AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82121

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82121.t1 MTR_5g026550 98.256 172 3 0 1 172 1 172 3.52e-126 352
MS.gene82121.t1 MTR_2g048680 30.872 149 94 3 11 156 80 222 4.16e-13 65.1
MS.gene82121.t1 MTR_2g048680 30.872 149 94 3 11 156 160 302 5.04e-13 65.9
MS.gene82121.t1 MTR_5g043640 37.000 100 57 2 26 125 87 180 5.66e-12 62.4
MS.gene82121.t1 MTR_2g096190 38.136 118 64 4 26 141 132 242 2.88e-11 61.2
MS.gene82121.t1 MTR_6g027840 37.000 100 57 2 26 125 394 487 5.25e-11 60.5
MS.gene82121.t1 MTR_3g491870 33.645 107 65 2 27 133 235 335 7.66e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82121.t1 AT5G07840 69.143 175 51 2 1 172 1 175 1.66e-84 246
MS.gene82121.t1 AT5G61230 71.519 158 41 2 1 156 1 156 3.03e-78 231
MS.gene82121.t1 AT2G03430 43.000 100 51 2 26 125 80 173 2.65e-13 65.9
MS.gene82121.t1 AT5G40160 30.556 144 90 4 18 157 171 308 2.55e-11 61.2
MS.gene82121.t1 AT5G53470 32.258 124 75 4 32 155 221 335 2.62e-11 61.2
MS.gene82121.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.06e-11 60.5
MS.gene82121.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.06e-11 60.5
MS.gene82121.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene82121.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene82121.t1 AT5G02620 35.043 117 69 4 26 141 122 232 5.21e-11 60.5
MS.gene82121.t1 AT2G43850 42.708 96 49 2 33 128 82 171 9.74e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTTGTCGCAACGAAAT+TGG 0.234333 5.2:-17327143 None:intergenic
CTTAGTTCTGGCATCAATAT+TGG 0.262291 5.2:-17329032 None:intergenic
TCCTCTCTTTAGCTGCAATA+TGG 0.279082 5.2:-17329183 None:intergenic
GGGGTCACGCCTTTAGATTT+AGG 0.293985 5.2:-17328947 None:intergenic
GGGTCACGCCTTTAGATTTA+GGG 0.308028 5.2:-17328946 None:intergenic
CGAAGGAGGTTGTTGAGGCC+TGG 0.313233 5.2:+17327170 MS.gene82121:CDS
TTGCAGCTAAAGAGAGGAAT+AGG 0.325717 5.2:+17329188 MS.gene82121:CDS
GAAGGAGGTTGTTGAGGCCT+GGG 0.337003 5.2:+17327171 MS.gene82121:CDS
ATTACTGCCCAGGACTTGAA+TGG 0.394427 5.2:+17329290 MS.gene82121:CDS
TAGGGATGCTGTGAAATTCT+TGG 0.430272 5.2:+17329207 MS.gene82121:CDS
TGTGAGAGAAGACATGCTTC+AGG 0.432571 5.2:+17327115 None:intergenic
GCCACAAGCACCCTTAGTTC+TGG 0.432585 5.2:-17329044 None:intergenic
TCATAGGCCCATTCAAGTCC+TGG 0.450896 5.2:-17329298 None:intergenic
AAGTCTCTTCATTTCCTCAT+AGG 0.467730 5.2:-17329314 None:intergenic
CAATATTGATGCCAGAACTA+AGG 0.481725 5.2:+17329033 MS.gene82121:CDS
CTCCACCTTGCTGCCGAAGG+TGG 0.490968 5.2:+17328971 MS.gene82121:CDS
CACTCCGAGATGACCACCTT+CGG 0.497622 5.2:-17328984 None:intergenic
GCTGCCGAAGGTGGTCATCT+CGG 0.507384 5.2:+17328980 MS.gene82121:CDS
TTACTGCCCAGGACTTGAAT+GGG 0.512016 5.2:+17329291 MS.gene82121:CDS
GTGAAATTCTTGGTAGAGAA+TGG 0.513179 5.2:+17329217 MS.gene82121:CDS
CTTCGGCAGCAAGGTGGAGA+GGG 0.515210 5.2:-17328967 None:intergenic
TGCAGCTAAAGAGAGGAATA+GGG 0.519744 5.2:+17329189 MS.gene82121:CDS
AGGACTTGAATGGGCCTATG+AGG 0.531270 5.2:+17329300 MS.gene82121:CDS
CCTCTCCACCTTGCTGCCGA+AGG 0.532516 5.2:+17328968 MS.gene82121:CDS
AATCTGCTATCATTGATATC+CGG 0.533897 5.2:-17329253 None:intergenic
AAAGCTTCTCAACGAAGGAA+TGG 0.535311 5.2:+17328901 MS.gene82121:CDS
TTGATACTGATGATAGAGGT+TGG 0.535680 5.2:+17327195 MS.gene82121:CDS
CCTCCTCTTCATTACTGCCC+AGG 0.539604 5.2:+17329280 MS.gene82121:CDS
AGGTGGTCATCTCGGAGTGA+TGG 0.540638 5.2:+17328988 MS.gene82121:CDS
CTTCATGTTTATGCAAGGAA+AGG 0.547906 5.2:+17327224 MS.gene82121:CDS
AATATTGATGCCAGAACTAA+GGG 0.549077 5.2:+17329034 MS.gene82121:CDS
GCATGGGGCCCTAAATCTAA+AGG 0.550158 5.2:+17328938 MS.gene82121:CDS
AAGGAGGTTGTTGAGGCCTG+GGG 0.557016 5.2:+17327172 MS.gene82121:CDS
GAGCTGCAAGATGTGTCCTC+CGG 0.558005 5.2:-17329355 None:intergenic
CATAGGCCCATTCAAGTCCT+GGG 0.560704 5.2:-17329297 None:intergenic
CCTTCGGCAGCAAGGTGGAG+AGG 0.564920 5.2:-17328968 None:intergenic
AAGGAAAGGTGATATTAAGC+TGG 0.572436 5.2:+17327238 MS.gene82121:CDS
GAATGGAGCATTCTTGCCAC+CGG 0.577208 5.2:+17329234 MS.gene82121:CDS
TGGATGTTAATGTGACTGCA+TGG 0.583622 5.2:+17328921 MS.gene82121:CDS
CCTCACTTCATGTTTATGCA+AGG 0.587941 5.2:+17327219 MS.gene82121:CDS
CTTCGCGAAGGAGGTTGTTG+AGG 0.590897 5.2:+17327165 MS.gene82121:CDS
TCCATATTGCAGCTAAAGAG+AGG 0.596526 5.2:+17329182 MS.gene82121:CDS
CTATCATCAGTATCAACCCC+AGG 0.598054 5.2:-17327188 None:intergenic
TCGACAGCAAGAATTATCTC+CGG 0.599712 5.2:+17329336 MS.gene82121:CDS
GATGACCACCTTCGGCAGCA+AGG 0.610444 5.2:-17328976 None:intergenic
TTCGGCAGCAAGGTGGAGAG+GGG 0.614770 5.2:-17328966 None:intergenic
GCCAGAACTAAGGGTGCTTG+TGG 0.615169 5.2:+17329043 MS.gene82121:CDS
CTCAACAACCTCCTTCGCGA+AGG 0.617083 5.2:-17327164 None:intergenic
GACAAAGTCCTTCGCGAAGG+AGG 0.622537 5.2:+17327156 MS.gene82121:CDS
AGTCCTGGGCAGTAATGAAG+AGG 0.632969 5.2:-17329283 None:intergenic
GAGAAGACATGCTTCAGGAG+AGG 0.635852 5.2:+17327120 None:intergenic
CCTGGGCAGTAATGAAGAGG+AGG 0.640191 5.2:-17329280 None:intergenic
TCTTTAGCTGCAATATGGAG+CGG 0.641697 5.2:-17329178 None:intergenic
GGATGTTAATGTGACTGCAT+GGG 0.642233 5.2:+17328922 MS.gene82121:CDS
TGCGACAAAGTCCTTCGCGA+AGG 0.643930 5.2:+17327153 MS.gene82121:CDS
CTGCTATCATTGATATCCGG+TGG 0.644744 5.2:-17329250 None:intergenic
CCTTGCATAAACATGAAGTG+AGG 0.647744 5.2:-17327219 None:intergenic
GGGGTTGATACTGATGATAG+AGG 0.648484 5.2:+17327191 MS.gene82121:CDS
GATGTTAATGTGACTGCATG+GGG 0.662007 5.2:+17328923 MS.gene82121:CDS
GACCACCTTCGGCAGCAAGG+TGG 0.692091 5.2:-17328973 None:intergenic
ACAGCAAGAATTATCTCCGG+AGG 0.696504 5.2:+17329339 MS.gene82121:CDS
ATGGATGAACTGCTTGAGCG+TGG 0.700290 5.2:+17329007 MS.gene82121:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAAAAATCAAAATT+TGG - chr5.2:17329129-17329148 None:intergenic 10.0%
!!! TTTTTTACTATAATATCATT+AGG + chr5.2:17327647-17327666 MS.gene82121:intron 10.0%
!!! ATATGAATGTTTTATTATGA+GGG + chr5.2:17327349-17327368 MS.gene82121:intron 15.0%
!!! TATATGAATGTTTTATTATG+AGG + chr5.2:17327348-17327367 MS.gene82121:intron 15.0%
!! ATGTATTCTCAAAAACATAA+AGG + chr5.2:17327814-17327833 MS.gene82121:intron 20.0%
!! TATAATATCATTAGGAGATA+AGG + chr5.2:17327655-17327674 MS.gene82121:intron 20.0%
!! TTATACTTAAAAATCCTGTT+AGG - chr5.2:17328433-17328452 None:intergenic 20.0%
!!! AAATTGACTATGTTTTACTT+CGG + chr5.2:17327294-17327313 MS.gene82121:intron 20.0%
!!! TGATAATTTTCTACTCTTAA+AGG - chr5.2:17328821-17328840 None:intergenic 20.0%
! AACCCAATAAATCTAAGTAA+AGG - chr5.2:17327436-17327455 None:intergenic 25.0%
! AAGATAAATAATGTGCAAGA+AGG + chr5.2:17327395-17327414 MS.gene82121:intron 25.0%
! AAGTTATGACTAATGAGTTA+AGG + chr5.2:17328179-17328198 MS.gene82121:intron 25.0%
! ACCCAATAAATCTAAGTAAA+GGG - chr5.2:17327435-17327454 None:intergenic 25.0%
! ACTAATATGGAAGTCTATAT+GGG - chr5.2:17329087-17329106 None:intergenic 25.0%
! AGTTATGACTAATGAGTTAA+GGG + chr5.2:17328180-17328199 MS.gene82121:intron 25.0%
! GACAGATAGATATACTAATA+TGG - chr5.2:17329100-17329119 None:intergenic 25.0%
! TACTAATATGGAAGTCTATA+TGG - chr5.2:17329088-17329107 None:intergenic 25.0%
! TCCATCTACAAAACAAAATA+TGG - chr5.2:17327563-17327582 None:intergenic 25.0%
! TTTGTCTAATATTCACTTCA+AGG + chr5.2:17327621-17327640 MS.gene82121:intron 25.0%
!!! ATATTTTGTTTTGTAGATGG+AGG + chr5.2:17327562-17327581 MS.gene82121:intron 25.0%
!!! TATTTTGTTTTGTAGATGGA+GGG + chr5.2:17327563-17327582 MS.gene82121:intron 25.0%
!!! TTATAATGTTGTTTCTGAAC+AGG + chr5.2:17328874-17328893 MS.gene82121:intron 25.0%
AACAAAATATGGCTTTCAGT+AGG - chr5.2:17327552-17327571 None:intergenic 30.0%
AATATTGATGCCAGAACTAA+GGG + chr5.2:17329034-17329053 MS.gene82121:CDS 30.0%
AATCTGCTATCATTGATATC+CGG - chr5.2:17329256-17329275 None:intergenic 30.0%
AATTTCACAGTGTGCTATAT+TGG + chr5.2:17327942-17327961 MS.gene82121:intron 30.0%
AGGTTGAATTTGAATAGTAC+AGG + chr5.2:17327878-17327897 MS.gene82121:intron 30.0%
ATTAACAAACAGCCGTTATT+GGG + chr5.2:17328565-17328584 MS.gene82121:intron 30.0%
ATTATCACACTTGAAGTGTA+AGG + chr5.2:17328834-17328853 MS.gene82121:intron 30.0%
ATTTCACAGTGTGCTATATT+GGG + chr5.2:17327943-17327962 MS.gene82121:intron 30.0%
GCCCTTTACTTAGATTTATT+GGG + chr5.2:17327431-17327450 MS.gene82121:intron 30.0%
GTACTATTCAAATTCAACCT+AGG - chr5.2:17327878-17327897 None:intergenic 30.0%
TAACTAATTGCAACCATCTA+AGG - chr5.2:17328382-17328401 None:intergenic 30.0%
TAATCCAGCTATATGAATTG+AGG + chr5.2:17327784-17327803 MS.gene82121:intron 30.0%
TGCCCTTTACTTAGATTTAT+TGG + chr5.2:17327430-17327449 MS.gene82121:intron 30.0%
TGGTGAATTTGTAGAAGTAA+CGG + chr5.2:17328214-17328233 MS.gene82121:intron 30.0%
TTAGATGGTTGCAATTAGTT+AGG + chr5.2:17328381-17328400 MS.gene82121:intron 30.0%
TTATCACACTTGAAGTGTAA+GGG + chr5.2:17328835-17328854 MS.gene82121:intron 30.0%
TTCTATACAGCTCTTGTAAA+AGG + chr5.2:17328456-17328475 MS.gene82121:intron 30.0%
! ATTTTGTTCTCCTTAAACCA+GGG + chr5.2:17329152-17329171 MS.gene82121:intron 30.0%
! GCTATCAATCTAGAGTTATT+TGG - chr5.2:17328121-17328140 None:intergenic 30.0%
! GGTCAATTTTCTTGAGATTT+AGG + chr5.2:17327697-17327716 MS.gene82121:intron 30.0%
! TGTTTTACTTCGGAATTTTG+TGG + chr5.2:17327304-17327323 MS.gene82121:intron 30.0%
! TTTTGTAAACACAGCAATGA+AGG - chr5.2:17328696-17328715 None:intergenic 30.0%
!!! GCCATATTTTGTTTTGTAGA+TGG + chr5.2:17327559-17327578 MS.gene82121:intron 30.0%
!!! GGTTAGTTTCTGCATTTTAT+TGG + chr5.2:17327676-17327695 MS.gene82121:intron 30.0%
AACTTGCAATTGAAAGTCGT+TGG + chr5.2:17327972-17327991 MS.gene82121:intron 35.0%
AAGGAAAGGTGATATTAAGC+TGG + chr5.2:17327238-17327257 MS.gene82121:CDS 35.0%
AAGTCTCTTCATTTCCTCAT+AGG - chr5.2:17329317-17329336 None:intergenic 35.0%
AATAGTACAGGACTAAAGAG+GGG + chr5.2:17327890-17327909 MS.gene82121:intron 35.0%
ATGAATCTACTGAGAAGGTA+AGG + chr5.2:17327847-17327866 MS.gene82121:intron 35.0%
CAATATTGATGCCAGAACTA+AGG + chr5.2:17329033-17329052 MS.gene82121:CDS 35.0%
CAATCAGTTGCACATTATGT+TGG + chr5.2:17328017-17328036 MS.gene82121:intron 35.0%
CATTAACAAACAGCCGTTAT+TGG + chr5.2:17328564-17328583 MS.gene82121:intron 35.0%
CTTCATGTTTATGCAAGGAA+AGG + chr5.2:17327224-17327243 MS.gene82121:CDS 35.0%
GAATAGTACAGGACTAAAGA+GGG + chr5.2:17327889-17327908 MS.gene82121:intron 35.0%
GGTGAATTTGTAGAAGTAAC+GGG + chr5.2:17328215-17328234 MS.gene82121:intron 35.0%
GTAAAAAAGCTTCTCAACGA+AGG + chr5.2:17328896-17328915 MS.gene82121:CDS 35.0%
GTCTAATATTCACTTCAAGG+TGG + chr5.2:17327624-17327643 MS.gene82121:intron 35.0%
GTGAAATTCTTGGTAGAGAA+TGG + chr5.2:17329217-17329236 MS.gene82121:CDS 35.0%
TACATTTGTAGAGTGTGAAG+TGG + chr5.2:17328288-17328307 MS.gene82121:intron 35.0%
TGAATAGTACAGGACTAAAG+AGG + chr5.2:17327888-17327907 MS.gene82121:intron 35.0%
TGTACCTCAATTCATATAGC+TGG - chr5.2:17327791-17327810 None:intergenic 35.0%
TGTAGATGAATCTACTGAGA+AGG + chr5.2:17327842-17327861 MS.gene82121:intron 35.0%
TGTTGTGTAGGAATTGTGTT+TGG + chr5.2:17327486-17327505 MS.gene82121:intron 35.0%
TTGATACTGATGATAGAGGT+TGG + chr5.2:17327195-17327214 MS.gene82121:CDS 35.0%
TTTCACAGTGTGCTATATTG+GGG + chr5.2:17327944-17327963 MS.gene82121:intron 35.0%
! ATCATCGACTAAAGTAAGCA+AGG - chr5.2:17328764-17328783 None:intergenic 35.0%
! ATTGATAGCATAGCATTGAG+AGG + chr5.2:17328132-17328151 MS.gene82121:intron 35.0%
! GATTTTGTTCTCCTTAAACC+AGG + chr5.2:17329151-17329170 MS.gene82121:intron 35.0%
! GCTTCAGTTATGAGATTTTG+GGG + chr5.2:17327517-17327536 MS.gene82121:intron 35.0%
! GGCTTCAGTTATGAGATTTT+GGG + chr5.2:17327516-17327535 MS.gene82121:intron 35.0%
! TGGCTTCAGTTATGAGATTT+TGG + chr5.2:17327515-17327534 MS.gene82121:intron 35.0%
! TTGATAGCATAGCATTGAGA+GGG + chr5.2:17328133-17328152 MS.gene82121:intron 35.0%
!! CTTAGTTCTGGCATCAATAT+TGG - chr5.2:17329035-17329054 None:intergenic 35.0%
!!! GGAGGGTTGTTTTTAACATT+TGG + chr5.2:17327580-17327599 MS.gene82121:intron 35.0%
AAAGCTTCTCAACGAAGGAA+TGG + chr5.2:17328901-17328920 MS.gene82121:CDS 40.0%
AGGGGTTGTTTGTAGATTCA+TGG + chr5.2:17328152-17328171 MS.gene82121:intron 40.0%
CAATTTACCGAAGTGATTGC+TGG + chr5.2:17328503-17328522 MS.gene82121:intron 40.0%
CATAAGACCAGCAATCACTT+CGG - chr5.2:17328513-17328532 None:intergenic 40.0%
CCTCACTTCATGTTTATGCA+AGG + chr5.2:17327219-17327238 MS.gene82121:CDS 40.0%
CCTTGCATAAACATGAAGTG+AGG - chr5.2:17327222-17327241 None:intergenic 40.0%
CTAGTCTACACCTTCTATGT+TGG - chr5.2:17328315-17328334 None:intergenic 40.0%
GAGAAGGTAAGGTTATTCCT+AGG + chr5.2:17327858-17327877 MS.gene82121:intron 40.0%
GATGTTAATGTGACTGCATG+GGG + chr5.2:17328923-17328942 MS.gene82121:CDS 40.0%
GGATGTTAATGTGACTGCAT+GGG + chr5.2:17328922-17328941 MS.gene82121:CDS 40.0%
GGTACAGTGAAACATTGGAA+GGG + chr5.2:17327993-17328012 MS.gene82121:intron 40.0%
GTCGATGATTCATGAACTGT+TGG + chr5.2:17328775-17328794 MS.gene82121:intron 40.0%
GTTACGCAGTATTGTTCACA+CGG + chr5.2:17328406-17328425 MS.gene82121:intron 40.0%
TAATGAGTTAAGGGTGACCA+GGG + chr5.2:17328189-17328208 MS.gene82121:intron 40.0%
TAGGGATGCTGTGAAATTCT+TGG + chr5.2:17329207-17329226 MS.gene82121:CDS 40.0%
TCCATATTGCAGCTAAAGAG+AGG + chr5.2:17329182-17329201 MS.gene82121:CDS 40.0%
TCCTCTCTTTAGCTGCAATA+TGG - chr5.2:17329186-17329205 None:intergenic 40.0%
TCGACAGCAAGAATTATCTC+CGG + chr5.2:17329336-17329355 MS.gene82121:CDS 40.0%
TCGTACCTCATACCCAATAA+CGG - chr5.2:17328580-17328599 None:intergenic 40.0%
TCGTTGGTACAGTGAAACAT+TGG + chr5.2:17327988-17328007 MS.gene82121:intron 40.0%
TCTTTAGCTGCAATATGGAG+CGG - chr5.2:17329181-17329200 None:intergenic 40.0%
TGCAGCTAAAGAGAGGAATA+GGG + chr5.2:17329189-17329208 MS.gene82121:CDS 40.0%
TGGATGTTAATGTGACTGCA+TGG + chr5.2:17328921-17328940 MS.gene82121:CDS 40.0%
TGGTACAGTGAAACATTGGA+AGG + chr5.2:17327992-17328011 MS.gene82121:intron 40.0%
TTGCAGCTAAAGAGAGGAAT+AGG + chr5.2:17329188-17329207 MS.gene82121:CDS 40.0%
! AAAGGTGCAAGGAATGGTTA+TGG + chr5.2:17328474-17328493 MS.gene82121:intron 40.0%
! CATAGAAGGTGTAGACTAGA+TGG + chr5.2:17328316-17328335 MS.gene82121:intron 40.0%
! CTTGTAAAAGGTGCAAGGAA+TGG + chr5.2:17328468-17328487 MS.gene82121:intron 40.0%
! GATGACAAGTTTGTTTGACG+AGG + chr5.2:17328338-17328357 MS.gene82121:intron 40.0%
! TGATAGCATAGCATTGAGAG+GGG + chr5.2:17328134-17328153 MS.gene82121:intron 40.0%
!! GGAATTGTGTTTGGTTTGAG+TGG + chr5.2:17327495-17327514 MS.gene82121:intron 40.0%
!!! TTTTAGCTCCCAACATGCAT+CGG - chr5.2:17328648-17328667 None:intergenic 40.0%
AACAGCCGTTATTGGGTATG+AGG + chr5.2:17328572-17328591 MS.gene82121:intron 45.0%
AACATGCATCGGGGAATTTG+GGG - chr5.2:17328637-17328656 None:intergenic 45.0%
AAGTCGGTTGCAAGCATCAA+CGG - chr5.2:17328613-17328632 None:intergenic 45.0%
AATGAGTTAAGGGTGACCAG+GGG + chr5.2:17328190-17328209 MS.gene82121:intron 45.0%
ACAACCAGAACTGTGTCAAC+TGG - chr5.2:17328539-17328558 None:intergenic 45.0%
ACAGCAAGAATTATCTCCGG+AGG + chr5.2:17329339-17329358 MS.gene82121:CDS 45.0%
ATTACTGCCCAGGACTTGAA+TGG + chr5.2:17329290-17329309 MS.gene82121:CDS 45.0%
ATTGTTCACACGGACCTAAC+AGG + chr5.2:17328416-17328435 MS.gene82121:intron 45.0%
CAAATTCCCCGATGCATGTT+GGG + chr5.2:17328637-17328656 MS.gene82121:intron 45.0%
CAACATGCATCGGGGAATTT+GGG - chr5.2:17328638-17328657 None:intergenic 45.0%
CTAATGAGTTAAGGGTGACC+AGG + chr5.2:17328188-17328207 MS.gene82121:intron 45.0%
CTATCATCAGTATCAACCCC+AGG - chr5.2:17327191-17327210 None:intergenic 45.0%
CTGCTATCATTGATATCCGG+TGG - chr5.2:17329253-17329272 None:intergenic 45.0%
GACAGTTATGACCAGAAGAG+GGG + chr5.2:17328039-17328058 MS.gene82121:intron 45.0%
GAGATTCGTGTGTGTTGTGT+AGG + chr5.2:17327474-17327493 MS.gene82121:intron 45.0%
GGACAGTTATGACCAGAAGA+GGG + chr5.2:17328038-17328057 MS.gene82121:intron 45.0%
GGACTTTGTCGCAACGAAAT+TGG - chr5.2:17327146-17327165 None:intergenic 45.0%
GGGTCACGCCTTTAGATTTA+GGG - chr5.2:17328949-17328968 None:intergenic 45.0%
GTGAAGTGGTCCAACATAGA+AGG + chr5.2:17328302-17328321 MS.gene82121:intron 45.0%
TAAAGGGTGACTAGTGCACA+AGG - chr5.2:17328671-17328690 None:intergenic 45.0%
TCAGAGTCACACTTCTAGAC+TGG - chr5.2:17328247-17328266 None:intergenic 45.0%
TCTACAAATTCACCAACCCC+TGG - chr5.2:17328209-17328228 None:intergenic 45.0%
TGACTGGCAAGATCCTTAGA+TGG + chr5.2:17328366-17328385 MS.gene82121:intron 45.0%
TGGACAGTTATGACCAGAAG+AGG + chr5.2:17328037-17328056 MS.gene82121:intron 45.0%
TTACTGCCCAGGACTTGAAT+GGG + chr5.2:17329291-17329310 MS.gene82121:CDS 45.0%
! ACACAGCAATGAAGGCGTAA+AGG - chr5.2:17328688-17328707 None:intergenic 45.0%
! CACAGCAATGAAGGCGTAAA+GGG - chr5.2:17328687-17328706 None:intergenic 45.0%
! CAGCTCTTGTAAAAGGTGCA+AGG + chr5.2:17328463-17328482 MS.gene82121:intron 45.0%
! TTTAGCTCCCAACATGCATC+GGG - chr5.2:17328647-17328666 None:intergenic 45.0%
!! GGGGTTGATACTGATGATAG+AGG + chr5.2:17327191-17327210 MS.gene82121:CDS 45.0%
AGGACTTGAATGGGCCTATG+AGG + chr5.2:17329300-17329319 MS.gene82121:CDS 50.0%
AGTCCTGGGCAGTAATGAAG+AGG - chr5.2:17329286-17329305 None:intergenic 50.0%
ATGGATGAACTGCTTGAGCG+TGG + chr5.2:17329007-17329026 MS.gene82121:CDS 50.0%
CATAGGCCCATTCAAGTCCT+GGG - chr5.2:17329300-17329319 None:intergenic 50.0%
CCAAATTCCCCGATGCATGT+TGG + chr5.2:17328636-17328655 MS.gene82121:intron 50.0%
CCAACATGCATCGGGGAATT+TGG - chr5.2:17328639-17328658 None:intergenic 50.0%
GAGACCAGTTGACACAGTTC+TGG + chr5.2:17328532-17328551 MS.gene82121:intron 50.0%
GCATGGGGCCCTAAATCTAA+AGG + chr5.2:17328938-17328957 MS.gene82121:CDS 50.0%
GGGGTCACGCCTTTAGATTT+AGG - chr5.2:17328950-17328969 None:intergenic 50.0%
TCATAGGCCCATTCAAGTCC+TGG - chr5.2:17329301-17329320 None:intergenic 50.0%
TGGGTATGAGGTACGACTGT+AGG + chr5.2:17328584-17328603 MS.gene82121:intron 50.0%
TTAGCTCCCAACATGCATCG+GGG - chr5.2:17328646-17328665 None:intergenic 50.0%
TTATGACCAGAAGAGGGGCT+TGG + chr5.2:17328044-17328063 MS.gene82121:intron 50.0%
! GAATGGAGCATTCTTGCCAC+CGG + chr5.2:17329234-17329253 MS.gene82121:CDS 50.0%
!! ATGTGCAGAGCAGCTCTAGA+TGG + chr5.2:17328081-17328100 MS.gene82121:intron 50.0%
!! TGTGCAGAGCAGCTCTAGAT+GGG + chr5.2:17328082-17328101 MS.gene82121:intron 50.0%
AAGGAGGTTGTTGAGGCCTG+GGG + chr5.2:17327172-17327191 MS.gene82121:CDS 55.0%
AGGTGGTCATCTCGGAGTGA+TGG + chr5.2:17328988-17329007 MS.gene82121:CDS 55.0%
AGTTAAGGGTGACCAGGGGT+TGG + chr5.2:17328194-17328213 MS.gene82121:intron 55.0%
ATACTGCCAAGCCCCTCTTC+TGG - chr5.2:17328053-17328072 None:intergenic 55.0%
CACTCCGAGATGACCACCTT+CGG - chr5.2:17328987-17329006 None:intergenic 55.0%
CCTCCTCTTCATTACTGCCC+AGG + chr5.2:17329280-17329299 MS.gene82121:CDS 55.0%
CCTGGGCAGTAATGAAGAGG+AGG - chr5.2:17329283-17329302 None:intergenic 55.0%
CTCAACAACCTCCTTCGCGA+AGG - chr5.2:17327167-17327186 None:intergenic 55.0%
CTTCGCGAAGGAGGTTGTTG+AGG + chr5.2:17327165-17327184 MS.gene82121:CDS 55.0%
GAAGGAGGTTGTTGAGGCCT+GGG + chr5.2:17327171-17327190 MS.gene82121:CDS 55.0%
GACAAAGTCCTTCGCGAAGG+AGG + chr5.2:17327156-17327175 MS.gene82121:CDS 55.0%
GAGCTGCAAGATGTGTCCTC+CGG - chr5.2:17329358-17329377 None:intergenic 55.0%
GCCACAAGCACCCTTAGTTC+TGG - chr5.2:17329047-17329066 None:intergenic 55.0%
GTACAGGACTAAAGAGGGGC+AGG + chr5.2:17327894-17327913 MS.gene82121:intron 55.0%
GTTTGACGAGGTTGCGTGAC+TGG + chr5.2:17328350-17328369 MS.gene82121:intron 55.0%
TGCGACAAAGTCCTTCGCGA+AGG + chr5.2:17327153-17327172 MS.gene82121:CDS 55.0%
! TCGGGGAATTTGGGGCAAGT+CGG - chr5.2:17328629-17328648 None:intergenic 55.0%
!! GCCAGAACTAAGGGTGCTTG+TGG + chr5.2:17329043-17329062 MS.gene82121:CDS 55.0%
!! GTGCAGAGCAGCTCTAGATG+GGG + chr5.2:17328083-17328102 MS.gene82121:intron 55.0%
CGAAGGAGGTTGTTGAGGCC+TGG + chr5.2:17327170-17327189 MS.gene82121:CDS 60.0%
CTTCGGCAGCAAGGTGGAGA+GGG - chr5.2:17328970-17328989 None:intergenic 60.0%
GATGACCACCTTCGGCAGCA+AGG - chr5.2:17328979-17328998 None:intergenic 60.0%
GCAATATGGAGCGGTGTCCC+TGG - chr5.2:17329172-17329191 None:intergenic 60.0%
GCTGCCGAAGGTGGTCATCT+CGG + chr5.2:17328980-17328999 MS.gene82121:CDS 60.0%
GGAGCGGTGTCCCTGGTTTA+AGG - chr5.2:17329165-17329184 None:intergenic 60.0%
TTCGGCAGCAAGGTGGAGAG+GGG - chr5.2:17328969-17328988 None:intergenic 60.0%
CCTCTCCACCTTGCTGCCGA+AGG + chr5.2:17328968-17328987 MS.gene82121:CDS 65.0%
CCTTCGGCAGCAAGGTGGAG+AGG - chr5.2:17328971-17328990 None:intergenic 65.0%
CTCCACCTTGCTGCCGAAGG+TGG + chr5.2:17328971-17328990 MS.gene82121:CDS 65.0%
GACCACCTTCGGCAGCAAGG+TGG - chr5.2:17328976-17328995 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 17327128 17329387 17327128 ID=MS.gene82121
chr5.2 mRNA 17327128 17329387 17327128 ID=MS.gene82121.t1;Parent=MS.gene82121
chr5.2 exon 17327128 17327259 17327128 ID=MS.gene82121.t1.exon1;Parent=MS.gene82121.t1
chr5.2 CDS 17327128 17327259 17327128 ID=cds.MS.gene82121.t1;Parent=MS.gene82121.t1
chr5.2 exon 17328896 17329067 17328896 ID=MS.gene82121.t1.exon2;Parent=MS.gene82121.t1
chr5.2 CDS 17328896 17329067 17328896 ID=cds.MS.gene82121.t1;Parent=MS.gene82121.t1
chr5.2 exon 17329173 17329387 17329173 ID=MS.gene82121.t1.exon3;Parent=MS.gene82121.t1
chr5.2 CDS 17329173 17329387 17329173 ID=cds.MS.gene82121.t1;Parent=MS.gene82121.t1
Gene Sequence

>MS.gene82121

ATGCTTCAGGAGAGGCCAATTTCGTTGCGACAAAGTCCTTCGCGAAGGAGGTTGTTGAGGCCTGGGGTTGATACTGATGATAGAGGTTGGACCTCACTTCATGTTTATGCAAGGAAAGGTGATATTAAGCTGGTAAGTTCTTTTCTTTTGTTCATTTTTTTTATGCAAATTGACTATGTTTTACTTCGGAATTTTGTGGATAAAATTCGAGAAATGTATGTATATGAATGTTTTATTATGAGGGTAAGTTTGATTTTGACGTGCACAAAGATAAATAATGTGCAAGAAGGAAAACTCAAGTGTGCCCTTTACTTAGATTTATTGGGTTGATTGAATTTGAGATATAGAGATTCGTGTGTGTTGTGTAGGAATTGTGTTTGGTTTGAGTGGCTTCAGTTATGAGATTTTGGGGCTTTTGTTTCCTACTGAAAGCCATATTTTGTTTTGTAGATGGAGGGTTGTTTTTAACATTTGGTTACATCTCTATCATATATTTGTCTAATATTCACTTCAAGGTGGTTTTTTACTATAATATCATTAGGAGATAAGGTTAGTTTCTGCATTTTATTGGTCAATTTTCTTGAGATTTAGGTGTGTAGCATATCTCTCAACTTTTTTATCACATAATTGAGCTATATGAAACGAGTTTTGTCACATAATCCAGCTATATGAATTGAGGTACACATATGTATTCTCAAAAACATAAAGGCTCAATGTAGATGAATCTACTGAGAAGGTAAGGTTATTCCTAGGTTGAATTTGAATAGTACAGGACTAAAGAGGGGCAGGACAGTATGCAAACAATGTATAGAACAATTTCACAGTGTGCTATATTGGGGCAAATAACTTGCAATTGAAAGTCGTTGGTACAGTGAAACATTGGAAGGGACAATCAGTTGCACATTATGTTGGACAGTTATGACCAGAAGAGGGGCTTGGCAGTATGTCAAACAATGTGCAGAGCAGCTCTAGATGGGGCTATGTGTATTGCCAAATAACTCTAGATTGATAGCATAGCATTGAGAGGGGTTGTTTGTAGATTCATGGTCAGAAGTTATGACTAATGAGTTAAGGGTGACCAGGGGTTGGTGAATTTGTAGAAGTAACGGGTATTCTCCAGTCTAGAAGTGTGACTCTGATTCTGTCAGACATGTAGTATATACATTTGTAGAGTGTGAAGTGGTCCAACATAGAAGGTGTAGACTAGATGGATGACAAGTTTGTTTGACGAGGTTGCGTGACTGGCAAGATCCTTAGATGGTTGCAATTAGTTAGGAAGTTACGCAGTATTGTTCACACGGACCTAACAGGATTTTTAAGTATAAATGTTCTATACAGCTCTTGTAAAAGGTGCAAGGAATGGTTATGGTTACTGCAATTTACCGAAGTGATTGCTGGTCTTATGAGACCAGTTGACACAGTTCTGGTTGTGTAAACATTAACAAACAGCCGTTATTGGGTATGAGGTACGACTGTAGGCAACCGTTGATGCTTGCAACCGACTTGCCCCAAATTCCCCGATGCATGTTGGGAGCTAAAACCTTGTGCACTAGTCACCCTTTACGCCTTCATTGCTGTGTTTACAAAATATTCAAACTTTTTGCTACTAATTTCTGTTGTGTTTAATCTTTTTCCTTGCTTACTTTAGTCGATGATTCATGAACTGTTGGATTATATACGATTTATTATTCCTTTAAGAGTAGAAAATTATCACACTTGAAGTGTAAGGGAAACATCTGCTTATATTTATAATGTTGTTTCTGAACAGGTAAAAAAGCTTCTCAACGAAGGAATGGATGTTAATGTGACTGCATGGGGCCCTAAATCTAAAGGCGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCATCTCGGAGTGATGGATGAACTGCTTGAGCGTGGTGCCAATATTGATGCCAGAACTAAGGGTGCTTGTGGCTGTAAGTTTTTATGCTTCCCATATAGACTTCCATATTAGTATATCTATCTGTCTAAATTCCAAATTTTGATTTTTTTTATTCATGATTTTGTTCTCCTTAAACCAGGGACACCGCTCCATATTGCAGCTAAAGAGAGGAATAGGGATGCTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACCGGATATCAATGATAGCAGATTTAATCCTCCTCTTCATTACTGCCCAGGACTTGAATGGGCCTATGAGGAAATGAAGAGACTTCGACAGCAAGAATTATCTCCGGAGGACACATCTTGCAGCTCTGAAAATTAA
Protein sequence

>MS.gene82121.t1

MLQERPISLRQSPSRRRLLRPGVDTDDRGWTSLHVYARKGDIKLVKKLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKRLRQQELSPEDTSCSSEN