AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012045


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012045.t1 MTR_8g076830 100.000 160 0 0 1 160 1 160 1.21e-117 329
MS.gene012045.t1 MTR_4g116410 97.500 160 4 0 1 160 1 160 6.73e-115 322
MS.gene012045.t1 MTR_1g017780 93.168 161 10 1 1 160 1 161 2.44e-99 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012045.t1 AT3G48930 91.250 160 14 0 1 160 1 160 6.64e-98 279
MS.gene012045.t1 AT5G23740 90.000 160 15 1 1 160 1 159 4.99e-96 274
MS.gene012045.t1 AT4G30800 90.625 160 14 1 1 160 1 159 4.19e-94 270

Find 0 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAAATAATATCAA+TGG - 57556:385-404 MS.gene012045:intergenic 10.0%
!! ATAAAAAAAAAAACAGAAAT+TGG - 57556:479-498 MS.gene012045:intergenic 10.0%
!! TAAAAAAAAAAACAGAAATT+GGG - 57556:478-497 MS.gene012045:intergenic 10.0%
!! TAAAAAAAAAATGTAGTCTT+TGG + 57556:842-861 MS.gene012045:intron 15.0%
!! TGTTTGTAAATAAATAATAG+TGG + 57556:1175-1194 MS.gene012045:intron 15.0%
!!! AAAGACTACATTTTTTTTTT+AGG - 57556:843-862 MS.gene012045:intergenic 15.0%
!! TAAAGCAAAATTGAGTTAAA+TGG + 57556:896-915 MS.gene012045:intron 20.0%
!! TAAGTGTGCAAATAAAAAAT+GGG - 57556:1924-1943 MS.gene012045:intergenic 20.0%
!! TATTTATTTACAAACACAAC+AGG - 57556:1171-1190 MS.gene012045:intergenic 20.0%
!! TGTCTGTTTATATGATAAAT+TGG + 57556:1141-1160 MS.gene012045:intron 20.0%
!!! ATTTATGTATGTTTTGATAC+TGG + 57556:1018-1037 MS.gene012045:intron 20.0%
!!! GAAGGTAATGTTTAATTTTA+GGG + 57556:648-667 MS.gene012045:intron 20.0%
!!! GGCATTTTTTTTTATAAAAC+AGG + 57556:1728-1747 MS.gene012045:intron 20.0%
!!! TATGTTCTAAACTTACATAT+AGG + 57556:683-702 MS.gene012045:intron 20.0%
!!! TGAAGGTAATGTTTAATTTT+AGG + 57556:647-666 MS.gene012045:intron 20.0%
! AAACTTACATATAGGAATGT+AGG + 57556:691-710 MS.gene012045:intron 25.0%
! AAATTAAACATTACCTTCAG+TGG - 57556:646-665 MS.gene012045:intergenic 25.0%
! AACTAAAACAAATACACTCA+AGG - 57556:735-754 MS.gene012045:intergenic 25.0%
! AACTTACATATAGGAATGTA+GGG + 57556:692-711 MS.gene012045:intron 25.0%
! AAGTGTGCAAATAAAAAATG+GGG - 57556:1923-1942 MS.gene012045:intergenic 25.0%
! AATTTCACTTTCAAAGTAAC+TGG - 57556:1472-1491 MS.gene012045:intergenic 25.0%
! CTAAGTGTGCAAATAAAAAA+TGG - 57556:1925-1944 MS.gene012045:intergenic 25.0%
! GTTATGGTTATGTTATGTTA+CGG + 57556:1326-1345 MS.gene012045:intron 25.0%
! TATTGAATTCCTTCATACTA+TGG + 57556:1896-1915 MS.gene012045:intron 25.0%
! TTAGATAAGGATAGAAACAT+TGG + 57556:936-955 MS.gene012045:intron 25.0%
! TTCTATAGAAAGCAAAAGAA+AGG - 57556:2102-2121 MS.gene012045:intergenic 25.0%
!! GCAATACTTATTCTAGTTAT+TGG + 57556:1219-1238 MS.gene012045:intron 25.0%
!! GTATTGAGACATGTAATTTT+TGG + 57556:1304-1323 MS.gene012045:intron 25.0%
!!! ACTTTATTAAGAAGTATCAG+AGG + 57556:1873-1892 MS.gene012045:CDS 25.0%
!!! AGACATGTAATTTTTGGTTA+TGG + 57556:1310-1329 MS.gene012045:intron 25.0%
!!! ATTTTAGTCCTCAAATGTAT+TGG + 57556:759-778 MS.gene012045:intron 25.0%
!!! TTCTGTTTCTAATACAGAAA+TGG + 57556:1707-1726 MS.gene012045:intron 25.0%
ACACTTGCAAGACATAATAT+AGG - 57556:1399-1418 MS.gene012045:intergenic 30.0%
ACAGAGGAGTAACAAAAAAA+GGG - 57556:1965-1984 MS.gene012045:intergenic 30.0%
ACATACCATAGAAACACTTT+GGG - 57556:443-462 MS.gene012045:intergenic 30.0%
ATGCAAAGCACAATTAGATA+AGG + 57556:923-942 MS.gene012045:intron 30.0%
ATGTTATTATTGGACAATGC+AGG + 57556:2057-2076 MS.gene012045:CDS 30.0%
TACATACCATAGAAACACTT+TGG - 57556:444-463 MS.gene012045:intergenic 30.0%
TAGAGTAGTTGCACAAATAA+AGG - 57556:2179-2198 MS.gene012045:intergenic 30.0%
TATAGACCAATTCTTTCAAG+CGG - 57556:1355-1374 MS.gene012045:intergenic 30.0%
TCCTCAAATGTATTGGATTT+GGG + 57556:766-785 MS.gene012045:intron 30.0%
TGAATAGGACTATTATTGTC+AGG + 57556:1837-1856 MS.gene012045:CDS 30.0%
TGCATTGTCCAATAATAACA+TGG - 57556:2058-2077 MS.gene012045:intergenic 30.0%
TTTATTTGTGCAACTACTCT+AGG + 57556:2178-2197 MS.gene012045:intron 30.0%
! ATTGTTAATAGCTCTGTGTA+TGG + 57556:1513-1532 MS.gene012045:intron 30.0%
AAGATACAGAGATAGAACGA+AGG - 57556:354-373 MS.gene012044:intergenic 35.0%
AGTTCGAAGAAATCTGGTAA+GGG + 57556:549-568 MS.gene012045:intron 35.0%
ATAGGACTATTATTGTCAGG+AGG + 57556:1840-1859 MS.gene012045:CDS 35.0%
CCTCAAATGTATTGGATTTG+GGG + 57556:767-786 MS.gene012045:intron 35.0%
GAAGGAGACCATGTTATTAT+TGG + 57556:2047-2066 MS.gene012045:CDS 35.0%
GACAGAGGAGTAACAAAAAA+AGG - 57556:1966-1985 MS.gene012045:intergenic 35.0%
GTCCTCAAATGTATTGGATT+TGG + 57556:765-784 MS.gene012045:intron 35.0%
TCGTTCTATCTCTGTATCTT+TGG + 57556:354-373 MS.gene012045:intron 35.0%
TTCTTTGTTACAGACTGAGA+AGG + 57556:403-422 MS.gene012045:intron 35.0%
! AATAGCTCTGTGTATGGTTA+CGG + 57556:1519-1538 MS.gene012045:intron 35.0%
! AATCGTTTCTGGAAATCAGT+TGG + 57556:594-613 MS.gene012045:CDS 35.0%
! TATGTCTTGCAAGTGTTGTT+GGG + 57556:1403-1422 MS.gene012045:intron 35.0%
! TGTAGGGATAAACAGCATTT+TGG + 57556:708-727 MS.gene012045:intron 35.0%
! TTATGTCTTGCAAGTGTTGT+TGG + 57556:1402-1421 MS.gene012045:intron 35.0%
! TTTTTGTTACTCCTCTGTCT+AGG + 57556:1967-1986 MS.gene012045:intron 35.0%
!!! ACGCTATTTCTTTTGCATAG+TGG + 57556:975-994 MS.gene012045:intron 35.0%
AAATGGGGACCATAGTATGA+AGG - 57556:1908-1927 MS.gene012044:intergenic 40.0%
AGATTCCTCTTGGCAATATC+AGG + 57556:1076-1095 MS.gene012045:intron 40.0%
CAATGCAGGTGAGACTTTAT+AGG + 57556:2071-2090 MS.gene012045:intron 40.0%
CAGTTCGAAGAAATCTGGTA+AGG + 57556:548-567 MS.gene012045:intron 40.0%
CCCCAAATCCAATACATTTG+AGG - 57556:770-789 MS.gene012045:intergenic 40.0%
GAAAAGGTGGAAATCGTTTC+TGG + 57556:583-602 MS.gene012045:CDS 40.0%
GTTCGAAGAAATCTGGTAAG+GGG + 57556:550-569 MS.gene012045:intron 40.0%
TAATAGAGCCTCACATTCGA+GGG + 57556:801-820 MS.gene012045:intron 40.0%
TCCTATTCATCTTAGCACTG+TGG - 57556:1826-1845 MS.gene012045:intergenic 40.0%
TGGACACTTCTTGTCAATGT+AGG - 57556:1756-1775 MS.gene012045:intergenic 40.0%
TGTTGCAGTTCGAAGAAATC+TGG + 57556:543-562 MS.gene012045:intron 40.0%
! AAACGATTTCCACCTTTTCC+AGG - 57556:582-601 MS.gene012045:intergenic 40.0%
! AGCAACCCAAAGTGTTTCTA+TGG + 57556:435-454 MS.gene012045:CDS 40.0%
! TGTTTGTCTGAGATTCCTCT+TGG + 57556:1066-1085 MS.gene012045:intron 40.0%
! TTCTGGAAATCAGTTGGTCT+TGG + 57556:600-619 MS.gene012045:CDS 40.0%
AGAAATCTGGTAAGGGGAAG+AGG + 57556:556-575 MS.gene012045:CDS 45.0%
ATCACCTTGCTTCCGTGTTA+AGG + 57556:2025-2044 MS.gene012045:CDS 45.0%
ATCTAGTGGTGCAGGAAAGA+AGG + 57556:2254-2273 MS.gene012045:CDS 45.0%
ATGGAAACATTGCCGGTGAA+TGG - 57556:1776-1795 MS.gene012045:intergenic 45.0%
ATTACCTTCAGTGGCTTCTC+TGG - 57556:637-656 MS.gene012045:intergenic 45.0%
CATGGTCTCCTTCCTTAACA+CGG - 57556:2040-2059 MS.gene012045:intergenic 45.0%
CGGTATCCGCTTGAAAGAAT+TGG + 57556:1346-1365 MS.gene012045:intron 45.0%
CTCTGTCTAGGTATGAGAAG+AGG + 57556:1979-1998 MS.gene012045:intron 45.0%
CTCTTCTCATACCTAGACAG+AGG - 57556:1981-2000 MS.gene012045:intergenic 45.0%
GCCACAGTGCTAAGATGAAT+AGG + 57556:1822-1841 MS.gene012045:CDS 45.0%
GTAATAGAGCCTCACATTCG+AGG + 57556:800-819 MS.gene012045:intron 45.0%
TTACCTTCAGTGGCTTCTCT+GGG - 57556:636-655 MS.gene012045:intergenic 45.0%
TTCCTCTTGGCAATATCAGG+TGG + 57556:1079-1098 MS.gene012045:intron 45.0%
! GCAGGAAAGAAGGCTTTTAC+TGG + 57556:2264-2283 MS.gene012045:CDS 45.0%
! TCTTGCAAGTGTTGTTGGGA+AGG + 57556:1407-1426 MS.gene012045:intron 45.0%
!! CTGAGCGTCTAGCTTTGTAT+TGG + 57556:1041-1060 MS.gene012045:intron 45.0%
!! GACAAGAAGTGTCCATTCAC+CGG + 57556:1761-1780 MS.gene012045:CDS 45.0%
AACCTCACAGTCTTGGAGAG+TGG - 57556:2204-2223 MS.gene012044:intergenic 50.0%
AAGCAAGGTGATACGTGAGC+GGG - 57556:2017-2036 MS.gene012044:intergenic 50.0%
AGCCACCTGATATTGCCAAG+AGG - 57556:1084-1103 MS.gene012045:intergenic 50.0%
ATCCCAGCTGGATCATCTAG+TGG + 57556:2240-2259 MS.gene012045:CDS 50.0%
CACCACTAGATGATCCAGCT+GGG - 57556:2245-2264 MS.gene012045:intergenic 50.0%
CACGTTGAACCTCACAGTCT+TGG - 57556:2211-2230 MS.gene012045:intergenic 50.0%
CCTTCCTTAACACGGAAGCA+AGG - 57556:2032-2051 MS.gene012045:intergenic 50.0%
CCTTGCTTCCGTGTTAAGGA+AGG + 57556:2029-2048 MS.gene012045:CDS 50.0%
CTTAGCACTGTGGCAAGTTC+CGG - 57556:1816-1835 MS.gene012045:intergenic 50.0%
GAAGCAAGGTGATACGTGAG+CGG - 57556:2018-2037 MS.gene012045:intergenic 50.0%
GTGTTGAAAGTGATCCCAGC+TGG + 57556:2228-2247 MS.gene012045:CDS 50.0%
GTTATGCTCCCTCGAATGTG+AGG - 57556:812-831 MS.gene012045:intergenic 50.0%
TACCTTCAGTGGCTTCTCTG+GGG - 57556:635-654 MS.gene012045:intergenic 50.0%
TCACCGGCAATGTTTCCATC+CGG + 57556:1777-1796 MS.gene012045:CDS 50.0%
AAGGGGAAGAGGCCTGGAAA+AGG + 57556:567-586 MS.gene012045:CDS 55.0%
ACCCCGGATGGAAACATTGC+CGG - 57556:1783-1802 MS.gene012045:intergenic 55.0%
ACCGGCAATGTTTCCATCCG+GGG + 57556:1779-1798 MS.gene012045:CDS 55.0%
ACCTTCAGTGGCTTCTCTGG+GGG - 57556:634-653 MS.gene012045:intergenic 55.0%
ATCCGGGGTCGTATCTTAGC+CGG + 57556:1794-1813 MS.gene012045:CDS 55.0%
CACCGGCAATGTTTCCATCC+GGG + 57556:1778-1797 MS.gene012045:CDS 55.0%
GCACCACTAGATGATCCAGC+TGG - 57556:2246-2265 MS.gene012045:intergenic 55.0%
GCTGGATCATCTAGTGGTGC+AGG + 57556:2246-2265 MS.gene012045:CDS 55.0%
TTCCGGCTAAGATACGACCC+CGG - 57556:1799-1818 MS.gene012045:intergenic 55.0%
ACCCCCAGAGAAGCCACTGA+AGG + 57556:630-649 MS.gene012045:CDS 60.0%
GGCCACTCTCCAAGACTGTG+AGG + 57556:2199-2218 MS.gene012045:intron 60.0%
GGCTAAGATACGACCCCGGA+TGG - 57556:1795-1814 MS.gene012045:intergenic 60.0%
GGGAAGAGGCCTGGAAAAGG+TGG + 57556:570-589 MS.gene012045:CDS 60.0%
TCTGGTAAGGGGAAGAGGCC+TGG + 57556:561-580 MS.gene012045:CDS 60.0%


Chromosome Type Strat End Strand Name
57556 gene 319 2293 319 ID=MS.gene012045
57556 mRNA 319 2293 319 ID=MS.gene012045.t1;Parent=MS.gene012045
57556 exon 319 330 319 ID=MS.gene012045.t1.exon1;Parent=MS.gene012045.t1
57556 CDS 319 330 319 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
57556 exon 416 456 416 ID=MS.gene012045.t1.exon2;Parent=MS.gene012045.t1
57556 CDS 416 456 416 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
57556 exon 551 651 551 ID=MS.gene012045.t1.exon3;Parent=MS.gene012045.t1
57556 CDS 551 651 551 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
57556 exon 1750 1894 1750 ID=MS.gene012045.t1.exon4;Parent=MS.gene012045.t1
57556 CDS 1750 1894 1750 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
57556 exon 1989 2078 1989 ID=MS.gene012045.t1.exon5;Parent=MS.gene012045.t1
57556 CDS 1989 2078 1989 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
57556 exon 2200 2293 2200 ID=MS.gene012045.t1.exon6;Parent=MS.gene012045.t1
57556 CDS 2200 2293 2200 ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1
Gene Sequence

>MS.gene012045

ATGGCTGAACAAGTAAGCAACTTCTTCACACTCCTTCGTTCTATCTCTGTATCTTTGGATCTTCCATTGATATTATTTTTCAATTTCTTTGTTACAGACTGAGAAGGCTTTTCTCAAGCAACCCAAAGTGTTTCTATGGTATGTATATTCAATGCTCCCAATTTCTGTTTTTTTTTTTATTGTGATTTTGATGAATGATTGTTGATGCATATTTTGTTCAATGTTGTTGCAGTTCGAAGAAATCTGGTAAGGGGAAGAGGCCTGGAAAAGGTGGAAATCGTTTCTGGAAATCAGTTGGTCTTGGATTCAAGACCCCCAGAGAAGCCACTGAAGGTAATGTTTAATTTTAGGGTGTTTTGCAAATTATGTTCTAAACTTACATATAGGAATGTAGGGATAAACAGCATTTTGGTCCTTGAGTGTATTTGTTTTAGTTAGTCATTTTAGTCCTCAAATGTATTGGATTTGGGGATATGCGTTTGTAATAGAGCCTCACATTCGAGGGAGCATAACAGTTGTTACCTAAAAAAAAAATGTAGTCTTTGGAATGAGACGAGATGACATATGCACTTTTTTTTAAAGCAAAATTGAGTTAAATGGCACTATGCAAAGCACAATTAGATAAGGATAGAAACATTGGAGAAGAATACTATAAGACGCTATTTCTTTTGCATAGTGGATTGCTAGTTACAATCATATATTTATGTATGTTTTGATACTGGCTGAGCGTCTAGCTTTGTATTGGTGTGTTTGTCTGAGATTCCTCTTGGCAATATCAGGTGGCTATGATGTGTTTAAATTCACAATACTTATTCTACTTAGTGTCTGTTTATATGATAAATTGGAGTGCCTGTTGTGTTTGTAAATAAATAATAGTGGTTATGATGTGTTTAAAGATTCGCAATACTTATTCTAGTTATTGGCTGTCATATGATTAATTGAAGTGTCTATTGTGTTCATAGATAAGCTTTTCTAATTCGTATCAGTATTGAGACATGTAATTTTTGGTTATGGTTATGTTATGTTACGGTATCCGCTTGAAAGAATTGGTCTATATAATGTACAAATGTAAATGCTCCTATATTATGTCTTGCAAGTGTTGTTGGGAAGGAAATACTTGTAAATTGCAAACAGTATAATGTTCTCGAGTCCAGTTACTTTGAAAGTGAAATTTTTATCAGCTAGAAGTAGAGCATTGTTAATAGCTCTGTGTATGGTTACGGTGTAAATGCTCCTATATTATGTCTTGCAAGTGTTGTTGGGAAGGAAATACTTGTAAATTGCAAACAGTATAATGTTCTCGAGTCCAGTTACTTTGAAAGTGAAATTTTTATCAGCTAGAAGTAGAGCATTGTTAATAGCTCTGTGTATGGTTACGGTTATTTTATTTCTGTTTCTAATACAGAAATGGCATTTTTTTTTATAAAACAGGAACCTACATTGACAAGAAGTGTCCATTCACCGGCAATGTTTCCATCCGGGGTCGTATCTTAGCCGGAACTTGCCACAGTGCTAAGATGAATAGGACTATTATTGTCAGGAGGAATTATCTTCACTTTATTAAGAAGTATCAGAGGTATTGAATTCCTTCATACTATGGTCCCCATTTTTTATTTGCACACTTAGAAACATAATTTTTAATTCCCTTTTTTTGTTACTCCTCTGTCTAGGTATGAGAAGAGGCATTCAAACATTCCCGCTCACGTATCACCTTGCTTCCGTGTTAAGGAAGGAGACCATGTTATTATTGGACAATGCAGGTGAGACTTTATAGGAGTATCCTTTCTTTTGCTTTCTATAGAAGATACTGTTATTTTAGTATATTATAGATATTGATATCTATGTCTGTCTAAATTGCCTTTATTTGTGCAACTACTCTAGGCCACTCTCCAAGACTGTGAGGTTCAACGTGTTGAAAGTGATCCCAGCTGGATCATCTAGTGGTGCAGGAAAGAAGGCTTTTACTGGAATGTGA

Protein sequence

>MS.gene012045.t1

MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM