Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012043.t1 | XP_003629390.1 | 100 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 5.70E-87 | 330.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012043.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 8.6e-84 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012043.t1 | B7FGL2 | 100.0 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 4.1e-87 | 330.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012043.t1 | MTR_8g076830 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.21e-117 | 329 |
| MS.gene012043.t1 | MTR_4g116410 | 97.500 | 160 | 4 | 0 | 1 | 160 | 1 | 160 | 6.73e-115 | 322 |
| MS.gene012043.t1 | MTR_1g017780 | 93.168 | 161 | 10 | 1 | 1 | 160 | 1 | 161 | 2.44e-99 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012043.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 6.64e-98 | 279 |
| MS.gene012043.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 4.99e-96 | 274 |
| MS.gene012043.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 4.19e-94 | 270 |
Find 0 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAAAATAATATCAA+TGG | - | 57561:1131-1150 | MS.gene012043:intergenic | 10.0% |
| !! | ATAAAAAAAAAAACAGAAAT+TGG | - | 57561:1225-1244 | MS.gene012043:intergenic | 10.0% |
| !! | TAAAAAAAAAAACAGAAATT+GGG | - | 57561:1224-1243 | MS.gene012043:intergenic | 10.0% |
| !! | TAAAAAAAAAATGTAGTCTT+TGG | + | 57561:1588-1607 | MS.gene012043:intron | 15.0% |
| !! | TGTTTGTAAATAAATAATAG+TGG | + | 57561:1921-1940 | MS.gene012043:intron | 15.0% |
| !!! | AAAGACTACATTTTTTTTTT+AGG | - | 57561:1589-1608 | MS.gene012043:intergenic | 15.0% |
| !! | TAAAGCAAAATTGAGTTAAA+TGG | + | 57561:1642-1661 | MS.gene012043:intron | 20.0% |
| !! | TAAGTGTGCAAATAAAAAAT+GGG | - | 57561:2671-2690 | MS.gene012043:intergenic | 20.0% |
| !! | TATTTATTTACAAACACAAC+AGG | - | 57561:1917-1936 | MS.gene012043:intergenic | 20.0% |
| !! | TGTCTGTTTATATGATAAAT+TGG | + | 57561:1887-1906 | MS.gene012043:intron | 20.0% |
| !!! | ATTTATGTATGTTTTGATAC+TGG | + | 57561:1764-1783 | MS.gene012043:intron | 20.0% |
| !!! | GAAGGTAATGTTTAATTTTA+GGG | + | 57561:1394-1413 | MS.gene012043:intron | 20.0% |
| !!! | GGCATTTTTTTTTATAAAAC+AGG | + | 57561:2474-2493 | MS.gene012043:intron | 20.0% |
| !!! | TATGTTCTAAACTTACATAT+AGG | + | 57561:1429-1448 | MS.gene012043:intron | 20.0% |
| !!! | TGAAGGTAATGTTTAATTTT+AGG | + | 57561:1393-1412 | MS.gene012043:intron | 20.0% |
| ! | AAACTTACATATAGGAATGT+AGG | + | 57561:1437-1456 | MS.gene012043:intron | 25.0% |
| ! | AAATTAAACATTACCTTCAG+TGG | - | 57561:1392-1411 | MS.gene012043:intergenic | 25.0% |
| ! | AACTAAAACAAATACACTCA+AGG | - | 57561:1481-1500 | MS.gene012043:intergenic | 25.0% |
| ! | AACTTACATATAGGAATGTA+GGG | + | 57561:1438-1457 | MS.gene012043:intron | 25.0% |
| ! | AAGTGTGCAAATAAAAAATG+GGG | - | 57561:2670-2689 | MS.gene012043:intergenic | 25.0% |
| ! | AATTTCACTTTCAAAGTAAC+TGG | - | 57561:2218-2237 | MS.gene012043:intergenic | 25.0% |
| ! | ATTGAATTCCTTTCATACTA+TGG | + | 57561:2643-2662 | MS.gene012043:intron | 25.0% |
| ! | CTAAGTGTGCAAATAAAAAA+TGG | - | 57561:2672-2691 | MS.gene012043:intergenic | 25.0% |
| ! | GTTATGGTTATGTTATGTTA+CGG | + | 57561:2072-2091 | MS.gene012043:intron | 25.0% |
| ! | TTAGATAAGGATAGAAACAT+TGG | + | 57561:1682-1701 | MS.gene012043:intron | 25.0% |
| ! | TTCTATAGAAAGCAAAAGAA+AGG | - | 57561:2849-2868 | MS.gene012043:intergenic | 25.0% |
| !! | GCAATACTTATTCTAGTTAT+TGG | + | 57561:1965-1984 | MS.gene012043:intron | 25.0% |
| !! | GTATTGAGACATGTAATTTT+TGG | + | 57561:2050-2069 | MS.gene012043:intron | 25.0% |
| !!! | ACTTTATTAAGAAGTATCAG+AGG | + | 57561:2619-2638 | MS.gene012043:CDS | 25.0% |
| !!! | AGACATGTAATTTTTGGTTA+TGG | + | 57561:2056-2075 | MS.gene012043:intron | 25.0% |
| !!! | ATTTTAGTCCTCAAATGTAT+TGG | + | 57561:1505-1524 | MS.gene012043:intron | 25.0% |
| !!! | TTCTGTTTCTAATACAGAAA+TGG | + | 57561:2453-2472 | MS.gene012043:intron | 25.0% |
| ACACTTGCAAGACATAATAT+AGG | - | 57561:2145-2164 | MS.gene012043:intergenic | 30.0% | |
| ACAGAGGAGTAACAAAAAAA+GGG | - | 57561:2712-2731 | MS.gene012043:intergenic | 30.0% | |
| ACATACCATAGAAACACTTT+GGG | - | 57561:1189-1208 | MS.gene012043:intergenic | 30.0% | |
| ATGCAAAGCACAATTAGATA+AGG | + | 57561:1669-1688 | MS.gene012043:intron | 30.0% | |
| ATGTTATTATTGGACAATGC+AGG | + | 57561:2804-2823 | MS.gene012043:CDS | 30.0% | |
| TACATACCATAGAAACACTT+TGG | - | 57561:1190-1209 | MS.gene012043:intergenic | 30.0% | |
| TAGAGTAGTTGCACAAATAA+AGG | - | 57561:2926-2945 | MS.gene012043:intergenic | 30.0% | |
| TATAGACCAATTCTTTCAAG+CGG | - | 57561:2101-2120 | MS.gene012043:intergenic | 30.0% | |
| TCCTCAAATGTATTGGATTT+GGG | + | 57561:1512-1531 | MS.gene012043:intron | 30.0% | |
| TGAATAGGACTATTATTGTC+AGG | + | 57561:2583-2602 | MS.gene012043:CDS | 30.0% | |
| TGCATTGTCCAATAATAACA+TGG | - | 57561:2805-2824 | MS.gene012043:intergenic | 30.0% | |
| TTTATTTGTGCAACTACTCT+AGG | + | 57561:2925-2944 | MS.gene012043:intron | 30.0% | |
| ! | ATTGTTAATAGCTCTGTGTA+TGG | + | 57561:2259-2278 | MS.gene012043:intron | 30.0% |
| AAGATACAGAGATAGAACGA+AGG | - | 57561:1100-1119 | MS.gene012042:intergenic | 35.0% | |
| AGTTCGAAGAAATCTGGTAA+GGG | + | 57561:1295-1314 | MS.gene012043:intron | 35.0% | |
| ATAGGACTATTATTGTCAGG+AGG | + | 57561:2586-2605 | MS.gene012043:CDS | 35.0% | |
| CCTCAAATGTATTGGATTTG+GGG | + | 57561:1513-1532 | MS.gene012043:intron | 35.0% | |
| GAAGGAGACCATGTTATTAT+TGG | + | 57561:2794-2813 | MS.gene012043:CDS | 35.0% | |
| GACAGAGGAGTAACAAAAAA+AGG | - | 57561:2713-2732 | MS.gene012043:intergenic | 35.0% | |
| GTCCTCAAATGTATTGGATT+TGG | + | 57561:1511-1530 | MS.gene012043:intron | 35.0% | |
| TCGTTCTATCTCTGTATCTT+TGG | + | 57561:1100-1119 | MS.gene012043:intron | 35.0% | |
| TTCTTTGTTACAGACTGAGA+AGG | + | 57561:1149-1168 | MS.gene012043:intron | 35.0% | |
| ! | AATAGCTCTGTGTATGGTTA+CGG | + | 57561:2265-2284 | MS.gene012043:intron | 35.0% |
| ! | AATCGTTTCTGGAAATCAGT+TGG | + | 57561:1340-1359 | MS.gene012043:CDS | 35.0% |
| ! | TATGTCTTGCAAGTGTTGTT+GGG | + | 57561:2149-2168 | MS.gene012043:intron | 35.0% |
| ! | TGTAGGGATAAACAGCATTT+TGG | + | 57561:1454-1473 | MS.gene012043:intron | 35.0% |
| ! | TTATGTCTTGCAAGTGTTGT+TGG | + | 57561:2148-2167 | MS.gene012043:intron | 35.0% |
| ! | TTTTTGTTACTCCTCTGTCT+AGG | + | 57561:2714-2733 | MS.gene012043:intron | 35.0% |
| !!! | ACGCTATTTCTTTTGCATAG+TGG | + | 57561:1721-1740 | MS.gene012043:intron | 35.0% |
| AATGGGGACCATAGTATGAA+AGG | - | 57561:2654-2673 | MS.gene012043:intergenic | 40.0% | |
| AGATTCCTCTTGGCAATATC+AGG | + | 57561:1822-1841 | MS.gene012043:intron | 40.0% | |
| CAATGCAGGTGAGACTTTAT+AGG | + | 57561:2818-2837 | MS.gene012043:intron | 40.0% | |
| CAGTTCGAAGAAATCTGGTA+AGG | + | 57561:1294-1313 | MS.gene012043:intron | 40.0% | |
| CCCCAAATCCAATACATTTG+AGG | - | 57561:1516-1535 | MS.gene012043:intergenic | 40.0% | |
| GAAAAGGTGGAAATCGTTTC+TGG | + | 57561:1329-1348 | MS.gene012043:CDS | 40.0% | |
| GTTCGAAGAAATCTGGTAAG+GGG | + | 57561:1296-1315 | MS.gene012043:intron | 40.0% | |
| TAATAGAGCCTCACATTCGA+GGG | + | 57561:1547-1566 | MS.gene012043:intron | 40.0% | |
| TCCTATTCATCTTAGCACTG+TGG | - | 57561:2572-2591 | MS.gene012043:intergenic | 40.0% | |
| TGGACACTTCTTGTCAATGT+AGG | - | 57561:2502-2521 | MS.gene012043:intergenic | 40.0% | |
| TGTTGCAGTTCGAAGAAATC+TGG | + | 57561:1289-1308 | MS.gene012043:intron | 40.0% | |
| ! | AAACGATTTCCACCTTTTCC+AGG | - | 57561:1328-1347 | MS.gene012043:intergenic | 40.0% |
| ! | AGCAACCCAAAGTGTTTCTA+TGG | + | 57561:1181-1200 | MS.gene012043:CDS | 40.0% |
| ! | TGTTTGTCTGAGATTCCTCT+TGG | + | 57561:1812-1831 | MS.gene012043:intron | 40.0% |
| ! | TTCTGGAAATCAGTTGGTCT+TGG | + | 57561:1346-1365 | MS.gene012043:CDS | 40.0% |
| AGAAATCTGGTAAGGGGAAG+AGG | + | 57561:1302-1321 | MS.gene012043:CDS | 45.0% | |
| ATCACCTTGCTTCCGTGTTA+AGG | + | 57561:2772-2791 | MS.gene012043:CDS | 45.0% | |
| ATCTAGTGGTGCAGGAAAGA+AGG | + | 57561:3001-3020 | MS.gene012043:CDS | 45.0% | |
| ATGGAAACATTGCCGGTGAA+TGG | - | 57561:2522-2541 | MS.gene012043:intergenic | 45.0% | |
| ATTACCTTCAGTGGCTTCTC+TGG | - | 57561:1383-1402 | MS.gene012043:intergenic | 45.0% | |
| CATGGTCTCCTTCCTTAACA+CGG | - | 57561:2787-2806 | MS.gene012043:intergenic | 45.0% | |
| CGGTATCCGCTTGAAAGAAT+TGG | + | 57561:2092-2111 | MS.gene012043:intron | 45.0% | |
| CTCTGTCTAGGTATGAGAAG+AGG | + | 57561:2726-2745 | MS.gene012043:intron | 45.0% | |
| CTCTTCTCATACCTAGACAG+AGG | - | 57561:2728-2747 | MS.gene012043:intergenic | 45.0% | |
| GCCACAGTGCTAAGATGAAT+AGG | + | 57561:2568-2587 | MS.gene012043:CDS | 45.0% | |
| GTAATAGAGCCTCACATTCG+AGG | + | 57561:1546-1565 | MS.gene012043:intron | 45.0% | |
| TTACCTTCAGTGGCTTCTCT+GGG | - | 57561:1382-1401 | MS.gene012043:intergenic | 45.0% | |
| TTCCTCTTGGCAATATCAGG+TGG | + | 57561:1825-1844 | MS.gene012043:intron | 45.0% | |
| ! | GCAGGAAAGAAGGCTTTTAC+TGG | + | 57561:3011-3030 | MS.gene012043:CDS | 45.0% |
| ! | TCTTGCAAGTGTTGTTGGGA+AGG | + | 57561:2153-2172 | MS.gene012043:intron | 45.0% |
| !! | CTGAGCGTCTAGCTTTGTAT+TGG | + | 57561:1787-1806 | MS.gene012043:intron | 45.0% |
| !! | GACAAGAAGTGTCCATTCAC+CGG | + | 57561:2507-2526 | MS.gene012043:CDS | 45.0% |
| AACCTCACAGTCTTGGAGAG+TGG | - | 57561:2951-2970 | MS.gene012042:intergenic | 50.0% | |
| AAGCAAGGTGATACGTGAGC+GGG | - | 57561:2764-2783 | MS.gene012042:intergenic | 50.0% | |
| AGCCACCTGATATTGCCAAG+AGG | - | 57561:1830-1849 | MS.gene012043:intergenic | 50.0% | |
| ATCCCAGCTGGATCATCTAG+TGG | + | 57561:2987-3006 | MS.gene012043:CDS | 50.0% | |
| CACCACTAGATGATCCAGCT+GGG | - | 57561:2992-3011 | MS.gene012043:intergenic | 50.0% | |
| CACGTTGAACCTCACAGTCT+TGG | - | 57561:2958-2977 | MS.gene012043:intergenic | 50.0% | |
| CCTTCCTTAACACGGAAGCA+AGG | - | 57561:2779-2798 | MS.gene012043:intergenic | 50.0% | |
| CCTTGCTTCCGTGTTAAGGA+AGG | + | 57561:2776-2795 | MS.gene012043:CDS | 50.0% | |
| CTTAGCACTGTGGCAAGTTC+CGG | - | 57561:2562-2581 | MS.gene012043:intergenic | 50.0% | |
| GAAGCAAGGTGATACGTGAG+CGG | - | 57561:2765-2784 | MS.gene012043:intergenic | 50.0% | |
| GTGTTGAAAGTGATCCCAGC+TGG | + | 57561:2975-2994 | MS.gene012043:CDS | 50.0% | |
| GTTATGCTCCCTCGAATGTG+AGG | - | 57561:1558-1577 | MS.gene012043:intergenic | 50.0% | |
| TACCTTCAGTGGCTTCTCTG+GGG | - | 57561:1381-1400 | MS.gene012043:intergenic | 50.0% | |
| TCACCGGCAATGTTTCCATC+CGG | + | 57561:2523-2542 | MS.gene012043:CDS | 50.0% | |
| AAGGGGAAGAGGCCTGGAAA+AGG | + | 57561:1313-1332 | MS.gene012043:CDS | 55.0% | |
| ACCCCGGATGGAAACATTGC+CGG | - | 57561:2529-2548 | MS.gene012043:intergenic | 55.0% | |
| ACCGGCAATGTTTCCATCCG+GGG | + | 57561:2525-2544 | MS.gene012043:CDS | 55.0% | |
| ACCTTCAGTGGCTTCTCTGG+GGG | - | 57561:1380-1399 | MS.gene012043:intergenic | 55.0% | |
| ATCCGGGGTCGTATCTTAGC+CGG | + | 57561:2540-2559 | MS.gene012043:CDS | 55.0% | |
| CACCGGCAATGTTTCCATCC+GGG | + | 57561:2524-2543 | MS.gene012043:CDS | 55.0% | |
| GCACCACTAGATGATCCAGC+TGG | - | 57561:2993-3012 | MS.gene012043:intergenic | 55.0% | |
| GCTGGATCATCTAGTGGTGC+AGG | + | 57561:2993-3012 | MS.gene012043:CDS | 55.0% | |
| TTCCGGCTAAGATACGACCC+CGG | - | 57561:2545-2564 | MS.gene012043:intergenic | 55.0% | |
| ACCCCCAGAGAAGCCACTGA+AGG | + | 57561:1376-1395 | MS.gene012043:CDS | 60.0% | |
| GGCCACTCTCCAAGACTGTG+AGG | + | 57561:2946-2965 | MS.gene012043:intron | 60.0% | |
| GGCTAAGATACGACCCCGGA+TGG | - | 57561:2541-2560 | MS.gene012043:intergenic | 60.0% | |
| GGGAAGAGGCCTGGAAAAGG+TGG | + | 57561:1316-1335 | MS.gene012043:CDS | 60.0% | |
| TCTGGTAAGGGGAAGAGGCC+TGG | + | 57561:1307-1326 | MS.gene012043:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57561 | gene | 1065 | 3040 | 1065 | ID=MS.gene012043 |
| 57561 | mRNA | 1065 | 3040 | 1065 | ID=MS.gene012043.t1;Parent=MS.gene012043 |
| 57561 | exon | 1065 | 1076 | 1065 | ID=MS.gene012043.t1.exon1;Parent=MS.gene012043.t1 |
| 57561 | CDS | 1065 | 1076 | 1065 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| 57561 | exon | 1162 | 1202 | 1162 | ID=MS.gene012043.t1.exon2;Parent=MS.gene012043.t1 |
| 57561 | CDS | 1162 | 1202 | 1162 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| 57561 | exon | 1297 | 1397 | 1297 | ID=MS.gene012043.t1.exon3;Parent=MS.gene012043.t1 |
| 57561 | CDS | 1297 | 1397 | 1297 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| 57561 | exon | 2496 | 2640 | 2496 | ID=MS.gene012043.t1.exon4;Parent=MS.gene012043.t1 |
| 57561 | CDS | 2496 | 2640 | 2496 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| 57561 | exon | 2736 | 2825 | 2736 | ID=MS.gene012043.t1.exon5;Parent=MS.gene012043.t1 |
| 57561 | CDS | 2736 | 2825 | 2736 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| 57561 | exon | 2947 | 3040 | 2947 | ID=MS.gene012043.t1.exon6;Parent=MS.gene012043.t1 |
| 57561 | CDS | 2947 | 3040 | 2947 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
| Gene Sequence |
| Protein sequence |