Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58215.t1 | XP_003609505.1 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 4.80E-86 | 327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58215.t1 | P17093 | 95.0 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 2.5e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58215.t1 | B7FMB4 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 3.5e-86 | 327.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene58215 | 0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene050290 | MS.gene58215 | 0.927275 | 1.47E-91 | -1.69E-46 |
| MS.gene050574 | MS.gene58215 | 0.841349 | 5.02E-58 | -1.69E-46 |
| MS.gene050916 | MS.gene58215 | 0.893712 | 4.87E-75 | -1.69E-46 |
| MS.gene051330 | MS.gene58215 | 0.856247 | 3.66E-62 | -1.69E-46 |
| MS.gene051746 | MS.gene58215 | 0.807223 | 5.62E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene58215 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene58215 | 0.83958 | 1.46E-57 | -1.69E-46 |
| MS.gene052947 | MS.gene58215 | 0.849411 | 3.29E-60 | -1.69E-46 |
| MS.gene053952 | MS.gene58215 | 0.80943 | 1.90E-50 | -1.69E-46 |
| MS.gene054937 | MS.gene58215 | 0.90156 | 2.37E-78 | -1.69E-46 |
| MS.gene056075 | MS.gene58215 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene056257 | MS.gene58215 | 0.850883 | 1.27E-60 | -1.69E-46 |
| MS.gene056631 | MS.gene58215 | 0.851119 | 1.09E-60 | -1.69E-46 |
| MS.gene056917 | MS.gene58215 | 0.864892 | 8.77E-65 | -1.69E-46 |
| MS.gene057094 | MS.gene58215 | 0.835928 | 1.26E-56 | -1.69E-46 |
| MS.gene057206 | MS.gene58215 | 0.823569 | 1.29E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene58215 | 0.827541 | 1.48E-54 | -1.69E-46 |
| MS.gene058364 | MS.gene58215 | 0.820644 | 6.15E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene58215 | 0.880774 | 4.16E-70 | -1.69E-46 |
| MS.gene060429 | MS.gene58215 | 0.804546 | 2.05E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58215.t1 | MTR_4g116410 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 5.22e-116 | 325 |
| MS.gene58215.t1 | MTR_8g076830 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 1.48e-115 | 323 |
| MS.gene58215.t1 | MTR_1g017780 | 93.789 | 161 | 9 | 1 | 1 | 160 | 1 | 161 | 8.06e-100 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58215.t1 | AT3G48930 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 3.40e-97 | 277 |
| MS.gene58215.t1 | AT5G23740 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 2.56e-95 | 273 |
| MS.gene58215.t1 | AT4G30800 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 1.36e-93 | 268 |
Find 53 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGAGATCATGTTATTAT+TGG | 0.232109 | 8.4:-13740421 | MS.gene58215:CDS |
| ATGGAAACATTGCCAGTAAA+AGG | 0.250015 | 8.4:+13740689 | None:intergenic |
| GGAACCTTCAATGGCTTCTC+TGG | 0.256456 | 8.4:+13741747 | None:intergenic |
| TTCTTTAAATCCGTTGGTCT+TGG | 0.342978 | 8.4:-13741781 | MS.gene58215:CDS |
| AAGGAGATCATGTTATTATT+GGG | 0.351302 | 8.4:-13740420 | MS.gene58215:CDS |
| GCTGGTTCATCCAGTGGTGC+TGG | 0.354296 | 8.4:-13740210 | MS.gene58215:CDS |
| TGAATAGGACTATTATTGTT+AGG | 0.366373 | 8.4:-13740625 | MS.gene58215:CDS |
| GCTGGGAAGAAGGCATTTAC+TGG | 0.369417 | 8.4:-13740192 | MS.gene58215:CDS |
| AGCAACCTAAAGTGTTTCTA+TGG | 0.384927 | 8.4:-13741953 | MS.gene58215:intron |
| ATCACCCTGCTTCCGTGTTA+AGG | 0.389482 | 8.4:-13740443 | MS.gene58215:CDS |
| ACATACCATAGAAACACTTT+AGG | 0.392416 | 8.4:+13741948 | None:intergenic |
| TCCTTCCTTAACACGGAAGC+AGG | 0.400654 | 8.4:+13740438 | None:intergenic |
| TTACTGGCAATGTTTCCATC+CGG | 0.434194 | 8.4:-13740685 | MS.gene58215:CDS |
| TACTGGCAATGTTTCCATCC+GGG | 0.437436 | 8.4:-13740684 | MS.gene58215:CDS |
| GTCACAGTGCTAAGATGAAT+AGG | 0.443080 | 8.4:-13740640 | MS.gene58215:CDS |
| AACCGCTTCTTTAAATCCGT+TGG | 0.460564 | 8.4:-13741787 | MS.gene58215:CDS |
| AGGGCACTTCTTGTCAATGT+AGG | 0.469506 | 8.4:+13740709 | None:intergenic |
| GACGTTGAACCTCACAGTCT+TGG | 0.472416 | 8.4:+13740248 | None:intergenic |
| TGCCTTCTTCCCAGCACCAC+TGG | 0.477160 | 8.4:+13740200 | None:intergenic |
| ATCCAGTGGTGCTGGGAAGA+AGG | 0.479938 | 8.4:-13740202 | MS.gene58215:CDS |
| ATGTTATTATTGGGCAATGC+AGG | 0.485129 | 8.4:-13740411 | MS.gene58215:intron |
| CTGGTTCATCCAGTGGTGCT+GGG | 0.492604 | 8.4:-13740209 | MS.gene58215:CDS |
| GTTAATTACTTGTTCAGCCA+TGG | 0.496408 | 8.4:+13742087 | None:intergenic |
| AAAGGAAAGAGGCCTGGAAA+AGG | 0.502986 | 8.4:-13741814 | MS.gene58215:CDS |
| AGCTAAAATACGGCCCCGGA+TGG | 0.510722 | 8.4:+13740670 | None:intergenic |
| GACAAGTTCCAGCTAAAATA+CGG | 0.511848 | 8.4:+13740660 | None:intergenic |
| TGGAAACATTGCCAGTAAAA+GGG | 0.518269 | 8.4:+13740690 | None:intergenic |
| ACTCCCAGAGAAGCCATTGA+AGG | 0.523893 | 8.4:-13741751 | MS.gene58215:intron |
| TTGGTAGCTCAAAGAAGAGT+GGG | 0.529884 | 8.4:-13741837 | MS.gene58215:intron |
| GCACCACTGGATGAACCAGC+TGG | 0.536114 | 8.4:+13740213 | None:intergenic |
| AGTGGGAAAGGAAAGAGGCC+TGG | 0.536739 | 8.4:-13741820 | MS.gene58215:CDS |
| CCCTGCTTCCGTGTTAAGGA+AGG | 0.558291 | 8.4:-13740439 | MS.gene58215:CDS |
| GAACCTTCAATGGCTTCTCT+GGG | 0.562688 | 8.4:+13741748 | None:intergenic |
| GTCTTGAAAGTGATCCCAGC+TGG | 0.565686 | 8.4:-13740228 | MS.gene58215:CDS |
| ATCCCAGCTGGTTCATCCAG+TGG | 0.566568 | 8.4:-13740216 | MS.gene58215:CDS |
| AGAAGAGTGGGAAAGGAAAG+AGG | 0.567345 | 8.4:-13741825 | MS.gene58215:CDS |
| ACTGGCAATGTTTCCATCCG+GGG | 0.570865 | 8.4:-13740683 | MS.gene58215:CDS |
| AAGCAGGGTGATACATGAGC+AGG | 0.574164 | 8.4:+13740454 | None:intergenic |
| GGAAAGAGGCCTGGAAAAGG+TGG | 0.575072 | 8.4:-13741811 | MS.gene58215:CDS |
| TTGTGTGTTACAGACTGAGA+AGG | 0.577565 | 8.4:-13741985 | MS.gene58215:intron |
| TTCCAGCTAAAATACGGCCC+CGG | 0.583185 | 8.4:+13740666 | None:intergenic |
| ATAGGACTATTATTGTTAGG+AGG | 0.587464 | 8.4:-13740622 | MS.gene58215:CDS |
| AGCTCAAAGAAGAGTGGGAA+AGG | 0.587623 | 8.4:-13741832 | MS.gene58215:CDS |
| GACCAACGGATTTAAAGAAG+CGG | 0.587920 | 8.4:+13741785 | None:intergenic |
| TTTGGTAGCTCAAAGAAGAG+TGG | 0.594148 | 8.4:-13741838 | MS.gene58215:intron |
| CTCTATTTAGATATGAGAAG+AGG | 0.599289 | 8.4:-13740489 | MS.gene58215:intron |
| AACCTCACAGTCTTGGAGAG+AGG | 0.610094 | 8.4:+13740255 | None:intergenic |
| CATGATCTCCTTCCTTAACA+CGG | 0.626861 | 8.4:+13740431 | None:intergenic |
| CACCACTGGATGAACCAGCT+GGG | 0.630037 | 8.4:+13740214 | None:intergenic |
| CCTTCCTTAACACGGAAGCA+GGG | 0.633141 | 8.4:+13740439 | None:intergenic |
| ACTTTATCAAGAAGTATCAG+AGG | 0.634593 | 8.4:-13740589 | MS.gene58215:intron |
| GGCCTCTCTCCAAGACTGTG+AGG | 0.650917 | 8.4:-13740257 | MS.gene58215:CDS |
| AGTCTTAAATCCAAGACCAA+CGG | 0.666807 | 8.4:+13741771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATTTTAAAAAT+AGG | - | chr8.4:13741536-13741555 | MS.gene58215:intron | 0.0% |
| !!! | AATTTATTGTGATATTTTAT+TGG | - | chr8.4:13740566-13740585 | MS.gene58215:intron | 10.0% |
| !!! | AAAAAAAGGATAAATCATTT+TGG | + | chr8.4:13740362-13740381 | None:intergenic | 15.0% |
| !!! | AAAAAAGGATAAATCATTTT+GGG | + | chr8.4:13740361-13740380 | None:intergenic | 15.0% |
| !! | ACATCATATATTAAAGACTA+TGG | + | chr8.4:13740939-13740958 | None:intergenic | 20.0% |
| !!! | ATAATTTAAGACACAGAAAA+AGG | + | chr8.4:13741904-13741923 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTTGATTGAATT+TGG | - | chr8.4:13740414-13740433 | MS.gene58215:CDS | 20.0% |
| !!! | TGTGCAATAAATGTTTTAAT+TGG | - | chr8.4:13740758-13740777 | MS.gene58215:intron | 20.0% |
| ! | AAAGAAACAACAAAGTCATT+TGG | + | chr8.4:13741470-13741489 | None:intergenic | 25.0% |
| ! | AAAGAAACAACAATGTCATT+TGG | + | chr8.4:13741410-13741429 | None:intergenic | 25.0% |
| ! | AAGGAGATCATGTTATTATT+GGG | - | chr8.4:13741850-13741869 | MS.gene58215:intron | 25.0% |
| ! | ACATCAATGCATTTACATTT+CGG | + | chr8.4:13741127-13741146 | None:intergenic | 25.0% |
| ! | TGAATAGGACTATTATTGTT+AGG | - | chr8.4:13741645-13741664 | MS.gene58215:intron | 25.0% |
| !! | AATACAAAATGGATTTCGAA+AGG | + | chr8.4:13741236-13741255 | None:intergenic | 25.0% |
| !! | TCACAAATAGTCAATTTTGT+AGG | - | chr8.4:13740625-13740644 | MS.gene58215:CDS | 25.0% |
| !! | TTGTGATATTTTATTGGATC+TGG | - | chr8.4:13740572-13740591 | MS.gene58215:intron | 25.0% |
| !!! | TGATGTTTTAATGTATGATG+TGG | - | chr8.4:13740953-13740972 | MS.gene58215:intron | 25.0% |
| ACAATAAATTCACAATGCAG+AGG | + | chr8.4:13740556-13740575 | None:intergenic | 30.0% | |
| ACATACCATAGAAACACTTT+AGG | + | chr8.4:13740325-13740344 | None:intergenic | 30.0% | |
| ATAGGACTATTATTGTTAGG+AGG | - | chr8.4:13741648-13741667 | MS.gene58215:intron | 30.0% | |
| CAAATAAAAACAGGACATCA+AGG | + | chr8.4:13741713-13741732 | None:intergenic | 30.0% | |
| CAACAAATCGAAGGAAAAAA+AGG | + | chr8.4:13740376-13740395 | None:intergenic | 30.0% | |
| CAGAAATAAACATGCACATT+CGG | + | chr8.4:13741433-13741452 | None:intergenic | 30.0% | |
| CAGGAAGATTAATCTTTGAT+AGG | + | chr8.4:13740892-13740911 | None:intergenic | 30.0% | |
| CATGTGGCTGAATTTATTAT+TGG | - | chr8.4:13740978-13740997 | MS.gene58215:intron | 30.0% | |
| CATTGGACTCTAATACAAAA+TGG | + | chr8.4:13741247-13741266 | None:intergenic | 30.0% | |
| CTCTATTTAGATATGAGAAG+AGG | - | chr8.4:13741781-13741800 | MS.gene58215:CDS | 30.0% | |
| GAAGATTAATCTTTGATAGG+TGG | + | chr8.4:13740889-13740908 | None:intergenic | 30.0% | |
| GAAGGAGATCATGTTATTAT+TGG | - | chr8.4:13741849-13741868 | MS.gene58215:intron | 30.0% | |
| GAATTTCAACAAAATCACAG+TGG | + | chr8.4:13740811-13740830 | None:intergenic | 30.0% | |
| GATATAGATGTATGTCTGAT+TGG | - | chr8.4:13741968-13741987 | MS.gene58215:CDS | 30.0% | |
| TAAGAACAACCGAAACAAAA+GGG | + | chr8.4:13740224-13740243 | None:intergenic | 30.0% | |
| TCAAAATCACAACAAATCGA+AGG | + | chr8.4:13740385-13740404 | None:intergenic | 30.0% | |
| TTCTGTCATGCAATCATTAT+TGG | - | chr8.4:13741146-13741165 | MS.gene58215:intron | 30.0% | |
| ! | ACAACAATGTCATTTGGATT+TGG | + | chr8.4:13741404-13741423 | None:intergenic | 30.0% |
| ! | CATTTTGTATTAGAGTCCAA+TGG | - | chr8.4:13741245-13741264 | MS.gene58215:intron | 30.0% |
| !! | AAAGTATAGCCTTTGAGTTT+TGG | - | chr8.4:13740831-13740850 | MS.gene58215:intron | 30.0% |
| !! | ACTTTATCAAGAAGTATCAG+AGG | - | chr8.4:13741681-13741700 | MS.gene58215:intron | 30.0% |
| !! | AGCATATTATTTTGCTAGCT+AGG | + | chr8.4:13741200-13741219 | None:intergenic | 30.0% |
| !! | TTCCTTTTTCCCTTTTGTTT+CGG | - | chr8.4:13740212-13740231 | MS.gene58215:CDS | 30.0% |
| !! | TTTATTTGTGCCATTTCATC+AGG | - | chr8.4:13741992-13742011 | MS.gene58215:intron | 30.0% |
| AAACACATGATACAAATCCC+TGG | + | chr8.4:13741042-13741061 | None:intergenic | 35.0% | |
| AACCGAAACAAAAGGGAAAA+AGG | + | chr8.4:13740217-13740236 | None:intergenic | 35.0% | |
| AATGTATGATGTGGATCATG+TGG | - | chr8.4:13740962-13740981 | MS.gene58215:intron | 35.0% | |
| AGTCTTAAATCCAAGACCAA+CGG | + | chr8.4:13740502-13740521 | None:intergenic | 35.0% | |
| ATGGAAACATTGCCAGTAAA+AGG | + | chr8.4:13741584-13741603 | None:intergenic | 35.0% | |
| ATGTTATTATTGGGCAATGC+AGG | - | chr8.4:13741859-13741878 | MS.gene58215:intron | 35.0% | |
| CTAAGAACAACCGAAACAAA+AGG | + | chr8.4:13740225-13740244 | None:intergenic | 35.0% | |
| CTCCAAGTGCAAATAAAAAC+AGG | + | chr8.4:13741722-13741741 | None:intergenic | 35.0% | |
| GACAACAAGTGTTATGACTA+GGG | + | chr8.4:13741281-13741300 | None:intergenic | 35.0% | |
| GACAAGTTCCAGCTAAAATA+CGG | + | chr8.4:13741613-13741632 | None:intergenic | 35.0% | |
| GGTAAAAAAGGAACCTTCAA+TGG | + | chr8.4:13740535-13740554 | None:intergenic | 35.0% | |
| TCACAATGCAGAGGTAAAAA+AGG | + | chr8.4:13740547-13740566 | None:intergenic | 35.0% | |
| TGACAACAAGTGTTATGACT+AGG | + | chr8.4:13741282-13741301 | None:intergenic | 35.0% | |
| TGGAAACATTGCCAGTAAAA+GGG | + | chr8.4:13741583-13741602 | None:intergenic | 35.0% | |
| ! | AGCAACCTAAAGTGTTTCTA+TGG | - | chr8.4:13740317-13740336 | MS.gene58215:intron | 35.0% |
| ! | CCAATCCAACTTGAAAGTAT+AGG | - | chr8.4:13741090-13741109 | MS.gene58215:intron | 35.0% |
| ! | GTAGACCTATACTTTCAAGT+TGG | + | chr8.4:13741098-13741117 | None:intergenic | 35.0% |
| ! | TTCTTTAAATCCGTTGGTCT+TGG | - | chr8.4:13740489-13740508 | MS.gene58215:intron | 35.0% |
| !! | CCTATACTTTCAAGTTGGAT+TGG | + | chr8.4:13741093-13741112 | None:intergenic | 35.0% |
| !!! | AAGCTTTTGATTTCGAAACC+AGG | - | chr8.4:13741021-13741040 | MS.gene58215:intron | 35.0% |
| !!! | AGCTTTTGATTTCGAAACCA+GGG | - | chr8.4:13741022-13741041 | MS.gene58215:intron | 35.0% |
| !!! | GTCCTGTTTTTATTTGCACT+TGG | - | chr8.4:13741717-13741736 | MS.gene58215:intron | 35.0% |
| AACCGCTTCTTTAAATCCGT+TGG | - | chr8.4:13740483-13740502 | MS.gene58215:intron | 40.0% | |
| CATGATCTCCTTCCTTAACA+CGG | + | chr8.4:13741842-13741861 | None:intergenic | 40.0% | |
| CTAGGGATATCGAAAACCAT+TGG | + | chr8.4:13741264-13741283 | None:intergenic | 40.0% | |
| GCCATTATGCCAAAACTCAA+AGG | + | chr8.4:13740843-13740862 | None:intergenic | 40.0% | |
| GTCACAGTGCTAAGATGAAT+AGG | - | chr8.4:13741630-13741649 | MS.gene58215:intron | 40.0% | |
| TGTGTGTGTGTGTGTGTAAA+CGG | - | chr8.4:13741939-13741958 | MS.gene58215:intron | 40.0% | |
| TGTTGTCATTGATCGTGTCA+TGG | - | chr8.4:13741294-13741313 | MS.gene58215:intron | 40.0% | |
| TTACTGGCAATGTTTCCATC+CGG | - | chr8.4:13741585-13741604 | MS.gene58215:intron | 40.0% | |
| TTGTGTGTTACAGACTGAGA+AGG | - | chr8.4:13740285-13740304 | MS.gene58215:intron | 40.0% | |
| ! | GACCAACGGATTTAAAGAAG+CGG | + | chr8.4:13740488-13740507 | None:intergenic | 40.0% |
| ! | TTGGTAGCTCAAAGAAGAGT+GGG | - | chr8.4:13740433-13740452 | MS.gene58215:CDS | 40.0% |
| ! | TTTGGTAGCTCAAAGAAGAG+TGG | - | chr8.4:13740432-13740451 | MS.gene58215:CDS | 40.0% |
| !! | GCCTTTGAGTTTTGGCATAA+TGG | - | chr8.4:13740839-13740858 | MS.gene58215:intron | 40.0% |
| AAAGGAAAGAGGCCTGGAAA+AGG | - | chr8.4:13740456-13740475 | MS.gene58215:CDS | 45.0% | |
| ACACGATCAACGACAACAAG+TGG | + | chr8.4:13741347-13741366 | None:intergenic | 45.0% | |
| AGAAGAGTGGGAAAGGAAAG+AGG | - | chr8.4:13740445-13740464 | MS.gene58215:CDS | 45.0% | |
| AGCTCAAAGAAGAGTGGGAA+AGG | - | chr8.4:13740438-13740457 | MS.gene58215:CDS | 45.0% | |
| CAATCGCAGGTTCATCATTC+AGG | + | chr8.4:13740911-13740930 | None:intergenic | 45.0% | |
| CAATGCAGGTGAGACTCAAT+AGG | - | chr8.4:13741873-13741892 | MS.gene58215:intron | 45.0% | |
| GAACCTTCAATGGCTTCTCT+GGG | + | chr8.4:13740525-13740544 | None:intergenic | 45.0% | |
| GACTATGGATCTTCAATCGC+AGG | + | chr8.4:13740924-13740943 | None:intergenic | 45.0% | |
| GTGTCATGGCATCATCTACT+TGG | - | chr8.4:13741308-13741327 | MS.gene58215:intron | 45.0% | |
| TACTGGCAATGTTTCCATCC+GGG | - | chr8.4:13741586-13741605 | MS.gene58215:intron | 45.0% | |
| TGTTGTCGTTGATCGTGTCA+TGG | - | chr8.4:13741349-13741368 | MS.gene58215:intron | 45.0% | |
| ! | AGGGCACTTCTTGTCAATGT+AGG | + | chr8.4:13741564-13741583 | None:intergenic | 45.0% |
| !!! | GACAAGAAGTGCCCTTTTAC+TGG | - | chr8.4:13741569-13741588 | MS.gene58215:intron | 45.0% |
| !! | AAAATAAAAAAAATCATAAA+AGG | + | chr8.4:13741530-13741549 | None:intergenic | 5.0% |
| AACCTCACAGTCTTGGAGAG+AGG | + | chr8.4:13742018-13742037 | None:intergenic | 50.0% | |
| AAGCAGGGTGATACATGAGC+AGG | + | chr8.4:13741819-13741838 | None:intergenic | 50.0% | |
| ACTCCCAGAGAAGCCATTGA+AGG | - | chr8.4:13740519-13740538 | MS.gene58215:intron | 50.0% | |
| ACTGGCAATGTTTCCATCCG+GGG | - | chr8.4:13741587-13741606 | MS.gene58215:intron | 50.0% | |
| ATCACCCTGCTTCCGTGTTA+AGG | - | chr8.4:13741827-13741846 | MS.gene58215:CDS | 50.0% | |
| CCTTCCTTAACACGGAAGCA+GGG | + | chr8.4:13741834-13741853 | None:intergenic | 50.0% | |
| GACGTTGAACCTCACAGTCT+TGG | + | chr8.4:13742025-13742044 | None:intergenic | 50.0% | |
| GGAACCTTCAATGGCTTCTC+TGG | + | chr8.4:13740526-13740545 | None:intergenic | 50.0% | |
| GTCTTGAAAGTGATCCCAGC+TGG | - | chr8.4:13742042-13742061 | MS.gene58215:intron | 50.0% | |
| TCCTTCCTTAACACGGAAGC+AGG | + | chr8.4:13741835-13741854 | None:intergenic | 50.0% | |
| TGCAGGTGAGACTCAATAGG+AGG | - | chr8.4:13741876-13741895 | MS.gene58215:intron | 50.0% | |
| TGGAGAGAGGCCTGATGAAA+TGG | + | chr8.4:13742005-13742024 | None:intergenic | 50.0% | |
| TTCCAGCTAAAATACGGCCC+CGG | + | chr8.4:13741607-13741626 | None:intergenic | 50.0% | |
| ! | AAGCGGTTTCCACCTTTTCC+AGG | + | chr8.4:13740471-13740490 | None:intergenic | 50.0% |
| !! | GCTGGGAAGAAGGCATTTAC+TGG | - | chr8.4:13742078-13742097 | MS.gene58215:intron | 50.0% |
| AGCTAAAATACGGCCCCGGA+TGG | + | chr8.4:13741603-13741622 | None:intergenic | 55.0% | |
| AGTGGGAAAGGAAAGAGGCC+TGG | - | chr8.4:13740450-13740469 | MS.gene58215:CDS | 55.0% | |
| CACCACTGGATGAACCAGCT+GGG | + | chr8.4:13742059-13742078 | None:intergenic | 55.0% | |
| CCCTGCTTCCGTGTTAAGGA+AGG | - | chr8.4:13741831-13741850 | MS.gene58215:CDS | 55.0% | |
| CTGGTTCATCCAGTGGTGCT+GGG | - | chr8.4:13742061-13742080 | MS.gene58215:intron | 55.0% | |
| GGAAAGAGGCCTGGAAAAGG+TGG | - | chr8.4:13740459-13740478 | MS.gene58215:CDS | 55.0% | |
| ! | ATCCAGTGGTGCTGGGAAGA+AGG | - | chr8.4:13742068-13742087 | MS.gene58215:intron | 55.0% |
| ! | ATCCCAGCTGGTTCATCCAG+TGG | - | chr8.4:13742054-13742073 | MS.gene58215:intron | 55.0% |
| !!! | ATCCGGGGCCGTATTTTAGC+TGG | - | chr8.4:13741602-13741621 | MS.gene58215:intron | 55.0% |
| GCACCACTGGATGAACCAGC+TGG | + | chr8.4:13742060-13742079 | None:intergenic | 60.0% | |
| GGCCTCTCTCCAAGACTGTG+AGG | - | chr8.4:13742013-13742032 | MS.gene58215:intron | 60.0% | |
| TGCCTTCTTCCCAGCACCAC+TGG | + | chr8.4:13742073-13742092 | None:intergenic | 60.0% | |
| ! | GCTGGTTCATCCAGTGGTGC+TGG | - | chr8.4:13742060-13742079 | MS.gene58215:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 13740185 | 13742107 | 13740185 | ID=MS.gene58215 |
| chr8.4 | mRNA | 13740185 | 13742107 | 13740185 | ID=MS.gene58215.t1;Parent=MS.gene58215 |
| chr8.4 | exon | 13742096 | 13742107 | 13742096 | ID=MS.gene58215.t1.exon1;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13742096 | 13742107 | 13742096 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| chr8.4 | exon | 13741954 | 13741994 | 13741954 | ID=MS.gene58215.t1.exon2;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13741954 | 13741994 | 13741954 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| chr8.4 | exon | 13741752 | 13741852 | 13741752 | ID=MS.gene58215.t1.exon3;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13741752 | 13741852 | 13741752 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| chr8.4 | exon | 13740590 | 13740734 | 13740590 | ID=MS.gene58215.t1.exon4;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13740590 | 13740734 | 13740590 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| chr8.4 | exon | 13740412 | 13740501 | 13740412 | ID=MS.gene58215.t1.exon5;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13740412 | 13740501 | 13740412 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| chr8.4 | exon | 13740185 | 13740278 | 13740185 | ID=MS.gene58215.t1.exon6;Parent=MS.gene58215.t1 |
| chr8.4 | CDS | 13740185 | 13740278 | 13740185 | ID=cds.MS.gene58215.t1;Parent=MS.gene58215.t1 |
| Gene Sequence |
| Protein sequence |
