Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012045.t1 | XP_003629390.1 | 100 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 5.70E-87 | 330.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012045.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 8.6e-84 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012045.t1 | B7FGL2 | 100.0 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 4.1e-87 | 330.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012045.t1 | MTR_8g076830 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.21e-117 | 329 |
| MS.gene012045.t1 | MTR_4g116410 | 97.500 | 160 | 4 | 0 | 1 | 160 | 1 | 160 | 6.73e-115 | 322 |
| MS.gene012045.t1 | MTR_1g017780 | 93.168 | 161 | 10 | 1 | 1 | 160 | 1 | 161 | 2.44e-99 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012045.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 6.64e-98 | 279 |
| MS.gene012045.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 4.99e-96 | 274 |
| MS.gene012045.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 4.19e-94 | 270 |
Find 0 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAAAATAATATCAA+TGG | - | 57556:385-404 | MS.gene012045:intergenic | 10.0% |
| !! | ATAAAAAAAAAAACAGAAAT+TGG | - | 57556:479-498 | MS.gene012045:intergenic | 10.0% |
| !! | TAAAAAAAAAAACAGAAATT+GGG | - | 57556:478-497 | MS.gene012045:intergenic | 10.0% |
| !! | TAAAAAAAAAATGTAGTCTT+TGG | + | 57556:842-861 | MS.gene012045:intron | 15.0% |
| !! | TGTTTGTAAATAAATAATAG+TGG | + | 57556:1175-1194 | MS.gene012045:intron | 15.0% |
| !!! | AAAGACTACATTTTTTTTTT+AGG | - | 57556:843-862 | MS.gene012045:intergenic | 15.0% |
| !! | TAAAGCAAAATTGAGTTAAA+TGG | + | 57556:896-915 | MS.gene012045:intron | 20.0% |
| !! | TAAGTGTGCAAATAAAAAAT+GGG | - | 57556:1924-1943 | MS.gene012045:intergenic | 20.0% |
| !! | TATTTATTTACAAACACAAC+AGG | - | 57556:1171-1190 | MS.gene012045:intergenic | 20.0% |
| !! | TGTCTGTTTATATGATAAAT+TGG | + | 57556:1141-1160 | MS.gene012045:intron | 20.0% |
| !!! | ATTTATGTATGTTTTGATAC+TGG | + | 57556:1018-1037 | MS.gene012045:intron | 20.0% |
| !!! | GAAGGTAATGTTTAATTTTA+GGG | + | 57556:648-667 | MS.gene012045:intron | 20.0% |
| !!! | GGCATTTTTTTTTATAAAAC+AGG | + | 57556:1728-1747 | MS.gene012045:intron | 20.0% |
| !!! | TATGTTCTAAACTTACATAT+AGG | + | 57556:683-702 | MS.gene012045:intron | 20.0% |
| !!! | TGAAGGTAATGTTTAATTTT+AGG | + | 57556:647-666 | MS.gene012045:intron | 20.0% |
| ! | AAACTTACATATAGGAATGT+AGG | + | 57556:691-710 | MS.gene012045:intron | 25.0% |
| ! | AAATTAAACATTACCTTCAG+TGG | - | 57556:646-665 | MS.gene012045:intergenic | 25.0% |
| ! | AACTAAAACAAATACACTCA+AGG | - | 57556:735-754 | MS.gene012045:intergenic | 25.0% |
| ! | AACTTACATATAGGAATGTA+GGG | + | 57556:692-711 | MS.gene012045:intron | 25.0% |
| ! | AAGTGTGCAAATAAAAAATG+GGG | - | 57556:1923-1942 | MS.gene012045:intergenic | 25.0% |
| ! | AATTTCACTTTCAAAGTAAC+TGG | - | 57556:1472-1491 | MS.gene012045:intergenic | 25.0% |
| ! | CTAAGTGTGCAAATAAAAAA+TGG | - | 57556:1925-1944 | MS.gene012045:intergenic | 25.0% |
| ! | GTTATGGTTATGTTATGTTA+CGG | + | 57556:1326-1345 | MS.gene012045:intron | 25.0% |
| ! | TATTGAATTCCTTCATACTA+TGG | + | 57556:1896-1915 | MS.gene012045:intron | 25.0% |
| ! | TTAGATAAGGATAGAAACAT+TGG | + | 57556:936-955 | MS.gene012045:intron | 25.0% |
| ! | TTCTATAGAAAGCAAAAGAA+AGG | - | 57556:2102-2121 | MS.gene012045:intergenic | 25.0% |
| !! | GCAATACTTATTCTAGTTAT+TGG | + | 57556:1219-1238 | MS.gene012045:intron | 25.0% |
| !! | GTATTGAGACATGTAATTTT+TGG | + | 57556:1304-1323 | MS.gene012045:intron | 25.0% |
| !!! | ACTTTATTAAGAAGTATCAG+AGG | + | 57556:1873-1892 | MS.gene012045:CDS | 25.0% |
| !!! | AGACATGTAATTTTTGGTTA+TGG | + | 57556:1310-1329 | MS.gene012045:intron | 25.0% |
| !!! | ATTTTAGTCCTCAAATGTAT+TGG | + | 57556:759-778 | MS.gene012045:intron | 25.0% |
| !!! | TTCTGTTTCTAATACAGAAA+TGG | + | 57556:1707-1726 | MS.gene012045:intron | 25.0% |
| ACACTTGCAAGACATAATAT+AGG | - | 57556:1399-1418 | MS.gene012045:intergenic | 30.0% | |
| ACAGAGGAGTAACAAAAAAA+GGG | - | 57556:1965-1984 | MS.gene012045:intergenic | 30.0% | |
| ACATACCATAGAAACACTTT+GGG | - | 57556:443-462 | MS.gene012045:intergenic | 30.0% | |
| ATGCAAAGCACAATTAGATA+AGG | + | 57556:923-942 | MS.gene012045:intron | 30.0% | |
| ATGTTATTATTGGACAATGC+AGG | + | 57556:2057-2076 | MS.gene012045:CDS | 30.0% | |
| TACATACCATAGAAACACTT+TGG | - | 57556:444-463 | MS.gene012045:intergenic | 30.0% | |
| TAGAGTAGTTGCACAAATAA+AGG | - | 57556:2179-2198 | MS.gene012045:intergenic | 30.0% | |
| TATAGACCAATTCTTTCAAG+CGG | - | 57556:1355-1374 | MS.gene012045:intergenic | 30.0% | |
| TCCTCAAATGTATTGGATTT+GGG | + | 57556:766-785 | MS.gene012045:intron | 30.0% | |
| TGAATAGGACTATTATTGTC+AGG | + | 57556:1837-1856 | MS.gene012045:CDS | 30.0% | |
| TGCATTGTCCAATAATAACA+TGG | - | 57556:2058-2077 | MS.gene012045:intergenic | 30.0% | |
| TTTATTTGTGCAACTACTCT+AGG | + | 57556:2178-2197 | MS.gene012045:intron | 30.0% | |
| ! | ATTGTTAATAGCTCTGTGTA+TGG | + | 57556:1513-1532 | MS.gene012045:intron | 30.0% |
| AAGATACAGAGATAGAACGA+AGG | - | 57556:354-373 | MS.gene012044:intergenic | 35.0% | |
| AGTTCGAAGAAATCTGGTAA+GGG | + | 57556:549-568 | MS.gene012045:intron | 35.0% | |
| ATAGGACTATTATTGTCAGG+AGG | + | 57556:1840-1859 | MS.gene012045:CDS | 35.0% | |
| CCTCAAATGTATTGGATTTG+GGG | + | 57556:767-786 | MS.gene012045:intron | 35.0% | |
| GAAGGAGACCATGTTATTAT+TGG | + | 57556:2047-2066 | MS.gene012045:CDS | 35.0% | |
| GACAGAGGAGTAACAAAAAA+AGG | - | 57556:1966-1985 | MS.gene012045:intergenic | 35.0% | |
| GTCCTCAAATGTATTGGATT+TGG | + | 57556:765-784 | MS.gene012045:intron | 35.0% | |
| TCGTTCTATCTCTGTATCTT+TGG | + | 57556:354-373 | MS.gene012045:intron | 35.0% | |
| TTCTTTGTTACAGACTGAGA+AGG | + | 57556:403-422 | MS.gene012045:intron | 35.0% | |
| ! | AATAGCTCTGTGTATGGTTA+CGG | + | 57556:1519-1538 | MS.gene012045:intron | 35.0% |
| ! | AATCGTTTCTGGAAATCAGT+TGG | + | 57556:594-613 | MS.gene012045:CDS | 35.0% |
| ! | TATGTCTTGCAAGTGTTGTT+GGG | + | 57556:1403-1422 | MS.gene012045:intron | 35.0% |
| ! | TGTAGGGATAAACAGCATTT+TGG | + | 57556:708-727 | MS.gene012045:intron | 35.0% |
| ! | TTATGTCTTGCAAGTGTTGT+TGG | + | 57556:1402-1421 | MS.gene012045:intron | 35.0% |
| ! | TTTTTGTTACTCCTCTGTCT+AGG | + | 57556:1967-1986 | MS.gene012045:intron | 35.0% |
| !!! | ACGCTATTTCTTTTGCATAG+TGG | + | 57556:975-994 | MS.gene012045:intron | 35.0% |
| AAATGGGGACCATAGTATGA+AGG | - | 57556:1908-1927 | MS.gene012044:intergenic | 40.0% | |
| AGATTCCTCTTGGCAATATC+AGG | + | 57556:1076-1095 | MS.gene012045:intron | 40.0% | |
| CAATGCAGGTGAGACTTTAT+AGG | + | 57556:2071-2090 | MS.gene012045:intron | 40.0% | |
| CAGTTCGAAGAAATCTGGTA+AGG | + | 57556:548-567 | MS.gene012045:intron | 40.0% | |
| CCCCAAATCCAATACATTTG+AGG | - | 57556:770-789 | MS.gene012045:intergenic | 40.0% | |
| GAAAAGGTGGAAATCGTTTC+TGG | + | 57556:583-602 | MS.gene012045:CDS | 40.0% | |
| GTTCGAAGAAATCTGGTAAG+GGG | + | 57556:550-569 | MS.gene012045:intron | 40.0% | |
| TAATAGAGCCTCACATTCGA+GGG | + | 57556:801-820 | MS.gene012045:intron | 40.0% | |
| TCCTATTCATCTTAGCACTG+TGG | - | 57556:1826-1845 | MS.gene012045:intergenic | 40.0% | |
| TGGACACTTCTTGTCAATGT+AGG | - | 57556:1756-1775 | MS.gene012045:intergenic | 40.0% | |
| TGTTGCAGTTCGAAGAAATC+TGG | + | 57556:543-562 | MS.gene012045:intron | 40.0% | |
| ! | AAACGATTTCCACCTTTTCC+AGG | - | 57556:582-601 | MS.gene012045:intergenic | 40.0% |
| ! | AGCAACCCAAAGTGTTTCTA+TGG | + | 57556:435-454 | MS.gene012045:CDS | 40.0% |
| ! | TGTTTGTCTGAGATTCCTCT+TGG | + | 57556:1066-1085 | MS.gene012045:intron | 40.0% |
| ! | TTCTGGAAATCAGTTGGTCT+TGG | + | 57556:600-619 | MS.gene012045:CDS | 40.0% |
| AGAAATCTGGTAAGGGGAAG+AGG | + | 57556:556-575 | MS.gene012045:CDS | 45.0% | |
| ATCACCTTGCTTCCGTGTTA+AGG | + | 57556:2025-2044 | MS.gene012045:CDS | 45.0% | |
| ATCTAGTGGTGCAGGAAAGA+AGG | + | 57556:2254-2273 | MS.gene012045:CDS | 45.0% | |
| ATGGAAACATTGCCGGTGAA+TGG | - | 57556:1776-1795 | MS.gene012045:intergenic | 45.0% | |
| ATTACCTTCAGTGGCTTCTC+TGG | - | 57556:637-656 | MS.gene012045:intergenic | 45.0% | |
| CATGGTCTCCTTCCTTAACA+CGG | - | 57556:2040-2059 | MS.gene012045:intergenic | 45.0% | |
| CGGTATCCGCTTGAAAGAAT+TGG | + | 57556:1346-1365 | MS.gene012045:intron | 45.0% | |
| CTCTGTCTAGGTATGAGAAG+AGG | + | 57556:1979-1998 | MS.gene012045:intron | 45.0% | |
| CTCTTCTCATACCTAGACAG+AGG | - | 57556:1981-2000 | MS.gene012045:intergenic | 45.0% | |
| GCCACAGTGCTAAGATGAAT+AGG | + | 57556:1822-1841 | MS.gene012045:CDS | 45.0% | |
| GTAATAGAGCCTCACATTCG+AGG | + | 57556:800-819 | MS.gene012045:intron | 45.0% | |
| TTACCTTCAGTGGCTTCTCT+GGG | - | 57556:636-655 | MS.gene012045:intergenic | 45.0% | |
| TTCCTCTTGGCAATATCAGG+TGG | + | 57556:1079-1098 | MS.gene012045:intron | 45.0% | |
| ! | GCAGGAAAGAAGGCTTTTAC+TGG | + | 57556:2264-2283 | MS.gene012045:CDS | 45.0% |
| ! | TCTTGCAAGTGTTGTTGGGA+AGG | + | 57556:1407-1426 | MS.gene012045:intron | 45.0% |
| !! | CTGAGCGTCTAGCTTTGTAT+TGG | + | 57556:1041-1060 | MS.gene012045:intron | 45.0% |
| !! | GACAAGAAGTGTCCATTCAC+CGG | + | 57556:1761-1780 | MS.gene012045:CDS | 45.0% |
| AACCTCACAGTCTTGGAGAG+TGG | - | 57556:2204-2223 | MS.gene012044:intergenic | 50.0% | |
| AAGCAAGGTGATACGTGAGC+GGG | - | 57556:2017-2036 | MS.gene012044:intergenic | 50.0% | |
| AGCCACCTGATATTGCCAAG+AGG | - | 57556:1084-1103 | MS.gene012045:intergenic | 50.0% | |
| ATCCCAGCTGGATCATCTAG+TGG | + | 57556:2240-2259 | MS.gene012045:CDS | 50.0% | |
| CACCACTAGATGATCCAGCT+GGG | - | 57556:2245-2264 | MS.gene012045:intergenic | 50.0% | |
| CACGTTGAACCTCACAGTCT+TGG | - | 57556:2211-2230 | MS.gene012045:intergenic | 50.0% | |
| CCTTCCTTAACACGGAAGCA+AGG | - | 57556:2032-2051 | MS.gene012045:intergenic | 50.0% | |
| CCTTGCTTCCGTGTTAAGGA+AGG | + | 57556:2029-2048 | MS.gene012045:CDS | 50.0% | |
| CTTAGCACTGTGGCAAGTTC+CGG | - | 57556:1816-1835 | MS.gene012045:intergenic | 50.0% | |
| GAAGCAAGGTGATACGTGAG+CGG | - | 57556:2018-2037 | MS.gene012045:intergenic | 50.0% | |
| GTGTTGAAAGTGATCCCAGC+TGG | + | 57556:2228-2247 | MS.gene012045:CDS | 50.0% | |
| GTTATGCTCCCTCGAATGTG+AGG | - | 57556:812-831 | MS.gene012045:intergenic | 50.0% | |
| TACCTTCAGTGGCTTCTCTG+GGG | - | 57556:635-654 | MS.gene012045:intergenic | 50.0% | |
| TCACCGGCAATGTTTCCATC+CGG | + | 57556:1777-1796 | MS.gene012045:CDS | 50.0% | |
| AAGGGGAAGAGGCCTGGAAA+AGG | + | 57556:567-586 | MS.gene012045:CDS | 55.0% | |
| ACCCCGGATGGAAACATTGC+CGG | - | 57556:1783-1802 | MS.gene012045:intergenic | 55.0% | |
| ACCGGCAATGTTTCCATCCG+GGG | + | 57556:1779-1798 | MS.gene012045:CDS | 55.0% | |
| ACCTTCAGTGGCTTCTCTGG+GGG | - | 57556:634-653 | MS.gene012045:intergenic | 55.0% | |
| ATCCGGGGTCGTATCTTAGC+CGG | + | 57556:1794-1813 | MS.gene012045:CDS | 55.0% | |
| CACCGGCAATGTTTCCATCC+GGG | + | 57556:1778-1797 | MS.gene012045:CDS | 55.0% | |
| GCACCACTAGATGATCCAGC+TGG | - | 57556:2246-2265 | MS.gene012045:intergenic | 55.0% | |
| GCTGGATCATCTAGTGGTGC+AGG | + | 57556:2246-2265 | MS.gene012045:CDS | 55.0% | |
| TTCCGGCTAAGATACGACCC+CGG | - | 57556:1799-1818 | MS.gene012045:intergenic | 55.0% | |
| ACCCCCAGAGAAGCCACTGA+AGG | + | 57556:630-649 | MS.gene012045:CDS | 60.0% | |
| GGCCACTCTCCAAGACTGTG+AGG | + | 57556:2199-2218 | MS.gene012045:intron | 60.0% | |
| GGCTAAGATACGACCCCGGA+TGG | - | 57556:1795-1814 | MS.gene012045:intergenic | 60.0% | |
| GGGAAGAGGCCTGGAAAAGG+TGG | + | 57556:570-589 | MS.gene012045:CDS | 60.0% | |
| TCTGGTAAGGGGAAGAGGCC+TGG | + | 57556:561-580 | MS.gene012045:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57556 | gene | 319 | 2293 | 319 | ID=MS.gene012045 |
| 57556 | mRNA | 319 | 2293 | 319 | ID=MS.gene012045.t1;Parent=MS.gene012045 |
| 57556 | exon | 319 | 330 | 319 | ID=MS.gene012045.t1.exon1;Parent=MS.gene012045.t1 |
| 57556 | CDS | 319 | 330 | 319 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| 57556 | exon | 416 | 456 | 416 | ID=MS.gene012045.t1.exon2;Parent=MS.gene012045.t1 |
| 57556 | CDS | 416 | 456 | 416 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| 57556 | exon | 551 | 651 | 551 | ID=MS.gene012045.t1.exon3;Parent=MS.gene012045.t1 |
| 57556 | CDS | 551 | 651 | 551 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| 57556 | exon | 1750 | 1894 | 1750 | ID=MS.gene012045.t1.exon4;Parent=MS.gene012045.t1 |
| 57556 | CDS | 1750 | 1894 | 1750 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| 57556 | exon | 1989 | 2078 | 1989 | ID=MS.gene012045.t1.exon5;Parent=MS.gene012045.t1 |
| 57556 | CDS | 1989 | 2078 | 1989 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| 57556 | exon | 2200 | 2293 | 2200 | ID=MS.gene012045.t1.exon6;Parent=MS.gene012045.t1 |
| 57556 | CDS | 2200 | 2293 | 2200 | ID=cds.MS.gene012045.t1;Parent=MS.gene012045.t1 |
| Gene Sequence |
| Protein sequence |