AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34019


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34019.t1 MTR_1g095560 97.386 459 12 0 1 459 1 459 0.0 932
MS.gene34019.t1 MTR_1g095560 91.039 491 12 1 1 459 1 491 0.0 918
MS.gene34019.t1 MTR_1g095540 84.498 458 71 0 1 458 1 458 0.0 818
MS.gene34019.t1 MTR_2g062990 54.466 459 204 3 3 457 6 463 0.0 543
MS.gene34019.t1 MTR_2g063000 54.725 455 197 4 8 457 14 464 0.0 533
MS.gene34019.t1 MTR_2g062980 53.896 462 202 5 3 457 6 463 0.0 531
MS.gene34019.t1 MTR_7g013790 55.098 461 192 7 7 457 10 465 0.0 523
MS.gene34019.t1 MTR_2g081620 53.761 452 206 3 8 457 14 464 0.0 522
MS.gene34019.t1 MTR_2g063000 49.670 455 189 5 8 457 14 433 1.54e-162 466
MS.gene34019.t1 MTR_3g079560 51.620 432 196 7 28 458 73 492 1.39e-156 453
MS.gene34019.t1 MTR_3g034290 49.535 430 207 5 28 456 70 490 2.17e-156 452
MS.gene34019.t1 MTR_3g079570 52.235 425 191 6 26 450 72 484 3.01e-156 452
MS.gene34019.t1 MTR_3g079600 52.347 426 189 6 28 450 71 485 4.29e-155 449
MS.gene34019.t1 MTR_4g075150 48.922 464 224 9 1 456 3 461 3.46e-154 446
MS.gene34019.t1 MTR_4g075150 48.712 466 224 9 1 456 3 463 9.24e-154 445
MS.gene34019.t1 MTR_3g079620 50.114 437 197 7 31 458 76 500 7.47e-153 444
MS.gene34019.t1 MTR_3g079590 51.429 420 193 6 31 450 76 484 2.71e-150 437
MS.gene34019.t1 MTR_1g021010 50.459 436 199 8 17 450 60 480 2.72e-148 432
MS.gene34019.t1 MTR_0003s0560 49.188 431 207 7 28 457 69 488 9.32e-148 431
MS.gene34019.t1 MTR_1g020090 49.428 437 199 7 19 450 72 491 1.26e-147 431
MS.gene34019.t1 MTR_3g079630 48.853 436 198 8 26 450 71 492 8.24e-144 421
MS.gene34019.t1 MTR_1g021020 47.816 435 211 6 17 450 62 481 1.41e-141 415
MS.gene34019.t1 MTR_4g122950 44.538 476 240 7 5 459 8 480 1.41e-141 414
MS.gene34019.t1 MTR_4g089155 47.072 444 219 6 27 458 48 487 3.63e-141 414
MS.gene34019.t1 MTR_2g012860 44.538 476 235 7 6 457 4 474 8.28e-141 412
MS.gene34019.t1 MTR_4g122960 45.359 474 237 8 5 459 8 478 1.49e-139 409
MS.gene34019.t1 MTR_2g012850 44.658 468 242 8 3 458 5 467 7.71e-137 402
MS.gene34019.t1 MTR_3g034290 50.000 348 165 4 28 375 70 408 8.19e-126 371
MS.gene34019.t1 MTR_8g099930 40.086 464 253 11 12 458 9 464 6.45e-116 348
MS.gene34019.t1 MTR_2g449850 42.438 443 231 9 28 458 34 464 2.03e-115 347
MS.gene34019.t1 MTR_3g090130 42.117 463 250 10 6 459 6 459 4.88e-115 346
MS.gene34019.t1 MTR_5g072570 40.725 469 258 9 3 459 4 464 1.87e-113 342
MS.gene34019.t1 MTR_3g498755 40.000 440 243 10 31 456 13 445 1.98e-112 338
MS.gene34019.t1 MTR_3g434850 41.290 465 241 12 5 457 11 455 2.92e-111 336
MS.gene34019.t1 MTR_7g021130 40.774 439 237 11 31 456 29 457 1.91e-109 331
MS.gene34019.t1 MTR_3g090150 40.091 439 251 8 30 459 31 466 1.62e-105 322
MS.gene34019.t1 MTR_1g040370 38.799 433 216 9 29 456 27 415 1.63e-101 310
MS.gene34019.t1 MTR_0003s0560 50.936 267 116 6 28 289 69 325 1.46e-87 271
MS.gene34019.t1 MTR_8g011350 34.990 483 254 12 19 450 17 490 3.66e-82 262
MS.gene34019.t1 MTR_7g080180 34.320 507 257 18 5 455 12 498 2.90e-75 244
MS.gene34019.t1 MTR_7g051430 32.727 495 275 13 5 450 5 490 3.48e-73 239
MS.gene34019.t1 MTR_8g011350 34.056 461 244 12 19 428 17 468 4.84e-72 235
MS.gene34019.t1 MTR_1g102130 33.778 450 235 15 26 456 85 490 8.06e-72 235
MS.gene34019.t1 MTR_7g080180 34.325 437 224 16 33 414 28 456 6.55e-62 208
MS.gene34019.t1 MTR_7g051430 31.981 419 228 12 5 375 5 414 7.67e-54 186
MS.gene34019.t1 MTR_2g018590 29.140 477 299 15 2 455 9 469 1.95e-53 186
MS.gene34019.t1 MTR_4g021490 30.562 445 269 14 32 452 39 467 3.28e-53 186
MS.gene34019.t1 MTR_4g021520 30.856 444 269 14 32 452 39 467 4.17e-53 185
MS.gene34019.t1 MTR_4g021535 30.149 471 293 15 4 452 7 463 4.82e-53 185
MS.gene34019.t1 MTR_4g021510 31.306 444 267 15 32 452 38 466 1.61e-52 184
MS.gene34019.t1 MTR_2g018600 29.399 466 285 16 15 455 23 469 1.84e-52 183
MS.gene34019.t1 MTR_3g100420 30.063 479 295 14 8 455 27 496 2.11e-52 184
MS.gene34019.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 9.57e-52 187
MS.gene34019.t1 MTR_4g021500 30.404 421 257 14 45 452 487 884 1.38e-45 170
MS.gene34019.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 1.19e-51 187
MS.gene34019.t1 MTR_4g021500 29.425 435 261 13 45 452 487 902 2.13e-45 169
MS.gene34019.t1 MTR_3g045770 28.017 464 298 12 1 447 2 446 9.55e-51 178
MS.gene34019.t1 MTR_4g021530 29.614 466 291 16 8 452 18 467 1.34e-50 178
MS.gene34019.t1 MTR_2g018630 28.416 461 293 14 13 455 24 465 3.36e-47 169
MS.gene34019.t1 MTR_4g021520 31.111 405 242 13 32 414 39 428 3.52e-44 160
MS.gene34019.t1 MTR_4g057585 28.833 437 256 13 38 451 87 491 7.88e-44 160
MS.gene34019.t1 MTR_4g084710 29.314 423 255 15 49 455 45 439 1.36e-42 156
MS.gene34019.t1 MTR_4g057595 28.271 428 252 13 47 451 97 492 7.59e-42 155
MS.gene34019.t1 MTR_2g095730 28.741 421 267 14 47 453 94 495 8.57e-42 155
MS.gene34019.t1 MTR_2g095750 27.166 427 263 13 47 453 100 498 3.12e-41 154
MS.gene34019.t1 MTR_1g050545 27.700 426 254 14 45 447 81 475 1.51e-40 152
MS.gene34019.t1 MTR_0075s0010 30.789 380 190 16 30 402 5 318 5.83e-39 144
MS.gene34019.t1 MTR_4g057600 27.230 426 263 14 47 453 95 492 2.13e-38 145
MS.gene34019.t1 MTR_1g094155 26.730 419 258 13 49 447 92 481 5.07e-38 145
MS.gene34019.t1 MTR_4g057570 26.457 446 275 12 32 453 74 490 5.43e-38 144
MS.gene34019.t1 MTR_5g097180 27.316 421 266 13 49 455 43 437 1.03e-37 143
MS.gene34019.t1 MTR_2g009200 26.350 463 268 14 19 450 14 434 2.41e-34 134
MS.gene34019.t1 MTR_4g021535 26.752 471 262 17 4 452 7 416 2.70e-34 133
MS.gene34019.t1 MTR_2g018630 26.257 358 240 11 112 455 13 360 1.15e-30 122
MS.gene34019.t1 MTR_2g095710 27.427 412 243 16 62 453 106 481 5.32e-30 122
MS.gene34019.t1 MTR_1g051175 38.938 113 61 4 39 150 18 123 3.68e-16 79.0
MS.gene34019.t1 MTR_4g056520 30.968 155 97 4 41 193 27 173 2.11e-14 75.5
MS.gene34019.t1 MTR_4g122970 37.349 83 42 2 8 82 7 87 3.96e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34019.t1 AT3G07990 76.092 435 104 0 22 456 23 457 0.0 713
MS.gene34019.t1 AT2G35780 70.481 437 123 3 22 456 19 451 0.0 653
MS.gene34019.t1 AT4G30610 55.769 468 193 6 1 458 1 464 0.0 541
MS.gene34019.t1 AT4G30810 58.237 431 175 2 23 450 28 456 0.0 539
MS.gene34019.t1 AT2G24010 55.862 435 187 4 25 458 23 453 0.0 515
MS.gene34019.t1 AT2G24000 55.481 447 186 6 22 458 20 463 0.0 515
MS.gene34019.t1 AT3G02110 54.911 448 182 7 26 458 31 473 1.12e-179 511
MS.gene34019.t1 AT2G24010 53.778 450 188 5 25 458 23 468 2.42e-176 502
MS.gene34019.t1 AT2G35770 54.248 459 201 5 3 458 8 460 2.52e-175 499
MS.gene34019.t1 AT2G24010 51.392 467 182 6 33 458 2 464 2.06e-168 482
MS.gene34019.t1 AT5G23210 50.330 455 196 8 28 457 47 496 6.43e-153 444
MS.gene34019.t1 AT3G63470 49.315 438 202 9 28 459 77 500 2.95e-152 442
MS.gene34019.t1 AT3G17180 49.111 450 210 8 25 458 31 477 1.59e-145 424
MS.gene34019.t1 AT1G61130 47.210 466 233 8 1 458 2 462 2.84e-143 418
MS.gene34019.t1 AT5G08260 44.025 477 236 10 5 457 8 477 2.14e-138 406
MS.gene34019.t1 AT1G11080 47.020 453 219 6 24 458 42 491 5.36e-135 398
MS.gene34019.t1 AT1G11080 47.020 453 219 6 24 458 42 491 6.80e-135 398
MS.gene34019.t1 AT2G24010 53.482 359 147 5 33 375 2 356 3.64e-134 391
MS.gene34019.t1 AT3G52020 46.789 436 217 11 26 456 73 498 6.40e-134 395
MS.gene34019.t1 AT5G23210 49.512 410 177 8 28 412 47 451 4.90e-132 389
MS.gene34019.t1 AT4G15100 43.633 479 244 8 3 458 8 483 1.52e-128 381
MS.gene34019.t1 AT5G23210 48.387 403 181 6 80 457 1 401 6.74e-127 374
MS.gene34019.t1 AT5G23210 48.608 395 176 6 88 457 8 400 1.20e-125 371
MS.gene34019.t1 AT3G17180 46.944 409 199 7 25 418 31 436 4.62e-125 370
MS.gene34019.t1 AT2G05850 41.163 447 246 9 19 458 50 486 3.19e-121 362
MS.gene34019.t1 AT3G52000 43.578 436 230 11 28 459 59 482 7.13e-119 356
MS.gene34019.t1 AT3G52010 41.163 447 243 11 21 459 53 487 4.41e-117 352
MS.gene34019.t1 AT2G33530 43.527 448 232 11 22 456 23 462 1.13e-116 350
MS.gene34019.t1 AT1G43780 41.798 445 238 10 30 459 35 473 1.44e-112 340
MS.gene34019.t1 AT2G12480 40.230 435 250 6 29 457 28 458 3.53e-112 339
MS.gene34019.t1 AT5G42240 40.716 447 241 9 29 459 29 467 2.06e-109 332
MS.gene34019.t1 AT1G28110 40.868 438 238 10 31 456 30 458 3.50e-109 331
MS.gene34019.t1 AT1G28110 40.868 438 238 10 31 456 30 458 3.50e-109 331
MS.gene34019.t1 AT2G24000 41.834 447 184 9 22 458 20 400 4.50e-107 323
MS.gene34019.t1 AT2G12480 38.710 434 234 7 29 457 28 434 1.03e-104 319
MS.gene34019.t1 AT5G23210 47.293 351 158 6 88 413 8 356 1.09e-104 316
MS.gene34019.t1 AT5G42230 38.702 447 250 9 29 459 25 463 2.88e-104 318
MS.gene34019.t1 AT5G42230 38.702 447 250 9 29 459 25 463 2.88e-104 318
MS.gene34019.t1 AT2G12480 38.710 434 232 7 29 457 28 432 2.54e-103 315
MS.gene34019.t1 AT2G12480 38.621 435 232 8 29 457 28 433 1.55e-101 310
MS.gene34019.t1 AT4G12910 34.949 495 268 11 9 455 9 497 1.03e-82 264
MS.gene34019.t1 AT3G25420 34.553 492 266 13 14 455 9 494 1.95e-82 263
MS.gene34019.t1 AT3G56540 61.667 180 65 3 10 189 57 232 9.24e-71 225
MS.gene34019.t1 AT4G12910 33.775 453 247 10 9 414 9 455 8.12e-69 226
MS.gene34019.t1 AT2G22990 32.102 433 262 13 33 455 23 433 1.07e-59 202
MS.gene34019.t1 AT2G22920 31.409 433 265 13 33 455 25 435 5.28e-59 200
MS.gene34019.t1 AT2G22970 32.102 433 260 14 33 455 25 433 1.01e-58 199
MS.gene34019.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.56e-54 187
MS.gene34019.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.78e-54 187
MS.gene34019.t1 AT2G22990 32.187 407 245 12 33 429 23 408 1.30e-53 185
MS.gene34019.t1 AT2G22990 32.108 408 246 12 33 430 23 409 1.32e-53 186
MS.gene34019.t1 AT3G12203 30.621 467 282 15 1 455 1 437 5.59e-53 184
MS.gene34019.t1 AT3G12203 31.178 433 263 13 33 455 9 416 1.31e-52 182
MS.gene34019.t1 AT2G23000 28.637 433 279 12 33 455 25 437 1.49e-52 183
MS.gene34019.t1 AT2G23000 28.637 433 279 12 33 455 25 437 1.49e-52 183
MS.gene34019.t1 AT1G73290 30.594 438 258 14 33 455 32 438 2.96e-52 182
MS.gene34019.t1 AT2G22970 31.340 418 254 13 33 440 25 419 3.41e-52 182
MS.gene34019.t1 AT3G10450 29.930 431 272 10 33 455 29 437 5.70e-52 181
MS.gene34019.t1 AT1G73280 30.979 439 257 14 33 455 33 441 7.82e-52 181
MS.gene34019.t1 AT2G22970 31.618 408 246 13 33 430 25 409 1.48e-51 180
MS.gene34019.t1 AT2G23010 28.761 452 290 13 15 455 7 437 1.93e-51 180
MS.gene34019.t1 AT2G22990 30.485 433 260 14 33 455 23 424 4.50e-51 179
MS.gene34019.t1 AT2G23010 28.540 452 291 13 15 455 7 437 8.87e-51 178
MS.gene34019.t1 AT2G22980 30.324 432 255 15 33 450 26 425 1.81e-50 177
MS.gene34019.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.56e-50 177
MS.gene34019.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.56e-50 177
MS.gene34019.t1 AT3G12220 30.963 436 257 14 33 453 27 433 1.09e-49 175
MS.gene34019.t1 AT2G22920 31.378 392 239 11 33 415 25 395 1.24e-49 174
MS.gene34019.t1 AT5G36180 30.137 438 262 14 33 455 33 441 1.34e-48 172
MS.gene34019.t1 AT3G10450 29.540 413 261 10 51 455 4 394 3.51e-48 170
MS.gene34019.t1 AT1G33540 30.425 447 276 14 33 455 29 464 9.08e-48 171
MS.gene34019.t1 AT3G12203 30.941 404 244 13 62 455 1 379 1.37e-47 168
MS.gene34019.t1 AT5G09640 27.686 484 292 13 6 455 6 465 1.65e-47 170
MS.gene34019.t1 AT3G12230 28.868 433 274 11 33 455 27 435 1.36e-46 167
MS.gene34019.t1 AT5G22980 28.605 423 264 14 45 453 96 494 1.68e-46 168
MS.gene34019.t1 AT3G12240 29.062 437 268 15 33 455 28 436 1.92e-46 166
MS.gene34019.t1 AT3G12220 30.383 418 247 14 51 453 15 403 5.76e-46 164
MS.gene34019.t1 AT1G33540 30.303 429 264 14 51 455 4 421 7.89e-46 164
MS.gene34019.t1 AT2G22980 29.384 422 253 14 33 440 26 416 3.00e-45 163
MS.gene34019.t1 AT1G73310 28.704 432 276 12 33 455 33 441 3.62e-45 163
MS.gene34019.t1 AT3G10450 29.557 406 257 9 33 430 29 413 6.19e-45 162
MS.gene34019.t1 AT2G22980 29.854 412 244 14 33 430 26 406 7.23e-45 162
MS.gene34019.t1 AT1G73290 30.730 397 231 12 33 415 32 398 2.43e-44 160
MS.gene34019.t1 AT3G45010 27.674 430 275 11 38 453 92 499 3.37e-44 162
MS.gene34019.t1 AT3G10410 28.111 434 264 15 38 452 90 494 4.23e-43 159
MS.gene34019.t1 AT2G22990 31.065 338 209 10 123 455 1 319 1.55e-41 150
MS.gene34019.t1 AT3G10450 29.124 388 246 9 51 430 4 370 3.44e-41 151
MS.gene34019.t1 AT2G22990 30.769 338 210 10 123 455 1 319 5.71e-41 149
MS.gene34019.t1 AT2G22920 32.686 309 179 10 33 332 25 313 2.09e-40 147
MS.gene34019.t1 AT1G73310 29.032 403 256 10 33 427 33 413 9.17e-40 148
MS.gene34019.t1 AT2G22970 32.686 309 178 10 33 332 25 312 4.62e-39 144
MS.gene34019.t1 AT3G12220 29.767 430 218 16 33 453 27 381 3.30e-38 143
MS.gene34019.t1 AT1G73280 33.457 269 161 7 33 287 33 297 1.33e-37 141
MS.gene34019.t1 AT1G73290 33.086 269 160 8 33 287 32 294 7.41e-37 137
MS.gene34019.t1 AT1G73280 28.451 355 216 11 112 455 12 339 5.74e-34 130
MS.gene34019.t1 AT2G22980 32.090 268 164 7 33 291 26 284 2.05e-33 129
MS.gene34019.t1 AT1G15000 28.103 427 264 13 49 459 37 436 1.07e-32 129
MS.gene34019.t1 AT1G73280 28.446 341 206 11 126 455 1 314 2.60e-31 122
MS.gene34019.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.68e-31 122
MS.gene34019.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.68e-31 122
MS.gene34019.t1 AT2G22980 27.760 317 192 11 123 430 1 289 8.47e-27 109
MS.gene34019.t1 AT5G36180 27.356 329 204 10 112 430 12 315 2.27e-25 106
MS.gene34019.t1 AT5G22960 31.188 202 101 5 11 211 10 174 1.22e-24 100
MS.gene34019.t1 AT5G36180 27.089 347 207 11 112 437 12 333 2.29e-24 103
MS.gene34019.t1 AT1G73310 26.646 319 212 7 112 427 12 311 2.20e-23 100
MS.gene34019.t1 AT2G22920 26.838 272 176 8 189 455 3 256 3.76e-23 98.6
MS.gene34019.t1 AT2G27920 23.656 465 297 21 9 439 5 445 5.15e-16 80.5
MS.gene34019.t1 AT2G22960 30.147 136 90 4 321 455 53 184 1.93e-12 66.2

Find 106 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAACTAATGGCCTTAAAT+TGG 0.173728 1.4:+74227107 None:intergenic
TAACAGGGATTCCATATATT+TGG 0.181948 1.4:-74225645 MS.gene34019:CDS
GTGATATTGTTGGGAATTAT+TGG 0.185000 1.4:-74225517 MS.gene34019:CDS
ACTTGTTTACCAGAGAAATA+AGG 0.220874 1.4:-74226258 MS.gene34019:CDS
TGAAATTCCAACACAGAAAA+TGG 0.225573 1.4:+74227293 None:intergenic
GGTTGTTCTTCAATTGCTTA+TGG 0.253357 1.4:-74227066 MS.gene34019:CDS
TGTTCAAATCCAACATTCTT+TGG 0.267824 1.4:+74227213 None:intergenic
CTGCATGTCTTCCAAATATA+TGG 0.277840 1.4:+74225634 None:intergenic
TGAAGCGCCTTCTGCACTTC+TGG 0.279971 1.4:+74225676 None:intergenic
GTTGGATTTGAACAGTATTC+AGG 0.287775 1.4:-74227204 MS.gene34019:CDS
AAACAAAACAATATAGAATA+TGG 0.298366 1.4:+74227320 None:intergenic
TGAACCGTGGACCCAATTTA+AGG 0.299323 1.4:-74227119 MS.gene34019:CDS
CTAAGAATTGCTTGTGACTT+TGG 0.299740 1.4:-74225997 MS.gene34019:CDS
GCGCTTCATGCCAATGTAAC+AGG 0.306670 1.4:-74225661 MS.gene34019:CDS
TATGGTGCTTCTGAAGAAAT+TGG 0.325012 1.4:-74227048 MS.gene34019:CDS
GTCTCCGGGTATGGGTATTC+AGG 0.330012 1.4:-74225442 MS.gene34019:intron
TTTCTGTGTTGGAATTTCAT+TGG 0.334125 1.4:-74227289 MS.gene34019:CDS
AATCCCTTAAAATTGATAAC+TGG 0.337875 1.4:+74226224 None:intergenic
TGTCAATTCCCTTATTTCTC+TGG 0.354954 1.4:+74226249 None:intergenic
CATAGAGAATTCTACATTGC+TGG 0.368294 1.4:-74226441 MS.gene34019:CDS
AACTTATTAACGCTGGTCTC+CGG 0.369243 1.4:-74225457 MS.gene34019:CDS
TTAACGCTGGTCTCCGGGTA+TGG 0.373121 1.4:-74225451 MS.gene34019:CDS
CTTGTTTACCAGAGAAATAA+GGG 0.385746 1.4:-74226257 MS.gene34019:CDS
GGATGGAGTCAAGTTTATAA+AGG 0.388461 1.4:-74224487 MS.gene34019:CDS
GGCGGAGTATAAATGCTATA+TGG 0.395551 1.4:+74225901 None:intergenic
CTGTTCCTTGATTCTCCTGC+TGG 0.401847 1.4:-74226845 MS.gene34019:CDS
CTTGATTCTCCTGCTGGTGT+TGG 0.404698 1.4:-74226839 MS.gene34019:CDS
TGATTTCAGATTCTACATAT+AGG 0.409759 1.4:-74226023 MS.gene34019:CDS
TTCTTGACAGTGATATTGTT+GGG 0.410531 1.4:-74225526 MS.gene34019:intron
TACTCTTCTGTGAAGGTTGG+TGG 0.412687 1.4:-74224508 MS.gene34019:intron
AAAACTAATGGCCTTAAATT+GGG 0.416290 1.4:+74227108 None:intergenic
TTAATAAGTTCATGATATAT+AGG 0.416930 1.4:+74225470 None:intergenic
CCATCATCAATTGGTATCCT+TGG 0.423024 1.4:-74224632 MS.gene34019:CDS
AAGAAAAGTGATTTGCCATC+AGG 0.425397 1.4:+74227009 None:intergenic
ACGATTATCATGACTTGGTT+GGG 0.439458 1.4:-74226074 MS.gene34019:CDS
TTATGGCTTAATGGTGGTCC+TGG 0.448568 1.4:-74227087 MS.gene34019:CDS
GATGATGGTTGGTAGCTTCA+AGG 0.449314 1.4:+74224647 None:intergenic
ACAACAGATCTGTACACATT+TGG 0.450890 1.4:-74226797 MS.gene34019:CDS
TTTCTTGACAGTGATATTGT+TGG 0.454235 1.4:-74225527 MS.gene34019:intron
GACGATTATCATGACTTGGT+TGG 0.455357 1.4:-74226075 MS.gene34019:CDS
CCAACATTCTTTGGTTGCCC+TGG 0.461852 1.4:+74227222 None:intergenic
CCATTAAGCCATAAAACTAA+TGG 0.465147 1.4:+74227096 None:intergenic
TGGTTGGGACATTTGAGTAC+TGG 0.468313 1.4:-74226059 MS.gene34019:CDS
ACATTTGGTGACCAGAAAAC+AGG 0.468417 1.4:-74226782 MS.gene34019:intron
ATATAGGAAGCATAGACAAT+GGG 0.471053 1.4:+74225486 None:intergenic
CATATATTTGGAAGACATGC+AGG 0.472543 1.4:-74225633 MS.gene34019:intron
CTCACATTGGTAACAATAAG+AGG 0.473526 1.4:-74224463 MS.gene34019:CDS
ATAGAGAATTCTACATTGCT+GGG 0.479532 1.4:-74226440 MS.gene34019:CDS
GCTTCTCATTAGCTTGATGA+TGG 0.483315 1.4:+74224361 None:intergenic
AGCTACCAACCATCATCAAT+TGG 0.485261 1.4:-74224641 MS.gene34019:CDS
ATATGGAATCCCTGTTACAT+TGG 0.488606 1.4:+74225651 None:intergenic
GCCTGAAAACATTGCACTGA+TGG 0.488616 1.4:+74225961 None:intergenic
ACTTATTAACGCTGGTCTCC+GGG 0.492860 1.4:-74225456 MS.gene34019:CDS
TAACGCTGGTCTCCGGGTAT+GGG 0.495844 1.4:-74225450 MS.gene34019:CDS
CAACACCAGCAGGAGAATCA+AGG 0.496627 1.4:+74226840 None:intergenic
GATGGAGTCAAGTTTATAAA+GGG 0.496669 1.4:-74224486 MS.gene34019:CDS
AGGTCATTATGTTCCTCAGT+TGG 0.498140 1.4:-74226285 MS.gene34019:CDS
GATAAGATTAAGCAGTTACC+AGG 0.504649 1.4:-74227240 MS.gene34019:CDS
TGGTATCCTTGGTATGATAG+TGG 0.505825 1.4:-74224621 MS.gene34019:CDS
TTGGTAACAATAAGAGGTGC+TGG 0.519871 1.4:-74224457 MS.gene34019:CDS
GAATATCGAGTTGCGGTCAG+TGG 0.520379 1.4:+74224678 None:intergenic
TAGATCATTCTTGGAGAACA+AGG 0.525636 1.4:-74224389 MS.gene34019:CDS
CCAGGGCAACCAAAGAATGT+TGG 0.526279 1.4:-74227222 MS.gene34019:CDS
CTTCTGTGAAGGTTGGTGGA+TGG 0.542653 1.4:-74224504 MS.gene34019:intron
CCATCAGGCCTAATACGAAA+AGG 0.545705 1.4:+74227024 None:intergenic
ATACACGTCAGAATGCCTTT+CGG 0.549353 1.4:+74225708 None:intergenic
TTGGTGCTACAGGTTGGAAA+TGG 0.551086 1.4:-74226105 MS.gene34019:intron
TCACTCAGAAGCGGCTTGAA+CGG 0.556715 1.4:-74225862 MS.gene34019:CDS
ATTGCTGGGGAAAGTTATGC+AGG 0.557240 1.4:-74226426 MS.gene34019:intron
GGATACCAATTGATGATGGT+TGG 0.557745 1.4:+74224636 None:intergenic
TCAGAATGCCTTTCGGTACA+CGG 0.563005 1.4:+74225715 None:intergenic
CCAAGGATACCAATTGATGA+TGG 0.563122 1.4:+74224632 None:intergenic
AGAGTTGCAGTTGCTGAGCA+AGG 0.568738 1.4:-74225934 MS.gene34019:CDS
CGCTTCATGCCAATGTAACA+GGG 0.570208 1.4:-74225660 MS.gene34019:CDS
GACTGACGATTATCATGACT+TGG 0.578942 1.4:-74226079 MS.gene34019:CDS
TTTGAGTACTGGTGGACACA+TGG 0.597648 1.4:-74226048 MS.gene34019:CDS
AGTGATGCGGTATTGTTACA+AGG 0.603572 1.4:+74225880 None:intergenic
AAATTGGGTCCACGGTTCAG+TGG 0.604072 1.4:+74227123 None:intergenic
CTGTGAATGAACAGAATGGA+AGG 0.605445 1.4:-74227173 MS.gene34019:CDS
TCATATGCTCTAGACATCCA+TGG 0.607409 1.4:+74225739 None:intergenic
CAATCGTCCAGAAGTGCAGA+AGG 0.609778 1.4:-74225683 MS.gene34019:CDS
TATATAGGAAGCATAGACAA+TGG 0.610027 1.4:+74225485 None:intergenic
ATGGCCTTAAATTGGGTCCA+CGG 0.610231 1.4:+74227115 None:intergenic
GCTTCGCGGGGCTTATGAAG+AGG 0.611657 1.4:+74224424 None:intergenic
TATCATGAACTTATTAACGC+TGG 0.615510 1.4:-74225464 MS.gene34019:CDS
GTGACTGTGAATGAACAGAA+TGG 0.619017 1.4:-74227177 MS.gene34019:CDS
TTGGGACATTTGAGTACTGG+TGG 0.625441 1.4:-74226056 MS.gene34019:CDS
CATATGATCCGTGTACCGAA+AGG 0.636629 1.4:-74225723 MS.gene34019:CDS
AAAAGAATAAACGCTTCGCG+GGG 0.640750 1.4:+74224412 None:intergenic
CGTACCTGAATACCCATACC+CGG 0.640864 1.4:+74225438 None:intergenic
ATAAGATTAAGCAGTTACCA+GGG 0.641370 1.4:-74227239 MS.gene34019:CDS
AATTCTCTATGCTTATACTG+AGG 0.645681 1.4:+74226453 None:intergenic
ATCGATAGAATATCGAGTTG+CGG 0.654875 1.4:+74224671 None:intergenic
AGTTTATAAAGGGCTCACAT+TGG 0.657748 1.4:-74224476 MS.gene34019:CDS
AATAAGAGGTGCTGGACACG+AGG 0.657878 1.4:-74224449 MS.gene34019:CDS
TCCTTGGTATGATAGTGGCA+AGG 0.660717 1.4:-74224616 MS.gene34019:intron
ACCTTGCCACTATCATACCA+AGG 0.669971 1.4:+74224615 None:intergenic
TAGAGAATTCTACATTGCTG+GGG 0.672609 1.4:-74226439 MS.gene34019:CDS
TAAGCAATTGAAGAACAACC+AGG 0.684683 1.4:+74227069 None:intergenic
AATACCGCATCACTCAGAAG+CGG 0.685301 1.4:-74225871 MS.gene34019:CDS
ATTGAAGCACCACTGAACCG+TGG 0.692357 1.4:-74227132 MS.gene34019:CDS
TATAGGAAGCATAGACAATG+GGG 0.694959 1.4:+74225487 None:intergenic
CAAGCCGCTTCTGAGTGATG+CGG 0.701434 1.4:+74225867 None:intergenic
TAAACAAGTTGAGCCAACTG+AGG 0.719538 1.4:+74226272 None:intergenic
TGTGAATGAACAGAATGGAA+GGG 0.721865 1.4:-74227172 MS.gene34019:CDS
GATGCGGTATTGTTACAAGG+CGG 0.780235 1.4:+74225883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAATATAGAATA+TGG + chr1.4:74224382-74224401 None:intergenic 15.0%
!! TTAATAAGTTCATGATATAT+AGG + chr1.4:74226232-74226251 None:intergenic 15.0%
!!! ACTTTTTTGCTTATATTTAT+CGG - chr1.4:74226311-74226330 MS.gene34019:intron 15.0%
!!! TATCAGAATTTTGATTTAAA+AGG - chr1.4:74226136-74226155 MS.gene34019:intron 15.0%
!!! TTTATGCCTATTTATTATTT+TGG - chr1.4:74224811-74224830 MS.gene34019:intron 15.0%
!! AATAAACACAACAAAAGTAA+TGG + chr1.4:74226516-74226535 None:intergenic 20.0%
!! ATAAACACAACAAAAGTAAT+GGG + chr1.4:74226515-74226534 None:intergenic 20.0%
!! ATATTATGATGTGATTTGAT+TGG + chr1.4:74226825-74226844 None:intergenic 20.0%
!! ATGTATTTGGTATATAGTTA+AGG + chr1.4:74226289-74226308 None:intergenic 20.0%
!! ATTCAATTGATAAGTAAGTA+TGG + chr1.4:74225339-74225358 None:intergenic 20.0%
!! CAACATCCAAAATAATAAAT+AGG + chr1.4:74224820-74224839 None:intergenic 20.0%
!!! AAACCAGTTATCAATTTTAA+GGG - chr1.4:74225472-74225491 MS.gene34019:CDS 20.0%
!!! AAGGAACAAAGATATTTTTT+TGG + chr1.4:74226588-74226607 None:intergenic 20.0%
!!! CATATATTTTTCTTGTAAAG+TGG - chr1.4:74225211-74225230 MS.gene34019:intron 20.0%
!!! TATATATCAGTTTTCTACTT+TGG - chr1.4:74225311-74225330 MS.gene34019:intron 20.0%
!!! TATCAATTTTAAGGGATTTA+TGG - chr1.4:74225480-74225499 MS.gene34019:CDS 20.0%
!!! TATTCTTTTTAGATCATTCT+TGG - chr1.4:74227301-74227320 MS.gene34019:CDS 20.0%
!!! TCTTCTTAACTTTGATATTT+TGG - chr1.4:74226970-74226989 MS.gene34019:intron 20.0%
!!! TGAAAAATTGAATGATTTTC+AGG - chr1.4:74225394-74225413 MS.gene34019:intron 20.0%
!!! TGTTCAAGTTTATACTAATT+TGG - chr1.4:74227137-74227156 MS.gene34019:CDS 20.0%
! AACAAATTAAACACAGTTGA+TGG + chr1.4:74225919-74225938 None:intergenic 25.0%
! AATTTGTACTAGTAACATTC+GGG - chr1.4:74226716-74226735 MS.gene34019:intron 25.0%
! CAATTTGTACTAGTAACATT+CGG - chr1.4:74226715-74226734 MS.gene34019:intron 25.0%
! CTCGTTATATGATTATCATA+AGG + chr1.4:74225558-74225577 None:intergenic 25.0%
! GCATTTAGAGAAATATGAAA+TGG + chr1.4:74226651-74226670 None:intergenic 25.0%
! GTTATATGATTATCATAAGG+TGG + chr1.4:74225555-74225574 None:intergenic 25.0%
! TAGAGAAATATGAAATGGAT+GGG + chr1.4:74226646-74226665 None:intergenic 25.0%
! TATCTCAATAAATATCCACA+TGG - chr1.4:74226870-74226889 MS.gene34019:intron 25.0%
! TCAATAAATCGATAGCATAT+AGG + chr1.4:74225875-74225894 None:intergenic 25.0%
! TCATTGATCTATACAGAATA+TGG + chr1.4:74226765-74226784 None:intergenic 25.0%
! TCTGTATAGATCAATGATTA+TGG - chr1.4:74226768-74226787 MS.gene34019:intron 25.0%
! TCTTATCTGTAATCAAGAAT+TGG - chr1.4:74226944-74226963 MS.gene34019:intron 25.0%
! TGATTTCAGATTCTACATAT+AGG - chr1.4:74225676-74225695 MS.gene34019:CDS 25.0%
! TTAGAGAAATATGAAATGGA+TGG + chr1.4:74226647-74226666 None:intergenic 25.0%
!! AAAACTAATGGCCTTAAATT+GGG + chr1.4:74224594-74224613 None:intergenic 25.0%
!! AATCCCTTAAAATTGATAAC+TGG + chr1.4:74225478-74225497 None:intergenic 25.0%
!! AGCAAAAAAGTACATGTATT+TGG + chr1.4:74226302-74226321 None:intergenic 25.0%
!! CAAACCAGTTATCAATTTTA+AGG - chr1.4:74225471-74225490 MS.gene34019:CDS 25.0%
!! TAAAACTAATGGCCTTAAAT+TGG + chr1.4:74224595-74224614 None:intergenic 25.0%
!! TAAATTTTACTCTTCTGTGA+AGG - chr1.4:74227184-74227203 MS.gene34019:CDS 25.0%
!! TAGTATGTGATATCAACTTT+TGG - chr1.4:74226429-74226448 MS.gene34019:CDS 25.0%
!!! ATTTAAGGCCATTAGTTTTA+TGG - chr1.4:74224595-74224614 MS.gene34019:intron 25.0%
!!! TATGCTATCGATTTATTGAA+TGG - chr1.4:74225876-74225895 MS.gene34019:CDS 25.0%
AAGTGACACTCAAATGATTA+AGG + chr1.4:74226607-74226626 None:intergenic 30.0%
AATGCTCTTTGACATTATTG+AGG - chr1.4:74226666-74226685 MS.gene34019:intron 30.0%
AATTCTCTATGCTTATACTG+AGG + chr1.4:74225249-74225268 None:intergenic 30.0%
ACTTGTTTACCAGAGAAATA+AGG - chr1.4:74225441-74225460 MS.gene34019:intron 30.0%
ATAAGATTAAGCAGTTACCA+GGG - chr1.4:74224460-74224479 MS.gene34019:CDS 30.0%
ATAGAGAATTCTACATTGCT+GGG - chr1.4:74225259-74225278 MS.gene34019:intron 30.0%
ATGCTCTTTGACATTATTGA+GGG - chr1.4:74226667-74226686 MS.gene34019:intron 30.0%
CCATTAAGCCATAAAACTAA+TGG + chr1.4:74224606-74224625 None:intergenic 30.0%
CTTGTTTACCAGAGAAATAA+GGG - chr1.4:74225442-74225461 MS.gene34019:intron 30.0%
GAGTTTGATTATTCTGTGAT+TGG - chr1.4:74225575-74225594 MS.gene34019:intron 30.0%
GATGGAGTCAAGTTTATAAA+GGG - chr1.4:74227213-74227232 MS.gene34019:CDS 30.0%
GGATTTATGGTAAGATTGTT+AGG - chr1.4:74225493-74225512 MS.gene34019:CDS 30.0%
GTGATATTGTTGGGAATTAT+TGG - chr1.4:74226182-74226201 MS.gene34019:intron 30.0%
TAAAAAGAATAAACGCTTCG+CGG + chr1.4:74227292-74227311 None:intergenic 30.0%
TAACAGGGATTCCATATATT+TGG - chr1.4:74226054-74226073 MS.gene34019:CDS 30.0%
TATCATGAACTTATTAACGC+TGG - chr1.4:74226235-74226254 MS.gene34019:CDS 30.0%
TCTTATAAAACAAACAGCCA+TGG - chr1.4:74225943-74225962 MS.gene34019:CDS 30.0%
TGAAATTCCAACACAGAAAA+TGG + chr1.4:74224409-74224428 None:intergenic 30.0%
TGTTCAAATCCAACATTCTT+TGG + chr1.4:74224489-74224508 None:intergenic 30.0%
TTCTTGACAGTGATATTGTT+GGG - chr1.4:74226173-74226192 MS.gene34019:intron 30.0%
TTGATATCACATACTATCCA+TGG + chr1.4:74226425-74226444 None:intergenic 30.0%
TTGATCTATACAGAATATGG+AGG + chr1.4:74226762-74226781 None:intergenic 30.0%
TTTCTGTGTTGGAATTTCAT+TGG - chr1.4:74224410-74224429 MS.gene34019:CDS 30.0%
TTTCTTGACAGTGATATTGT+TGG - chr1.4:74226172-74226191 MS.gene34019:intron 30.0%
! AAATTGGTCCTTTTCGTATT+AGG - chr1.4:74224667-74224686 MS.gene34019:CDS 30.0%
! ATATAGGAAGCATAGACAAT+GGG + chr1.4:74226216-74226235 None:intergenic 30.0%
! TATATAGGAAGCATAGACAA+TGG + chr1.4:74226217-74226236 None:intergenic 30.0%
! TTTTCTTGAATCGTTATGCT+TGG - chr1.4:74224706-74224725 MS.gene34019:intron 30.0%
!!! CCATTAGTTTTATGGCTTAA+TGG - chr1.4:74224603-74224622 MS.gene34019:intron 30.0%
!!! TATTATTTTGGATGTTGCAG+TGG - chr1.4:74224823-74224842 MS.gene34019:intron 30.0%
!!! TTAGTTTTATGGCTTAATGG+TGG - chr1.4:74224606-74224625 MS.gene34019:intron 30.0%
AAAAAGAATAAACGCTTCGC+GGG + chr1.4:74227291-74227310 None:intergenic 35.0%
ACAACAGATCTGTACACATT+TGG - chr1.4:74224902-74224921 MS.gene34019:intron 35.0%
AGTTTATAAAGGGCTCACAT+TGG - chr1.4:74227223-74227242 MS.gene34019:CDS 35.0%
ATATGGAATCCCTGTTACAT+TGG + chr1.4:74226051-74226070 None:intergenic 35.0%
ATGTTGAACACGTTCTATTG+AGG - chr1.4:74226106-74226125 MS.gene34019:intron 35.0%
CAAAGACTGAATCTCAGAAT+CGG + chr1.4:74224745-74224764 None:intergenic 35.0%
CAGAATATGGAGGTAATGAA+AGG + chr1.4:74226752-74226771 None:intergenic 35.0%
CATAGAGAATTCTACATTGC+TGG - chr1.4:74225258-74225277 MS.gene34019:intron 35.0%
CATATATTTGGAAGACATGC+AGG - chr1.4:74226066-74226085 MS.gene34019:CDS 35.0%
CTAAGAATTGCTTGTGACTT+TGG - chr1.4:74225702-74225721 MS.gene34019:CDS 35.0%
CTGCATGTCTTCCAAATATA+TGG + chr1.4:74226068-74226087 None:intergenic 35.0%
GATAAGATTAAGCAGTTACC+AGG - chr1.4:74224459-74224478 MS.gene34019:CDS 35.0%
GGATGGAGTCAAGTTTATAA+AGG - chr1.4:74227212-74227231 MS.gene34019:CDS 35.0%
GGTTGTTCTTCAATTGCTTA+TGG - chr1.4:74224633-74224652 MS.gene34019:CDS 35.0%
GTTGGATTTGAACAGTATTC+AGG - chr1.4:74224495-74224514 MS.gene34019:CDS 35.0%
TAAGCAATTGAAGAACAACC+AGG + chr1.4:74224633-74224652 None:intergenic 35.0%
TAGAGAATTCTACATTGCTG+GGG - chr1.4:74225260-74225279 MS.gene34019:intron 35.0%
TAGATCATTCTTGGAGAACA+AGG - chr1.4:74227310-74227329 MS.gene34019:CDS 35.0%
TGTAATGATCATGCTCATGA+AGG - chr1.4:74225082-74225101 MS.gene34019:intron 35.0%
TGTGAATGAACAGAATGGAA+GGG - chr1.4:74224527-74224546 MS.gene34019:intron 35.0%
TTGACATCTGAATACATCCA+TGG - chr1.4:74226405-74226424 MS.gene34019:intron 35.0%
TTGCTAAAGCAAAACAAAGC+TGG + chr1.4:74225122-74225141 None:intergenic 35.0%
! AAGAAAAGTGATTTGCCATC+AGG + chr1.4:74224693-74224712 None:intergenic 35.0%
! ATCGATAGAATATCGAGTTG+CGG + chr1.4:74227031-74227050 None:intergenic 35.0%
! CTCACATTGGTAACAATAAG+AGG - chr1.4:74227236-74227255 MS.gene34019:CDS 35.0%
! TACATTACCTACCTGTTTTC+TGG + chr1.4:74224931-74224950 None:intergenic 35.0%
! TATAGGAAGCATAGACAATG+GGG + chr1.4:74226215-74226234 None:intergenic 35.0%
! TATGGTGCTTCTGAAGAAAT+TGG - chr1.4:74224651-74224670 MS.gene34019:CDS 35.0%
! TGTCAATTCCCTTATTTCTC+TGG + chr1.4:74225453-74225472 None:intergenic 35.0%
! TTTGTGTCCATTTTCTGTGT+TGG - chr1.4:74224399-74224418 MS.gene34019:CDS 35.0%
! TTTTACTCTTCTGTGAAGGT+TGG - chr1.4:74227188-74227207 MS.gene34019:CDS 35.0%
!! ACGATTATCATGACTTGGTT+GGG - chr1.4:74225625-74225644 MS.gene34019:intron 35.0%
AAAAGAATAAACGCTTCGCG+GGG + chr1.4:74227290-74227309 None:intergenic 40.0%
AGCTACCAACCATCATCAAT+TGG - chr1.4:74227058-74227077 MS.gene34019:CDS 40.0%
AGGTCATTATGTTCCTCAGT+TGG - chr1.4:74225414-74225433 MS.gene34019:intron 40.0%
AGTGATGCGGTATTGTTACA+AGG + chr1.4:74225822-74225841 None:intergenic 40.0%
ATACACGTCAGAATGCCTTT+CGG + chr1.4:74225994-74226013 None:intergenic 40.0%
CCAAGGATACCAATTGATGA+TGG + chr1.4:74227070-74227089 None:intergenic 40.0%
CCATCATCAATTGGTATCCT+TGG - chr1.4:74227067-74227086 MS.gene34019:CDS 40.0%
CGTTAGTGACACATTGACAT+TGG - chr1.4:74224988-74225007 MS.gene34019:intron 40.0%
CTGTGAATGAACAGAATGGA+AGG - chr1.4:74224526-74224545 MS.gene34019:intron 40.0%
GACTGACGATTATCATGACT+TGG - chr1.4:74225620-74225639 MS.gene34019:intron 40.0%
GCTCATGAAGGATTTACTCA+TGG - chr1.4:74225094-74225113 MS.gene34019:intron 40.0%
GGCGGAGTATAAATGCTATA+TGG + chr1.4:74225801-74225820 None:intergenic 40.0%
GTGACTGTGAATGAACAGAA+TGG - chr1.4:74224522-74224541 MS.gene34019:intron 40.0%
TAAGAAAAACCAACACCAGC+AGG + chr1.4:74224872-74224891 None:intergenic 40.0%
TGGTATCCTTGGTATGATAG+TGG - chr1.4:74227078-74227097 MS.gene34019:CDS 40.0%
TTGACATTATTGAGGGTCAC+TGG - chr1.4:74226674-74226693 MS.gene34019:intron 40.0%
! AACTTATTAACGCTGGTCTC+CGG - chr1.4:74226242-74226261 MS.gene34019:CDS 40.0%
! ACATTTGGTGACCAGAAAAC+AGG - chr1.4:74224917-74224936 MS.gene34019:intron 40.0%
! TAAACAAGTTGAGCCAACTG+AGG + chr1.4:74225430-74225449 None:intergenic 40.0%
! TCATATGCTCTAGACATCCA+TGG + chr1.4:74225963-74225982 None:intergenic 40.0%
! TCCATCAGTGCAATGTTTTC+AGG - chr1.4:74225737-74225756 MS.gene34019:CDS 40.0%
! TTGAGTTTTACCACGTGTGT+CGG - chr1.4:74225035-74225054 MS.gene34019:intron 40.0%
! TTGGTAACAATAAGAGGTGC+TGG - chr1.4:74227242-74227261 MS.gene34019:CDS 40.0%
!! GACGATTATCATGACTTGGT+TGG - chr1.4:74225624-74225643 MS.gene34019:intron 40.0%
!! GGATACCAATTGATGATGGT+TGG + chr1.4:74227066-74227085 None:intergenic 40.0%
!! TATTCTGTGATTGGTGCTAC+AGG - chr1.4:74225584-74225603 MS.gene34019:intron 40.0%
!!! CTTTGATATTTTGGCTGCAG+TGG - chr1.4:74226979-74226998 MS.gene34019:intron 40.0%
AATACCGCATCACTCAGAAG+CGG - chr1.4:74225828-74225847 MS.gene34019:intron 45.0%
ACCTTGCCACTATCATACCA+AGG + chr1.4:74227087-74227106 None:intergenic 45.0%
ATTGCTGGGGAAAGTTATGC+AGG - chr1.4:74225273-74225292 MS.gene34019:intron 45.0%
CATATGATCCGTGTACCGAA+AGG - chr1.4:74225976-74225995 MS.gene34019:CDS 45.0%
CCATCAGGCCTAATACGAAA+AGG + chr1.4:74224678-74224697 None:intergenic 45.0%
CGCTTCATGCCAATGTAACA+GGG - chr1.4:74226039-74226058 MS.gene34019:CDS 45.0%
GATGCGGTATTGTTACAAGG+CGG + chr1.4:74225819-74225838 None:intergenic 45.0%
GCCTGAAAACATTGCACTGA+TGG + chr1.4:74225741-74225760 None:intergenic 45.0%
GTTTCTTGACTTTGCAGCTG+AGG - chr1.4:74225185-74225204 MS.gene34019:intron 45.0%
TACTCTTCTGTGAAGGTTGG+TGG - chr1.4:74227191-74227210 MS.gene34019:CDS 45.0%
TCAGAATGCCTTTCGGTACA+CGG + chr1.4:74225987-74226006 None:intergenic 45.0%
TGAACCGTGGACCCAATTTA+AGG - chr1.4:74224580-74224599 MS.gene34019:intron 45.0%
TGGTTGGGACATTTGAGTAC+TGG - chr1.4:74225640-74225659 MS.gene34019:CDS 45.0%
TTATGGCTTAATGGTGGTCC+TGG - chr1.4:74224612-74224631 MS.gene34019:intron 45.0%
! ACTTATTAACGCTGGTCTCC+GGG - chr1.4:74226243-74226262 MS.gene34019:CDS 45.0%
! ATGGCCTTAAATTGGGTCCA+CGG + chr1.4:74224587-74224606 None:intergenic 45.0%
! CAATGTGTCACTAACGTGTC+CGG + chr1.4:74224984-74225003 None:intergenic 45.0%
! CCTTTTCGTATTAGGCCTGA+TGG - chr1.4:74224675-74224694 MS.gene34019:CDS 45.0%
! TTGGTGACCAGAAAACAGGT+AGG - chr1.4:74224921-74224940 MS.gene34019:intron 45.0%
!! GATGATGGTTGGTAGCTTCA+AGG + chr1.4:74227055-74227074 None:intergenic 45.0%
!! TCCTTGGTATGATAGTGGCA+AGG - chr1.4:74227083-74227102 MS.gene34019:CDS 45.0%
!! TTGGGACATTTGAGTACTGG+TGG - chr1.4:74225643-74225662 MS.gene34019:CDS 45.0%
!! TTGGTGCTACAGGTTGGAAA+TGG - chr1.4:74225594-74225613 MS.gene34019:intron 45.0%
!! TTTGAGTACTGGTGGACACA+TGG - chr1.4:74225651-74225670 MS.gene34019:CDS 45.0%
!!! ATGGAAGGGCACTGTTTTAC+TGG - chr1.4:74224541-74224560 MS.gene34019:intron 45.0%
AAATTGGGTCCACGGTTCAG+TGG + chr1.4:74224579-74224598 None:intergenic 50.0%
AGAGTTGCAGTTGCTGAGCA+AGG - chr1.4:74225765-74225784 MS.gene34019:intron 50.0%
CAACACCAGCAGGAGAATCA+AGG + chr1.4:74224862-74224881 None:intergenic 50.0%
CCAACATTCTTTGGTTGCCC+TGG + chr1.4:74224480-74224499 None:intergenic 50.0%
CCAGGGCAACCAAAGAATGT+TGG - chr1.4:74224477-74224496 MS.gene34019:CDS 50.0%
CGTACCTGAATACCCATACC+CGG + chr1.4:74226264-74226283 None:intergenic 50.0%
CTGTTCCTTGATTCTCCTGC+TGG - chr1.4:74224854-74224873 MS.gene34019:intron 50.0%
CTTGATTCTCCTGCTGGTGT+TGG - chr1.4:74224860-74224879 MS.gene34019:intron 50.0%
GCGCTTCATGCCAATGTAAC+AGG - chr1.4:74226038-74226057 MS.gene34019:CDS 50.0%
TCACTCAGAAGCGGCTTGAA+CGG - chr1.4:74225837-74225856 MS.gene34019:intron 50.0%
TCCAATCACAGTTCGCCATG+TGG + chr1.4:74226888-74226907 None:intergenic 50.0%
TCCACATGGCGAACTGTGAT+TGG - chr1.4:74226884-74226903 MS.gene34019:intron 50.0%
! ATTGAAGCACCACTGAACCG+TGG - chr1.4:74224567-74224586 MS.gene34019:intron 50.0%
! CAATCGTCCAGAAGTGCAGA+AGG - chr1.4:74226016-74226035 MS.gene34019:CDS 50.0%
! GAATATCGAGTTGCGGTCAG+TGG + chr1.4:74227024-74227043 None:intergenic 50.0%
!! AATAAGAGGTGCTGGACACG+AGG - chr1.4:74227250-74227269 MS.gene34019:CDS 50.0%
!! CTGTGATTGGTGCTACAGGT+TGG - chr1.4:74225588-74225607 MS.gene34019:intron 50.0%
!! CTTCTGTGAAGGTTGGTGGA+TGG - chr1.4:74227195-74227214 MS.gene34019:CDS 50.0%
CAAGCCGCTTCTGAGTGATG+CGG + chr1.4:74225835-74225854 None:intergenic 55.0%
GTCACTAACGTGTCCGGTGT+TGG + chr1.4:74224978-74224997 None:intergenic 55.0%
GTCTCCGGGTATGGGTATTC+AGG - chr1.4:74226257-74226276 MS.gene34019:CDS 55.0%
TGAAACACCGCCACCAACAC+CGG - chr1.4:74224962-74224981 MS.gene34019:intron 55.0%
! ACTAACGTGTCCGGTGTTGG+TGG + chr1.4:74224975-74224994 None:intergenic 55.0%
! GTTTCGTGTCGGTGGTGCAT+AGG - chr1.4:74225057-74225076 MS.gene34019:intron 55.0%
! TAACGCTGGTCTCCGGGTAT+GGG - chr1.4:74226249-74226268 MS.gene34019:CDS 55.0%
! TGAAGCGCCTTCTGCACTTC+TGG + chr1.4:74226026-74226045 None:intergenic 55.0%
! TTAACGCTGGTCTCCGGGTA+TGG - chr1.4:74226248-74226267 MS.gene34019:CDS 55.0%
!! CACGTGTGTCGGTTTCGTGT+CGG - chr1.4:74225046-74225065 MS.gene34019:intron 55.0%
CGACACGAAACCGACACACG+TGG + chr1.4:74225048-74225067 None:intergenic 60.0%
GCTTCGCGGGGCTTATGAAG+AGG + chr1.4:74227278-74227297 None:intergenic 60.0%
!! AACGTGTCCGGTGTTGGTGG+CGG + chr1.4:74224972-74224991 None:intergenic 60.0%
!! GTGTGTCGGTTTCGTGTCGG+TGG - chr1.4:74225049-74225068 MS.gene34019:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 74224369 74227352 74224369 ID=MS.gene34019
chr1.4 mRNA 74224369 74227352 74224369 ID=MS.gene34019.t1;Parent=MS.gene34019
chr1.4 exon 74226986 74227352 74226986 ID=MS.gene34019.t1.exon1;Parent=MS.gene34019.t1
chr1.4 CDS 74226986 74227352 74226986 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74226783 74226878 74226783 ID=MS.gene34019.t1.exon2;Parent=MS.gene34019.t1
chr1.4 CDS 74226783 74226878 74226783 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74226427 74226519 74226427 ID=MS.gene34019.t1.exon3;Parent=MS.gene34019.t1
chr1.4 CDS 74226427 74226519 74226427 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74226220 74226305 74226220 ID=MS.gene34019.t1.exon4;Parent=MS.gene34019.t1
chr1.4 CDS 74226220 74226305 74226220 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74225855 74226115 74225855 ID=MS.gene34019.t1.exon5;Parent=MS.gene34019.t1
chr1.4 CDS 74225855 74226115 74225855 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74225634 74225761 74225634 ID=MS.gene34019.t1.exon6;Parent=MS.gene34019.t1
chr1.4 CDS 74225634 74225761 74225634 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74225443 74225538 74225443 ID=MS.gene34019.t1.exon7;Parent=MS.gene34019.t1
chr1.4 CDS 74225443 74225538 74225443 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74224617 74224722 74224617 ID=MS.gene34019.t1.exon8;Parent=MS.gene34019.t1
chr1.4 CDS 74224617 74224722 74224617 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
chr1.4 exon 74224369 74224515 74224369 ID=MS.gene34019.t1.exon9;Parent=MS.gene34019.t1
chr1.4 CDS 74224369 74224515 74224369 ID=cds.MS.gene34019.t1;Parent=MS.gene34019.t1
Gene Sequence

>MS.gene34019

ATGGGTTATTCCATATTCTATATTGTTTTGTTTGTGTCCATTTTCTGTGTTGGAATTTCATTGGCTTCTTCTATAGAAGATCAAAAGAGAGATAAGATTAAGCAGTTACCAGGGCAACCAAAGAATGTTGGATTTGAACAGTATTCAGGCTATGTGACTGTGAATGAACAGAATGGAAGGGCACTGTTTTACTGGTTAATTGAAGCACCACTGAACCGTGGACCCAATTTAAGGCCATTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCAATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCGTATTAGGCCTGATGGCAAATCACTTTTCTTGAATCGTTATGCTTGGAACAATTGTAAGTCCGATTCTGAGATTCAGTCTTTGTTGCTTCGATTCGTACACAATTTTTTTTCTTCAATTTTTGACAATATTTATGCCTATTTATTATTTTGGATGTTGCAGTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCTTATTGTAATAAAACAACAGATCTGTACACATTTGGTGACCAGAAAACAGGTAGGTAATGTAGTTTGTAACTATGAAACACCGCCACCAACACCGGACACGTTAGTGACACATTGACATTGGTAACAATTTGAGAGAATAGAATAATTGAGTTTTACCACGTGTGTCGGTTTCGTGTCGGTGGTGCATAGGTTTGTAATGATCATGCTCATGAAGGATTTACTCATGGTGCCAGCTTTGTTTTGCTTTAGCAAAGAGATTTGACACGTTAATAACTTTATTGCATATGAGATCTGAGTTTCTTGACTTTGCAGCTGAGGATGCATATATTTTTCTTGTAAAGTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTGAATCAAAATCTGATATATATCAGTTTTCTACTTTGGTGCCATACTTACTTATCAATTGAATGAATGCTTTGTACAATGAAGAATTATTCAATTTCTTGAAAAATTGAATGATTTTCAGGTCATTATGTTCCTCAGTTGGCTCAACTTGTTTACCAGAGAAATAAGGGAATTGACAAACCAGTTATCAATTTTAAGGGATTTATGGTAAGATTGTTAGGTTCATGTTTACATAAACACAATTCAATGCAACACGACCACCTTATGATAATCATATAACGAGTTTGATTATTCTGTGATTGGTGCTACAGGTTGGAAATGGTGTGACTGACGATTATCATGACTTGGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACATATAGGATTCTAAGAATTGCTTGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTTTTCAGGCTCTTAGAGTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACTCCGCCTTGTAACAATACCGCATCACTCAGAAGCGGCTTGAACGGTCGTTATGTAAGCCTATATGCTATCGATTTATTGAATGGTTTATCAATTGTGAATGCCATCAACTGTGTTTAATTTGTTTTGATCTTATAAAACAAACAGCCATGGATGTCTAGAGCATATGATCCGTGTACCGAAAGGCATTCTGACGTGTATTTCAATCGTCCAGAAGTGCAGAAGGCGCTTCATGCCAATGTAACAGGGATTCCATATATTTGGAAGACATGCAGGTATATTATTTTCAATTAATGTTGAACACGTTCTATTGAGGTCTATTCTATCAGAATTTTGATTTAAAAGGTTTCTTATTTTCATTTCTTGACAGTGATATTGTTGGGAATTATTGGACTGATTCCCCATTGTCTATGCTTCCTATATATCATGAACTTATTAACGCTGGTCTCCGGGTATGGGTATTCAGGTACGAACCTTAACTATATACCAAATACATGTACTTTTTTGCTTATATTTATCGGAAGAAGCGAAAATTCACATAAAATGATAAAGAAAGATATATATCTCAACACTTATGAACATAATTCAACAGTTGACATCTGAATACATCCATGGATAGTATGTGATATCAACTTTTGGTAGATTGACATGTCTTACATTATCTTCTAATGTATTTTGCTTACTTTAATAGCGTCAAATCCCATTACTTTTGTTGTGTTTATTCTTTAATTCTTGAATAGTAGATTTTTATTTCAGCTTTTCAAGCACAGTGCCAAAAAAATATCTTTGTTCCTTAATCATTTGAGTGTCACTTATCACGTTTTAACAATCCCATCCATTTCATATTTCTCTAAATGCTCTTTGACATTATTGAGGGTCACTGGCTCAGCATAATTGCACTTCAATTTGTACTAGTAACATTCGGGCTTAGTTGTTCCTTTCATTACCTCCATATTCTGTATAGATCAATGATTATGGACTGACAACATAATTTATGTTAGACATACATCCAATCAAATCACATCATAATATCACTTTATCATGTTAGTTTCTAAATTATCTCAATAAATATCCACATGGCGAACTGTGATTGGATACATGTGTAATTTTTTTTTACACATGCAAATTAAATCTTATCTGTAATCAAGAATTGGAACTCTTCTTAACTTTGATATTTTGGCTGCAGTGGAGACACTGATTCTGTAGTTCCACTGACCGCAACTCGATATTCTATCGATGCCTTGAAGCTACCAACCATCATCAATTGGTATCCTTGGTATGATAGTGGCAAGGTTAGTGCTAATTAACTTCTATAAGTAAAAACTGTTCAAGTTTATACTAATTTGGTATGAATAGCAGCAAGTTTGATACTAAATTTTACTCTTCTGTGAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGGCTCACATTGGTAACAATAAGAGGTGCTGGACACGAGGTTCCTCTTCATAAGCCCCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGGACATGCCATCATCAAGCTAA

Protein sequence

>MS.gene34019.t1

MGYSIFYIVLFVSIFCVGISLASSIEDQKRDKIKQLPGQPKNVGFEQYSGYVTVNEQNGRALFYWLIEAPLNRGPNLRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLFLNRYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDQKTAEDAYIFLVKWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYQRNKGIDKPVINFKGFMVGNGVTDDYHDLVGTFEYWWTHGLISDSTYRILRIACDFGSSQHPSVQCFQALRVAVAEQGNIDPYSIYTPPCNNTASLRSGLNGRYPWMSRAYDPCTERHSDVYFNRPEVQKALHANVTGIPYIWKTCSDIVGNYWTDSPLSMLPIYHELINAGLRVWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTIRGAGHEVPLHKPREAFILFRSFLENKDMPSSS