTGCAAATGAATCA+TGG + chr4_2:17063828-17063847 None:intergenic 45.0%
GTTGCTTAGATACTCTGCAC+AGG - chr4_2:17063929-17063948 Msa0592020:intron 45.0%
CTCTGCACAGGTTATAACTG+CGG - chr4_2:17063941-17063960 Msa0592020:intron 45.0%
AACTGCGGCTGAGTAATGAT+AGG - chr4_2:17063956-17063975 Msa0592020:intron 45.0%
! TCAATCGAGTTGTGTGGTGG+GGG - chr4_2:17059649-17059668 Msa0592020:three_prime_UTR 50.0%
AACTACCTCGATCCGACCAT+TGG + chr4_2:17059825-17059844 None:intergenic 50.0%
ATATGTATCAGGGTCGCGAC+CGG - chr4_2:17059888-17059907 Msa0592020:three_prime_UTR 50.0%
!! GAAAGTGGCTCTAAGCGGTT+TGG - chr4_2:17060978-17060997 Msa0592020:intron 50.0%
GCTGTGATGCATGGAAAGAC+TGG - chr4_2:17061311-17061330 Msa0592020:intron 50.0%
! GCATGGAAAGACTGGTTGCA+TGG - chr4_2:17061319-17061338 Msa0592020:intron 50.0%
ACCTTGCTGCTCGTCATAGA+CGG - chr4_2:17061803-17061822 Msa0592020:intron 50.0%
CAAGAGCCCCGTTGTCTAAT+AGG + chr4_2:17061846-17061865 None:intergenic 50.0%
CTTGTTTGTGCTTCAACCGG+TGG - chr4_2:17061862-17061881 Msa0592020:intron 50.0%
TGTGCTTCAACCGGTGGATA+CGG - chr4_2:17061868-17061887 Msa0592020:intron 50.0%
AGATGGCCAAACAAGAGGTG+CGG + chr4_2:17062703-17062722 None:intergenic 50.0%
CGAGCTCAATCAAGAAGCCA+AGG - chr4_2:17062740-17062759 Msa0592020:intron 50.0%
! GGCGTTTTCCAATAAGGCCT+TGG + chr4_2:17062760-17062779 None:intergenic 50.0%
CGACCAAGTGTGCACAATTG+AGG - chr4_2:17063036-17063055 Msa0592020:intron 50.0%
CTTGAGGCAGCATAGTGCTA+GGG + chr4_2:17063098-17063117 None:intergenic 50.0%
TCTTGAGGCAGCATAGTGCT+AGG + chr4_2:17063099-17063118 None:intergenic 50.0%
TTGCAGGATCAGGCTTCTTG+AGG + chr4_2:17063114-17063133 None:intergenic 50.0%
AAGAAGCCTGATCCTGCAAC+CGG - chr4_2:17063115-17063134 Msa0592020:intron 50.0%
AAATGGACAAACTGGTCCCG+TGG + chr4_2:17063146-17063165 None:intergenic 50.0%
AGGATGGCACCTCGACAAAA+TGG + chr4_2:17063163-17063182 None:intergenic 50.0%
GATCCTTCCGAATGAGCCAA+TGG + chr4_2:17063311-17063330 None:intergenic 50.0%
AGGATCGCTAGTCGCAATTC+AGG - chr4_2:17063325-17063344 Msa0592020:three_prime_UTR 50.0%
CGCTAGTCGCAATTCAGGAA+AGG - chr4_2:17063330-17063349 Msa0592020:three_prime_UTR 50.0%
ATCAACATACTCACGCGCCA+AGG + chr4_2:17063666-17063685 None:intergenic 50.0%
! GGTGGACACGGTGGTGTTTT+TGG + chr4_2:17059539-17059558 None:intergenic 55.0%
GCACGTGAAGAAGTGGTTGC+CGG + chr4_2:17059591-17059610 None:intergenic 55.0%
GGTCGCGACCCTGATACATA+TGG + chr4_2:17059889-17059908 None:intergenic 55.0%
CCAACCATATGTACCAGGGC+CGG + chr4_2:17059910-17059929 None:intergenic 55.0%
!! GCTTGGACTGGCGGAAATCA+CGG + chr4_2:17060534-17060553 None:intergenic 55.0%
! CAAACACACGCTTGGACTGG+CGG + chr4_2:17060543-17060562 None:intergenic 55.0%
GTGCTTCAACCGGTGGATAC+GGG - chr4_2:17061869-17061888 Msa0592020:intron 55.0%
! GTGGTTCTGTGGACTGTGTC+CGG - chr4_2:17062019-17062038 Msa0592020:intron 55.0%
! TGTCCGGATGCTGCTTGCTT+GGG - chr4_2:17062035-17062054 Msa0592020:intron 55.0%
TGCTTGCTTGGGGAGCAGAT+AGG - chr4_2:17062046-17062065 Msa0592020:intron 55.0%
! ACAAGAGGTGCGGCTGATGA+GGG + chr4_2:17062693-17062712 None:intergenic 55.0%
! AACAAGAGGTGCGGCTGATG+AGG + chr4_2:17062694-17062713 None:intergenic 55.0%
CATCAGCCGCACCTCTTGTT+TGG - chr4_2:17062694-17062713 Msa0592020:intron 55.0%
AGCGGAGATGGCCAAACAAG+AGG + chr4_2:17062708-17062727 None:intergenic 55.0%
!! CAGCCATTGGCTCATTCGGA+AGG - chr4_2:17063305-17063324 Msa0592020:three_prime_UTR 55.0%
GACGCTCGCAGCTTGAATGA+AGG + chr4_2:17063722-17063741 None:intergenic 55.0%
TGCGAGCGTCTGATGACACA+CGG - chr4_2:17063732-17063751 Msa0592020:intron 55.0%
CGTCTGATGACACACGGCAT+GGG - chr4_2:17063738-17063757 Msa0592020:intron 55.0%
AACCTGCCCACCGCGATTTC+GGG + chr4_2:17059426-17059445 None:intergenic 60.0%
GAACCTGCCCACCGCGATTT+CGG + chr4_2:17059427-17059446 None:intergenic 60.0%
TTATACGGCGGTGGACACGG+TGG + chr4_2:17059548-17059567 None:intergenic 60.0%
ACCGTGTCCACCGCCGTATA+AGG - chr4_2:17059547-17059566 Msa0592020:three_prime_UTR 60.0%
GCCTTATACGGCGGTGGACA+CGG + chr4_2:17059551-17059570 None:intergenic 60.0%
GTGTCCACCGCCGTATAAGG+CGG - chr4_2:17059550-17059569 Msa0592020:three_prime_UTR 60.0%
TCCTCACGCGCCGCCTTATA+CGG + chr4_2:17059563-17059582 None:intergenic 60.0%
AGCTGCCAATGGTCGGATCG+AGG - chr4_2:17059817-17059836 Msa0592020:three_prime_UTR 60.0%
CCGGCCCTGGTACATATGGT+TGG - chr4_2:17059907-17059926 Msa0592020:three_prime_UTR 60.0%
TGACGAGCAGCAAGGTGCAG+CGG + chr4_2:17061799-17061818 None:intergenic 60.0%
GCCGTCTATGACGAGCAGCA+AGG + chr4_2:17061807-17061826 None:intergenic 60.0%
CCACGAGCCGCCATATGTAG+CGG + chr4_2:17062000-17062019 None:intergenic 60.0%
CTACATATGGCGGCTCGTGG+TGG - chr4_2:17062000-17062019 Msa0592020:intron 60.0%
! GTGTCCGGATGCTGCTTGCT+TGG - chr4_2:17062034-17062053 Msa0592020:intron 60.0%
! GTCCGGATGCTGCTTGCTTG+GGG - chr4_2:17062036-17062055 Msa0592020:intron 60.0%
CTCCCCAAGCAAGCAGCATC+CGG + chr4_2:17062041-17062060 None:intergenic 60.0%
GGCTGATGAGGGATCGAGCA+GGG + chr4_2:17062682-17062701 None:intergenic 60.0%
GTGCAACCGGTTGCAGGATC+AGG + chr4_2:17063124-17063143 None:intergenic 60.0%
TCCTGCAACCGGTTGCACCA+CGG - chr4_2:17063126-17063145 Msa0592020:intron 60.0%
AACTGGTCCCGTGGTGCAAC+CGG + chr4_2:17063137-17063156 None:intergenic 60.0%
GCGTCTGATGACACACGGCA+TGG - chr4_2:17063737-17063756 Msa0592020:intron 60.0%
CGGTCAGCTGCCCGAAATCG+CGG - chr4_2:17059413-17059432 Msa0592020:three_prime_UTR 65.0%
TCAGCTGCCCGAAATCGCGG+TGG - chr4_2:17059416-17059435 Msa0592020:three_prime_UTR 65.0%
CAGCTGCCCGAAATCGCGGT+GGG - chr4_2:17059417-17059436 Msa0592020:three_prime_UTR 65.0%
TCACGCGCCGCCTTATACGG+CGG + chr4_2:17059560-17059579 None:intergenic 65.0%
GCGGCGCGTGAGGAAGTTTC+CGG - chr4_2:17059569-17059588 Msa0592020:three_prime_UTR 65.0%
GCGACCGGCCCTGGTACATA+TGG - chr4_2:17059903-17059922 Msa0592020:three_prime_UTR 65.0%
CCGCTACATATGGCGGCTCG+TGG - chr4_2:17061997-17062016 Msa0592020:intron 65.0%
CGGCTGATGAGGGATCGAGC+AGG + chr4_2:17062683-17062702 None:intergenic 65.0%
CCTGCAACCGGTTGCACCAC+GGG - chr4_2:17063127-17063146 Msa0592020:intron 65.0%
TGCCCGAAATCGCGGTGGGC+AGG - chr4_2:17059421-17059440 Msa0592020:three_prime_UTR 70.0%
GCCGTATAAGGCGGCGCGTG+AGG - chr4_2:17059559-17059578 Msa0592020:three_prime_UTR 70.0%
AGCAGCAAGGTGCAGCGGCG+TGG + chr4_2:17061794-17061813 None:intergenic 70.0%
! GGCGGCTCGTGGTGGTTCTG+TGG - chr4_2:17062008-17062027 Msa0592020:intron 70.0%
CCCGTGGTGCAACCGGTTGC+AGG + chr4_2:17063130-17063149 None:intergenic 70.0%
CGCGCCGCCTTATACGGCGG+TGG + chr4_2:17059557-17059576 None:intergenic 75.0%
ATCAGGGTCGCGACCGGCCC+TGG - chr4_2:17059894-17059913 Msa0592020:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 17058948 17064130 17058948 ID=Msa0592020;Name=Msa0592020
chr4_2 mRNA 17058948 17064130 17058948 ID=Msa0592020-mRNA-1;Parent=Msa0592020;Name=Msa0592020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.87|0.77|0.88|0.87|0.77|9|2110|75
chr4_2 exon 17058948 17060074 17058948 ID=Msa0592020-mRNA-1:exon:4938;Parent=Msa0592020-mRNA-1
chr4_2 exon 17060188 17060449 17060188 ID=Msa0592020-mRNA-1:exon:4937;Parent=Msa0592020-mRNA-1
chr4_2 exon 17060990 17061097 17060990 ID=Msa0592020-mRNA-1:exon:4936;Parent=Msa0592020-mRNA-1
chr4_2 exon 17061188 17061328 17061188 ID=Msa0592020-mRNA-1:exon:4935;Parent=Msa0592020-mRNA-1
chr4_2 exon 17061427 17061548 17061427 ID=Msa0592020-mRNA-1:exon:4934;Parent=Msa0592020-mRNA-1
chr4_2 exon 17061711 17061782 17061711 ID=Msa0592020-mRNA-1:exon:4933;Parent=Msa0592020-mRNA-1
chr4_2 exon 17061927 17061986 17061927 ID=Msa0592020-mRNA-1:exon:4932;Parent=Msa0592020-mRNA-1
chr4_2 exon 17063240 17063677 17063240 ID=Msa0592020-mRNA-1:exon:4931;Parent=Msa0592020-mRNA-1
chr4_2 exon 17064123 17064130 17064123 ID=Msa0592020-mRNA-1:exon:4930;Parent=Msa0592020-mRNA-1
chr4_2 CDS 17064123 17064130 17064123 ID=Msa0592020-mRNA-1:cds;Parent=Msa0592020-mRNA-1
chr4_2 CDS 17063458 17063677 17063458 ID=Msa0592020-mRNA-1:cds;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17063240 17063457 17063240 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17061927 17061986 17061927 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17061711 17061782 17061711 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17061427 17061548 17061427 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17061188 17061328 17061188 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17060990 17061097 17060990 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17060188 17060449 17060188 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
chr4_2 three_prime_UTR 17058948 17060074 17058948 ID=Msa0592020-mRNA-1:three_prime_utr;Parent=Msa0592020-mRNA-1
Gene Sequence

>Msa0592020

ATGGAGAACAAAAACAACTTCGGTCAGCTGCCCGAAATCGCGGTGGGCAGGTTCAAACTCCAAGACAACATATTCCCATCACCAATCCATCCAATACTTAACTGCTTATTTCCTGACTTCTTCAGTCCAACCAACCCAACTTACCAAAAACACCACCGTGTCCACCGCCGTATAAGGCGGCGCGTGAGGAAGTTTCCGGCAACCACTTCTTCACGTGCTACTTGTTGA

Protein sequence

>Msa0592020

MENKNNFGQLPEIAVGRFKLQDNIFPSPIHPILNCLFPDFFSPTNPTYQKHHRVHRRIRRRVRKFPATTSSRATC*