AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72809

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72809.t1 MTR_5g026550 98.256 172 3 0 1 172 1 172 3.52e-126 352
MS.gene72809.t1 MTR_2g048680 30.872 149 94 3 11 156 80 222 4.16e-13 65.1
MS.gene72809.t1 MTR_2g048680 30.872 149 94 3 11 156 160 302 5.04e-13 65.9
MS.gene72809.t1 MTR_5g043640 37.000 100 57 2 26 125 87 180 5.66e-12 62.4
MS.gene72809.t1 MTR_2g096190 38.136 118 64 4 26 141 132 242 2.88e-11 61.2
MS.gene72809.t1 MTR_6g027840 37.000 100 57 2 26 125 394 487 5.25e-11 60.5
MS.gene72809.t1 MTR_3g491870 33.645 107 65 2 27 133 235 335 7.66e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72809.t1 AT5G07840 69.143 175 51 2 1 172 1 175 1.66e-84 246
MS.gene72809.t1 AT5G61230 71.519 158 41 2 1 156 1 156 3.03e-78 231
MS.gene72809.t1 AT2G03430 43.000 100 51 2 26 125 80 173 2.65e-13 65.9
MS.gene72809.t1 AT5G40160 30.556 144 90 4 18 157 171 308 2.55e-11 61.2
MS.gene72809.t1 AT5G53470 32.258 124 75 4 32 155 221 335 2.62e-11 61.2
MS.gene72809.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.06e-11 60.5
MS.gene72809.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.06e-11 60.5
MS.gene72809.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene72809.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene72809.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene72809.t1 AT2G43850 42.708 96 49 2 33 128 82 171 9.74e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTTGTCGCAACGAAAT+TGG 0.234333 5.1:-17195881 None:intergenic
CTTAGTTCTGGCATCAATAT+TGG 0.262291 5.1:-17197767 None:intergenic
TCCTCTCTTTAGCTGCAATA+TGG 0.279082 5.1:-17197918 None:intergenic
GGGGTCACGCCTTTAGATTT+AGG 0.293985 5.1:-17197682 None:intergenic
GGGTCACGCCTTTAGATTTA+GGG 0.308028 5.1:-17197681 None:intergenic
CGAAGGAGGTTGTTGAGGCC+TGG 0.313233 5.1:+17195908 MS.gene72809:CDS
TTGCAGCTAAAGAGAGGAAT+AGG 0.325717 5.1:+17197923 MS.gene72809:CDS
GAAGGAGGTTGTTGAGGCCT+GGG 0.337003 5.1:+17195909 MS.gene72809:CDS
ATTACTGCCCAGGACTTGAA+TGG 0.394427 5.1:+17198025 MS.gene72809:CDS
TAGGGATGCTGTGAAATTCT+TGG 0.430272 5.1:+17197942 MS.gene72809:CDS
TGTGAGAGAAGACATGCTTC+AGG 0.432571 5.1:+17195853 None:intergenic
GCCACAAGCACCCTTAGTTC+TGG 0.432585 5.1:-17197779 None:intergenic
TCATAGGCCCATTCAAGTCC+TGG 0.450896 5.1:-17198033 None:intergenic
AAGTCTCTTCATTTCCTCAT+AGG 0.467730 5.1:-17198049 None:intergenic
CAATATTGATGCCAGAACTA+AGG 0.481725 5.1:+17197768 MS.gene72809:CDS
CTCCACCTTGCTGCCGAAGG+TGG 0.490968 5.1:+17197706 MS.gene72809:CDS
CACTCCGAGATGACCACCTT+CGG 0.497622 5.1:-17197719 None:intergenic
GCTGCCGAAGGTGGTCATCT+CGG 0.507384 5.1:+17197715 MS.gene72809:CDS
TTACTGCCCAGGACTTGAAT+GGG 0.512016 5.1:+17198026 MS.gene72809:CDS
GTGAAATTCTTGGTAGAGAA+TGG 0.513179 5.1:+17197952 MS.gene72809:CDS
CTTCGGCAGCAAGGTGGAGA+GGG 0.515210 5.1:-17197702 None:intergenic
TGCAGCTAAAGAGAGGAATA+GGG 0.519744 5.1:+17197924 MS.gene72809:CDS
AGGACTTGAATGGGCCTATG+AGG 0.531270 5.1:+17198035 MS.gene72809:CDS
CCTCTCCACCTTGCTGCCGA+AGG 0.532516 5.1:+17197703 MS.gene72809:CDS
AATCTGCTATCATTGATATC+CGG 0.533897 5.1:-17197988 None:intergenic
AAAGCTTCTCAACGAAGGAA+TGG 0.535311 5.1:+17197636 MS.gene72809:CDS
TTGATACTGATGATAGAGGT+TGG 0.535680 5.1:+17195933 MS.gene72809:CDS
CCTCCTCTTCATTACTGCCC+AGG 0.539604 5.1:+17198015 MS.gene72809:CDS
AGGTGGTCATCTCGGAGTGA+TGG 0.540638 5.1:+17197723 MS.gene72809:CDS
AATATTGATGCCAGAACTAA+GGG 0.549077 5.1:+17197769 MS.gene72809:CDS
GCATGGGGCCCTAAATCTAA+AGG 0.550158 5.1:+17197673 MS.gene72809:CDS
AAGGAGGTTGTTGAGGCCTG+GGG 0.557016 5.1:+17195910 MS.gene72809:CDS
GAGCTGCAAGATGTGTCCTC+CGG 0.558005 5.1:-17198090 None:intergenic
CATAGGCCCATTCAAGTCCT+GGG 0.560704 5.1:-17198032 None:intergenic
CCTTCGGCAGCAAGGTGGAG+AGG 0.564920 5.1:-17197703 None:intergenic
CTTCATGTTTATGCAAGGAA+AGG 0.570970 5.1:+17195962 MS.gene72809:CDS
AAGGAAAGGTGATATTAAGC+TGG 0.572436 5.1:+17195976 MS.gene72809:CDS
GAATGGAGCATTCTTGCCAC+CGG 0.577208 5.1:+17197969 MS.gene72809:CDS
CCTCGCTTCATGTTTATGCA+AGG 0.580909 5.1:+17195957 MS.gene72809:CDS
TGGATGTTAATGTGACTGCA+TGG 0.583622 5.1:+17197656 MS.gene72809:CDS
CTTCGCGAAGGAGGTTGTTG+AGG 0.590897 5.1:+17195903 MS.gene72809:CDS
TCCATATTGCAGCTAAAGAG+AGG 0.596526 5.1:+17197917 MS.gene72809:CDS
CTATCATCAGTATCAACCCC+AGG 0.598054 5.1:-17195926 None:intergenic
TCGACAGCAAGAATTATCTC+CGG 0.599712 5.1:+17198071 MS.gene72809:CDS
GATGACCACCTTCGGCAGCA+AGG 0.610444 5.1:-17197711 None:intergenic
TTCGGCAGCAAGGTGGAGAG+GGG 0.614770 5.1:-17197701 None:intergenic
GCCAGAACTAAGGGTGCTTG+TGG 0.615169 5.1:+17197778 MS.gene72809:CDS
CTCAACAACCTCCTTCGCGA+AGG 0.617083 5.1:-17195902 None:intergenic
GACAAAGTCCTTCGCGAAGG+AGG 0.622537 5.1:+17195894 MS.gene72809:CDS
AGTCCTGGGCAGTAATGAAG+AGG 0.632969 5.1:-17198018 None:intergenic
GAGAAGACATGCTTCAGGAG+AGG 0.635852 5.1:+17195858 None:intergenic
CCTGGGCAGTAATGAAGAGG+AGG 0.640191 5.1:-17198015 None:intergenic
TCTTTAGCTGCAATATGGAG+CGG 0.641697 5.1:-17197913 None:intergenic
GGATGTTAATGTGACTGCAT+GGG 0.642233 5.1:+17197657 MS.gene72809:CDS
TGCGACAAAGTCCTTCGCGA+AGG 0.643930 5.1:+17195891 MS.gene72809:CDS
CTGCTATCATTGATATCCGG+TGG 0.644744 5.1:-17197985 None:intergenic
GGGGTTGATACTGATGATAG+AGG 0.648484 5.1:+17195929 MS.gene72809:CDS
GATGTTAATGTGACTGCATG+GGG 0.662007 5.1:+17197658 MS.gene72809:CDS
CCTTGCATAAACATGAAGCG+AGG 0.684018 5.1:-17195957 None:intergenic
GACCACCTTCGGCAGCAAGG+TGG 0.692091 5.1:-17197708 None:intergenic
ACAGCAAGAATTATCTCCGG+AGG 0.696504 5.1:+17198074 MS.gene72809:CDS
ATGGATGAACTGCTTGAGCG+TGG 0.700290 5.1:+17197742 MS.gene72809:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAAAAATCAAAATT+TGG - chr5.1:17197864-17197883 None:intergenic 10.0%
!!! TTTTTTACTATAATATCATT+AGG + chr5.1:17196384-17196403 MS.gene72809:intron 10.0%
!!! ATATGAATGTTTTATTATGA+GGG + chr5.1:17196086-17196105 MS.gene72809:intron 15.0%
!!! TATATGAATGTTTTATTATG+AGG + chr5.1:17196085-17196104 MS.gene72809:intron 15.0%
!! ATGTATTCTCAAAAACATAA+AGG + chr5.1:17196551-17196570 MS.gene72809:intron 20.0%
!! TATAATATCATTAGGAGATA+AGG + chr5.1:17196392-17196411 MS.gene72809:intron 20.0%
!! TTATACTTAAAAATCCTGTT+AGG - chr5.1:17197170-17197189 None:intergenic 20.0%
!!! AAATTGACTAAGTTTTACTT+CGG + chr5.1:17196031-17196050 MS.gene72809:intron 20.0%
!!! TGATAATTTTCTACTCTTAT+AGG - chr5.1:17197556-17197575 None:intergenic 20.0%
! AACCCAATAAATCTAAGTAA+AGG - chr5.1:17196173-17196192 None:intergenic 25.0%
! AAGATAAATAATGTGCAAGA+AGG + chr5.1:17196132-17196151 MS.gene72809:intron 25.0%
! AAGTTATGACTAATGAGTTA+AGG + chr5.1:17196916-17196935 MS.gene72809:intron 25.0%
! ACCCAATAAATCTAAGTAAA+GGG - chr5.1:17196172-17196191 None:intergenic 25.0%
! ACTAATATGGAAGTCTATAT+GGG - chr5.1:17197822-17197841 None:intergenic 25.0%
! AGTTATGACTAATGAGTTAA+GGG + chr5.1:17196917-17196936 MS.gene72809:intron 25.0%
! GACAGATAGATATACTAATA+TGG - chr5.1:17197835-17197854 None:intergenic 25.0%
! TACTAATATGGAAGTCTATA+TGG - chr5.1:17197823-17197842 None:intergenic 25.0%
! TCCATCTACAAAACAAAATA+TGG - chr5.1:17196300-17196319 None:intergenic 25.0%
! TTTGTCTAATATTCACTTCA+AGG + chr5.1:17196358-17196377 MS.gene72809:intron 25.0%
!! AATTTTACAGTGTGCTATAT+TGG + chr5.1:17196679-17196698 MS.gene72809:intron 25.0%
!! ATTTTACAGTGTGCTATATT+GGG + chr5.1:17196680-17196699 MS.gene72809:intron 25.0%
!!! ATATTTTGTTTTGTAGATGG+AGG + chr5.1:17196299-17196318 MS.gene72809:intron 25.0%
!!! TATTTTGTTTTGTAGATGGA+GGG + chr5.1:17196300-17196319 MS.gene72809:intron 25.0%
!!! TTATAATGTTGTTTCTGAAC+AGG + chr5.1:17197609-17197628 MS.gene72809:intron 25.0%
AACAAAATATGGCTTTCAGT+AGG - chr5.1:17196289-17196308 None:intergenic 30.0%
AATATTGATGCCAGAACTAA+GGG + chr5.1:17197769-17197788 MS.gene72809:CDS 30.0%
AATCTGCTATCATTGATATC+CGG - chr5.1:17197991-17198010 None:intergenic 30.0%
AGGTTGAATTTGAATAGTAC+AGG + chr5.1:17196615-17196634 MS.gene72809:intron 30.0%
ATTATCACACTTGAAGTGTA+AGG + chr5.1:17197569-17197588 MS.gene72809:intron 30.0%
GCCCTTTACTTAGATTTATT+GGG + chr5.1:17196168-17196187 MS.gene72809:intron 30.0%
GTACTATTCAAATTCAACCT+AGG - chr5.1:17196615-17196634 None:intergenic 30.0%
TAACTAATTGCAACCATCTA+AGG - chr5.1:17197119-17197138 None:intergenic 30.0%
TAATCCAGCTATATGAATTG+AGG + chr5.1:17196521-17196540 MS.gene72809:intron 30.0%
TGCCCTTTACTTAGATTTAT+TGG + chr5.1:17196167-17196186 MS.gene72809:intron 30.0%
TGGTGAATTTGTAGAAGTAA+CGG + chr5.1:17196951-17196970 MS.gene72809:intron 30.0%
TTAGATGGTTGCAATTAGTT+AGG + chr5.1:17197118-17197137 MS.gene72809:intron 30.0%
TTATCACACTTGAAGTGTAA+GGG + chr5.1:17197570-17197589 MS.gene72809:intron 30.0%
TTCTATACAGCTCTTGTAAA+AGG + chr5.1:17197193-17197212 MS.gene72809:intron 30.0%
! AGTTTTACTTCGGAATTTTG+TGG + chr5.1:17196041-17196060 MS.gene72809:intron 30.0%
! ATTTTGTTCTCCTTAAACCA+GGG + chr5.1:17197887-17197906 MS.gene72809:intron 30.0%
! GCTATCAATCTAGAGTTATT+TGG - chr5.1:17196858-17196877 None:intergenic 30.0%
! GGTCAATTTTCTTGAGATTT+AGG + chr5.1:17196434-17196453 MS.gene72809:intron 30.0%
! TTTTACAGTGTGCTATATTG+GGG + chr5.1:17196681-17196700 MS.gene72809:intron 30.0%
! TTTTGTAAACACAGCAATGA+AGG - chr5.1:17197433-17197452 None:intergenic 30.0%
!!! GCCATATTTTGTTTTGTAGA+TGG + chr5.1:17196296-17196315 MS.gene72809:intron 30.0%
!!! GGTTAGTTTCTGCATTTTAT+TGG + chr5.1:17196413-17196432 MS.gene72809:intron 30.0%
AACTTGCAATTGAAAGTCGT+TGG + chr5.1:17196709-17196728 MS.gene72809:intron 35.0%
AAGGAAAGGTGATATTAAGC+TGG + chr5.1:17195976-17195995 MS.gene72809:CDS 35.0%
AAGTCTCTTCATTTCCTCAT+AGG - chr5.1:17198052-17198071 None:intergenic 35.0%
AATAGTACAGGACTAAAGAG+GGG + chr5.1:17196627-17196646 MS.gene72809:intron 35.0%
ATGAATCTACTGAGAAGGTA+AGG + chr5.1:17196584-17196603 MS.gene72809:intron 35.0%
ATTAACGAACAGCCGTTATT+GGG + chr5.1:17197302-17197321 MS.gene72809:intron 35.0%
CAATATTGATGCCAGAACTA+AGG + chr5.1:17197768-17197787 MS.gene72809:CDS 35.0%
CAATCAGTTGCACATTATGT+TGG + chr5.1:17196754-17196773 MS.gene72809:intron 35.0%
CTTCATGTTTATGCAAGGAA+AGG + chr5.1:17195962-17195981 MS.gene72809:CDS 35.0%
GAATAGTACAGGACTAAAGA+GGG + chr5.1:17196626-17196645 MS.gene72809:intron 35.0%
GGTGAATTTGTAGAAGTAAC+GGG + chr5.1:17196952-17196971 MS.gene72809:intron 35.0%
GTAAAAAAGCTTCTCAACGA+AGG + chr5.1:17197631-17197650 MS.gene72809:CDS 35.0%
GTCTAATATTCACTTCAAGG+TGG + chr5.1:17196361-17196380 MS.gene72809:intron 35.0%
GTGAAATTCTTGGTAGAGAA+TGG + chr5.1:17197952-17197971 MS.gene72809:CDS 35.0%
TACATTTGTAGAGTGTGAAG+TGG + chr5.1:17197025-17197044 MS.gene72809:intron 35.0%
TGAATAGTACAGGACTAAAG+AGG + chr5.1:17196625-17196644 MS.gene72809:intron 35.0%
TGTACCTCAATTCATATAGC+TGG - chr5.1:17196528-17196547 None:intergenic 35.0%
TGTAGATGAATCTACTGAGA+AGG + chr5.1:17196579-17196598 MS.gene72809:intron 35.0%
TGTTGTGTAGGAATTGTGTT+TGG + chr5.1:17196223-17196242 MS.gene72809:intron 35.0%
TTGATACTGATGATAGAGGT+TGG + chr5.1:17195933-17195952 MS.gene72809:CDS 35.0%
! ATCATCGACTAAAGTAAGCA+AGG - chr5.1:17197499-17197518 None:intergenic 35.0%
! ATTGATAGCATAGCATTGAG+AGG + chr5.1:17196869-17196888 MS.gene72809:intron 35.0%
! GATTTTGTTCTCCTTAAACC+AGG + chr5.1:17197886-17197905 MS.gene72809:intron 35.0%
! GCTTCAGTTATGAGATTTTG+GGG + chr5.1:17196254-17196273 MS.gene72809:intron 35.0%
! GGCTTCAGTTATGAGATTTT+GGG + chr5.1:17196253-17196272 MS.gene72809:intron 35.0%
! TGGCTTCAGTTATGAGATTT+TGG + chr5.1:17196252-17196271 MS.gene72809:intron 35.0%
! TTGATAGCATAGCATTGAGA+GGG + chr5.1:17196870-17196889 MS.gene72809:intron 35.0%
!! CTTAGTTCTGGCATCAATAT+TGG - chr5.1:17197770-17197789 None:intergenic 35.0%
!!! GGAGGGTTGTTTTTAACATT+TGG + chr5.1:17196317-17196336 MS.gene72809:intron 35.0%
AAAGCTTCTCAACGAAGGAA+TGG + chr5.1:17197636-17197655 MS.gene72809:CDS 40.0%
AGGGGTTGTTTGTAGATTCA+TGG + chr5.1:17196889-17196908 MS.gene72809:intron 40.0%
CAATTTACCGAAGTGATTGC+TGG + chr5.1:17197240-17197259 MS.gene72809:intron 40.0%
CATAAGACCAGCAATCACTT+CGG - chr5.1:17197250-17197269 None:intergenic 40.0%
CATTAACGAACAGCCGTTAT+TGG + chr5.1:17197301-17197320 MS.gene72809:intron 40.0%
CTAGTCTACACCTTCTATGT+TGG - chr5.1:17197052-17197071 None:intergenic 40.0%
GAGAAGGTAAGGTTATTCCT+AGG + chr5.1:17196595-17196614 MS.gene72809:intron 40.0%
GATGTTAATGTGACTGCATG+GGG + chr5.1:17197658-17197677 MS.gene72809:CDS 40.0%
GGATGTTAATGTGACTGCAT+GGG + chr5.1:17197657-17197676 MS.gene72809:CDS 40.0%
GGTACAGTGAAACATTGGAA+GGG + chr5.1:17196730-17196749 MS.gene72809:intron 40.0%
GTCGATGATTCATGAACTGT+TGG + chr5.1:17197510-17197529 MS.gene72809:intron 40.0%
GTTACGCAGTATTGTTCACA+CGG + chr5.1:17197143-17197162 MS.gene72809:intron 40.0%
TAATGAGTTAAGGGTGACCA+GGG + chr5.1:17196926-17196945 MS.gene72809:intron 40.0%
TAGGGATGCTGTGAAATTCT+TGG + chr5.1:17197942-17197961 MS.gene72809:CDS 40.0%
TCCATATTGCAGCTAAAGAG+AGG + chr5.1:17197917-17197936 MS.gene72809:CDS 40.0%
TCCTCTCTTTAGCTGCAATA+TGG - chr5.1:17197921-17197940 None:intergenic 40.0%
TCGACAGCAAGAATTATCTC+CGG + chr5.1:17198071-17198090 MS.gene72809:CDS 40.0%
TCGTACCTCATACCCAATAA+CGG - chr5.1:17197317-17197336 None:intergenic 40.0%
TCGTTGGTACAGTGAAACAT+TGG + chr5.1:17196725-17196744 MS.gene72809:intron 40.0%
TCTTTAGCTGCAATATGGAG+CGG - chr5.1:17197916-17197935 None:intergenic 40.0%
TGCAGCTAAAGAGAGGAATA+GGG + chr5.1:17197924-17197943 MS.gene72809:CDS 40.0%
TGGATGTTAATGTGACTGCA+TGG + chr5.1:17197656-17197675 MS.gene72809:CDS 40.0%
TGGTACAGTGAAACATTGGA+AGG + chr5.1:17196729-17196748 MS.gene72809:intron 40.0%
TTGCAGCTAAAGAGAGGAAT+AGG + chr5.1:17197923-17197942 MS.gene72809:CDS 40.0%
! AAAGGTGCAAGGAATGGTTA+TGG + chr5.1:17197211-17197230 MS.gene72809:intron 40.0%
! CATAGAAGGTGTAGACTAGA+TGG + chr5.1:17197053-17197072 MS.gene72809:intron 40.0%
! CTTGTAAAAGGTGCAAGGAA+TGG + chr5.1:17197205-17197224 MS.gene72809:intron 40.0%
! GATGACAAGTTTGTTTGACG+AGG + chr5.1:17197075-17197094 MS.gene72809:intron 40.0%
! TGATAGCATAGCATTGAGAG+GGG + chr5.1:17196871-17196890 MS.gene72809:intron 40.0%
!! GGAATTGTGTTTGGTTTGAG+TGG + chr5.1:17196232-17196251 MS.gene72809:intron 40.0%
!!! TTTTAGCTCCCAACATGCAT+CGG - chr5.1:17197385-17197404 None:intergenic 40.0%
AACAGCCGTTATTGGGTATG+AGG + chr5.1:17197309-17197328 MS.gene72809:intron 45.0%
AACATGCATCGGGGAATTTG+GGG - chr5.1:17197374-17197393 None:intergenic 45.0%
AAGTCGGTTGCAAGCATCAA+CGG - chr5.1:17197350-17197369 None:intergenic 45.0%
AATGAGTTAAGGGTGACCAG+GGG + chr5.1:17196927-17196946 MS.gene72809:intron 45.0%
ACAACCAGAACTGTGTCAAC+TGG - chr5.1:17197276-17197295 None:intergenic 45.0%
ACAGCAAGAATTATCTCCGG+AGG + chr5.1:17198074-17198093 MS.gene72809:CDS 45.0%
ATTACTGCCCAGGACTTGAA+TGG + chr5.1:17198025-17198044 MS.gene72809:CDS 45.0%
ATTGTTCACACGGACCTAAC+AGG + chr5.1:17197153-17197172 MS.gene72809:intron 45.0%
CAAATTCCCCGATGCATGTT+GGG + chr5.1:17197374-17197393 MS.gene72809:intron 45.0%
CAACATGCATCGGGGAATTT+GGG - chr5.1:17197375-17197394 None:intergenic 45.0%
CCTCGCTTCATGTTTATGCA+AGG + chr5.1:17195957-17195976 MS.gene72809:CDS 45.0%
CCTTGCATAAACATGAAGCG+AGG - chr5.1:17195960-17195979 None:intergenic 45.0%
CTAATGAGTTAAGGGTGACC+AGG + chr5.1:17196925-17196944 MS.gene72809:intron 45.0%
CTATCATCAGTATCAACCCC+AGG - chr5.1:17195929-17195948 None:intergenic 45.0%
CTGCTATCATTGATATCCGG+TGG - chr5.1:17197988-17198007 None:intergenic 45.0%
GACAGTTATGACCAGAAGAG+GGG + chr5.1:17196776-17196795 MS.gene72809:intron 45.0%
GAGATTCGTGTGTGTTGTGT+AGG + chr5.1:17196211-17196230 MS.gene72809:intron 45.0%
GGACAGTTATGACCAGAAGA+GGG + chr5.1:17196775-17196794 MS.gene72809:intron 45.0%
GGACTTTGTCGCAACGAAAT+TGG - chr5.1:17195884-17195903 None:intergenic 45.0%
GGGTCACGCCTTTAGATTTA+GGG - chr5.1:17197684-17197703 None:intergenic 45.0%
GTGAAGTGGTCCAACATAGA+AGG + chr5.1:17197039-17197058 MS.gene72809:intron 45.0%
TAAAGGGTGACTAGTGCACA+AGG - chr5.1:17197408-17197427 None:intergenic 45.0%
TCAGAGTCACACTTCTAGAC+TGG - chr5.1:17196984-17197003 None:intergenic 45.0%
TCTACAAATTCACCAACCCC+TGG - chr5.1:17196946-17196965 None:intergenic 45.0%
TGACTGGCAAGATCCTTAGA+TGG + chr5.1:17197103-17197122 MS.gene72809:intron 45.0%
TGGACAGTTATGACCAGAAG+AGG + chr5.1:17196774-17196793 MS.gene72809:intron 45.0%
TTACTGCCCAGGACTTGAAT+GGG + chr5.1:17198026-17198045 MS.gene72809:CDS 45.0%
! ACACAGCAATGAAGGCGTAA+AGG - chr5.1:17197425-17197444 None:intergenic 45.0%
! CACAGCAATGAAGGCGTAAA+GGG - chr5.1:17197424-17197443 None:intergenic 45.0%
! CAGCTCTTGTAAAAGGTGCA+AGG + chr5.1:17197200-17197219 MS.gene72809:intron 45.0%
! TTTAGCTCCCAACATGCATC+GGG - chr5.1:17197384-17197403 None:intergenic 45.0%
!! GGGGTTGATACTGATGATAG+AGG + chr5.1:17195929-17195948 MS.gene72809:CDS 45.0%
AGGACTTGAATGGGCCTATG+AGG + chr5.1:17198035-17198054 MS.gene72809:CDS 50.0%
AGTCCTGGGCAGTAATGAAG+AGG - chr5.1:17198021-17198040 None:intergenic 50.0%
ATGGATGAACTGCTTGAGCG+TGG + chr5.1:17197742-17197761 MS.gene72809:CDS 50.0%
CATAGGCCCATTCAAGTCCT+GGG - chr5.1:17198035-17198054 None:intergenic 50.0%
CCAAATTCCCCGATGCATGT+TGG + chr5.1:17197373-17197392 MS.gene72809:intron 50.0%
CCAACATGCATCGGGGAATT+TGG - chr5.1:17197376-17197395 None:intergenic 50.0%
GAGACCAGTTGACACAGTTC+TGG + chr5.1:17197269-17197288 MS.gene72809:intron 50.0%
GCATGGGGCCCTAAATCTAA+AGG + chr5.1:17197673-17197692 MS.gene72809:CDS 50.0%
GGGGTCACGCCTTTAGATTT+AGG - chr5.1:17197685-17197704 None:intergenic 50.0%
TCATAGGCCCATTCAAGTCC+TGG - chr5.1:17198036-17198055 None:intergenic 50.0%
TGGGTATGAGGTACGACTGT+AGG + chr5.1:17197321-17197340 MS.gene72809:intron 50.0%
TTAGCTCCCAACATGCATCG+GGG - chr5.1:17197383-17197402 None:intergenic 50.0%
TTATGACCAGAAGAGGGGCT+TGG + chr5.1:17196781-17196800 MS.gene72809:intron 50.0%
! GAATGGAGCATTCTTGCCAC+CGG + chr5.1:17197969-17197988 MS.gene72809:CDS 50.0%
!! ATGTGCAGAGCAGCTCTAGA+TGG + chr5.1:17196818-17196837 MS.gene72809:intron 50.0%
!! TGTGCAGAGCAGCTCTAGAT+GGG + chr5.1:17196819-17196838 MS.gene72809:intron 50.0%
AAGGAGGTTGTTGAGGCCTG+GGG + chr5.1:17195910-17195929 MS.gene72809:CDS 55.0%
AGGTGGTCATCTCGGAGTGA+TGG + chr5.1:17197723-17197742 MS.gene72809:CDS 55.0%
AGTTAAGGGTGACCAGGGGT+TGG + chr5.1:17196931-17196950 MS.gene72809:intron 55.0%
ATACTGCCAAGCCCCTCTTC+TGG - chr5.1:17196790-17196809 None:intergenic 55.0%
CACTCCGAGATGACCACCTT+CGG - chr5.1:17197722-17197741 None:intergenic 55.0%
CCTCCTCTTCATTACTGCCC+AGG + chr5.1:17198015-17198034 MS.gene72809:CDS 55.0%
CCTGGGCAGTAATGAAGAGG+AGG - chr5.1:17198018-17198037 None:intergenic 55.0%
CTCAACAACCTCCTTCGCGA+AGG - chr5.1:17195905-17195924 None:intergenic 55.0%
CTTCGCGAAGGAGGTTGTTG+AGG + chr5.1:17195903-17195922 MS.gene72809:CDS 55.0%
GAAGGAGGTTGTTGAGGCCT+GGG + chr5.1:17195909-17195928 MS.gene72809:CDS 55.0%
GACAAAGTCCTTCGCGAAGG+AGG + chr5.1:17195894-17195913 MS.gene72809:CDS 55.0%
GAGCTGCAAGATGTGTCCTC+CGG - chr5.1:17198093-17198112 None:intergenic 55.0%
GCCACAAGCACCCTTAGTTC+TGG - chr5.1:17197782-17197801 None:intergenic 55.0%
GTACAGGACTAAAGAGGGGC+AGG + chr5.1:17196631-17196650 MS.gene72809:intron 55.0%
GTTTGACGAGGTTGCGTGAC+TGG + chr5.1:17197087-17197106 MS.gene72809:intron 55.0%
TGCGACAAAGTCCTTCGCGA+AGG + chr5.1:17195891-17195910 MS.gene72809:CDS 55.0%
! TCGGGGAATTTGGGGCAAGT+CGG - chr5.1:17197366-17197385 None:intergenic 55.0%
!! GCCAGAACTAAGGGTGCTTG+TGG + chr5.1:17197778-17197797 MS.gene72809:CDS 55.0%
!! GTGCAGAGCAGCTCTAGATG+GGG + chr5.1:17196820-17196839 MS.gene72809:intron 55.0%
CGAAGGAGGTTGTTGAGGCC+TGG + chr5.1:17195908-17195927 MS.gene72809:CDS 60.0%
CTTCGGCAGCAAGGTGGAGA+GGG - chr5.1:17197705-17197724 None:intergenic 60.0%
GATGACCACCTTCGGCAGCA+AGG - chr5.1:17197714-17197733 None:intergenic 60.0%
GCAATATGGAGCGGTGTCCC+TGG - chr5.1:17197907-17197926 None:intergenic 60.0%
GCTGCCGAAGGTGGTCATCT+CGG + chr5.1:17197715-17197734 MS.gene72809:CDS 60.0%
GGAGCGGTGTCCCTGGTTTA+AGG - chr5.1:17197900-17197919 None:intergenic 60.0%
TTCGGCAGCAAGGTGGAGAG+GGG - chr5.1:17197704-17197723 None:intergenic 60.0%
CCTCTCCACCTTGCTGCCGA+AGG + chr5.1:17197703-17197722 MS.gene72809:CDS 65.0%
CCTTCGGCAGCAAGGTGGAG+AGG - chr5.1:17197706-17197725 None:intergenic 65.0%
CTCCACCTTGCTGCCGAAGG+TGG + chr5.1:17197706-17197725 MS.gene72809:CDS 65.0%
GACCACCTTCGGCAGCAAGG+TGG - chr5.1:17197711-17197730 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 17195866 17198122 17195866 ID=MS.gene72809
chr5.1 mRNA 17195866 17198122 17195866 ID=MS.gene72809.t1;Parent=MS.gene72809
chr5.1 exon 17195866 17195997 17195866 ID=MS.gene72809.t1.exon1;Parent=MS.gene72809.t1
chr5.1 CDS 17195866 17195997 17195866 ID=cds.MS.gene72809.t1;Parent=MS.gene72809.t1
chr5.1 exon 17197631 17197802 17197631 ID=MS.gene72809.t1.exon2;Parent=MS.gene72809.t1
chr5.1 CDS 17197631 17197802 17197631 ID=cds.MS.gene72809.t1;Parent=MS.gene72809.t1
chr5.1 exon 17197908 17198122 17197908 ID=MS.gene72809.t1.exon3;Parent=MS.gene72809.t1
chr5.1 CDS 17197908 17198122 17197908 ID=cds.MS.gene72809.t1;Parent=MS.gene72809.t1
Gene Sequence

>MS.gene72809

ATGCTTCAGGAGAGGCCAATTTCGTTGCGACAAAGTCCTTCGCGAAGGAGGTTGTTGAGGCCTGGGGTTGATACTGATGATAGAGGTTGGACCTCGCTTCATGTTTATGCAAGGAAAGGTGATATTAAGCTGGTAAGTTCTTTTCTTTTGTTCATTTTTTTATGCAAATTGACTAAGTTTTACTTCGGAATTTTGTGGATAAAATTCGAGAAATGTATGTATATGAATGTTTTATTATGAGGGTAAGTTTGATTTTGACGTGCACAAAGATAAATAATGTGCAAGAAGGAAAACTCAAGTGTGCCCTTTACTTAGATTTATTGGGTTGATTGAATTTGAGATATAGAGATTCGTGTGTGTTGTGTAGGAATTGTGTTTGGTTTGAGTGGCTTCAGTTATGAGATTTTGGGGCTTTTGTTTCCTACTGAAAGCCATATTTTGTTTTGTAGATGGAGGGTTGTTTTTAACATTTGGTTACATCTCTATCATATATTTGTCTAATATTCACTTCAAGGTGGTTTTTTACTATAATATCATTAGGAGATAAGGTTAGTTTCTGCATTTTATTGGTCAATTTTCTTGAGATTTAGGTGTGTAGCATATCTCTCAACTTTTTTATCACATAATCGAGCTATATGAAACGAGTTTTGTCACATAATCCAGCTATATGAATTGAGGTACACATATGTATTCTCAAAAACATAAAGGCTCAATGTAGATGAATCTACTGAGAAGGTAAGGTTATTCCTAGGTTGAATTTGAATAGTACAGGACTAAAGAGGGGCAGGACAGTATGCAAACAATGTATAGAACAATTTTACAGTGTGCTATATTGGGGCAAATAACTTGCAATTGAAAGTCGTTGGTACAGTGAAACATTGGAAGGGACAATCAGTTGCACATTATGTTGGACAGTTATGACCAGAAGAGGGGCTTGGCAGTATGTCAAACAATGTGCAGAGCAGCTCTAGATGGGGCTATGTGTATTGCCAAATAACTCTAGATTGATAGCATAGCATTGAGAGGGGTTGTTTGTAGATTCATGGTCAGAAGTTATGACTAATGAGTTAAGGGTGACCAGGGGTTGGTGAATTTGTAGAAGTAACGGGTATTCTCCAGTCTAGAAGTGTGACTCTGATTCTGTCAGACATGTAGTATATACATTTGTAGAGTGTGAAGTGGTCCAACATAGAAGGTGTAGACTAGATGGATGACAAGTTTGTTTGACGAGGTTGCGTGACTGGCAAGATCCTTAGATGGTTGCAATTAGTTAGGAAGTTACGCAGTATTGTTCACACGGACCTAACAGGATTTTTAAGTATAAATGTTCTATACAGCTCTTGTAAAAGGTGCAAGGAATGGTTATGGTTACTGCAATTTACCGAAGTGATTGCTGGTCTTATGAGACCAGTTGACACAGTTCTGGTTGTGTAAACATTAACGAACAGCCGTTATTGGGTATGAGGTACGACTGTAGGCAACCGTTGATGCTTGCAACCGACTTGCCCCAAATTCCCCGATGCATGTTGGGAGCTAAAACCTTGTGCACTAGTCACCCTTTACGCCTTCATTGCTGTGTTTACAAAATATTCAAACTTTTTGCTACTAATTTCTGTTGTTTAATCTTTTTCCTTGCTTACTTTAGTCGATGATTCATGAACTGTTGGATTATATACGATTTATTATTCCTATAAGAGTAGAAAATTATCACACTTGAAGTGTAAGGGAAACATCTGCTTATATTTATAATGTTGTTTCTGAACAGGTAAAAAAGCTTCTCAACGAAGGAATGGATGTTAATGTGACTGCATGGGGCCCTAAATCTAAAGGCGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCATCTCGGAGTGATGGATGAACTGCTTGAGCGTGGTGCCAATATTGATGCCAGAACTAAGGGTGCTTGTGGCTGTAAGTTTTTATGCTTCCCATATAGACTTCCATATTAGTATATCTATCTGTCTAAATTCCAAATTTTGATTTTTTTTATTCATGATTTTGTTCTCCTTAAACCAGGGACACCGCTCCATATTGCAGCTAAAGAGAGGAATAGGGATGCTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACCGGATATCAATGATAGCAGATTTAATCCTCCTCTTCATTACTGCCCAGGACTTGAATGGGCCTATGAGGAAATGAAGAGACTTCGACAGCAAGAATTATCTCCGGAGGACACATCTTGCAGCTCTGAAAATTAA
Protein sequence

>MS.gene72809.t1

MLQERPISLRQSPSRRRLLRPGVDTDDRGWTSLHVYARKGDIKLVKKLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQQELSPEDTSCSSEN