Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58776.t1 | XP_003609505.1 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 4.80E-86 | 327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58776.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 2.5e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58776.t1 | B7FMB4 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 3.5e-86 | 327.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene58776 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene050290 | MS.gene58776 | 0.923206 | 3.60E-89 | -1.69E-46 |
| MS.gene050574 | MS.gene58776 | 0.846837 | 1.69E-59 | -1.69E-46 |
| MS.gene050916 | MS.gene58776 | 0.889942 | 1.54E-73 | -1.69E-46 |
| MS.gene051330 | MS.gene58776 | 0.852383 | 4.79E-61 | -1.69E-46 |
| MS.gene051746 | MS.gene58776 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene58776 | 0.832785 | 7.75E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene58776 | 0.846064 | 2.75E-59 | -1.69E-46 |
| MS.gene053952 | MS.gene58776 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene58776 | 0.896687 | 2.90E-76 | -1.69E-46 |
| MS.gene056075 | MS.gene58776 | 0.817253 | 3.63E-52 | -1.69E-46 |
| MS.gene056257 | MS.gene58776 | 0.853314 | 2.59E-61 | -1.69E-46 |
| MS.gene056631 | MS.gene58776 | 0.847004 | 1.52E-59 | -1.69E-46 |
| MS.gene056917 | MS.gene58776 | 0.870267 | 1.66E-66 | -1.69E-46 |
| MS.gene057094 | MS.gene58776 | 0.827082 | 1.90E-54 | -1.69E-46 |
| MS.gene057206 | MS.gene58776 | 0.812661 | 3.79E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene58776 | 0.829755 | 4.31E-55 | -1.69E-46 |
| MS.gene058364 | MS.gene58776 | 0.814908 | 1.21E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene58776 | 0.876983 | 9.05E-69 | -1.69E-46 |
| MS.gene060429 | MS.gene58776 | 0.807657 | 4.54E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58776.t1 | MTR_4g116410 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 5.22e-116 | 325 |
| MS.gene58776.t1 | MTR_8g076830 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 1.48e-115 | 323 |
| MS.gene58776.t1 | MTR_1g017780 | 93.789 | 161 | 9 | 1 | 1 | 160 | 1 | 161 | 8.06e-100 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58776.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 3.40e-97 | 277 |
| MS.gene58776.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 2.56e-95 | 273 |
| MS.gene58776.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 1.36e-93 | 268 |
Find 53 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGAGATCATGTTATTAT+TGG | 0.232109 | 8.3:-9525885 | MS.gene58776:CDS |
| ATGGAAACATTGCCAGTAAA+AGG | 0.250015 | 8.3:+9526153 | None:intergenic |
| GGAACCTTCAATGGCTTCTC+TGG | 0.256456 | 8.3:+9527192 | None:intergenic |
| TTCTTTAAATCCGTTGGTCT+TGG | 0.342978 | 8.3:-9527226 | MS.gene58776:CDS |
| AAGGAGATCATGTTATTATT+GGG | 0.351302 | 8.3:-9525884 | MS.gene58776:CDS |
| GCTGGTTCATCCAGTGGTGC+TGG | 0.354296 | 8.3:-9525680 | MS.gene58776:CDS |
| TGAATAGGACTATTATTGTT+AGG | 0.366373 | 8.3:-9526089 | MS.gene58776:CDS |
| GCTGGGAAGAAGGCATTTAC+TGG | 0.369417 | 8.3:-9525662 | MS.gene58776:CDS |
| AGCAACCTAAAGTGTTTCTA+TGG | 0.384927 | 8.3:-9527398 | MS.gene58776:intron |
| ATCACCCTGCTTCCGTGTTA+AGG | 0.389482 | 8.3:-9525907 | MS.gene58776:CDS |
| ACATACCATAGAAACACTTT+AGG | 0.392416 | 8.3:+9527393 | None:intergenic |
| TCCTTCCTTAACACGGAAGC+AGG | 0.400654 | 8.3:+9525902 | None:intergenic |
| TTACTGGCAATGTTTCCATC+CGG | 0.434194 | 8.3:-9526149 | MS.gene58776:CDS |
| TACTGGCAATGTTTCCATCC+GGG | 0.437436 | 8.3:-9526148 | MS.gene58776:CDS |
| GTCACAGTGCTAAGATGAAT+AGG | 0.443080 | 8.3:-9526104 | MS.gene58776:CDS |
| AACCGCTTCTTTAAATCCGT+TGG | 0.460564 | 8.3:-9527232 | MS.gene58776:CDS |
| AGGGCACTTCTTGTCAATGT+AGG | 0.469506 | 8.3:+9526173 | None:intergenic |
| GACGTTGAACCTCACAGTCT+TGG | 0.472416 | 8.3:+9525718 | None:intergenic |
| TGCCTTCTTCCCAGCACCAC+TGG | 0.477160 | 8.3:+9525670 | None:intergenic |
| ATCCAGTGGTGCTGGGAAGA+AGG | 0.479938 | 8.3:-9525672 | MS.gene58776:CDS |
| ATGTTATTATTGGGCAATGC+AGG | 0.485129 | 8.3:-9525875 | MS.gene58776:intron |
| CTGGTTCATCCAGTGGTGCT+GGG | 0.492604 | 8.3:-9525679 | MS.gene58776:CDS |
| GTTAATTACTTGTTCAGCCA+TGG | 0.496408 | 8.3:+9527532 | None:intergenic |
| AAAGGAAAGAGGCCTGGAAA+AGG | 0.502986 | 8.3:-9527259 | MS.gene58776:CDS |
| AGCTAAAATACGGCCCCGGA+TGG | 0.510722 | 8.3:+9526134 | None:intergenic |
| GACAAGTTCCAGCTAAAATA+CGG | 0.511848 | 8.3:+9526124 | None:intergenic |
| TGGAAACATTGCCAGTAAAA+GGG | 0.518269 | 8.3:+9526154 | None:intergenic |
| ACTCCCAGAGAAGCCATTGA+AGG | 0.523893 | 8.3:-9527196 | MS.gene58776:intron |
| TTGGTAGCTCAAAGAAGAGT+GGG | 0.529884 | 8.3:-9527282 | MS.gene58776:intron |
| GCACCACTGGATGAACCAGC+TGG | 0.536114 | 8.3:+9525683 | None:intergenic |
| AGTGGGAAAGGAAAGAGGCC+TGG | 0.536739 | 8.3:-9527265 | MS.gene58776:CDS |
| CCCTGCTTCCGTGTTAAGGA+AGG | 0.558291 | 8.3:-9525903 | MS.gene58776:CDS |
| GAACCTTCAATGGCTTCTCT+GGG | 0.562688 | 8.3:+9527193 | None:intergenic |
| GTCTTGAAAGTGATCCCAGC+TGG | 0.565686 | 8.3:-9525698 | MS.gene58776:CDS |
| ATCCCAGCTGGTTCATCCAG+TGG | 0.566568 | 8.3:-9525686 | MS.gene58776:CDS |
| AGAAGAGTGGGAAAGGAAAG+AGG | 0.567345 | 8.3:-9527270 | MS.gene58776:CDS |
| ACTGGCAATGTTTCCATCCG+GGG | 0.570865 | 8.3:-9526147 | MS.gene58776:CDS |
| AAGCAGGGTGATACATGAGC+AGG | 0.574164 | 8.3:+9525918 | None:intergenic |
| GGAAAGAGGCCTGGAAAAGG+TGG | 0.575072 | 8.3:-9527256 | MS.gene58776:CDS |
| TTGTGTGTTACAGACTGAGA+AGG | 0.577565 | 8.3:-9527430 | MS.gene58776:intron |
| TTCCAGCTAAAATACGGCCC+CGG | 0.583185 | 8.3:+9526130 | None:intergenic |
| ATAGGACTATTATTGTTAGG+AGG | 0.587464 | 8.3:-9526086 | MS.gene58776:CDS |
| AGCTCAAAGAAGAGTGGGAA+AGG | 0.587623 | 8.3:-9527277 | MS.gene58776:CDS |
| GACCAACGGATTTAAAGAAG+CGG | 0.587920 | 8.3:+9527230 | None:intergenic |
| TTTGGTAGCTCAAAGAAGAG+TGG | 0.594148 | 8.3:-9527283 | MS.gene58776:intron |
| CTCTATTTAGATATGAGAAG+AGG | 0.599289 | 8.3:-9525953 | MS.gene58776:intron |
| AACCTCACAGTCTTGGAGAG+AGG | 0.610094 | 8.3:+9525725 | None:intergenic |
| CATGATCTCCTTCCTTAACA+CGG | 0.626861 | 8.3:+9525895 | None:intergenic |
| CACCACTGGATGAACCAGCT+GGG | 0.630037 | 8.3:+9525684 | None:intergenic |
| CCTTCCTTAACACGGAAGCA+GGG | 0.633141 | 8.3:+9525903 | None:intergenic |
| ACTTTATCAAGAAGTATCAG+AGG | 0.634593 | 8.3:-9526053 | MS.gene58776:intron |
| GGCCTCTCTCCAAGACTGTG+AGG | 0.650917 | 8.3:-9525727 | MS.gene58776:CDS |
| AGTCTTAAATCCAAGACCAA+CGG | 0.666807 | 8.3:+9527216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGGATAAATCATTT+TGG | + | chr8.3:9525832-9525851 | None:intergenic | 15.0% |
| !!! | AAAAAAGGATAAATCATTTT+GGG | + | chr8.3:9525831-9525850 | None:intergenic | 15.0% |
| !!! | AATTTATTGTGATATTTTAC+TGG | - | chr8.3:9526036-9526055 | MS.gene58776:intron | 15.0% |
| !! | ACATCATATATTAAAGACTA+TGG | + | chr8.3:9526406-9526425 | None:intergenic | 20.0% |
| !! | ATAGTCTTTAATATATGATG+TGG | - | chr8.3:9526405-9526424 | MS.gene58776:intron | 20.0% |
| !!! | AATACAAAATGGATTTCAAA+AGG | + | chr8.3:9526688-9526707 | None:intergenic | 20.0% |
| !!! | ATAATTTAAGACACAGAAAA+AGG | + | chr8.3:9527355-9527374 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTTGATTGAATT+TGG | - | chr8.3:9525884-9525903 | MS.gene58776:CDS | 20.0% |
| !!! | TGTGCAATAAATGTTTTAAT+TGG | - | chr8.3:9526228-9526247 | MS.gene58776:intron | 20.0% |
| ! | AAAGAAACAACAAAGTCATT+TGG | + | chr8.3:9526862-9526881 | None:intergenic | 25.0% |
| ! | AAGGAGATCATGTTATTATT+GGG | - | chr8.3:9527301-9527320 | MS.gene58776:intron | 25.0% |
| ! | ACATCAATGCATTTACATTT+CGG | + | chr8.3:9526579-9526598 | None:intergenic | 25.0% |
| ! | TGAATAGGACTATTATTGTT+AGG | - | chr8.3:9527096-9527115 | MS.gene58776:intron | 25.0% |
| !! | TCACAAATAGTCAATTTTGT+AGG | - | chr8.3:9526095-9526114 | MS.gene58776:CDS | 25.0% |
| !!! | GCAATAAATGTTTTAATTGG+TGG | - | chr8.3:9526231-9526250 | MS.gene58776:intron | 25.0% |
| AATATATGATGTGGATCATG+TGG | - | chr8.3:9526414-9526433 | MS.gene58776:intron | 30.0% | |
| ACAACAAAGTCATTTGGATT+TGG | + | chr8.3:9526856-9526875 | None:intergenic | 30.0% | |
| ACAATAAATTCACAATGCAG+AGG | + | chr8.3:9526026-9526045 | None:intergenic | 30.0% | |
| ACATACCATAGAAACACTTT+AGG | + | chr8.3:9525795-9525814 | None:intergenic | 30.0% | |
| ATAGGACTATTATTGTTAGG+AGG | - | chr8.3:9527099-9527118 | MS.gene58776:intron | 30.0% | |
| CAAATAAAAACAGGACATCA+AGG | + | chr8.3:9527164-9527183 | None:intergenic | 30.0% | |
| CAACAAATCGAAGGAAAAAA+AGG | + | chr8.3:9525846-9525865 | None:intergenic | 30.0% | |
| CAGAAATAAACATGCACATT+CGG | + | chr8.3:9526885-9526904 | None:intergenic | 30.0% | |
| CAGGAAGATTAATCTTTGAT+AGG | + | chr8.3:9526359-9526378 | None:intergenic | 30.0% | |
| CATGTGGCTGAATTTATTAT+TGG | - | chr8.3:9526430-9526449 | MS.gene58776:intron | 30.0% | |
| CATTGGACTCTAATACAAAA+TGG | + | chr8.3:9526699-9526718 | None:intergenic | 30.0% | |
| CTCTATTTAGATATGAGAAG+AGG | - | chr8.3:9527232-9527251 | MS.gene58776:CDS | 30.0% | |
| GAAGATTAATCTTTGATAGG+TGG | + | chr8.3:9526356-9526375 | None:intergenic | 30.0% | |
| GAAGGAGATCATGTTATTAT+TGG | - | chr8.3:9527300-9527319 | MS.gene58776:intron | 30.0% | |
| GAATTTCAACAAAATCACAG+TGG | + | chr8.3:9526279-9526298 | None:intergenic | 30.0% | |
| GATATAGATGTATGTCTGAT+TGG | - | chr8.3:9527413-9527432 | MS.gene58776:CDS | 30.0% | |
| TAAGAACAACCGAAACAAAA+GGG | + | chr8.3:9525694-9525713 | None:intergenic | 30.0% | |
| TCAAAATCACAACAAATCGA+AGG | + | chr8.3:9525855-9525874 | None:intergenic | 30.0% | |
| ! | CATTTTGTATTAGAGTCCAA+TGG | - | chr8.3:9526697-9526716 | MS.gene58776:intron | 30.0% |
| ! | TTGTGATATTTTACTGGATC+TGG | - | chr8.3:9526042-9526061 | MS.gene58776:intron | 30.0% |
| !! | ACTTTATCAAGAAGTATCAG+AGG | - | chr8.3:9527132-9527151 | MS.gene58776:intron | 30.0% |
| !! | AGCATATTATTTTGCTAGCT+AGG | + | chr8.3:9526652-9526671 | None:intergenic | 30.0% |
| !! | TTCCTTTTTCCCTTTTGTTT+CGG | - | chr8.3:9525682-9525701 | MS.gene58776:CDS | 30.0% |
| !! | TTTATTTGTGCCATTTCATC+AGG | - | chr8.3:9527437-9527456 | MS.gene58776:intron | 30.0% |
| AAACACATGATACAAATCCC+TGG | + | chr8.3:9526494-9526513 | None:intergenic | 35.0% | |
| AACCGAAACAAAAGGGAAAA+AGG | + | chr8.3:9525687-9525706 | None:intergenic | 35.0% | |
| AGTCTTAAATCCAAGACCAA+CGG | + | chr8.3:9525972-9525991 | None:intergenic | 35.0% | |
| ATGGAAACATTGCCAGTAAA+AGG | + | chr8.3:9527035-9527054 | None:intergenic | 35.0% | |
| ATGTTATTATTGGGCAATGC+AGG | - | chr8.3:9527310-9527329 | MS.gene58776:intron | 35.0% | |
| CAAAATCAAGAGAGCCATTA+TGG | + | chr8.3:9526324-9526343 | None:intergenic | 35.0% | |
| CTAAGAACAACCGAAACAAA+AGG | + | chr8.3:9525695-9525714 | None:intergenic | 35.0% | |
| CTCCAAGTGCAAATAAAAAC+AGG | + | chr8.3:9527173-9527192 | None:intergenic | 35.0% | |
| GACAACAAGTGTTATGACTA+GGG | + | chr8.3:9526733-9526752 | None:intergenic | 35.0% | |
| GACAAGTTCCAGCTAAAATA+CGG | + | chr8.3:9527064-9527083 | None:intergenic | 35.0% | |
| GGTAAAAAAGGAACCTTCAA+TGG | + | chr8.3:9526005-9526024 | None:intergenic | 35.0% | |
| TCACAATGCAGAGGTAAAAA+AGG | + | chr8.3:9526017-9526036 | None:intergenic | 35.0% | |
| TGACAACAAGTGTTATGACT+AGG | + | chr8.3:9526734-9526753 | None:intergenic | 35.0% | |
| TGGAAACATTGCCAGTAAAA+GGG | + | chr8.3:9527034-9527053 | None:intergenic | 35.0% | |
| TTCTGTCACGCAATCATTAT+TGG | - | chr8.3:9526598-9526617 | MS.gene58776:intron | 35.0% | |
| ! | AGCAACCTAAAGTGTTTCTA+TGG | - | chr8.3:9525787-9525806 | MS.gene58776:intron | 35.0% |
| ! | CCAATCCAACTTGAAAGTAT+AGG | - | chr8.3:9526542-9526561 | MS.gene58776:intron | 35.0% |
| ! | GTAGACCTATACTTTCAAGT+TGG | + | chr8.3:9526550-9526569 | None:intergenic | 35.0% |
| ! | TTCTTTAAATCCGTTGGTCT+TGG | - | chr8.3:9525959-9525978 | MS.gene58776:intron | 35.0% |
| !! | CCTATACTTTCAAGTTGGAT+TGG | + | chr8.3:9526545-9526564 | None:intergenic | 35.0% |
| !!! | AAGCTTTTGATTTCGAAACC+AGG | - | chr8.3:9526473-9526492 | MS.gene58776:intron | 35.0% |
| !!! | AGCTTTTGATTTCGAAACCA+GGG | - | chr8.3:9526474-9526493 | MS.gene58776:intron | 35.0% |
| !!! | GTCCTGTTTTTATTTGCACT+TGG | - | chr8.3:9527168-9527187 | MS.gene58776:intron | 35.0% |
| AACCGCTTCTTTAAATCCGT+TGG | - | chr8.3:9525953-9525972 | MS.gene58776:intron | 40.0% | |
| ACACGATCAATGACAACAAG+TGG | + | chr8.3:9526744-9526763 | None:intergenic | 40.0% | |
| CATGATCTCCTTCCTTAACA+CGG | + | chr8.3:9527293-9527312 | None:intergenic | 40.0% | |
| CTAGGGATATCGAAAACCAT+TGG | + | chr8.3:9526716-9526735 | None:intergenic | 40.0% | |
| GCCATTATGGCAAAACTCAA+AGG | + | chr8.3:9526311-9526330 | None:intergenic | 40.0% | |
| GTCACAGTGCTAAGATGAAT+AGG | - | chr8.3:9527081-9527100 | MS.gene58776:intron | 40.0% | |
| TGTGTGTGTGTGTGTGTAAA+CGG | - | chr8.3:9527384-9527403 | MS.gene58776:intron | 40.0% | |
| TGTTGTCATTGATCGTGTCA+TGG | - | chr8.3:9526746-9526765 | MS.gene58776:intron | 40.0% | |
| TTACTGGCAATGTTTCCATC+CGG | - | chr8.3:9527036-9527055 | MS.gene58776:intron | 40.0% | |
| TTGTGTGTTACAGACTGAGA+AGG | - | chr8.3:9525755-9525774 | MS.gene58776:intron | 40.0% | |
| ! | GACCAACGGATTTAAAGAAG+CGG | + | chr8.3:9525958-9525977 | None:intergenic | 40.0% |
| ! | TTGGTAGCTCAAAGAAGAGT+GGG | - | chr8.3:9525903-9525922 | MS.gene58776:CDS | 40.0% |
| ! | TTTGGTAGCTCAAAGAAGAG+TGG | - | chr8.3:9525902-9525921 | MS.gene58776:CDS | 40.0% |
| !! | GCCTTTGAGTTTTGCCATAA+TGG | - | chr8.3:9526307-9526326 | MS.gene58776:intron | 40.0% |
| AAAGGAAAGAGGCCTGGAAA+AGG | - | chr8.3:9525926-9525945 | MS.gene58776:CDS | 45.0% | |
| AGAAGAGTGGGAAAGGAAAG+AGG | - | chr8.3:9525915-9525934 | MS.gene58776:CDS | 45.0% | |
| AGCTCAAAGAAGAGTGGGAA+AGG | - | chr8.3:9525908-9525927 | MS.gene58776:CDS | 45.0% | |
| CAATCGCAGGTTCATCATTC+AGG | + | chr8.3:9526378-9526397 | None:intergenic | 45.0% | |
| CAATGCAGGTGAGACTCAAT+AGG | - | chr8.3:9527324-9527343 | MS.gene58776:intron | 45.0% | |
| GAACCTTCAATGGCTTCTCT+GGG | + | chr8.3:9525995-9526014 | None:intergenic | 45.0% | |
| GACTATGGATCTTCAATCGC+AGG | + | chr8.3:9526391-9526410 | None:intergenic | 45.0% | |
| GTGTCATGGCATCATCTACT+TGG | - | chr8.3:9526760-9526779 | MS.gene58776:intron | 45.0% | |
| TACTGGCAATGTTTCCATCC+GGG | - | chr8.3:9527037-9527056 | MS.gene58776:intron | 45.0% | |
| ! | AGGGCACTTCTTGTCAATGT+AGG | + | chr8.3:9527015-9527034 | None:intergenic | 45.0% |
| !!! | GACAAGAAGTGCCCTTTTAC+TGG | - | chr8.3:9527020-9527039 | MS.gene58776:intron | 45.0% |
| !! | TAAAATAAAAAAATCATAAA+AGG | + | chr8.3:9526982-9527001 | None:intergenic | 5.0% |
| !!! | GATTTTTTTATTTTAAAAAT+AGG | - | chr8.3:9526987-9527006 | MS.gene58776:intron | 5.0% |
| AACCTCACAGTCTTGGAGAG+AGG | + | chr8.3:9527463-9527482 | None:intergenic | 50.0% | |
| AAGCAGGGTGATACATGAGC+AGG | + | chr8.3:9527270-9527289 | None:intergenic | 50.0% | |
| ACTCCCAGAGAAGCCATTGA+AGG | - | chr8.3:9525989-9526008 | MS.gene58776:intron | 50.0% | |
| ACTGGCAATGTTTCCATCCG+GGG | - | chr8.3:9527038-9527057 | MS.gene58776:intron | 50.0% | |
| ATCACCCTGCTTCCGTGTTA+AGG | - | chr8.3:9527278-9527297 | MS.gene58776:CDS | 50.0% | |
| CCTTCCTTAACACGGAAGCA+GGG | + | chr8.3:9527285-9527304 | None:intergenic | 50.0% | |
| GACGTTGAACCTCACAGTCT+TGG | + | chr8.3:9527470-9527489 | None:intergenic | 50.0% | |
| GGAACCTTCAATGGCTTCTC+TGG | + | chr8.3:9525996-9526015 | None:intergenic | 50.0% | |
| GTCTTGAAAGTGATCCCAGC+TGG | - | chr8.3:9527487-9527506 | MS.gene58776:intron | 50.0% | |
| TCCTTCCTTAACACGGAAGC+AGG | + | chr8.3:9527286-9527305 | None:intergenic | 50.0% | |
| TGCAGGTGAGACTCAATAGG+AGG | - | chr8.3:9527327-9527346 | MS.gene58776:intron | 50.0% | |
| TGGAGAGAGGCCTGATGAAA+TGG | + | chr8.3:9527450-9527469 | None:intergenic | 50.0% | |
| TTCCAGCTAAAATACGGCCC+CGG | + | chr8.3:9527058-9527077 | None:intergenic | 50.0% | |
| ! | AAGCGGTTTCCACCTTTTCC+AGG | + | chr8.3:9525941-9525960 | None:intergenic | 50.0% |
| !! | GCTGGGAAGAAGGCATTTAC+TGG | - | chr8.3:9527523-9527542 | MS.gene58776:intron | 50.0% |
| AGCTAAAATACGGCCCCGGA+TGG | + | chr8.3:9527054-9527073 | None:intergenic | 55.0% | |
| AGTGGGAAAGGAAAGAGGCC+TGG | - | chr8.3:9525920-9525939 | MS.gene58776:CDS | 55.0% | |
| CACCACTGGATGAACCAGCT+GGG | + | chr8.3:9527504-9527523 | None:intergenic | 55.0% | |
| CCCTGCTTCCGTGTTAAGGA+AGG | - | chr8.3:9527282-9527301 | MS.gene58776:intron | 55.0% | |
| CTGGTTCATCCAGTGGTGCT+GGG | - | chr8.3:9527506-9527525 | MS.gene58776:intron | 55.0% | |
| GGAAAGAGGCCTGGAAAAGG+TGG | - | chr8.3:9525929-9525948 | MS.gene58776:CDS | 55.0% | |
| ! | ATCCAGTGGTGCTGGGAAGA+AGG | - | chr8.3:9527513-9527532 | MS.gene58776:intron | 55.0% |
| ! | ATCCCAGCTGGTTCATCCAG+TGG | - | chr8.3:9527499-9527518 | MS.gene58776:intron | 55.0% |
| !!! | ATCCGGGGCCGTATTTTAGC+TGG | - | chr8.3:9527053-9527072 | MS.gene58776:intron | 55.0% |
| GCACCACTGGATGAACCAGC+TGG | + | chr8.3:9527505-9527524 | None:intergenic | 60.0% | |
| GGCCTCTCTCCAAGACTGTG+AGG | - | chr8.3:9527458-9527477 | MS.gene58776:intron | 60.0% | |
| TGCCTTCTTCCCAGCACCAC+TGG | + | chr8.3:9527518-9527537 | None:intergenic | 60.0% | |
| ! | GCTGGTTCATCCAGTGGTGC+TGG | - | chr8.3:9527505-9527524 | MS.gene58776:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 9525655 | 9527552 | 9525655 | ID=MS.gene58776 |
| chr8.3 | mRNA | 9525655 | 9527552 | 9525655 | ID=MS.gene58776.t1;Parent=MS.gene58776 |
| chr8.3 | exon | 9527541 | 9527552 | 9527541 | ID=MS.gene58776.t1.exon1;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9527541 | 9527552 | 9527541 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| chr8.3 | exon | 9527399 | 9527439 | 9527399 | ID=MS.gene58776.t1.exon2;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9527399 | 9527439 | 9527399 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| chr8.3 | exon | 9527197 | 9527297 | 9527197 | ID=MS.gene58776.t1.exon3;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9527197 | 9527297 | 9527197 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| chr8.3 | exon | 9526054 | 9526198 | 9526054 | ID=MS.gene58776.t1.exon4;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9526054 | 9526198 | 9526054 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| chr8.3 | exon | 9525876 | 9525965 | 9525876 | ID=MS.gene58776.t1.exon5;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9525876 | 9525965 | 9525876 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| chr8.3 | exon | 9525655 | 9525748 | 9525655 | ID=MS.gene58776.t1.exon6;Parent=MS.gene58776.t1 |
| chr8.3 | CDS | 9525655 | 9525748 | 9525655 | ID=cds.MS.gene58776.t1;Parent=MS.gene58776.t1 |
| Gene Sequence |
| Protein sequence |
