Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012043.t1 | XP_003629390.1 | 100 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 5.70E-87 | 330.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012043.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 8.6e-84 | 310.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012043.t1 | B7FGL2 | 100.0 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 4.1e-87 | 330.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012043.t1 | MTR_8g076830 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.21e-117 | 329 |
MS.gene012043.t1 | MTR_4g116410 | 97.500 | 160 | 4 | 0 | 1 | 160 | 1 | 160 | 6.73e-115 | 322 |
MS.gene012043.t1 | MTR_1g017780 | 93.168 | 161 | 10 | 1 | 1 | 160 | 1 | 161 | 2.44e-99 | 283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012043.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 6.64e-98 | 279 |
MS.gene012043.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 4.99e-96 | 274 |
MS.gene012043.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 4.19e-94 | 270 |
Find 0 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGAAAAATAATATCAA+TGG | - | 57561:1131-1150 | MS.gene012043:intergenic | 10.0% |
!! | ATAAAAAAAAAAACAGAAAT+TGG | - | 57561:1225-1244 | MS.gene012043:intergenic | 10.0% |
!! | TAAAAAAAAAAACAGAAATT+GGG | - | 57561:1224-1243 | MS.gene012043:intergenic | 10.0% |
!! | TAAAAAAAAAATGTAGTCTT+TGG | + | 57561:1588-1607 | MS.gene012043:intron | 15.0% |
!! | TGTTTGTAAATAAATAATAG+TGG | + | 57561:1921-1940 | MS.gene012043:intron | 15.0% |
!!! | AAAGACTACATTTTTTTTTT+AGG | - | 57561:1589-1608 | MS.gene012043:intergenic | 15.0% |
!! | TAAAGCAAAATTGAGTTAAA+TGG | + | 57561:1642-1661 | MS.gene012043:intron | 20.0% |
!! | TAAGTGTGCAAATAAAAAAT+GGG | - | 57561:2671-2690 | MS.gene012043:intergenic | 20.0% |
!! | TATTTATTTACAAACACAAC+AGG | - | 57561:1917-1936 | MS.gene012043:intergenic | 20.0% |
!! | TGTCTGTTTATATGATAAAT+TGG | + | 57561:1887-1906 | MS.gene012043:intron | 20.0% |
!!! | ATTTATGTATGTTTTGATAC+TGG | + | 57561:1764-1783 | MS.gene012043:intron | 20.0% |
!!! | GAAGGTAATGTTTAATTTTA+GGG | + | 57561:1394-1413 | MS.gene012043:intron | 20.0% |
!!! | GGCATTTTTTTTTATAAAAC+AGG | + | 57561:2474-2493 | MS.gene012043:intron | 20.0% |
!!! | TATGTTCTAAACTTACATAT+AGG | + | 57561:1429-1448 | MS.gene012043:intron | 20.0% |
!!! | TGAAGGTAATGTTTAATTTT+AGG | + | 57561:1393-1412 | MS.gene012043:intron | 20.0% |
! | AAACTTACATATAGGAATGT+AGG | + | 57561:1437-1456 | MS.gene012043:intron | 25.0% |
! | AAATTAAACATTACCTTCAG+TGG | - | 57561:1392-1411 | MS.gene012043:intergenic | 25.0% |
! | AACTAAAACAAATACACTCA+AGG | - | 57561:1481-1500 | MS.gene012043:intergenic | 25.0% |
! | AACTTACATATAGGAATGTA+GGG | + | 57561:1438-1457 | MS.gene012043:intron | 25.0% |
! | AAGTGTGCAAATAAAAAATG+GGG | - | 57561:2670-2689 | MS.gene012043:intergenic | 25.0% |
! | AATTTCACTTTCAAAGTAAC+TGG | - | 57561:2218-2237 | MS.gene012043:intergenic | 25.0% |
! | ATTGAATTCCTTTCATACTA+TGG | + | 57561:2643-2662 | MS.gene012043:intron | 25.0% |
! | CTAAGTGTGCAAATAAAAAA+TGG | - | 57561:2672-2691 | MS.gene012043:intergenic | 25.0% |
! | GTTATGGTTATGTTATGTTA+CGG | + | 57561:2072-2091 | MS.gene012043:intron | 25.0% |
! | TTAGATAAGGATAGAAACAT+TGG | + | 57561:1682-1701 | MS.gene012043:intron | 25.0% |
! | TTCTATAGAAAGCAAAAGAA+AGG | - | 57561:2849-2868 | MS.gene012043:intergenic | 25.0% |
!! | GCAATACTTATTCTAGTTAT+TGG | + | 57561:1965-1984 | MS.gene012043:intron | 25.0% |
!! | GTATTGAGACATGTAATTTT+TGG | + | 57561:2050-2069 | MS.gene012043:intron | 25.0% |
!!! | ACTTTATTAAGAAGTATCAG+AGG | + | 57561:2619-2638 | MS.gene012043:CDS | 25.0% |
!!! | AGACATGTAATTTTTGGTTA+TGG | + | 57561:2056-2075 | MS.gene012043:intron | 25.0% |
!!! | ATTTTAGTCCTCAAATGTAT+TGG | + | 57561:1505-1524 | MS.gene012043:intron | 25.0% |
!!! | TTCTGTTTCTAATACAGAAA+TGG | + | 57561:2453-2472 | MS.gene012043:intron | 25.0% |
ACACTTGCAAGACATAATAT+AGG | - | 57561:2145-2164 | MS.gene012043:intergenic | 30.0% | |
ACAGAGGAGTAACAAAAAAA+GGG | - | 57561:2712-2731 | MS.gene012043:intergenic | 30.0% | |
ACATACCATAGAAACACTTT+GGG | - | 57561:1189-1208 | MS.gene012043:intergenic | 30.0% | |
ATGCAAAGCACAATTAGATA+AGG | + | 57561:1669-1688 | MS.gene012043:intron | 30.0% | |
ATGTTATTATTGGACAATGC+AGG | + | 57561:2804-2823 | MS.gene012043:CDS | 30.0% | |
TACATACCATAGAAACACTT+TGG | - | 57561:1190-1209 | MS.gene012043:intergenic | 30.0% | |
TAGAGTAGTTGCACAAATAA+AGG | - | 57561:2926-2945 | MS.gene012043:intergenic | 30.0% | |
TATAGACCAATTCTTTCAAG+CGG | - | 57561:2101-2120 | MS.gene012043:intergenic | 30.0% | |
TCCTCAAATGTATTGGATTT+GGG | + | 57561:1512-1531 | MS.gene012043:intron | 30.0% | |
TGAATAGGACTATTATTGTC+AGG | + | 57561:2583-2602 | MS.gene012043:CDS | 30.0% | |
TGCATTGTCCAATAATAACA+TGG | - | 57561:2805-2824 | MS.gene012043:intergenic | 30.0% | |
TTTATTTGTGCAACTACTCT+AGG | + | 57561:2925-2944 | MS.gene012043:intron | 30.0% | |
! | ATTGTTAATAGCTCTGTGTA+TGG | + | 57561:2259-2278 | MS.gene012043:intron | 30.0% |
AAGATACAGAGATAGAACGA+AGG | - | 57561:1100-1119 | MS.gene012042:intergenic | 35.0% | |
AGTTCGAAGAAATCTGGTAA+GGG | + | 57561:1295-1314 | MS.gene012043:intron | 35.0% | |
ATAGGACTATTATTGTCAGG+AGG | + | 57561:2586-2605 | MS.gene012043:CDS | 35.0% | |
CCTCAAATGTATTGGATTTG+GGG | + | 57561:1513-1532 | MS.gene012043:intron | 35.0% | |
GAAGGAGACCATGTTATTAT+TGG | + | 57561:2794-2813 | MS.gene012043:CDS | 35.0% | |
GACAGAGGAGTAACAAAAAA+AGG | - | 57561:2713-2732 | MS.gene012043:intergenic | 35.0% | |
GTCCTCAAATGTATTGGATT+TGG | + | 57561:1511-1530 | MS.gene012043:intron | 35.0% | |
TCGTTCTATCTCTGTATCTT+TGG | + | 57561:1100-1119 | MS.gene012043:intron | 35.0% | |
TTCTTTGTTACAGACTGAGA+AGG | + | 57561:1149-1168 | MS.gene012043:intron | 35.0% | |
! | AATAGCTCTGTGTATGGTTA+CGG | + | 57561:2265-2284 | MS.gene012043:intron | 35.0% |
! | AATCGTTTCTGGAAATCAGT+TGG | + | 57561:1340-1359 | MS.gene012043:CDS | 35.0% |
! | TATGTCTTGCAAGTGTTGTT+GGG | + | 57561:2149-2168 | MS.gene012043:intron | 35.0% |
! | TGTAGGGATAAACAGCATTT+TGG | + | 57561:1454-1473 | MS.gene012043:intron | 35.0% |
! | TTATGTCTTGCAAGTGTTGT+TGG | + | 57561:2148-2167 | MS.gene012043:intron | 35.0% |
! | TTTTTGTTACTCCTCTGTCT+AGG | + | 57561:2714-2733 | MS.gene012043:intron | 35.0% |
!!! | ACGCTATTTCTTTTGCATAG+TGG | + | 57561:1721-1740 | MS.gene012043:intron | 35.0% |
AATGGGGACCATAGTATGAA+AGG | - | 57561:2654-2673 | MS.gene012043:intergenic | 40.0% | |
AGATTCCTCTTGGCAATATC+AGG | + | 57561:1822-1841 | MS.gene012043:intron | 40.0% | |
CAATGCAGGTGAGACTTTAT+AGG | + | 57561:2818-2837 | MS.gene012043:intron | 40.0% | |
CAGTTCGAAGAAATCTGGTA+AGG | + | 57561:1294-1313 | MS.gene012043:intron | 40.0% | |
CCCCAAATCCAATACATTTG+AGG | - | 57561:1516-1535 | MS.gene012043:intergenic | 40.0% | |
GAAAAGGTGGAAATCGTTTC+TGG | + | 57561:1329-1348 | MS.gene012043:CDS | 40.0% | |
GTTCGAAGAAATCTGGTAAG+GGG | + | 57561:1296-1315 | MS.gene012043:intron | 40.0% | |
TAATAGAGCCTCACATTCGA+GGG | + | 57561:1547-1566 | MS.gene012043:intron | 40.0% | |
TCCTATTCATCTTAGCACTG+TGG | - | 57561:2572-2591 | MS.gene012043:intergenic | 40.0% | |
TGGACACTTCTTGTCAATGT+AGG | - | 57561:2502-2521 | MS.gene012043:intergenic | 40.0% | |
TGTTGCAGTTCGAAGAAATC+TGG | + | 57561:1289-1308 | MS.gene012043:intron | 40.0% | |
! | AAACGATTTCCACCTTTTCC+AGG | - | 57561:1328-1347 | MS.gene012043:intergenic | 40.0% |
! | AGCAACCCAAAGTGTTTCTA+TGG | + | 57561:1181-1200 | MS.gene012043:CDS | 40.0% |
! | TGTTTGTCTGAGATTCCTCT+TGG | + | 57561:1812-1831 | MS.gene012043:intron | 40.0% |
! | TTCTGGAAATCAGTTGGTCT+TGG | + | 57561:1346-1365 | MS.gene012043:CDS | 40.0% |
AGAAATCTGGTAAGGGGAAG+AGG | + | 57561:1302-1321 | MS.gene012043:CDS | 45.0% | |
ATCACCTTGCTTCCGTGTTA+AGG | + | 57561:2772-2791 | MS.gene012043:CDS | 45.0% | |
ATCTAGTGGTGCAGGAAAGA+AGG | + | 57561:3001-3020 | MS.gene012043:CDS | 45.0% | |
ATGGAAACATTGCCGGTGAA+TGG | - | 57561:2522-2541 | MS.gene012043:intergenic | 45.0% | |
ATTACCTTCAGTGGCTTCTC+TGG | - | 57561:1383-1402 | MS.gene012043:intergenic | 45.0% | |
CATGGTCTCCTTCCTTAACA+CGG | - | 57561:2787-2806 | MS.gene012043:intergenic | 45.0% | |
CGGTATCCGCTTGAAAGAAT+TGG | + | 57561:2092-2111 | MS.gene012043:intron | 45.0% | |
CTCTGTCTAGGTATGAGAAG+AGG | + | 57561:2726-2745 | MS.gene012043:intron | 45.0% | |
CTCTTCTCATACCTAGACAG+AGG | - | 57561:2728-2747 | MS.gene012043:intergenic | 45.0% | |
GCCACAGTGCTAAGATGAAT+AGG | + | 57561:2568-2587 | MS.gene012043:CDS | 45.0% | |
GTAATAGAGCCTCACATTCG+AGG | + | 57561:1546-1565 | MS.gene012043:intron | 45.0% | |
TTACCTTCAGTGGCTTCTCT+GGG | - | 57561:1382-1401 | MS.gene012043:intergenic | 45.0% | |
TTCCTCTTGGCAATATCAGG+TGG | + | 57561:1825-1844 | MS.gene012043:intron | 45.0% | |
! | GCAGGAAAGAAGGCTTTTAC+TGG | + | 57561:3011-3030 | MS.gene012043:CDS | 45.0% |
! | TCTTGCAAGTGTTGTTGGGA+AGG | + | 57561:2153-2172 | MS.gene012043:intron | 45.0% |
!! | CTGAGCGTCTAGCTTTGTAT+TGG | + | 57561:1787-1806 | MS.gene012043:intron | 45.0% |
!! | GACAAGAAGTGTCCATTCAC+CGG | + | 57561:2507-2526 | MS.gene012043:CDS | 45.0% |
AACCTCACAGTCTTGGAGAG+TGG | - | 57561:2951-2970 | MS.gene012042:intergenic | 50.0% | |
AAGCAAGGTGATACGTGAGC+GGG | - | 57561:2764-2783 | MS.gene012042:intergenic | 50.0% | |
AGCCACCTGATATTGCCAAG+AGG | - | 57561:1830-1849 | MS.gene012043:intergenic | 50.0% | |
ATCCCAGCTGGATCATCTAG+TGG | + | 57561:2987-3006 | MS.gene012043:CDS | 50.0% | |
CACCACTAGATGATCCAGCT+GGG | - | 57561:2992-3011 | MS.gene012043:intergenic | 50.0% | |
CACGTTGAACCTCACAGTCT+TGG | - | 57561:2958-2977 | MS.gene012043:intergenic | 50.0% | |
CCTTCCTTAACACGGAAGCA+AGG | - | 57561:2779-2798 | MS.gene012043:intergenic | 50.0% | |
CCTTGCTTCCGTGTTAAGGA+AGG | + | 57561:2776-2795 | MS.gene012043:CDS | 50.0% | |
CTTAGCACTGTGGCAAGTTC+CGG | - | 57561:2562-2581 | MS.gene012043:intergenic | 50.0% | |
GAAGCAAGGTGATACGTGAG+CGG | - | 57561:2765-2784 | MS.gene012043:intergenic | 50.0% | |
GTGTTGAAAGTGATCCCAGC+TGG | + | 57561:2975-2994 | MS.gene012043:CDS | 50.0% | |
GTTATGCTCCCTCGAATGTG+AGG | - | 57561:1558-1577 | MS.gene012043:intergenic | 50.0% | |
TACCTTCAGTGGCTTCTCTG+GGG | - | 57561:1381-1400 | MS.gene012043:intergenic | 50.0% | |
TCACCGGCAATGTTTCCATC+CGG | + | 57561:2523-2542 | MS.gene012043:CDS | 50.0% | |
AAGGGGAAGAGGCCTGGAAA+AGG | + | 57561:1313-1332 | MS.gene012043:CDS | 55.0% | |
ACCCCGGATGGAAACATTGC+CGG | - | 57561:2529-2548 | MS.gene012043:intergenic | 55.0% | |
ACCGGCAATGTTTCCATCCG+GGG | + | 57561:2525-2544 | MS.gene012043:CDS | 55.0% | |
ACCTTCAGTGGCTTCTCTGG+GGG | - | 57561:1380-1399 | MS.gene012043:intergenic | 55.0% | |
ATCCGGGGTCGTATCTTAGC+CGG | + | 57561:2540-2559 | MS.gene012043:CDS | 55.0% | |
CACCGGCAATGTTTCCATCC+GGG | + | 57561:2524-2543 | MS.gene012043:CDS | 55.0% | |
GCACCACTAGATGATCCAGC+TGG | - | 57561:2993-3012 | MS.gene012043:intergenic | 55.0% | |
GCTGGATCATCTAGTGGTGC+AGG | + | 57561:2993-3012 | MS.gene012043:CDS | 55.0% | |
TTCCGGCTAAGATACGACCC+CGG | - | 57561:2545-2564 | MS.gene012043:intergenic | 55.0% | |
ACCCCCAGAGAAGCCACTGA+AGG | + | 57561:1376-1395 | MS.gene012043:CDS | 60.0% | |
GGCCACTCTCCAAGACTGTG+AGG | + | 57561:2946-2965 | MS.gene012043:intron | 60.0% | |
GGCTAAGATACGACCCCGGA+TGG | - | 57561:2541-2560 | MS.gene012043:intergenic | 60.0% | |
GGGAAGAGGCCTGGAAAAGG+TGG | + | 57561:1316-1335 | MS.gene012043:CDS | 60.0% | |
TCTGGTAAGGGGAAGAGGCC+TGG | + | 57561:1307-1326 | MS.gene012043:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
57561 | gene | 1065 | 3040 | 1065 | ID=MS.gene012043 |
57561 | mRNA | 1065 | 3040 | 1065 | ID=MS.gene012043.t1;Parent=MS.gene012043 |
57561 | exon | 1065 | 1076 | 1065 | ID=MS.gene012043.t1.exon1;Parent=MS.gene012043.t1 |
57561 | CDS | 1065 | 1076 | 1065 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
57561 | exon | 1162 | 1202 | 1162 | ID=MS.gene012043.t1.exon2;Parent=MS.gene012043.t1 |
57561 | CDS | 1162 | 1202 | 1162 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
57561 | exon | 1297 | 1397 | 1297 | ID=MS.gene012043.t1.exon3;Parent=MS.gene012043.t1 |
57561 | CDS | 1297 | 1397 | 1297 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
57561 | exon | 2496 | 2640 | 2496 | ID=MS.gene012043.t1.exon4;Parent=MS.gene012043.t1 |
57561 | CDS | 2496 | 2640 | 2496 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
57561 | exon | 2736 | 2825 | 2736 | ID=MS.gene012043.t1.exon5;Parent=MS.gene012043.t1 |
57561 | CDS | 2736 | 2825 | 2736 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
57561 | exon | 2947 | 3040 | 2947 | ID=MS.gene012043.t1.exon6;Parent=MS.gene012043.t1 |
57561 | CDS | 2947 | 3040 | 2947 | ID=cds.MS.gene012043.t1;Parent=MS.gene012043.t1 |
Gene Sequence |
Protein sequence |