AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54776


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54776.t1 MTR_1g095560 97.386 459 12 0 1 459 1 459 0.0 932
MS.gene54776.t1 MTR_1g095560 91.039 491 12 1 1 459 1 491 0.0 918
MS.gene54776.t1 MTR_1g095540 84.498 458 71 0 1 458 1 458 0.0 818
MS.gene54776.t1 MTR_2g062990 54.466 459 204 3 3 457 6 463 0.0 543
MS.gene54776.t1 MTR_2g063000 54.725 455 197 4 8 457 14 464 0.0 533
MS.gene54776.t1 MTR_2g062980 53.896 462 202 5 3 457 6 463 0.0 531
MS.gene54776.t1 MTR_7g013790 55.098 461 192 7 7 457 10 465 0.0 523
MS.gene54776.t1 MTR_2g081620 53.761 452 206 3 8 457 14 464 0.0 522
MS.gene54776.t1 MTR_2g063000 49.670 455 189 5 8 457 14 433 1.54e-162 466
MS.gene54776.t1 MTR_3g079560 51.620 432 196 7 28 458 73 492 1.39e-156 453
MS.gene54776.t1 MTR_3g034290 49.535 430 207 5 28 456 70 490 2.17e-156 452
MS.gene54776.t1 MTR_3g079570 52.235 425 191 6 26 450 72 484 3.01e-156 452
MS.gene54776.t1 MTR_3g079600 52.347 426 189 6 28 450 71 485 4.29e-155 449
MS.gene54776.t1 MTR_4g075150 48.922 464 224 9 1 456 3 461 3.46e-154 446
MS.gene54776.t1 MTR_4g075150 48.712 466 224 9 1 456 3 463 9.24e-154 445
MS.gene54776.t1 MTR_3g079620 50.114 437 197 7 31 458 76 500 7.47e-153 444
MS.gene54776.t1 MTR_3g079590 51.429 420 193 6 31 450 76 484 2.71e-150 437
MS.gene54776.t1 MTR_1g021010 50.459 436 199 8 17 450 60 480 2.72e-148 432
MS.gene54776.t1 MTR_0003s0560 49.188 431 207 7 28 457 69 488 9.32e-148 431
MS.gene54776.t1 MTR_1g020090 49.428 437 199 7 19 450 72 491 1.26e-147 431
MS.gene54776.t1 MTR_3g079630 48.853 436 198 8 26 450 71 492 8.24e-144 421
MS.gene54776.t1 MTR_1g021020 47.816 435 211 6 17 450 62 481 1.41e-141 415
MS.gene54776.t1 MTR_4g122950 44.538 476 240 7 5 459 8 480 1.41e-141 414
MS.gene54776.t1 MTR_4g089155 47.072 444 219 6 27 458 48 487 3.63e-141 414
MS.gene54776.t1 MTR_2g012860 44.538 476 235 7 6 457 4 474 8.28e-141 412
MS.gene54776.t1 MTR_4g122960 45.359 474 237 8 5 459 8 478 1.49e-139 409
MS.gene54776.t1 MTR_2g012850 44.658 468 242 8 3 458 5 467 7.71e-137 402
MS.gene54776.t1 MTR_3g034290 50.000 348 165 4 28 375 70 408 8.19e-126 371
MS.gene54776.t1 MTR_8g099930 40.086 464 253 11 12 458 9 464 6.45e-116 348
MS.gene54776.t1 MTR_2g449850 42.438 443 231 9 28 458 34 464 2.03e-115 347
MS.gene54776.t1 MTR_3g090130 42.117 463 250 10 6 459 6 459 4.88e-115 346
MS.gene54776.t1 MTR_5g072570 40.725 469 258 9 3 459 4 464 1.87e-113 342
MS.gene54776.t1 MTR_3g498755 40.000 440 243 10 31 456 13 445 1.98e-112 338
MS.gene54776.t1 MTR_3g434850 41.290 465 241 12 5 457 11 455 2.92e-111 336
MS.gene54776.t1 MTR_7g021130 40.774 439 237 11 31 456 29 457 1.91e-109 331
MS.gene54776.t1 MTR_3g090150 40.091 439 251 8 30 459 31 466 1.62e-105 322
MS.gene54776.t1 MTR_1g040370 38.799 433 216 9 29 456 27 415 1.63e-101 310
MS.gene54776.t1 MTR_0003s0560 50.936 267 116 6 28 289 69 325 1.46e-87 271
MS.gene54776.t1 MTR_8g011350 34.990 483 254 12 19 450 17 490 3.66e-82 262
MS.gene54776.t1 MTR_7g080180 34.320 507 257 18 5 455 12 498 2.90e-75 244
MS.gene54776.t1 MTR_7g051430 32.727 495 275 13 5 450 5 490 3.48e-73 239
MS.gene54776.t1 MTR_8g011350 34.056 461 244 12 19 428 17 468 4.84e-72 235
MS.gene54776.t1 MTR_1g102130 33.778 450 235 15 26 456 85 490 8.06e-72 235
MS.gene54776.t1 MTR_7g080180 34.325 437 224 16 33 414 28 456 6.55e-62 208
MS.gene54776.t1 MTR_7g051430 31.981 419 228 12 5 375 5 414 7.67e-54 186
MS.gene54776.t1 MTR_2g018590 29.140 477 299 15 2 455 9 469 1.95e-53 186
MS.gene54776.t1 MTR_4g021490 30.562 445 269 14 32 452 39 467 3.28e-53 186
MS.gene54776.t1 MTR_4g021520 30.856 444 269 14 32 452 39 467 4.17e-53 185
MS.gene54776.t1 MTR_4g021535 30.149 471 293 15 4 452 7 463 4.82e-53 185
MS.gene54776.t1 MTR_4g021510 31.306 444 267 15 32 452 38 466 1.61e-52 184
MS.gene54776.t1 MTR_2g018600 29.399 466 285 16 15 455 23 469 1.84e-52 183
MS.gene54776.t1 MTR_3g100420 30.063 479 295 14 8 455 27 496 2.11e-52 184
MS.gene54776.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 9.57e-52 187
MS.gene54776.t1 MTR_4g021500 30.404 421 257 14 45 452 487 884 1.38e-45 170
MS.gene54776.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 1.19e-51 187
MS.gene54776.t1 MTR_4g021500 29.425 435 261 13 45 452 487 902 2.13e-45 169
MS.gene54776.t1 MTR_3g045770 28.017 464 298 12 1 447 2 446 9.55e-51 178
MS.gene54776.t1 MTR_4g021530 29.614 466 291 16 8 452 18 467 1.34e-50 178
MS.gene54776.t1 MTR_2g018630 28.416 461 293 14 13 455 24 465 3.36e-47 169
MS.gene54776.t1 MTR_4g021520 31.111 405 242 13 32 414 39 428 3.52e-44 160
MS.gene54776.t1 MTR_4g057585 28.833 437 256 13 38 451 87 491 7.88e-44 160
MS.gene54776.t1 MTR_4g084710 29.314 423 255 15 49 455 45 439 1.36e-42 156
MS.gene54776.t1 MTR_4g057595 28.271 428 252 13 47 451 97 492 7.59e-42 155
MS.gene54776.t1 MTR_2g095730 28.741 421 267 14 47 453 94 495 8.57e-42 155
MS.gene54776.t1 MTR_2g095750 27.166 427 263 13 47 453 100 498 3.12e-41 154
MS.gene54776.t1 MTR_1g050545 27.700 426 254 14 45 447 81 475 1.51e-40 152
MS.gene54776.t1 MTR_0075s0010 30.789 380 190 16 30 402 5 318 5.83e-39 144
MS.gene54776.t1 MTR_4g057600 27.230 426 263 14 47 453 95 492 2.13e-38 145
MS.gene54776.t1 MTR_1g094155 26.730 419 258 13 49 447 92 481 5.07e-38 145
MS.gene54776.t1 MTR_4g057570 26.457 446 275 12 32 453 74 490 5.43e-38 144
MS.gene54776.t1 MTR_5g097180 27.316 421 266 13 49 455 43 437 1.03e-37 143
MS.gene54776.t1 MTR_2g009200 26.350 463 268 14 19 450 14 434 2.41e-34 134
MS.gene54776.t1 MTR_4g021535 26.752 471 262 17 4 452 7 416 2.70e-34 133
MS.gene54776.t1 MTR_2g018630 26.257 358 240 11 112 455 13 360 1.15e-30 122
MS.gene54776.t1 MTR_2g095710 27.427 412 243 16 62 453 106 481 5.32e-30 122
MS.gene54776.t1 MTR_1g051175 38.938 113 61 4 39 150 18 123 3.68e-16 79.0
MS.gene54776.t1 MTR_4g056520 30.968 155 97 4 41 193 27 173 2.11e-14 75.5
MS.gene54776.t1 MTR_4g122970 37.349 83 42 2 8 82 7 87 3.96e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54776.t1 AT3G07990 76.092 435 104 0 22 456 23 457 0.0 713
MS.gene54776.t1 AT2G35780 70.481 437 123 3 22 456 19 451 0.0 653
MS.gene54776.t1 AT4G30610 55.769 468 193 6 1 458 1 464 0.0 541
MS.gene54776.t1 AT4G30810 58.237 431 175 2 23 450 28 456 0.0 539
MS.gene54776.t1 AT2G24010 55.862 435 187 4 25 458 23 453 0.0 515
MS.gene54776.t1 AT2G24000 55.481 447 186 6 22 458 20 463 0.0 515
MS.gene54776.t1 AT3G02110 54.911 448 182 7 26 458 31 473 1.12e-179 511
MS.gene54776.t1 AT2G24010 53.778 450 188 5 25 458 23 468 2.42e-176 502
MS.gene54776.t1 AT2G35770 54.248 459 201 5 3 458 8 460 2.52e-175 499
MS.gene54776.t1 AT2G24010 51.392 467 182 6 33 458 2 464 2.06e-168 482
MS.gene54776.t1 AT5G23210 50.330 455 196 8 28 457 47 496 6.43e-153 444
MS.gene54776.t1 AT3G63470 49.315 438 202 9 28 459 77 500 2.95e-152 442
MS.gene54776.t1 AT3G17180 49.111 450 210 8 25 458 31 477 1.59e-145 424
MS.gene54776.t1 AT1G61130 47.210 466 233 8 1 458 2 462 2.84e-143 418
MS.gene54776.t1 AT5G08260 44.025 477 236 10 5 457 8 477 2.14e-138 406
MS.gene54776.t1 AT1G11080 47.020 453 219 6 24 458 42 491 5.36e-135 398
MS.gene54776.t1 AT1G11080 47.020 453 219 6 24 458 42 491 6.80e-135 398
MS.gene54776.t1 AT2G24010 53.482 359 147 5 33 375 2 356 3.64e-134 391
MS.gene54776.t1 AT3G52020 46.789 436 217 11 26 456 73 498 6.40e-134 395
MS.gene54776.t1 AT5G23210 49.512 410 177 8 28 412 47 451 4.90e-132 389
MS.gene54776.t1 AT4G15100 43.633 479 244 8 3 458 8 483 1.52e-128 381
MS.gene54776.t1 AT5G23210 48.387 403 181 6 80 457 1 401 6.74e-127 374
MS.gene54776.t1 AT5G23210 48.608 395 176 6 88 457 8 400 1.20e-125 371
MS.gene54776.t1 AT3G17180 46.944 409 199 7 25 418 31 436 4.62e-125 370
MS.gene54776.t1 AT2G05850 41.163 447 246 9 19 458 50 486 3.19e-121 362
MS.gene54776.t1 AT3G52000 43.578 436 230 11 28 459 59 482 7.13e-119 356
MS.gene54776.t1 AT3G52010 41.163 447 243 11 21 459 53 487 4.41e-117 352
MS.gene54776.t1 AT2G33530 43.527 448 232 11 22 456 23 462 1.13e-116 350
MS.gene54776.t1 AT1G43780 41.798 445 238 10 30 459 35 473 1.44e-112 340
MS.gene54776.t1 AT2G12480 40.230 435 250 6 29 457 28 458 3.53e-112 339
MS.gene54776.t1 AT5G42240 40.716 447 241 9 29 459 29 467 2.06e-109 332
MS.gene54776.t1 AT1G28110 40.868 438 238 10 31 456 30 458 3.50e-109 331
MS.gene54776.t1 AT1G28110 40.868 438 238 10 31 456 30 458 3.50e-109 331
MS.gene54776.t1 AT2G24000 41.834 447 184 9 22 458 20 400 4.50e-107 323
MS.gene54776.t1 AT2G12480 38.710 434 234 7 29 457 28 434 1.03e-104 319
MS.gene54776.t1 AT5G23210 47.293 351 158 6 88 413 8 356 1.09e-104 316
MS.gene54776.t1 AT5G42230 38.702 447 250 9 29 459 25 463 2.88e-104 318
MS.gene54776.t1 AT5G42230 38.702 447 250 9 29 459 25 463 2.88e-104 318
MS.gene54776.t1 AT2G12480 38.710 434 232 7 29 457 28 432 2.54e-103 315
MS.gene54776.t1 AT2G12480 38.621 435 232 8 29 457 28 433 1.55e-101 310
MS.gene54776.t1 AT4G12910 34.949 495 268 11 9 455 9 497 1.03e-82 264
MS.gene54776.t1 AT3G25420 34.553 492 266 13 14 455 9 494 1.95e-82 263
MS.gene54776.t1 AT3G56540 61.667 180 65 3 10 189 57 232 9.24e-71 225
MS.gene54776.t1 AT4G12910 33.775 453 247 10 9 414 9 455 8.12e-69 226
MS.gene54776.t1 AT2G22990 32.102 433 262 13 33 455 23 433 1.07e-59 202
MS.gene54776.t1 AT2G22920 31.409 433 265 13 33 455 25 435 5.28e-59 200
MS.gene54776.t1 AT2G22970 32.102 433 260 14 33 455 25 433 1.01e-58 199
MS.gene54776.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.56e-54 187
MS.gene54776.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.78e-54 187
MS.gene54776.t1 AT2G22990 32.187 407 245 12 33 429 23 408 1.30e-53 185
MS.gene54776.t1 AT2G22990 32.108 408 246 12 33 430 23 409 1.32e-53 186
MS.gene54776.t1 AT3G12203 30.621 467 282 15 1 455 1 437 5.59e-53 184
MS.gene54776.t1 AT3G12203 31.178 433 263 13 33 455 9 416 1.31e-52 182
MS.gene54776.t1 AT2G23000 28.637 433 279 12 33 455 25 437 1.49e-52 183
MS.gene54776.t1 AT2G23000 28.637 433 279 12 33 455 25 437 1.49e-52 183
MS.gene54776.t1 AT1G73290 30.594 438 258 14 33 455 32 438 2.96e-52 182
MS.gene54776.t1 AT2G22970 31.340 418 254 13 33 440 25 419 3.41e-52 182
MS.gene54776.t1 AT3G10450 29.930 431 272 10 33 455 29 437 5.70e-52 181
MS.gene54776.t1 AT1G73280 30.979 439 257 14 33 455 33 441 7.82e-52 181
MS.gene54776.t1 AT2G22970 31.618 408 246 13 33 430 25 409 1.48e-51 180
MS.gene54776.t1 AT2G23010 28.761 452 290 13 15 455 7 437 1.93e-51 180
MS.gene54776.t1 AT2G22990 30.485 433 260 14 33 455 23 424 4.50e-51 179
MS.gene54776.t1 AT2G23010 28.540 452 291 13 15 455 7 437 8.87e-51 178
MS.gene54776.t1 AT2G22980 30.324 432 255 15 33 450 26 425 1.81e-50 177
MS.gene54776.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.56e-50 177
MS.gene54776.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.56e-50 177
MS.gene54776.t1 AT3G12220 30.963 436 257 14 33 453 27 433 1.09e-49 175
MS.gene54776.t1 AT2G22920 31.378 392 239 11 33 415 25 395 1.24e-49 174
MS.gene54776.t1 AT5G36180 30.137 438 262 14 33 455 33 441 1.34e-48 172
MS.gene54776.t1 AT3G10450 29.540 413 261 10 51 455 4 394 3.51e-48 170
MS.gene54776.t1 AT1G33540 30.425 447 276 14 33 455 29 464 9.08e-48 171
MS.gene54776.t1 AT3G12203 30.941 404 244 13 62 455 1 379 1.37e-47 168
MS.gene54776.t1 AT5G09640 27.686 484 292 13 6 455 6 465 1.65e-47 170
MS.gene54776.t1 AT3G12230 28.868 433 274 11 33 455 27 435 1.36e-46 167
MS.gene54776.t1 AT5G22980 28.605 423 264 14 45 453 96 494 1.68e-46 168
MS.gene54776.t1 AT3G12240 29.062 437 268 15 33 455 28 436 1.92e-46 166
MS.gene54776.t1 AT3G12220 30.383 418 247 14 51 453 15 403 5.76e-46 164
MS.gene54776.t1 AT1G33540 30.303 429 264 14 51 455 4 421 7.89e-46 164
MS.gene54776.t1 AT2G22980 29.384 422 253 14 33 440 26 416 3.00e-45 163
MS.gene54776.t1 AT1G73310 28.704 432 276 12 33 455 33 441 3.62e-45 163
MS.gene54776.t1 AT3G10450 29.557 406 257 9 33 430 29 413 6.19e-45 162
MS.gene54776.t1 AT2G22980 29.854 412 244 14 33 430 26 406 7.23e-45 162
MS.gene54776.t1 AT1G73290 30.730 397 231 12 33 415 32 398 2.43e-44 160
MS.gene54776.t1 AT3G45010 27.674 430 275 11 38 453 92 499 3.37e-44 162
MS.gene54776.t1 AT3G10410 28.111 434 264 15 38 452 90 494 4.23e-43 159
MS.gene54776.t1 AT2G22990 31.065 338 209 10 123 455 1 319 1.55e-41 150
MS.gene54776.t1 AT3G10450 29.124 388 246 9 51 430 4 370 3.44e-41 151
MS.gene54776.t1 AT2G22990 30.769 338 210 10 123 455 1 319 5.71e-41 149
MS.gene54776.t1 AT2G22920 32.686 309 179 10 33 332 25 313 2.09e-40 147
MS.gene54776.t1 AT1G73310 29.032 403 256 10 33 427 33 413 9.17e-40 148
MS.gene54776.t1 AT2G22970 32.686 309 178 10 33 332 25 312 4.62e-39 144
MS.gene54776.t1 AT3G12220 29.767 430 218 16 33 453 27 381 3.30e-38 143
MS.gene54776.t1 AT1G73280 33.457 269 161 7 33 287 33 297 1.33e-37 141
MS.gene54776.t1 AT1G73290 33.086 269 160 8 33 287 32 294 7.41e-37 137
MS.gene54776.t1 AT1G73280 28.451 355 216 11 112 455 12 339 5.74e-34 130
MS.gene54776.t1 AT2G22980 32.090 268 164 7 33 291 26 284 2.05e-33 129
MS.gene54776.t1 AT1G15000 28.103 427 264 13 49 459 37 436 1.07e-32 129
MS.gene54776.t1 AT1G73280 28.446 341 206 11 126 455 1 314 2.60e-31 122
MS.gene54776.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.68e-31 122
MS.gene54776.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.68e-31 122
MS.gene54776.t1 AT2G22980 27.760 317 192 11 123 430 1 289 8.47e-27 109
MS.gene54776.t1 AT5G36180 27.356 329 204 10 112 430 12 315 2.27e-25 106
MS.gene54776.t1 AT5G22960 31.188 202 101 5 11 211 10 174 1.22e-24 100
MS.gene54776.t1 AT5G36180 27.089 347 207 11 112 437 12 333 2.29e-24 103
MS.gene54776.t1 AT1G73310 26.646 319 212 7 112 427 12 311 2.20e-23 100
MS.gene54776.t1 AT2G22920 26.838 272 176 8 189 455 3 256 3.76e-23 98.6
MS.gene54776.t1 AT2G27920 23.656 465 297 21 9 439 5 445 5.15e-16 80.5
MS.gene54776.t1 AT2G22960 30.147 136 90 4 321 455 53 184 1.93e-12 66.2

Find 106 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAACTAATGGCCTTAAAT+TGG 0.173728 1.2:-72889314 None:intergenic
TAACAGGGATTCCATATATT+TGG 0.181948 1.2:+72890776 MS.gene54776:CDS
GTGATATTGTTGGGAATTAT+TGG 0.185000 1.2:+72890904 MS.gene54776:intron
ACTTGTTTACCAGAGAAATA+AGG 0.220874 1.2:+72890163 MS.gene54776:CDS
TGAAATTCCAACACAGAAAA+TGG 0.225573 1.2:-72889128 None:intergenic
GGTTGTTCTTCAATTGCTTA+TGG 0.253357 1.2:+72889355 MS.gene54776:CDS
TGTTCAAATCCAACATTCTT+TGG 0.267824 1.2:-72889208 None:intergenic
CTGCATGTCTTCCAAATATA+TGG 0.277840 1.2:-72890787 None:intergenic
TGAAGCGCCTTCTGCACTTC+TGG 0.279971 1.2:-72890745 None:intergenic
GTTGGATTTGAACAGTATTC+AGG 0.287775 1.2:+72889217 MS.gene54776:CDS
AAACAAAACAATATAGAATA+TGG 0.298366 1.2:-72889101 None:intergenic
TGAACCGTGGACCCAATTTA+AGG 0.299323 1.2:+72889302 MS.gene54776:CDS
CTAAGAATTGCTTGTGACTT+TGG 0.299740 1.2:+72890424 MS.gene54776:CDS
GCGCTTCATGCCAATGTAAC+AGG 0.306670 1.2:+72890760 MS.gene54776:CDS
TATGGTGCTTCTGAAGAAAT+TGG 0.325012 1.2:+72889373 MS.gene54776:CDS
GTCTCCGGGTATGGGTATTC+AGG 0.330012 1.2:+72890979 MS.gene54776:CDS
TTTCTGTGTTGGAATTTCAT+TGG 0.334125 1.2:+72889132 MS.gene54776:CDS
AATCCCTTAAAATTGATAAC+TGG 0.337875 1.2:-72890197 None:intergenic
TGTCAATTCCCTTATTTCTC+TGG 0.354954 1.2:-72890172 None:intergenic
CATAGAGAATTCTACATTGC+TGG 0.368294 1.2:+72889980 MS.gene54776:CDS
AACTTATTAACGCTGGTCTC+CGG 0.369243 1.2:+72890964 MS.gene54776:CDS
TTAACGCTGGTCTCCGGGTA+TGG 0.373121 1.2:+72890970 MS.gene54776:CDS
CTTGTTTACCAGAGAAATAA+GGG 0.385746 1.2:+72890164 MS.gene54776:CDS
GGATGGAGTCAAGTTTATAA+AGG 0.388461 1.2:+72891934 MS.gene54776:CDS
GGCGGAGTATAAATGCTATA+TGG 0.395551 1.2:-72890520 None:intergenic
CTGTTCCTTGATTCTCCTGC+TGG 0.401847 1.2:+72889576 MS.gene54776:CDS
CTTGATTCTCCTGCTGGTGT+TGG 0.404698 1.2:+72889582 MS.gene54776:CDS
TGATTTCAGATTCTACATAT+AGG 0.409759 1.2:+72890398 MS.gene54776:CDS
TTCTTGACAGTGATATTGTT+GGG 0.410531 1.2:+72890895 MS.gene54776:intron
TACTCTTCTGTGAAGGTTGG+TGG 0.412687 1.2:+72891913 MS.gene54776:intron
AAAACTAATGGCCTTAAATT+GGG 0.416290 1.2:-72889313 None:intergenic
TTAATAAGTTCATGATATAT+AGG 0.416930 1.2:-72890951 None:intergenic
CCATCATCAATTGGTATCCT+TGG 0.423024 1.2:+72891789 MS.gene54776:CDS
AAGAAAAGTGATTTGCCATC+AGG 0.425397 1.2:-72889412 None:intergenic
ACGATTATCATGACTTGGTT+GGG 0.439458 1.2:+72890347 MS.gene54776:CDS
TTATGGCTTAATGGTGGTCC+TGG 0.448568 1.2:+72889334 MS.gene54776:CDS
GATGATGGTTGGTAGCTTCA+AGG 0.449314 1.2:-72891774 None:intergenic
ACAACAGATCTGTACACATT+TGG 0.450890 1.2:+72889624 MS.gene54776:CDS
TTTCTTGACAGTGATATTGT+TGG 0.454235 1.2:+72890894 MS.gene54776:intron
GACGATTATCATGACTTGGT+TGG 0.455357 1.2:+72890346 MS.gene54776:CDS
CCAACATTCTTTGGTTGCCC+TGG 0.461852 1.2:-72889199 None:intergenic
CCATTAAGCCATAAAACTAA+TGG 0.465147 1.2:-72889325 None:intergenic
TGGTTGGGACATTTGAGTAC+TGG 0.468313 1.2:+72890362 MS.gene54776:CDS
ACATTTGGTGACCAGAAAAC+AGG 0.468417 1.2:+72889639 MS.gene54776:CDS
ATATAGGAAGCATAGACAAT+GGG 0.471053 1.2:-72890935 None:intergenic
CATATATTTGGAAGACATGC+AGG 0.472543 1.2:+72890788 MS.gene54776:CDS
CTCACATTGGTAACAATAAG+AGG 0.473526 1.2:+72891958 MS.gene54776:CDS
ATAGAGAATTCTACATTGCT+GGG 0.479532 1.2:+72889981 MS.gene54776:CDS
GCTTCTCATTAGCTTGATGA+TGG 0.483315 1.2:-72892060 None:intergenic
AGCTACCAACCATCATCAAT+TGG 0.485261 1.2:+72891780 MS.gene54776:CDS
ATATGGAATCCCTGTTACAT+TGG 0.488606 1.2:-72890770 None:intergenic
GCCTGAAAACATTGCACTGA+TGG 0.488616 1.2:-72890460 None:intergenic
ACTTATTAACGCTGGTCTCC+GGG 0.492860 1.2:+72890965 MS.gene54776:CDS
TAACGCTGGTCTCCGGGTAT+GGG 0.495844 1.2:+72890971 MS.gene54776:CDS
CAACACCAGCAGGAGAATCA+AGG 0.496627 1.2:-72889581 None:intergenic
GATGGAGTCAAGTTTATAAA+GGG 0.496669 1.2:+72891935 MS.gene54776:CDS
AGGTCATTATGTTCCTCAGT+TGG 0.498140 1.2:+72890136 MS.gene54776:intron
GATAAGATTAAGCAGTTACC+AGG 0.504649 1.2:+72889181 MS.gene54776:CDS
TGGTATCCTTGGTATGATAG+TGG 0.505825 1.2:+72891800 MS.gene54776:CDS
TTGGTAACAATAAGAGGTGC+TGG 0.519871 1.2:+72891964 MS.gene54776:CDS
GAATATCGAGTTGCGGTCAG+TGG 0.520379 1.2:-72891743 None:intergenic
TAGATCATTCTTGGAGAACA+AGG 0.525636 1.2:+72892032 MS.gene54776:CDS
CCAGGGCAACCAAAGAATGT+TGG 0.526279 1.2:+72889199 MS.gene54776:CDS
CTTCTGTGAAGGTTGGTGGA+TGG 0.542653 1.2:+72891917 MS.gene54776:intron
CCATCAGGCCTAATACGAAA+AGG 0.545705 1.2:-72889397 None:intergenic
ATACACGTCAGAATGCCTTT+CGG 0.549353 1.2:-72890713 None:intergenic
TTGGTGCTACAGGTTGGAAA+TGG 0.551086 1.2:+72890316 MS.gene54776:intron
TCACTCAGAAGCGGCTTGAA+CGG 0.556715 1.2:+72890559 MS.gene54776:CDS
ATTGCTGGGGAAAGTTATGC+AGG 0.557240 1.2:+72889995 MS.gene54776:CDS
GGATACCAATTGATGATGGT+TGG 0.557745 1.2:-72891785 None:intergenic
TCAGAATGCCTTTCGGTACA+CGG 0.563005 1.2:-72890706 None:intergenic
CCAAGGATACCAATTGATGA+TGG 0.563122 1.2:-72891789 None:intergenic
AGAGTTGCAGTTGCTGAGCA+AGG 0.568738 1.2:+72890487 MS.gene54776:CDS
CGCTTCATGCCAATGTAACA+GGG 0.570208 1.2:+72890761 MS.gene54776:CDS
GACTGACGATTATCATGACT+TGG 0.578942 1.2:+72890342 MS.gene54776:CDS
TTTGAGTACTGGTGGACACA+TGG 0.597648 1.2:+72890373 MS.gene54776:CDS
AGTGATGCGGTATTGTTACA+AGG 0.603572 1.2:-72890541 None:intergenic
AAATTGGGTCCACGGTTCAG+TGG 0.604072 1.2:-72889298 None:intergenic
TCATATGCTCTAGACATCCA+TGG 0.607409 1.2:-72890682 None:intergenic
CAATCGTCCAGAAGTGCAGA+AGG 0.609778 1.2:+72890738 MS.gene54776:CDS
TATATAGGAAGCATAGACAA+TGG 0.610027 1.2:-72890936 None:intergenic
ATGGCCTTAAATTGGGTCCA+CGG 0.610231 1.2:-72889306 None:intergenic
CTGTGAATGAACAGAATGGA+AGG 0.610232 1.2:+72889248 MS.gene54776:CDS
GCTTCGCGGGGCTTATGAAG+AGG 0.611657 1.2:-72891997 None:intergenic
TATCATGAACTTATTAACGC+TGG 0.615510 1.2:+72890957 MS.gene54776:CDS
GTGACTGTGAATGAACAGAA+TGG 0.619017 1.2:+72889244 MS.gene54776:CDS
TTGGGACATTTGAGTACTGG+TGG 0.625441 1.2:+72890365 MS.gene54776:CDS
CATATGATCCGTGTACCGAA+AGG 0.636629 1.2:+72890698 MS.gene54776:CDS
AAAAGAATAAACGCTTCGCG+GGG 0.640750 1.2:-72892009 None:intergenic
CGTACCTGAATACCCATACC+CGG 0.640864 1.2:-72890983 None:intergenic
ATAAGATTAAGCAGTTACCA+GGG 0.641370 1.2:+72889182 MS.gene54776:CDS
AATTCTCTATGCTTATACTG+AGG 0.645681 1.2:-72889968 None:intergenic
ATCGATAGAATATCGAGTTG+CGG 0.654875 1.2:-72891750 None:intergenic
AGTTTATAAAGGGCTCACAT+TGG 0.657748 1.2:+72891945 MS.gene54776:CDS
AATAAGAGGTGCTGGACACG+AGG 0.657878 1.2:+72891972 MS.gene54776:CDS
TCCTTGGTATGATAGTGGCA+AGG 0.660717 1.2:+72891805 MS.gene54776:CDS
ACCTTGCCACTATCATACCA+AGG 0.669971 1.2:-72891806 None:intergenic
TAGAGAATTCTACATTGCTG+GGG 0.672609 1.2:+72889982 MS.gene54776:CDS
TAAGCAATTGAAGAACAACC+AGG 0.684683 1.2:-72889352 None:intergenic
AATACCGCATCACTCAGAAG+CGG 0.685301 1.2:+72890550 MS.gene54776:CDS
ATTGAAGCACCACTGAACCG+TGG 0.692357 1.2:+72889289 MS.gene54776:CDS
TATAGGAAGCATAGACAATG+GGG 0.694959 1.2:-72890934 None:intergenic
CAAGCCGCTTCTGAGTGATG+CGG 0.701434 1.2:-72890554 None:intergenic
TGTGAATGAACAGAATGGAA+GGG 0.709446 1.2:+72889249 MS.gene54776:CDS
TAAACAAGTTGAGCCAACTG+AGG 0.719538 1.2:-72890149 None:intergenic
GATGCGGTATTGTTACAAGG+CGG 0.780235 1.2:-72890538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAATATAGAATA+TGG - chr1.2:72889104-72889123 None:intergenic 15.0%
!! TTAATAAGTTCATGATATAT+AGG - chr1.2:72890954-72890973 None:intergenic 15.0%
!!! ACTTTTTTGCTTATATTTAT+CGG + chr1.2:72891033-72891052 MS.gene54776:intron 15.0%
!!! TATCAGAATTTTGATTTAAA+AGG + chr1.2:72890858-72890877 MS.gene54776:intron 15.0%
!!! TTTATGCCTATTTATTATTT+TGG + chr1.2:72889533-72889552 MS.gene54776:intron 15.0%
!! AATAAACACAACAAAAGTAA+TGG - chr1.2:72891238-72891257 None:intergenic 20.0%
!! ATAAACACAACAAAAGTAAT+GGG - chr1.2:72891237-72891256 None:intergenic 20.0%
!! ATATTATGATGTGATTTGAT+TGG - chr1.2:72891547-72891566 None:intergenic 20.0%
!! ATGTATTTGGTATATAGTTA+AGG - chr1.2:72891011-72891030 None:intergenic 20.0%
!! ATTCAATTGATAAGTAAGTA+TGG - chr1.2:72890061-72890080 None:intergenic 20.0%
!! CAACATCCAAAATAATAAAT+AGG - chr1.2:72889542-72889561 None:intergenic 20.0%
!!! AAACCAGTTATCAATTTTAA+GGG + chr1.2:72890194-72890213 MS.gene54776:CDS 20.0%
!!! AAGGAACAAAGATATTTTTT+TGG - chr1.2:72891310-72891329 None:intergenic 20.0%
!!! CATATATTTTTCTTGTAAAG+TGG + chr1.2:72889933-72889952 MS.gene54776:CDS 20.0%
!!! TATATATCAGTTTTCTACTT+TGG + chr1.2:72890033-72890052 MS.gene54776:intron 20.0%
!!! TATCAATTTTAAGGGATTTA+TGG + chr1.2:72890202-72890221 MS.gene54776:CDS 20.0%
!!! TATTCTTTTTAGATCATTCT+TGG + chr1.2:72892023-72892042 MS.gene54776:CDS 20.0%
!!! TCTTCTTAACTTTGATATTT+TGG + chr1.2:72891692-72891711 MS.gene54776:intron 20.0%
!!! TGAAAAATTGAATGATTTTC+AGG + chr1.2:72890116-72890135 MS.gene54776:intron 20.0%
!!! TGTTCAAGTTTATACTAATT+TGG + chr1.2:72891859-72891878 MS.gene54776:intron 20.0%
! AACAAATTAAACACAGTTGA+TGG - chr1.2:72890641-72890660 None:intergenic 25.0%
! AATTTGTACTAGTAACATTC+GGG + chr1.2:72891438-72891457 MS.gene54776:intron 25.0%
! CAATTTGTACTAGTAACATT+CGG + chr1.2:72891437-72891456 MS.gene54776:intron 25.0%
! CTCGTTATATGATTATCATA+AGG - chr1.2:72890280-72890299 None:intergenic 25.0%
! GCATTTAGAGAAATATGAAA+TGG - chr1.2:72891373-72891392 None:intergenic 25.0%
! GTTATATGATTATCATAAGG+TGG - chr1.2:72890277-72890296 None:intergenic 25.0%
! TAGAGAAATATGAAATGGAT+GGG - chr1.2:72891368-72891387 None:intergenic 25.0%
! TATCTCAATAAATATCCACA+TGG + chr1.2:72891592-72891611 MS.gene54776:intron 25.0%
! TCAATAAATCGATAGCATAT+AGG - chr1.2:72890597-72890616 None:intergenic 25.0%
! TCATTGATCTATACAGAATA+TGG - chr1.2:72891487-72891506 None:intergenic 25.0%
! TCTGTATAGATCAATGATTA+TGG + chr1.2:72891490-72891509 MS.gene54776:intron 25.0%
! TCTTATCTGTAATCAAGAAT+TGG + chr1.2:72891666-72891685 MS.gene54776:intron 25.0%
! TGATTTCAGATTCTACATAT+AGG + chr1.2:72890398-72890417 MS.gene54776:CDS 25.0%
! TTAGAGAAATATGAAATGGA+TGG - chr1.2:72891369-72891388 None:intergenic 25.0%
!! AAAACTAATGGCCTTAAATT+GGG - chr1.2:72889316-72889335 None:intergenic 25.0%
!! AATCCCTTAAAATTGATAAC+TGG - chr1.2:72890200-72890219 None:intergenic 25.0%
!! AGCAAAAAAGTACATGTATT+TGG - chr1.2:72891024-72891043 None:intergenic 25.0%
!! CAAACCAGTTATCAATTTTA+AGG + chr1.2:72890193-72890212 MS.gene54776:CDS 25.0%
!! TAAAACTAATGGCCTTAAAT+TGG - chr1.2:72889317-72889336 None:intergenic 25.0%
!! TAAATTTTACTCTTCTGTGA+AGG + chr1.2:72891906-72891925 MS.gene54776:intron 25.0%
!! TAGTATGTGATATCAACTTT+TGG + chr1.2:72891151-72891170 MS.gene54776:intron 25.0%
!!! ATTTAAGGCCATTAGTTTTA+TGG + chr1.2:72889317-72889336 MS.gene54776:CDS 25.0%
!!! TATGCTATCGATTTATTGAA+TGG + chr1.2:72890598-72890617 MS.gene54776:intron 25.0%
AAGTGACACTCAAATGATTA+AGG - chr1.2:72891329-72891348 None:intergenic 30.0%
AATGCTCTTTGACATTATTG+AGG + chr1.2:72891388-72891407 MS.gene54776:intron 30.0%
AATTCTCTATGCTTATACTG+AGG - chr1.2:72889971-72889990 None:intergenic 30.0%
ACTTGTTTACCAGAGAAATA+AGG + chr1.2:72890163-72890182 MS.gene54776:CDS 30.0%
ATAAGATTAAGCAGTTACCA+GGG + chr1.2:72889182-72889201 MS.gene54776:CDS 30.0%
ATAGAGAATTCTACATTGCT+GGG + chr1.2:72889981-72890000 MS.gene54776:CDS 30.0%
ATGCTCTTTGACATTATTGA+GGG + chr1.2:72891389-72891408 MS.gene54776:intron 30.0%
CCATTAAGCCATAAAACTAA+TGG - chr1.2:72889328-72889347 None:intergenic 30.0%
CTTGTTTACCAGAGAAATAA+GGG + chr1.2:72890164-72890183 MS.gene54776:CDS 30.0%
GAGTTTGATTATTCTGTGAT+TGG + chr1.2:72890297-72890316 MS.gene54776:intron 30.0%
GATGGAGTCAAGTTTATAAA+GGG + chr1.2:72891935-72891954 MS.gene54776:CDS 30.0%
GGATTTATGGTAAGATTGTT+AGG + chr1.2:72890215-72890234 MS.gene54776:intron 30.0%
GTGATATTGTTGGGAATTAT+TGG + chr1.2:72890904-72890923 MS.gene54776:intron 30.0%
TAAAAAGAATAAACGCTTCG+CGG - chr1.2:72892014-72892033 None:intergenic 30.0%
TAACAGGGATTCCATATATT+TGG + chr1.2:72890776-72890795 MS.gene54776:CDS 30.0%
TATCATGAACTTATTAACGC+TGG + chr1.2:72890957-72890976 MS.gene54776:CDS 30.0%
TCTTATAAAACAAACAGCCA+TGG + chr1.2:72890665-72890684 MS.gene54776:intron 30.0%
TGAAATTCCAACACAGAAAA+TGG - chr1.2:72889131-72889150 None:intergenic 30.0%
TGTTCAAATCCAACATTCTT+TGG - chr1.2:72889211-72889230 None:intergenic 30.0%
TTCTTGACAGTGATATTGTT+GGG + chr1.2:72890895-72890914 MS.gene54776:intron 30.0%
TTGATATCACATACTATCCA+TGG - chr1.2:72891147-72891166 None:intergenic 30.0%
TTGATCTATACAGAATATGG+AGG - chr1.2:72891484-72891503 None:intergenic 30.0%
TTTCTGTGTTGGAATTTCAT+TGG + chr1.2:72889132-72889151 MS.gene54776:CDS 30.0%
TTTCTTGACAGTGATATTGT+TGG + chr1.2:72890894-72890913 MS.gene54776:intron 30.0%
! AAATTGGTCCTTTTCGTATT+AGG + chr1.2:72889389-72889408 MS.gene54776:CDS 30.0%
! ATATAGGAAGCATAGACAAT+GGG - chr1.2:72890938-72890957 None:intergenic 30.0%
! TATATAGGAAGCATAGACAA+TGG - chr1.2:72890939-72890958 None:intergenic 30.0%
! TTTTCTTGAATCGTTATGCT+TGG + chr1.2:72889428-72889447 MS.gene54776:CDS 30.0%
!!! CCATTAGTTTTATGGCTTAA+TGG + chr1.2:72889325-72889344 MS.gene54776:CDS 30.0%
!!! TATTATTTTGGATGTTGCAG+TGG + chr1.2:72889545-72889564 MS.gene54776:intron 30.0%
!!! TTAGTTTTATGGCTTAATGG+TGG + chr1.2:72889328-72889347 MS.gene54776:CDS 30.0%
AAAAAGAATAAACGCTTCGC+GGG - chr1.2:72892013-72892032 None:intergenic 35.0%
ACAACAGATCTGTACACATT+TGG + chr1.2:72889624-72889643 MS.gene54776:CDS 35.0%
AGTTTATAAAGGGCTCACAT+TGG + chr1.2:72891945-72891964 MS.gene54776:CDS 35.0%
ATATGGAATCCCTGTTACAT+TGG - chr1.2:72890773-72890792 None:intergenic 35.0%
ATGTTGAACACGTTCTATTG+AGG + chr1.2:72890828-72890847 MS.gene54776:intron 35.0%
CAAAGACTGAATCTCAGAAT+CGG - chr1.2:72889467-72889486 None:intergenic 35.0%
CAGAATATGGAGGTAATGAA+AGG - chr1.2:72891474-72891493 None:intergenic 35.0%
CATAGAGAATTCTACATTGC+TGG + chr1.2:72889980-72889999 MS.gene54776:CDS 35.0%
CATATATTTGGAAGACATGC+AGG + chr1.2:72890788-72890807 MS.gene54776:CDS 35.0%
CTAAGAATTGCTTGTGACTT+TGG + chr1.2:72890424-72890443 MS.gene54776:CDS 35.0%
CTGCATGTCTTCCAAATATA+TGG - chr1.2:72890790-72890809 None:intergenic 35.0%
GATAAGATTAAGCAGTTACC+AGG + chr1.2:72889181-72889200 MS.gene54776:CDS 35.0%
GGATGGAGTCAAGTTTATAA+AGG + chr1.2:72891934-72891953 MS.gene54776:CDS 35.0%
GGTTGTTCTTCAATTGCTTA+TGG + chr1.2:72889355-72889374 MS.gene54776:CDS 35.0%
GTTGGATTTGAACAGTATTC+AGG + chr1.2:72889217-72889236 MS.gene54776:CDS 35.0%
TAAGCAATTGAAGAACAACC+AGG - chr1.2:72889355-72889374 None:intergenic 35.0%
TAGAGAATTCTACATTGCTG+GGG + chr1.2:72889982-72890001 MS.gene54776:CDS 35.0%
TAGATCATTCTTGGAGAACA+AGG + chr1.2:72892032-72892051 MS.gene54776:CDS 35.0%
TGTAATGATCATGCTCATGA+AGG + chr1.2:72889804-72889823 MS.gene54776:intron 35.0%
TGTGAATGAACAGAATGGAA+GGG + chr1.2:72889249-72889268 MS.gene54776:CDS 35.0%
TTGACATCTGAATACATCCA+TGG + chr1.2:72891127-72891146 MS.gene54776:intron 35.0%
TTGCTAAAGCAAAACAAAGC+TGG - chr1.2:72889844-72889863 None:intergenic 35.0%
! AAGAAAAGTGATTTGCCATC+AGG - chr1.2:72889415-72889434 None:intergenic 35.0%
! ATCGATAGAATATCGAGTTG+CGG - chr1.2:72891753-72891772 None:intergenic 35.0%
! CTCACATTGGTAACAATAAG+AGG + chr1.2:72891958-72891977 MS.gene54776:CDS 35.0%
! TACATTACCTACCTGTTTTC+TGG - chr1.2:72889653-72889672 None:intergenic 35.0%
! TATAGGAAGCATAGACAATG+GGG - chr1.2:72890937-72890956 None:intergenic 35.0%
! TATGGTGCTTCTGAAGAAAT+TGG + chr1.2:72889373-72889392 MS.gene54776:CDS 35.0%
! TGTCAATTCCCTTATTTCTC+TGG - chr1.2:72890175-72890194 None:intergenic 35.0%
! TTTGTGTCCATTTTCTGTGT+TGG + chr1.2:72889121-72889140 MS.gene54776:CDS 35.0%
! TTTTACTCTTCTGTGAAGGT+TGG + chr1.2:72891910-72891929 MS.gene54776:intron 35.0%
!! ACGATTATCATGACTTGGTT+GGG + chr1.2:72890347-72890366 MS.gene54776:CDS 35.0%
AAAAGAATAAACGCTTCGCG+GGG - chr1.2:72892012-72892031 None:intergenic 40.0%
AGCTACCAACCATCATCAAT+TGG + chr1.2:72891780-72891799 MS.gene54776:CDS 40.0%
AGGTCATTATGTTCCTCAGT+TGG + chr1.2:72890136-72890155 MS.gene54776:intron 40.0%
AGTGATGCGGTATTGTTACA+AGG - chr1.2:72890544-72890563 None:intergenic 40.0%
ATACACGTCAGAATGCCTTT+CGG - chr1.2:72890716-72890735 None:intergenic 40.0%
CCAAGGATACCAATTGATGA+TGG - chr1.2:72891792-72891811 None:intergenic 40.0%
CCATCATCAATTGGTATCCT+TGG + chr1.2:72891789-72891808 MS.gene54776:CDS 40.0%
CGTTAGTGACACATTGACAT+TGG + chr1.2:72889710-72889729 MS.gene54776:intron 40.0%
CTGTGAATGAACAGAATGGA+AGG + chr1.2:72889248-72889267 MS.gene54776:CDS 40.0%
GACTGACGATTATCATGACT+TGG + chr1.2:72890342-72890361 MS.gene54776:CDS 40.0%
GCTCATGAAGGATTTACTCA+TGG + chr1.2:72889816-72889835 MS.gene54776:intron 40.0%
GGCGGAGTATAAATGCTATA+TGG - chr1.2:72890523-72890542 None:intergenic 40.0%
GTGACTGTGAATGAACAGAA+TGG + chr1.2:72889244-72889263 MS.gene54776:CDS 40.0%
TAAGAAAAACCAACACCAGC+AGG - chr1.2:72889594-72889613 None:intergenic 40.0%
TGGTATCCTTGGTATGATAG+TGG + chr1.2:72891800-72891819 MS.gene54776:CDS 40.0%
TTGACATTATTGAGGGTCAC+TGG + chr1.2:72891396-72891415 MS.gene54776:intron 40.0%
! AACTTATTAACGCTGGTCTC+CGG + chr1.2:72890964-72890983 MS.gene54776:CDS 40.0%
! ACATTTGGTGACCAGAAAAC+AGG + chr1.2:72889639-72889658 MS.gene54776:CDS 40.0%
! TAAACAAGTTGAGCCAACTG+AGG - chr1.2:72890152-72890171 None:intergenic 40.0%
! TCATATGCTCTAGACATCCA+TGG - chr1.2:72890685-72890704 None:intergenic 40.0%
! TCCATCAGTGCAATGTTTTC+AGG + chr1.2:72890459-72890478 MS.gene54776:CDS 40.0%
! TTGAGTTTTACCACGTGTGT+CGG + chr1.2:72889757-72889776 MS.gene54776:intron 40.0%
! TTGGTAACAATAAGAGGTGC+TGG + chr1.2:72891964-72891983 MS.gene54776:CDS 40.0%
!! GACGATTATCATGACTTGGT+TGG + chr1.2:72890346-72890365 MS.gene54776:CDS 40.0%
!! GGATACCAATTGATGATGGT+TGG - chr1.2:72891788-72891807 None:intergenic 40.0%
!! TATTCTGTGATTGGTGCTAC+AGG + chr1.2:72890306-72890325 MS.gene54776:intron 40.0%
!!! CTTTGATATTTTGGCTGCAG+TGG + chr1.2:72891701-72891720 MS.gene54776:intron 40.0%
AATACCGCATCACTCAGAAG+CGG + chr1.2:72890550-72890569 MS.gene54776:CDS 45.0%
ACCTTGCCACTATCATACCA+AGG - chr1.2:72891809-72891828 None:intergenic 45.0%
ATTGCTGGGGAAAGTTATGC+AGG + chr1.2:72889995-72890014 MS.gene54776:CDS 45.0%
CATATGATCCGTGTACCGAA+AGG + chr1.2:72890698-72890717 MS.gene54776:CDS 45.0%
CCATCAGGCCTAATACGAAA+AGG - chr1.2:72889400-72889419 None:intergenic 45.0%
CGCTTCATGCCAATGTAACA+GGG + chr1.2:72890761-72890780 MS.gene54776:CDS 45.0%
GATGCGGTATTGTTACAAGG+CGG - chr1.2:72890541-72890560 None:intergenic 45.0%
GCCTGAAAACATTGCACTGA+TGG - chr1.2:72890463-72890482 None:intergenic 45.0%
GTTTCTTGACTTTGCAGCTG+AGG + chr1.2:72889907-72889926 MS.gene54776:intron 45.0%
TACTCTTCTGTGAAGGTTGG+TGG + chr1.2:72891913-72891932 MS.gene54776:intron 45.0%
TCAGAATGCCTTTCGGTACA+CGG - chr1.2:72890709-72890728 None:intergenic 45.0%
TGAACCGTGGACCCAATTTA+AGG + chr1.2:72889302-72889321 MS.gene54776:CDS 45.0%
TGGTTGGGACATTTGAGTAC+TGG + chr1.2:72890362-72890381 MS.gene54776:CDS 45.0%
TTATGGCTTAATGGTGGTCC+TGG + chr1.2:72889334-72889353 MS.gene54776:CDS 45.0%
! ACTTATTAACGCTGGTCTCC+GGG + chr1.2:72890965-72890984 MS.gene54776:CDS 45.0%
! ATGGCCTTAAATTGGGTCCA+CGG - chr1.2:72889309-72889328 None:intergenic 45.0%
! CAATGTGTCACTAACGTGTC+CGG - chr1.2:72889706-72889725 None:intergenic 45.0%
! CCTTTTCGTATTAGGCCTGA+TGG + chr1.2:72889397-72889416 MS.gene54776:CDS 45.0%
! TTGGTGACCAGAAAACAGGT+AGG + chr1.2:72889643-72889662 MS.gene54776:intron 45.0%
!! GATGATGGTTGGTAGCTTCA+AGG - chr1.2:72891777-72891796 None:intergenic 45.0%
!! TCCTTGGTATGATAGTGGCA+AGG + chr1.2:72891805-72891824 MS.gene54776:CDS 45.0%
!! TTGGGACATTTGAGTACTGG+TGG + chr1.2:72890365-72890384 MS.gene54776:CDS 45.0%
!! TTGGTGCTACAGGTTGGAAA+TGG + chr1.2:72890316-72890335 MS.gene54776:intron 45.0%
!! TTTGAGTACTGGTGGACACA+TGG + chr1.2:72890373-72890392 MS.gene54776:CDS 45.0%
AAATTGGGTCCACGGTTCAG+TGG - chr1.2:72889301-72889320 None:intergenic 50.0%
AGAGTTGCAGTTGCTGAGCA+AGG + chr1.2:72890487-72890506 MS.gene54776:CDS 50.0%
CAACACCAGCAGGAGAATCA+AGG - chr1.2:72889584-72889603 None:intergenic 50.0%
CCAACATTCTTTGGTTGCCC+TGG - chr1.2:72889202-72889221 None:intergenic 50.0%
CCAGGGCAACCAAAGAATGT+TGG + chr1.2:72889199-72889218 MS.gene54776:CDS 50.0%
CGTACCTGAATACCCATACC+CGG - chr1.2:72890986-72891005 None:intergenic 50.0%
CTGTTCCTTGATTCTCCTGC+TGG + chr1.2:72889576-72889595 MS.gene54776:CDS 50.0%
CTTGATTCTCCTGCTGGTGT+TGG + chr1.2:72889582-72889601 MS.gene54776:CDS 50.0%
GCGCTTCATGCCAATGTAAC+AGG + chr1.2:72890760-72890779 MS.gene54776:CDS 50.0%
TCACTCAGAAGCGGCTTGAA+CGG + chr1.2:72890559-72890578 MS.gene54776:CDS 50.0%
TCCAATCACAGTTCGCCATG+TGG - chr1.2:72891610-72891629 None:intergenic 50.0%
TCCACATGGCGAACTGTGAT+TGG + chr1.2:72891606-72891625 MS.gene54776:intron 50.0%
! ATTGAAGCACCACTGAACCG+TGG + chr1.2:72889289-72889308 MS.gene54776:CDS 50.0%
! CAATCGTCCAGAAGTGCAGA+AGG + chr1.2:72890738-72890757 MS.gene54776:CDS 50.0%
! GAATATCGAGTTGCGGTCAG+TGG - chr1.2:72891746-72891765 None:intergenic 50.0%
!! AATAAGAGGTGCTGGACACG+AGG + chr1.2:72891972-72891991 MS.gene54776:CDS 50.0%
!! CTGTGATTGGTGCTACAGGT+TGG + chr1.2:72890310-72890329 MS.gene54776:intron 50.0%
!! CTTCTGTGAAGGTTGGTGGA+TGG + chr1.2:72891917-72891936 MS.gene54776:intron 50.0%
!!! ATGGAAGGGCGCTGTTTTAC+TGG + chr1.2:72889263-72889282 MS.gene54776:CDS 50.0%
CAAGCCGCTTCTGAGTGATG+CGG - chr1.2:72890557-72890576 None:intergenic 55.0%
GTCACTAACGTGTCCGGTGT+TGG - chr1.2:72889700-72889719 None:intergenic 55.0%
GTCTCCGGGTATGGGTATTC+AGG + chr1.2:72890979-72890998 MS.gene54776:CDS 55.0%
TGAAACACCGCCACCAACAC+CGG + chr1.2:72889684-72889703 MS.gene54776:intron 55.0%
! ACTAACGTGTCCGGTGTTGG+TGG - chr1.2:72889697-72889716 None:intergenic 55.0%
! GTTTCGTGTCGGTGGTGCAT+AGG + chr1.2:72889779-72889798 MS.gene54776:intron 55.0%
! TAACGCTGGTCTCCGGGTAT+GGG + chr1.2:72890971-72890990 MS.gene54776:CDS 55.0%
! TGAAGCGCCTTCTGCACTTC+TGG - chr1.2:72890748-72890767 None:intergenic 55.0%
! TTAACGCTGGTCTCCGGGTA+TGG + chr1.2:72890970-72890989 MS.gene54776:CDS 55.0%
!! CACGTGTGTCGGTTTCGTGT+CGG + chr1.2:72889768-72889787 MS.gene54776:intron 55.0%
CGACACGAAACCGACACACG+TGG - chr1.2:72889770-72889789 None:intergenic 60.0%
GCTTCGCGGGGCTTATGAAG+AGG - chr1.2:72892000-72892019 None:intergenic 60.0%
!! AACGTGTCCGGTGTTGGTGG+CGG - chr1.2:72889694-72889713 None:intergenic 60.0%
!! GTGTGTCGGTTTCGTGTCGG+TGG + chr1.2:72889771-72889790 MS.gene54776:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72889091 72892074 72889091 ID=MS.gene54776
chr1.2 mRNA 72889091 72892074 72889091 ID=MS.gene54776.t1;Parent=MS.gene54776
chr1.2 exon 72889091 72889457 72889091 ID=MS.gene54776.t1.exon1;Parent=MS.gene54776.t1
chr1.2 CDS 72889091 72889457 72889091 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72889565 72889660 72889565 ID=MS.gene54776.t1.exon2;Parent=MS.gene54776.t1
chr1.2 CDS 72889565 72889660 72889565 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72889924 72890016 72889924 ID=MS.gene54776.t1.exon3;Parent=MS.gene54776.t1
chr1.2 CDS 72889924 72890016 72889924 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72890138 72890223 72890138 ID=MS.gene54776.t1.exon4;Parent=MS.gene54776.t1
chr1.2 CDS 72890138 72890223 72890138 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72890328 72890588 72890328 ID=MS.gene54776.t1.exon5;Parent=MS.gene54776.t1
chr1.2 CDS 72890328 72890588 72890328 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72890682 72890809 72890682 ID=MS.gene54776.t1.exon6;Parent=MS.gene54776.t1
chr1.2 CDS 72890682 72890809 72890682 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72890905 72891000 72890905 ID=MS.gene54776.t1.exon7;Parent=MS.gene54776.t1
chr1.2 CDS 72890905 72891000 72890905 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72891721 72891826 72891721 ID=MS.gene54776.t1.exon8;Parent=MS.gene54776.t1
chr1.2 CDS 72891721 72891826 72891721 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
chr1.2 exon 72891928 72892074 72891928 ID=MS.gene54776.t1.exon9;Parent=MS.gene54776.t1
chr1.2 CDS 72891928 72892074 72891928 ID=cds.MS.gene54776.t1;Parent=MS.gene54776.t1
Gene Sequence

>MS.gene54776

ATGGGTTATTCCATATTCTATATTGTTTTGTTTGTGTCCATTTTCTGTGTTGGAATTTCATTGGCTTCTTCTATAGAAGATCAAAAGAGAGATAAGATTAAGCAGTTACCAGGGCAACCAAAGAATGTTGGATTTGAACAGTATTCAGGCTATGTGACTGTGAATGAACAGAATGGAAGGGCGCTGTTTTACTGGTTAATTGAAGCACCACTGAACCGTGGACCCAATTTAAGGCCATTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCAATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCGTATTAGGCCTGATGGCAAATCACTTTTCTTGAATCGTTATGCTTGGAACAATTGTAAGTCCGATTCTGAGATTCAGTCTTTGTTGCTTCGATTCGTACACAATTTTTTTTCTTCAATTTTTGACAATATTTATGCCTATTTATTATTTTGGATGTTGCAGTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCTTATTGTAATAAAACAACAGATCTGTACACATTTGGTGACCAGAAAACAGGTAGGTAATGTAGTTTGTAACTATGAAACACCGCCACCAACACCGGACACGTTAGTGACACATTGACATTGGTAACAATTTGAGAGAATAGAATAATTGAGTTTTACCACGTGTGTCGGTTTCGTGTCGGTGGTGCATAGGTTTGTAATGATCATGCTCATGAAGGATTTACTCATGGTGCCAGCTTTGTTTTGCTTTAGCAAAGAGATTTGACACGTTAATAACTTTATTGCATATGAGATCTGAGTTTCTTGACTTTGCAGCTGAGGATGCATATATTTTTCTTGTAAAGTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTGAATCAAAATCTGATATATATCAGTTTTCTACTTTGGTGCCATACTTACTTATCAATTGAATGAATGCTTTGTACAATGAAGAATTATTCAATTTCTTGAAAAATTGAATGATTTTCAGGTCATTATGTTCCTCAGTTGGCTCAACTTGTTTACCAGAGAAATAAGGGAATTGACAAACCAGTTATCAATTTTAAGGGATTTATGGTAAGATTGTTAGGTTCATGTTTACATAAACACAATTCAATGCAACACGACCACCTTATGATAATCATATAACGAGTTTGATTATTCTGTGATTGGTGCTACAGGTTGGAAATGGTGTGACTGACGATTATCATGACTTGGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACATATAGGATTCTAAGAATTGCTTGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTTTTCAGGCTCTTAGAGTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACTCCGCCTTGTAACAATACCGCATCACTCAGAAGCGGCTTGAACGGTCGTTATGTAAGCCTATATGCTATCGATTTATTGAATGGTTTATCAATTGTGAATGCCATCAACTGTGTTTAATTTGTTTTGATCTTATAAAACAAACAGCCATGGATGTCTAGAGCATATGATCCGTGTACCGAAAGGCATTCTGACGTGTATTTCAATCGTCCAGAAGTGCAGAAGGCGCTTCATGCCAATGTAACAGGGATTCCATATATTTGGAAGACATGCAGGTATATTATTTTCAATTAATGTTGAACACGTTCTATTGAGGTCTATTCTATCAGAATTTTGATTTAAAAGGTTTCTTATTTTCATTTCTTGACAGTGATATTGTTGGGAATTATTGGACTGATTCCCCATTGTCTATGCTTCCTATATATCATGAACTTATTAACGCTGGTCTCCGGGTATGGGTATTCAGGTACGAACCTTAACTATATACCAAATACATGTACTTTTTTGCTTATATTTATCGGAAGAAGCGAAAATTCACATAAAATGATAAAGAAAGATATATATCTCAACACTTATGAACATAATTCAACAGTTGACATCTGAATACATCCATGGATAGTATGTGATATCAACTTTTGGTAGATTGACATGTCTTACATTATCTTCTAATGTATTTTGCTTACTTTAATAGCGTCAAATCCCATTACTTTTGTTGTGTTTATTCTTTAATTCTTGAATAGTAGATTTTTATTTCAGCTTTTCAAGCACAGTGCCAAAAAAATATCTTTGTTCCTTAATCATTTGAGTGTCACTTATCACGTTTTAACAATCCCATCCATTTCATATTTCTCTAAATGCTCTTTGACATTATTGAGGGTCACTGGCTCAGCATAATTGCACTTCAATTTGTACTAGTAACATTCGGGCTTAGTTGTTCCTTTCATTACCTCCATATTCTGTATAGATCAATGATTATGGACTGACAACATAATTTATGTTAGACATACATCCAATCAAATCACATCATAATATCACTTTATCATGTTAGTTTCTAAATTATCTCAATAAATATCCACATGGCGAACTGTGATTGGATACATGTGTAATTTTTTTTTACACATGCAAATTAAATCTTATCTGTAATCAAGAATTGGAACTCTTCTTAACTTTGATATTTTGGCTGCAGTGGAGACACTGATTCTGTAGTTCCACTGACCGCAACTCGATATTCTATCGATGCCTTGAAGCTACCAACCATCATCAATTGGTATCCTTGGTATGATAGTGGCAAGGTTAGTGCTAATTAACTTCTATAAGTAAAAACTGTTCAAGTTTATACTAATTTGGTATGAATAGCAGCAAGTTTGATACTAAATTTTACTCTTCTGTGAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGGCTCACATTGGTAACAATAAGAGGTGCTGGACACGAGGTTCCTCTTCATAAGCCCCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGGACATGCCATCATCAAGCTAA

Protein sequence

>MS.gene54776.t1

MGYSIFYIVLFVSIFCVGISLASSIEDQKRDKIKQLPGQPKNVGFEQYSGYVTVNEQNGRALFYWLIEAPLNRGPNLRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLFLNRYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDQKTAEDAYIFLVKWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYQRNKGIDKPVINFKGFMVGNGVTDDYHDLVGTFEYWWTHGLISDSTYRILRIACDFGSSQHPSVQCFQALRVAVAEQGNIDPYSIYTPPCNNTASLRSGLNGRYPWMSRAYDPCTERHSDVYFNRPEVQKALHANVTGIPYIWKTCSDIVGNYWTDSPLSMLPIYHELINAGLRVWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTIRGAGHEVPLHKPREAFILFRSFLENKDMPSSS