Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76443.t1 | XP_003629390.1 | 100 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 5.70E-87 | 330.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76443.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 8.6e-84 | 310.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76443.t1 | B7FGL2 | 100.0 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 4.1e-87 | 330.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76443.t1 | MTR_8g076830 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.21e-117 | 329 |
MS.gene76443.t1 | MTR_4g116410 | 97.500 | 160 | 4 | 0 | 1 | 160 | 1 | 160 | 6.73e-115 | 322 |
MS.gene76443.t1 | MTR_1g017780 | 93.168 | 161 | 10 | 1 | 1 | 160 | 1 | 161 | 2.44e-99 | 283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76443.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 6.64e-98 | 279 |
MS.gene76443.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 4.99e-96 | 274 |
MS.gene76443.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 4.19e-94 | 270 |
Find 56 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAAGGTGGAAATCGTTTC+TGG | 0.234016 | 8.1:+30875737 | MS.gene76443:CDS |
GAAGGAGACCATGTTATTAT+TGG | 0.252368 | 8.1:+30877047 | MS.gene76443:CDS |
ATTACCTTCAGTGGCTTCTC+TGG | 0.315196 | 8.1:-30875788 | None:intergenic |
AGCAACCCAAAGTGTTTCTA+TGG | 0.356385 | 8.1:+30875590 | MS.gene76443:CDS |
TTCTGGAAATCAGTTGGTCT+TGG | 0.364644 | 8.1:+30875754 | MS.gene76443:CDS |
CTTAGCACTGTGGCAAGTTC+CGG | 0.365733 | 8.1:-30876812 | None:intergenic |
ATCACCTTGTTTCCGTGTTA+AGG | 0.372878 | 8.1:+30877025 | MS.gene76443:CDS |
TGTTGCAGTTCGAAGAAATC+TGG | 0.406931 | 8.1:+30875697 | MS.gene76443:intron |
TTACCTTCAGTGGCTTCTCT+GGG | 0.418959 | 8.1:-30875787 | None:intergenic |
TACATACCATAGAAACACTT+TGG | 0.429678 | 8.1:-30875596 | None:intergenic |
ACCCCGGATGGAAACATTGC+CGG | 0.435918 | 8.1:-30876779 | None:intergenic |
ATGGAAACATTGCCGGTGAA+TGG | 0.446336 | 8.1:-30876772 | None:intergenic |
TCACCGGCAATGTTTCCATC+CGG | 0.450663 | 8.1:+30876776 | MS.gene76443:CDS |
GCCACAGTGCTAAGATGAAT+AGG | 0.451415 | 8.1:+30876821 | MS.gene76443:CDS |
CACCGGCAATGTTTCCATCC+GGG | 0.463421 | 8.1:+30876777 | MS.gene76443:CDS |
CACGTTGAACCTCACAGTCT+TGG | 0.472737 | 8.1:-30877208 | None:intergenic |
TGGACACTTCTTGTCAATGT+AGG | 0.485606 | 8.1:-30876752 | None:intergenic |
ACATACCATAGAAACACTTT+GGG | 0.486474 | 8.1:-30875595 | None:intergenic |
CAGTTCGAAGAAATCTGGTA+AGG | 0.491165 | 8.1:+30875702 | MS.gene76443:intron |
GGCTAAGATACGACCCCGGA+TGG | 0.500286 | 8.1:-30876791 | None:intergenic |
GCTGGATCATCTAGTGGTGC+AGG | 0.501738 | 8.1:+30877246 | MS.gene76443:CDS |
TGAATAGGACTATTATTGTC+AGG | 0.502457 | 8.1:+30876836 | MS.gene76443:CDS |
ATCTAGTGGTGCAGGAAAGA+AGG | 0.504250 | 8.1:+30877254 | MS.gene76443:CDS |
AAATTAAACATTACCTTCAG+TGG | 0.506426 | 8.1:-30875797 | None:intergenic |
TCTGGTAAGGGGAAGAGGCC+AGG | 0.508129 | 8.1:+30875715 | MS.gene76443:CDS |
AGAAATCTGGTAAGGGGAAG+AGG | 0.511084 | 8.1:+30875710 | MS.gene76443:CDS |
TTCTTTGTTGCAGACGGAGA+AGG | 0.512163 | 8.1:+30875558 | MS.gene76443:intron |
AAGGGGAAGAGGCCAGGAAA+AGG | 0.518491 | 8.1:+30875721 | MS.gene76443:CDS |
ACCTTCAGTGGCTTCTCTGG+GGG | 0.522306 | 8.1:-30875785 | None:intergenic |
CCTTGTTTCCGTGTTAAGGA+AGG | 0.530589 | 8.1:+30877029 | MS.gene76443:CDS |
ATGTTATTATTGGACAATGC+AGG | 0.531107 | 8.1:+30877057 | MS.gene76443:CDS |
ACCGGCAATGTTTCCATCCG+GGG | 0.533333 | 8.1:+30876778 | MS.gene76443:CDS |
GACAAGAAGTGTCCATTCAC+CGG | 0.534170 | 8.1:+30876760 | MS.gene76443:CDS |
GCACCACTAGATGATCCAGC+TGG | 0.537223 | 8.1:-30877243 | None:intergenic |
ATCCGGGGTCGTATCTTAGC+CGG | 0.548552 | 8.1:+30876793 | MS.gene76443:CDS |
TACCTTCAGTGGCTTCTCTG+GGG | 0.550510 | 8.1:-30875786 | None:intergenic |
GGGAAGAGGCCAGGAAAAGG+TGG | 0.558384 | 8.1:+30875724 | MS.gene76443:CDS |
AATCGTTTCTGGAAATCAGT+TGG | 0.558681 | 8.1:+30875748 | MS.gene76443:CDS |
GTGTTGAAAGTGATCCCAGC+TGG | 0.566524 | 8.1:+30877228 | MS.gene76443:CDS |
GTAAGTTACTTGTTCAGCCA+TGG | 0.581521 | 8.1:-30875473 | None:intergenic |
AGTTCGAAGAAATCTGGTAA+GGG | 0.591421 | 8.1:+30875703 | MS.gene76443:intron |
AACCTCACAGTCTTGGAGAG+TGG | 0.595732 | 8.1:-30877201 | None:intergenic |
CCTTCCTTAACACGGAAACA+AGG | 0.609589 | 8.1:-30877029 | None:intergenic |
AAACAAGGTGATACGTGAGC+GGG | 0.610175 | 8.1:-30877014 | None:intergenic |
CATGGTCTCCTTCCTTAACA+CGG | 0.613855 | 8.1:-30877037 | None:intergenic |
CTCTGTCTAGGTATGAGAAG+AGG | 0.621567 | 8.1:+30876979 | MS.gene76443:intron |
ACTTTATTAAGAAGTATCAG+AGG | 0.622717 | 8.1:+30876872 | MS.gene76443:CDS |
CACCACTAGATGATCCAGCT+GGG | 0.624692 | 8.1:-30877242 | None:intergenic |
GTTCGAAGAAATCTGGTAAG+GGG | 0.639946 | 8.1:+30875704 | MS.gene76443:intron |
ATCCCAGCTGGATCATCTAG+TGG | 0.646748 | 8.1:+30877240 | MS.gene76443:CDS |
TGCATTGTCCAATAATAACA+TGG | 0.654130 | 8.1:-30877055 | None:intergenic |
GGCCACTCTCCAAGACTGTG+AGG | 0.675363 | 8.1:+30877199 | MS.gene76443:intron |
GAAACAAGGTGATACGTGAG+CGG | 0.691646 | 8.1:-30877015 | None:intergenic |
ATAGGACTATTATTGTCAGG+AGG | 0.705889 | 8.1:+30876839 | MS.gene76443:CDS |
TCCTATTCATCTTAGCACTG+TGG | 0.711732 | 8.1:-30876822 | None:intergenic |
TTCCGGCTAAGATACGACCC+CGG | 0.732863 | 8.1:-30876795 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTTTTTTTTATAAAAC+AGG | + | chr8.1:30876727-30876746 | MS.gene76443:intron | 10.0% |
!! | GAAATTGAAAAATAAATCAA+TGG | - | chr8.1:30875541-30875560 | None:intergenic | 15.0% |
!! | TGTTTGTAAATAAATAATAG+TGG | + | chr8.1:30876328-30876347 | MS.gene76443:intron | 15.0% |
!! | CTAAAAAAAAATGTAGTCTT+TGG | + | chr8.1:30875995-30876014 | MS.gene76443:intron | 20.0% |
!! | TAAAGCAAAATTGAGTTAAA+TGG | + | chr8.1:30876049-30876068 | MS.gene76443:intron | 20.0% |
!! | TAAGTGTGCAAATAAAAAAT+GGG | - | chr8.1:30876924-30876943 | None:intergenic | 20.0% |
!! | TATTTATTTACAAACACAAC+AGG | - | chr8.1:30876324-30876343 | None:intergenic | 20.0% |
!! | TGTCTGTTTATATGATAAAT+TGG | + | chr8.1:30876294-30876313 | MS.gene76443:intron | 20.0% |
!!! | AGTAAAAAAAAAGCACAAAT+TGG | - | chr8.1:30875634-30875653 | None:intergenic | 20.0% |
!!! | ATTTATGTATGTTTTGATAC+TGG | + | chr8.1:30876171-30876190 | MS.gene76443:intron | 20.0% |
!!! | CAAAGACTACATTTTTTTTT+AGG | - | chr8.1:30875997-30876016 | None:intergenic | 20.0% |
!!! | GAAGGTAATGTTTAATTTTA+GGG | + | chr8.1:30875802-30875821 | MS.gene76443:intron | 20.0% |
!!! | GTAAAAAAAAAGCACAAATT+GGG | - | chr8.1:30875633-30875652 | None:intergenic | 20.0% |
!!! | TATGTTCTAAACTTACATAT+AGG | + | chr8.1:30875837-30875856 | MS.gene76443:intron | 20.0% |
!!! | TGAAGGTAATGTTTAATTTT+AGG | + | chr8.1:30875801-30875820 | MS.gene76443:intron | 20.0% |
! | AAACTTACATATAGGAATGT+AGG | + | chr8.1:30875845-30875864 | MS.gene76443:intron | 25.0% |
! | AAATTAAACATTACCTTCAG+TGG | - | chr8.1:30875800-30875819 | None:intergenic | 25.0% |
! | AACTAAAACAAATACACTCA+AGG | - | chr8.1:30875889-30875908 | None:intergenic | 25.0% |
! | AACTTACATATAGGAATGTA+GGG | + | chr8.1:30875846-30875865 | MS.gene76443:intron | 25.0% |
! | AAGTGTGCAAATAAAAAATG+GGG | - | chr8.1:30876923-30876942 | None:intergenic | 25.0% |
! | AATTTCACTTTCAAAGTAAC+TGG | - | chr8.1:30876625-30876644 | None:intergenic | 25.0% |
! | CTAAGTGTGCAAATAAAAAA+TGG | - | chr8.1:30876925-30876944 | None:intergenic | 25.0% |
! | GTTATGGTTATGTTATGTTA+CGG | + | chr8.1:30876479-30876498 | MS.gene76443:intron | 25.0% |
! | TTAGATAAGGATAGAAACAT+TGG | + | chr8.1:30876089-30876108 | MS.gene76443:intron | 25.0% |
! | TTCTATAGAAAGCAAAAGAA+AGG | - | chr8.1:30877102-30877121 | None:intergenic | 25.0% |
!! | GCAATACTTATTCTAGTTAT+TGG | + | chr8.1:30876372-30876391 | MS.gene76443:intron | 25.0% |
!! | GTATTGAGACATGTAATTTT+TGG | + | chr8.1:30876457-30876476 | MS.gene76443:intron | 25.0% |
!!! | ACTTTATTAAGAAGTATCAG+AGG | + | chr8.1:30876872-30876891 | MS.gene76443:CDS | 25.0% |
!!! | AGACATGTAATTTTTGGTTA+TGG | + | chr8.1:30876463-30876482 | MS.gene76443:intron | 25.0% |
!!! | ATTTTAGTCCTCAAATGTAT+TGG | + | chr8.1:30875913-30875932 | MS.gene76443:intron | 25.0% |
!!! | TTCTGTTTCTAATACAGAAA+TGG | + | chr8.1:30876704-30876723 | MS.gene76443:intron | 25.0% |
AAAATACAGAGATAGAAGGA+AGG | - | chr8.1:30875510-30875529 | None:intergenic | 30.0% | |
ACACTTGCAAGACATAATAT+AGG | - | chr8.1:30876552-30876571 | None:intergenic | 30.0% | |
ACAGAGGAGTAACAAAAAAA+GGG | - | chr8.1:30876965-30876984 | None:intergenic | 30.0% | |
ACATACCATAGAAACACTTT+GGG | - | chr8.1:30875598-30875617 | None:intergenic | 30.0% | |
ATGCAAAGCACAATTAGATA+AGG | + | chr8.1:30876076-30876095 | MS.gene76443:intron | 30.0% | |
ATGTTATTATTGGACAATGC+AGG | + | chr8.1:30877057-30877076 | MS.gene76443:CDS | 30.0% | |
ATTGAATTCCTTTCAGACTA+TGG | + | chr8.1:30876896-30876915 | MS.gene76443:intron | 30.0% | |
TACATACCATAGAAACACTT+TGG | - | chr8.1:30875599-30875618 | None:intergenic | 30.0% | |
TAGAGTAGTTGCACAAATAA+AGG | - | chr8.1:30877179-30877198 | None:intergenic | 30.0% | |
TATAGACCAATTCTTTCAAG+CGG | - | chr8.1:30876508-30876527 | None:intergenic | 30.0% | |
TCCAAAAATACAGAGATAGA+AGG | - | chr8.1:30875514-30875533 | None:intergenic | 30.0% | |
TCCTCAAATGTATTGGATTT+GGG | + | chr8.1:30875920-30875939 | MS.gene76443:intron | 30.0% | |
TGAATAGGACTATTATTGTC+AGG | + | chr8.1:30876836-30876855 | MS.gene76443:CDS | 30.0% | |
TGCATTGTCCAATAATAACA+TGG | - | chr8.1:30877058-30877077 | None:intergenic | 30.0% | |
TTCAATTTCTTTGTTGCAGA+CGG | + | chr8.1:30875552-30875571 | MS.gene76443:intron | 30.0% | |
TTTATTTGTGCAACTACTCT+AGG | + | chr8.1:30877178-30877197 | MS.gene76443:intron | 30.0% | |
! | ATTGTTAATAGCTCTGTGTA+TGG | + | chr8.1:30876666-30876685 | MS.gene76443:intron | 30.0% |
! | TCCTTCTATCTCTGTATTTT+TGG | + | chr8.1:30875510-30875529 | MS.gene76443:intron | 30.0% |
!! | ACACTATTTCTTTTGCATAG+TGG | + | chr8.1:30876128-30876147 | MS.gene76443:intron | 30.0% |
AGTTCGAAGAAATCTGGTAA+GGG | + | chr8.1:30875703-30875722 | MS.gene76443:intron | 35.0% | |
ATAGGACTATTATTGTCAGG+AGG | + | chr8.1:30876839-30876858 | MS.gene76443:CDS | 35.0% | |
CCTCAAATGTATTGGATTTG+GGG | + | chr8.1:30875921-30875940 | MS.gene76443:intron | 35.0% | |
GAAGGAGACCATGTTATTAT+TGG | + | chr8.1:30877047-30877066 | MS.gene76443:CDS | 35.0% | |
GACAGAGGAGTAACAAAAAA+AGG | - | chr8.1:30876966-30876985 | None:intergenic | 35.0% | |
GTCCTCAAATGTATTGGATT+TGG | + | chr8.1:30875919-30875938 | MS.gene76443:intron | 35.0% | |
! | AATAGCTCTGTGTATGGTTA+CGG | + | chr8.1:30876672-30876691 | MS.gene76443:intron | 35.0% |
! | AATCGTTTCTGGAAATCAGT+TGG | + | chr8.1:30875748-30875767 | MS.gene76443:CDS | 35.0% |
! | TATGTCTTGCAAGTGTTGTT+GGG | + | chr8.1:30876556-30876575 | MS.gene76443:intron | 35.0% |
! | TGTAGGGATAAACAGCATTT+TGG | + | chr8.1:30875862-30875881 | MS.gene76443:intron | 35.0% |
! | TTATGTCTTGCAAGTGTTGT+TGG | + | chr8.1:30876555-30876574 | MS.gene76443:intron | 35.0% |
! | TTTTTGTTACTCCTCTGTCT+AGG | + | chr8.1:30876967-30876986 | MS.gene76443:intron | 35.0% |
AGATTCCTCTTGGCAATATC+AGG | + | chr8.1:30876229-30876248 | MS.gene76443:intron | 40.0% | |
CAATGCAGGTGAGACTTTAT+AGG | + | chr8.1:30877071-30877090 | MS.gene76443:intron | 40.0% | |
CAGTTCGAAGAAATCTGGTA+AGG | + | chr8.1:30875702-30875721 | MS.gene76443:intron | 40.0% | |
CCCCAAATCCAATACATTTG+AGG | - | chr8.1:30875924-30875943 | None:intergenic | 40.0% | |
GAAAAGGTGGAAATCGTTTC+TGG | + | chr8.1:30875737-30875756 | MS.gene76443:CDS | 40.0% | |
GTTCGAAGAAATCTGGTAAG+GGG | + | chr8.1:30875704-30875723 | MS.gene76443:intron | 40.0% | |
TAATAGAGCCTCACATTCGA+GGG | + | chr8.1:30875955-30875974 | MS.gene76443:intron | 40.0% | |
TCCTATTCATCTTAGCACTG+TGG | - | chr8.1:30876825-30876844 | None:intergenic | 40.0% | |
TGGACACTTCTTGTCAATGT+AGG | - | chr8.1:30876755-30876774 | None:intergenic | 40.0% | |
TGTTGCAGTTCGAAGAAATC+TGG | + | chr8.1:30875697-30875716 | MS.gene76443:intron | 40.0% | |
! | AAACGATTTCCACCTTTTCC+TGG | - | chr8.1:30875736-30875755 | None:intergenic | 40.0% |
! | AGCAACCCAAAGTGTTTCTA+TGG | + | chr8.1:30875590-30875609 | MS.gene76443:CDS | 40.0% |
! | ATCACCTTGTTTCCGTGTTA+AGG | + | chr8.1:30877025-30877044 | MS.gene76443:CDS | 40.0% |
! | TGTTTGTCTGAGATTCCTCT+TGG | + | chr8.1:30876219-30876238 | MS.gene76443:intron | 40.0% |
! | TTCTGGAAATCAGTTGGTCT+TGG | + | chr8.1:30875754-30875773 | MS.gene76443:CDS | 40.0% |
AAACAAGGTGATACGTGAGC+GGG | - | chr8.1:30877017-30877036 | None:intergenic | 45.0% | |
AATGGGGACCATAGTCTGAA+AGG | - | chr8.1:30876907-30876926 | None:intergenic | 45.0% | |
AGAAATCTGGTAAGGGGAAG+AGG | + | chr8.1:30875710-30875729 | MS.gene76443:CDS | 45.0% | |
ATCTAGTGGTGCAGGAAAGA+AGG | + | chr8.1:30877254-30877273 | MS.gene76443:CDS | 45.0% | |
ATGGAAACATTGCCGGTGAA+TGG | - | chr8.1:30876775-30876794 | None:intergenic | 45.0% | |
ATTACCTTCAGTGGCTTCTC+TGG | - | chr8.1:30875791-30875810 | None:intergenic | 45.0% | |
CATGGTCTCCTTCCTTAACA+CGG | - | chr8.1:30877040-30877059 | None:intergenic | 45.0% | |
CCTTCCTTAACACGGAAACA+AGG | - | chr8.1:30877032-30877051 | None:intergenic | 45.0% | |
CGGTATCCGCTTGAAAGAAT+TGG | + | chr8.1:30876499-30876518 | MS.gene76443:intron | 45.0% | |
CTCTGTCTAGGTATGAGAAG+AGG | + | chr8.1:30876979-30876998 | MS.gene76443:intron | 45.0% | |
CTCTTCTCATACCTAGACAG+AGG | - | chr8.1:30876981-30877000 | None:intergenic | 45.0% | |
GAAACAAGGTGATACGTGAG+CGG | - | chr8.1:30877018-30877037 | None:intergenic | 45.0% | |
GCCACAGTGCTAAGATGAAT+AGG | + | chr8.1:30876821-30876840 | MS.gene76443:CDS | 45.0% | |
GTAATAGAGCCTCACATTCG+AGG | + | chr8.1:30875954-30875973 | MS.gene76443:intron | 45.0% | |
TTACCTTCAGTGGCTTCTCT+GGG | - | chr8.1:30875790-30875809 | None:intergenic | 45.0% | |
TTCCTCTTGGCAATATCAGG+TGG | + | chr8.1:30876232-30876251 | MS.gene76443:intron | 45.0% | |
TTCTTTGTTGCAGACGGAGA+AGG | + | chr8.1:30875558-30875577 | MS.gene76443:intron | 45.0% | |
! | CCTTGTTTCCGTGTTAAGGA+AGG | + | chr8.1:30877029-30877048 | MS.gene76443:CDS | 45.0% |
! | GCAGGAAAGAAGGCTTTTAC+TGG | + | chr8.1:30877264-30877283 | MS.gene76443:CDS | 45.0% |
! | TCTTGCAAGTGTTGTTGGGA+AGG | + | chr8.1:30876560-30876579 | MS.gene76443:intron | 45.0% |
!! | CTGAGCGTCTAGCTTTGTAT+TGG | + | chr8.1:30876194-30876213 | MS.gene76443:intron | 45.0% |
!! | GACAAGAAGTGTCCATTCAC+CGG | + | chr8.1:30876760-30876779 | MS.gene76443:CDS | 45.0% |
AACCTCACAGTCTTGGAGAG+TGG | - | chr8.1:30877204-30877223 | None:intergenic | 50.0% | |
AGCCACCTGATATTGCCAAG+AGG | - | chr8.1:30876237-30876256 | None:intergenic | 50.0% | |
ATCCCAGCTGGATCATCTAG+TGG | + | chr8.1:30877240-30877259 | MS.gene76443:CDS | 50.0% | |
CACCACTAGATGATCCAGCT+GGG | - | chr8.1:30877245-30877264 | None:intergenic | 50.0% | |
CACGTTGAACCTCACAGTCT+TGG | - | chr8.1:30877211-30877230 | None:intergenic | 50.0% | |
CTTAGCACTGTGGCAAGTTC+CGG | - | chr8.1:30876815-30876834 | None:intergenic | 50.0% | |
GTGTTGAAAGTGATCCCAGC+TGG | + | chr8.1:30877228-30877247 | MS.gene76443:CDS | 50.0% | |
GTTATGCTCCCTCGAATGTG+AGG | - | chr8.1:30875966-30875985 | None:intergenic | 50.0% | |
TACCTTCAGTGGCTTCTCTG+GGG | - | chr8.1:30875789-30875808 | None:intergenic | 50.0% | |
TCACCGGCAATGTTTCCATC+CGG | + | chr8.1:30876776-30876795 | MS.gene76443:CDS | 50.0% | |
AAGGGGAAGAGGCCAGGAAA+AGG | + | chr8.1:30875721-30875740 | MS.gene76443:CDS | 55.0% | |
ACCCCGGATGGAAACATTGC+CGG | - | chr8.1:30876782-30876801 | None:intergenic | 55.0% | |
ACCGGCAATGTTTCCATCCG+GGG | + | chr8.1:30876778-30876797 | MS.gene76443:CDS | 55.0% | |
ACCTTCAGTGGCTTCTCTGG+GGG | - | chr8.1:30875788-30875807 | None:intergenic | 55.0% | |
ATCCGGGGTCGTATCTTAGC+CGG | + | chr8.1:30876793-30876812 | MS.gene76443:CDS | 55.0% | |
CACCGGCAATGTTTCCATCC+GGG | + | chr8.1:30876777-30876796 | MS.gene76443:CDS | 55.0% | |
GCACCACTAGATGATCCAGC+TGG | - | chr8.1:30877246-30877265 | None:intergenic | 55.0% | |
GCTGGATCATCTAGTGGTGC+AGG | + | chr8.1:30877246-30877265 | MS.gene76443:CDS | 55.0% | |
TTCCGGCTAAGATACGACCC+CGG | - | chr8.1:30876798-30876817 | None:intergenic | 55.0% | |
ACCCCCAGAGAAGCCACTGA+AGG | + | chr8.1:30875784-30875803 | MS.gene76443:CDS | 60.0% | |
GGCCACTCTCCAAGACTGTG+AGG | + | chr8.1:30877199-30877218 | MS.gene76443:intron | 60.0% | |
GGCTAAGATACGACCCCGGA+TGG | - | chr8.1:30876794-30876813 | None:intergenic | 60.0% | |
GGGAAGAGGCCAGGAAAAGG+TGG | + | chr8.1:30875724-30875743 | MS.gene76443:CDS | 60.0% | |
TCTGGTAAGGGGAAGAGGCC+AGG | + | chr8.1:30875715-30875734 | MS.gene76443:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 30875475 | 30877293 | 30875475 | ID=MS.gene76443 |
chr8.1 | mRNA | 30875475 | 30877293 | 30875475 | ID=MS.gene76443.t1;Parent=MS.gene76443 |
chr8.1 | exon | 30875475 | 30875486 | 30875475 | ID=MS.gene76443.t1.exon1;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30875475 | 30875486 | 30875475 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
chr8.1 | exon | 30875571 | 30875611 | 30875571 | ID=MS.gene76443.t1.exon2;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30875571 | 30875611 | 30875571 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
chr8.1 | exon | 30875705 | 30875805 | 30875705 | ID=MS.gene76443.t1.exon3;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30875705 | 30875805 | 30875705 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
chr8.1 | exon | 30876749 | 30876893 | 30876749 | ID=MS.gene76443.t1.exon4;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30876749 | 30876893 | 30876749 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
chr8.1 | exon | 30876989 | 30877078 | 30876989 | ID=MS.gene76443.t1.exon5;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30876989 | 30877078 | 30876989 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
chr8.1 | exon | 30877200 | 30877293 | 30877200 | ID=MS.gene76443.t1.exon6;Parent=MS.gene76443.t1 |
chr8.1 | CDS | 30877200 | 30877293 | 30877200 | ID=cds.MS.gene76443.t1;Parent=MS.gene76443.t1 |
Gene Sequence |
Protein sequence |