Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034158.t1 | KAD2394000.1 | 76.3 | 936 | 207 | 4 | 9 | 930 | 7 | 941 | 0.00E+00 | 1431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034158.t1 | Q9C512 | 78.8 | 552 | 105 | 5 | 1 | 551 | 1 | 541 | 4.1e-258 | 892.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034158.t1 | A0A124SC76 | 74.9 | 940 | 191 | 7 | 5 | 930 | 2 | 910 | 0.0e+00 | 1396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45489 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene071169 | PPI |
| MS.gene31156 | MS.gene034158 | PPI |
| MS.gene053151 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene81617 | PPI |
| MS.gene070492 | MS.gene034158 | PPI |
| MS.gene057883 | MS.gene034158 | PPI |
| MS.gene016742 | MS.gene034158 | PPI |
| MS.gene070510 | MS.gene034158 | PPI |
| MS.gene81622 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene070503 | PPI |
| MS.gene016743 | MS.gene034158 | PPI |
| MS.gene37911 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene016758 | PPI |
| MS.gene30955 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene070511 | PPI |
| MS.gene81620 | MS.gene034158 | PPI |
| MS.gene021114 | MS.gene034158 | PPI |
| MS.gene070505 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene057884 | PPI |
| MS.gene057886 | MS.gene034158 | PPI |
| MS.gene070509 | MS.gene034158 | PPI |
| MS.gene004045 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene41176 | PPI |
| MS.gene034158 | MS.gene67840 | PPI |
| MS.gene054576 | MS.gene034158 | PPI |
| MS.gene070507 | MS.gene034158 | PPI |
| MS.gene034158 | MS.gene052122 | PPI |
| MS.gene81615 | MS.gene034158 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034158.t1 | MTR_4g008140 | 97.909 | 574 | 12 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1174 |
| MS.gene034158.t1 | MTR_4g127310 | 68.675 | 581 | 173 | 2 | 1 | 574 | 1 | 579 | 0.0 | 825 |
| MS.gene034158.t1 | MTR_4g008150 | 99.174 | 363 | 3 | 0 | 575 | 937 | 76 | 438 | 0.0 | 740 |
| MS.gene034158.t1 | MTR_2g019520 | 42.004 | 519 | 237 | 16 | 87 | 546 | 114 | 627 | 2.61e-107 | 346 |
| MS.gene034158.t1 | MTR_1g076280 | 31.365 | 491 | 289 | 13 | 107 | 576 | 46 | 509 | 1.09e-53 | 197 |
| MS.gene034158.t1 | MTR_1g076280 | 31.365 | 491 | 289 | 13 | 107 | 576 | 46 | 509 | 4.36e-53 | 196 |
| MS.gene034158.t1 | MTR_4g106370 | 30.213 | 470 | 269 | 11 | 110 | 548 | 39 | 480 | 1.19e-47 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034158.t1 | AT1G51590 | 78.804 | 552 | 105 | 5 | 1 | 551 | 1 | 541 | 0.0 | 885 |
| MS.gene034158.t1 | AT3G21160 | 74.914 | 582 | 131 | 5 | 1 | 578 | 1 | 571 | 0.0 | 879 |
| MS.gene034158.t1 | AT1G51590 | 85.812 | 437 | 61 | 1 | 116 | 551 | 1 | 437 | 0.0 | 798 |
| MS.gene034158.t1 | AT1G51610 | 83.425 | 362 | 59 | 1 | 575 | 936 | 96 | 456 | 0.0 | 605 |
| MS.gene034158.t1 | AT3G21160 | 72.356 | 416 | 104 | 3 | 1 | 415 | 1 | 406 | 0.0 | 602 |
| MS.gene034158.t1 | AT1G30000 | 43.145 | 496 | 222 | 14 | 108 | 546 | 128 | 620 | 1.54e-109 | 352 |
| MS.gene034158.t1 | AT1G30000 | 43.145 | 496 | 222 | 14 | 108 | 546 | 148 | 640 | 3.75e-109 | 351 |
| MS.gene034158.t1 | AT5G43710 | 30.687 | 466 | 272 | 8 | 107 | 549 | 39 | 476 | 1.06e-52 | 194 |
| MS.gene034158.t1 | AT5G43710 | 31.398 | 465 | 270 | 9 | 107 | 549 | 39 | 476 | 1.36e-52 | 194 |
| MS.gene034158.t1 | AT5G43710 | 31.398 | 465 | 270 | 9 | 107 | 549 | 39 | 476 | 4.54e-52 | 194 |
| MS.gene034158.t1 | AT1G27520 | 28.119 | 537 | 331 | 10 | 107 | 615 | 36 | 545 | 4.73e-52 | 192 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGTACATACGATCTTTC+AGG | 0.182763 | 4.3:-87359244 | MS.gene034158:CDS |
| TCTTGATACACTATACATTA+TGG | 0.190941 | 4.3:-87359974 | MS.gene034158:CDS |
| AATAACCGACTTGCATAATT+TGG | 0.194478 | 4.3:-87360843 | MS.gene034158:intron |
| GAGAACTATTTCTTTCATTC+TGG | 0.205349 | 4.3:-87356344 | MS.gene034158:CDS |
| TCAAAGCATGTCGGTTTCTT+TGG | 0.215502 | 4.3:+87348024 | None:intergenic |
| TGCTCCAGGGATGCTTGCTT+TGG | 0.216455 | 4.3:-87356919 | MS.gene034158:CDS |
| TGAAATTAAGAGACTATATT+TGG | 0.222526 | 4.3:-87348854 | MS.gene034158:CDS |
| ATGAATACTTGCTTAAAGTT+TGG | 0.236436 | 4.3:-87357459 | MS.gene034158:CDS |
| ACAAACATTATGTCAAATTA+TGG | 0.248542 | 4.3:-87346666 | MS.gene034158:intron |
| TCCTTTCTGCCACCTATTCT+AGG | 0.259317 | 4.3:+87355621 | None:intergenic |
| AAAACCTTCTGCTGATACTT+TGG | 0.271291 | 4.3:+87357856 | None:intergenic |
| TTTCAAGGGTGAGAGTATTT+TGG | 0.274453 | 4.3:-87357935 | MS.gene034158:intron |
| TTGTAGGCGCTACTTGCTTA+TGG | 0.278218 | 4.3:-87349727 | MS.gene034158:intron |
| TCTGGTGCTACGGTCGTTAA+TGG | 0.282960 | 4.3:-87349244 | MS.gene034158:CDS |
| TGCTATTGCTGGGGCATCAT+TGG | 0.283043 | 4.3:-87348222 | MS.gene034158:CDS |
| GGGATCATAAATGGCATTTC+CGG | 0.285838 | 4.3:+87348184 | None:intergenic |
| TTTCACTCAAATTTGGAGTA+TGG | 0.291870 | 4.3:-87350095 | MS.gene034158:CDS |
| GTAACTGGCCTTGCTATTGC+TGG | 0.292764 | 4.3:-87348233 | MS.gene034158:CDS |
| TTCAGATTTAAAGCAGAAAT+AGG | 0.297179 | 4.3:-87347806 | MS.gene034158:intron |
| GCTTTGGGATCATCTGGTTA+TGG | 0.305745 | 4.3:-87356903 | MS.gene034158:CDS |
| GTTTCTTTGGATAAGAAATA+TGG | 0.306940 | 4.3:+87348037 | None:intergenic |
| GATTGTAAAAGTGAAGTTAT+TGG | 0.310454 | 4.3:-87347839 | MS.gene034158:CDS |
| CTCTAGCTGTAAAACTTTAT+AGG | 0.313818 | 4.3:-87357420 | MS.gene034158:intron |
| TGAATACTTGCTTAAAGTTT+GGG | 0.318324 | 4.3:-87357458 | MS.gene034158:CDS |
| ATTTACCTGGTTTGCAAAAT+CGG | 0.318454 | 4.3:+87350023 | None:intergenic |
| GACAAGTTGATAATGTTATA+AGG | 0.323001 | 4.3:+87359145 | None:intergenic |
| GTCAATAGCTTTGGAGGTCT+TGG | 0.324765 | 4.3:-87360015 | MS.gene034158:CDS |
| TTCTCATTTGAGTTCTTAAC+AGG | 0.325798 | 4.3:+87355657 | None:intergenic |
| TGAGCCTATGGGATCATAAA+TGG | 0.332553 | 4.3:+87348175 | None:intergenic |
| GCTCCAGGGATGCTTGCTTT+GGG | 0.341072 | 4.3:-87356918 | MS.gene034158:CDS |
| TGAGTAGCAGTAGCAGTAAA+TGG | 0.341324 | 4.3:-87362295 | MS.gene034158:CDS |
| ATTGTAAAAGTGAAGTTATT+GGG | 0.342473 | 4.3:-87347838 | MS.gene034158:CDS |
| TCCCTTCGAGTCAACCTTCC+CGG | 0.344813 | 4.3:+87360425 | None:intergenic |
| CTTGATACACTATACATTAT+GGG | 0.345860 | 4.3:-87359973 | MS.gene034158:CDS |
| ATCTTGGTTGGCAACTTACT+TGG | 0.350374 | 4.3:-87348152 | MS.gene034158:CDS |
| ATCTTGGTATGTCTTGTTGC+CGG | 0.354146 | 4.3:+87356134 | None:intergenic |
| AAACCTTCTGCTGATACTTT+GGG | 0.354260 | 4.3:+87357857 | None:intergenic |
| TTGAATACCCATTCATCTAA+TGG | 0.357605 | 4.3:+87355726 | None:intergenic |
| GGATACCAGGAACAAGATTC+TGG | 0.357638 | 4.3:+87346510 | None:intergenic |
| CAGGATGGTGCTGCAGTAAC+TGG | 0.366078 | 4.3:-87348248 | MS.gene034158:CDS |
| ATGCTTGCTTTGGGATCATC+TGG | 0.372484 | 4.3:-87356909 | MS.gene034158:CDS |
| GAATATGCAATTAGCAGCTT+TGG | 0.374567 | 4.3:-87349051 | MS.gene034158:CDS |
| CGCATAGAGTCGGGCTATGT+TGG | 0.374873 | 4.3:-87356072 | MS.gene034158:CDS |
| AGAACTATTTCTTTCATTCT+GGG | 0.375064 | 4.3:-87356343 | MS.gene034158:CDS |
| CATTAGGAAGTGAAGTTGAT+AGG | 0.380993 | 4.3:-87346547 | MS.gene034158:CDS |
| TTCCCTTCTCTGGATATCAA+TGG | 0.381049 | 4.3:+87360365 | None:intergenic |
| CGGTCATTCCATTAGATGAA+TGG | 0.381669 | 4.3:-87355734 | MS.gene034158:CDS |
| TCCCTTCTCTGGATATCAAT+GGG | 0.384629 | 4.3:+87360366 | None:intergenic |
| TTGAGTCACTCTTCTACCTT+TGG | 0.392975 | 4.3:-87356164 | MS.gene034158:CDS |
| CAGGTCCACTAAAGAGGTCT+TGG | 0.393953 | 4.3:-87360394 | MS.gene034158:CDS |
| GACTTTATTTGCAGCTTGCT+TGG | 0.396144 | 4.3:-87356412 | MS.gene034158:intron |
| CATTTGGCGCCATGGGTGAT+AGG | 0.398474 | 4.3:-87357632 | MS.gene034158:intron |
| TCCTATCACATTTGGCGCCA+TGG | 0.401558 | 4.3:-87357640 | MS.gene034158:CDS |
| CAGCTGGGTCGCAAACTCTC+TGG | 0.407952 | 4.3:-87359466 | MS.gene034158:CDS |
| GAGGAAGTAGTTACAGCATT+AGG | 0.409971 | 4.3:-87346563 | MS.gene034158:CDS |
| ATAGGAAGTAATCCATCATC+AGG | 0.411882 | 4.3:+87357699 | None:intergenic |
| ATAAAGAGTATCAACCTGTT+TGG | 0.417733 | 4.3:+87347057 | None:intergenic |
| GCAACAAGACATACCAAGAT+TGG | 0.418963 | 4.3:-87356131 | MS.gene034158:CDS |
| TGATCCCATAGGCTCAATCT+TGG | 0.418985 | 4.3:-87348168 | MS.gene034158:CDS |
| CTGCTGATACTTTGGGTCTC+CGG | 0.423512 | 4.3:+87357864 | None:intergenic |
| AATAAAACATTCCCTGATGA+TGG | 0.424362 | 4.3:-87357711 | MS.gene034158:CDS |
| TCACCACAATCCAGAGTAGT+AGG | 0.425238 | 4.3:-87359274 | MS.gene034158:intron |
| GCCAACCAAGATTGAGCCTA+TGG | 0.425930 | 4.3:+87348163 | None:intergenic |
| TTGCTTAAAGTTTGGGTACA+AGG | 0.427453 | 4.3:-87357451 | MS.gene034158:CDS |
| ACACAGAAGCACACCCTTTG+AGG | 0.428655 | 4.3:-87355704 | MS.gene034158:CDS |
| AAAAGTGGTGTCAATAGCTT+TGG | 0.429770 | 4.3:-87360024 | MS.gene034158:CDS |
| TTCTACCTTTGGCGCCTAAC+CGG | 0.433958 | 4.3:-87356153 | MS.gene034158:CDS |
| AGCCATGGACGACCACGATA+TGG | 0.434755 | 4.3:-87347994 | MS.gene034158:CDS |
| GGCTACTCTCCTATCACATT+TGG | 0.436591 | 4.3:-87357648 | MS.gene034158:CDS |
| AGAAACCGACATGCTTTGAT+TGG | 0.437341 | 4.3:-87348020 | MS.gene034158:CDS |
| AAAGGACTGGACGTGAGGAC+TGG | 0.438840 | 4.3:-87347081 | MS.gene034158:CDS |
| GGTCATTGATATCTGCTGTT+GGG | 0.440670 | 4.3:-87349282 | MS.gene034158:CDS |
| AGAATCTTGTTCCTGGTATC+CGG | 0.441452 | 4.3:-87346508 | MS.gene034158:CDS |
| ATTCCAAGGAAAGATTTGTT+TGG | 0.441601 | 4.3:-87349303 | MS.gene034158:CDS |
| TAACTGGCCTTGCTATTGCT+GGG | 0.442426 | 4.3:-87348232 | MS.gene034158:CDS |
| TGTGGTTCATTCGTCATTGA+AGG | 0.442746 | 4.3:-87349023 | MS.gene034158:intron |
| ACCATACCTGTAGTTCATCT+TGG | 0.442790 | 4.3:+87360286 | None:intergenic |
| GAGATCCAGAATCTTGTTCC+TGG | 0.444471 | 4.3:-87346515 | MS.gene034158:CDS |
| GAACTAGCGTGCTTTGCTCC+AGG | 0.446640 | 4.3:-87356933 | MS.gene034158:CDS |
| ATTATCCAAGACCTCTTTAG+TGG | 0.450428 | 4.3:+87360389 | None:intergenic |
| CAACAAGACATACCAAGATT+GGG | 0.450877 | 4.3:-87356130 | MS.gene034158:CDS |
| GCTGCTAATTGCATATTCTC+AGG | 0.452269 | 4.3:+87349056 | None:intergenic |
| TGACCAAACAAATCTTTCCT+TGG | 0.454522 | 4.3:+87349300 | None:intergenic |
| TTCCATATCGTGGTCGTCCA+TGG | 0.455179 | 4.3:+87347992 | None:intergenic |
| GTTTATGTCACTTGCGGAAG+AGG | 0.455285 | 4.3:-87356862 | MS.gene034158:intron |
| ATATATTCCAACCCCAATCT+TGG | 0.459533 | 4.3:+87356118 | None:intergenic |
| GGATGACTCTGTTGGATTGT+GGG | 0.460611 | 4.3:+87346469 | None:intergenic |
| AAGAGTGACTCAACTGTCTC+TGG | 0.462962 | 4.3:+87356174 | None:intergenic |
| GGTCATTCCATTAGATGAAT+GGG | 0.464425 | 4.3:-87355733 | MS.gene034158:CDS |
| ACGTGAGGACTGGGCCAAAC+AGG | 0.464464 | 4.3:-87347071 | MS.gene034158:intron |
| TCAAAACTTGTGGGTTGCAC+AGG | 0.464521 | 4.3:-87349218 | MS.gene034158:intron |
| TGAAGTTGATAGGTTAGAGA+TGG | 0.465484 | 4.3:-87346537 | MS.gene034158:CDS |
| AATCCTCATAGTGGAACAAC+AGG | 0.466061 | 4.3:-87357669 | MS.gene034158:CDS |
| CTTGACAAGGATGACTCTGT+TGG | 0.467741 | 4.3:+87346461 | None:intergenic |
| AAAAGTGAAGTTATTGGGCC+TGG | 0.468502 | 4.3:-87347833 | MS.gene034158:CDS |
| AACTCAATAATCTTAGCTGC+TGG | 0.468672 | 4.3:+87351789 | None:intergenic |
| TAATCTATCTGCAATATCTC+TGG | 0.470494 | 4.3:+87359198 | None:intergenic |
| AAGGTCTGTTAAGTTTGATT+CGG | 0.471042 | 4.3:-87357125 | MS.gene034158:CDS |
| GATCCCAAAGCAAGCATCCC+TGG | 0.472500 | 4.3:+87356915 | None:intergenic |
| CAAGGACGTGCACACAATCC+TGG | 0.473872 | 4.3:-87359121 | MS.gene034158:CDS |
| GCACACAATCCTGGATGGAC+CGG | 0.474244 | 4.3:-87359112 | MS.gene034158:CDS |
| GGTATGTCTTGTTGCCGGTT+AGG | 0.474868 | 4.3:+87356139 | None:intergenic |
| ACTCAACTGTCTCTGGCCTC+AGG | 0.476268 | 4.3:+87356181 | None:intergenic |
| AAAGTGCATGATGGCACTGC+CGG | 0.479791 | 4.3:-87360444 | MS.gene034158:CDS |
| TAGCCTGTTGTTCCACTATG+AGG | 0.480434 | 4.3:+87357666 | None:intergenic |
| CCTATCACATTTGGCGCCAT+GGG | 0.481889 | 4.3:-87357639 | MS.gene034158:CDS |
| GGACGCTTCAAGTAATAAGC+TGG | 0.482423 | 4.3:+87362260 | None:intergenic |
| ATCTATATCAATCCTCATAG+TGG | 0.483288 | 4.3:-87357678 | MS.gene034158:CDS |
| TTGTCTTGGTTCTGGTGCTA+CGG | 0.483338 | 4.3:-87349254 | MS.gene034158:CDS |
| GTTAGCTGAAGTTGTGCATT+CGG | 0.485086 | 4.3:-87350049 | MS.gene034158:CDS |
| CAAAATTATCTTCAAAGGAC+TGG | 0.486998 | 4.3:-87347094 | MS.gene034158:CDS |
| AGTGGTGTCAATAGCTTTGG+AGG | 0.491088 | 4.3:-87360021 | MS.gene034158:CDS |
| ATAAACTTCTGCGAATCATC+AGG | 0.492014 | 4.3:+87356879 | None:intergenic |
| CTATGAGGATTGATATAGAT+AGG | 0.493737 | 4.3:+87357681 | None:intergenic |
| CCCATGGCGCCAAATGTGAT+AGG | 0.494378 | 4.3:+87357639 | None:intergenic |
| GGTTGGCAACTTACTTGGAA+TGG | 0.494921 | 4.3:-87348147 | MS.gene034158:intron |
| TCAACTCCAACAAAATTAGC+TGG | 0.498371 | 4.3:-87356368 | MS.gene034158:CDS |
| TTAGCAGCTTTGGTGTTATG+TGG | 0.498592 | 4.3:-87349041 | MS.gene034158:CDS |
| CAGATAGATTACTGCCTGCA+TGG | 0.503951 | 4.3:-87359186 | MS.gene034158:CDS |
| TAATGGAGTTCAAAACTTGT+GGG | 0.504503 | 4.3:-87349227 | MS.gene034158:CDS |
| TTAATGGAGTTCAAAACTTG+TGG | 0.506043 | 4.3:-87349228 | MS.gene034158:CDS |
| CCTGCATGGAACACACCTAC+AGG | 0.506080 | 4.3:-87359172 | MS.gene034158:CDS |
| CATATATAAGTAAAGGAAGA+TGG | 0.506462 | 4.3:+87357093 | None:intergenic |
| CCTGTAGGTGTGTTCCATGC+AGG | 0.506768 | 4.3:+87359172 | None:intergenic |
| AAGAAGCAATGCTTCATGCT+TGG | 0.508050 | 4.3:-87360335 | MS.gene034158:CDS |
| AAAAGCATAGCAAGACGCTT+AGG | 0.510186 | 4.3:+87362239 | None:intergenic |
| AAGAACTCTCGCATAGAGTC+GGG | 0.510675 | 4.3:-87356081 | MS.gene034158:CDS |
| TGGTCATTGATATCTGCTGT+TGG | 0.510790 | 4.3:-87349283 | MS.gene034158:CDS |
| GTCGGGCTATGTTGGACTAA+AGG | 0.512086 | 4.3:-87356064 | MS.gene034158:CDS |
| TCTAATGGAATGACCGAAGA+AGG | 0.512329 | 4.3:+87355741 | None:intergenic |
| AAAGATCGTATGTACTAAGA+AGG | 0.512574 | 4.3:+87359248 | None:intergenic |
| TCCTAGAATAGGTGGCAGAA+AGG | 0.513208 | 4.3:-87355622 | MS.gene034158:CDS |
| CACACAATCCTGGATGGACC+GGG | 0.515187 | 4.3:-87359111 | MS.gene034158:CDS |
| ATCTCTAAAACAGAGATATG+TGG | 0.515657 | 4.3:-87357161 | MS.gene034158:intron |
| CTTCTCACATATATAAGTAA+AGG | 0.516300 | 4.3:+87357086 | None:intergenic |
| TGCTTAAAGTTTGGGTACAA+GGG | 0.520166 | 4.3:-87357450 | MS.gene034158:CDS |
| TATTGCTGGGGCATCATTGG+TGG | 0.522656 | 4.3:-87348219 | MS.gene034158:CDS |
| CTTATGGTCTATCTAGCTCT+AGG | 0.522956 | 4.3:-87349711 | MS.gene034158:CDS |
| CCCATAGGCTCAATCTTGGT+TGG | 0.524865 | 4.3:-87348164 | MS.gene034158:CDS |
| GCTTTAAATCTGAAGAATCC+AGG | 0.527552 | 4.3:+87347815 | None:intergenic |
| AACTAACAGGTCCACTAAAG+AGG | 0.528572 | 4.3:-87360400 | MS.gene034158:CDS |
| TTGGTGGCAGTGCACTATAC+CGG | 0.528999 | 4.3:-87348203 | MS.gene034158:CDS |
| TCTCTAAAACAGAGATATGT+GGG | 0.531080 | 4.3:-87357160 | MS.gene034158:intron |
| TGCTTTGATTGGTAGAGCCA+TGG | 0.531831 | 4.3:-87348009 | MS.gene034158:CDS |
| TTCCTTGTCACAATCCTCAA+AGG | 0.532807 | 4.3:+87355690 | None:intergenic |
| AAACTTACCCCGGTCCATCC+AGG | 0.536972 | 4.3:+87359103 | None:intergenic |
| TGCCGGGAAGGTTGACTCGA+AGG | 0.537750 | 4.3:-87360427 | MS.gene034158:CDS |
| TGGTGCAAAATTATCTTCAA+AGG | 0.539551 | 4.3:-87347099 | MS.gene034158:CDS |
| GTCATTACTGCAACAGATGT+AGG | 0.541738 | 4.3:+87348819 | None:intergenic |
| AGGATGACTCTGTTGGATTG+TGG | 0.543614 | 4.3:+87346468 | None:intergenic |
| CTGCTAATTGCATATTCTCA+GGG | 0.545226 | 4.3:+87349057 | None:intergenic |
| ATATCAACATGCCGGATACC+AGG | 0.545711 | 4.3:+87346497 | None:intergenic |
| GAACTATTTCTTTCATTCTG+GGG | 0.545923 | 4.3:-87356342 | MS.gene034158:CDS |
| TCCTTGTCACAATCCTCAAA+GGG | 0.549191 | 4.3:+87355691 | None:intergenic |
| TTCTTACGAGAAATATGCAT+GGG | 0.549744 | 4.3:-87360310 | MS.gene034158:CDS |
| AAGTGCATGATGGCACTGCC+GGG | 0.556936 | 4.3:-87360443 | MS.gene034158:CDS |
| TTACAGTTATGGTTATTCCA+AGG | 0.558539 | 4.3:-87349317 | MS.gene034158:intron |
| CTCACTTCCCAGGTTAACAC+TGG | 0.559131 | 4.3:-87355834 | MS.gene034158:intron |
| AACTAGCGTGCTTTGCTCCA+GGG | 0.559285 | 4.3:-87356932 | MS.gene034158:CDS |
| CTATTTCTTTCATTCTGGGG+AGG | 0.561509 | 4.3:-87356339 | MS.gene034158:intron |
| AACTTTAGTCAGAGAATACC+AGG | 0.562310 | 4.3:-87362174 | MS.gene034158:intron |
| ACTTACGGATGAATAGCATC+TGG | 0.563756 | 4.3:+87349682 | None:intergenic |
| AAGGACTGGACGTGAGGACT+GGG | 0.564715 | 4.3:-87347080 | MS.gene034158:CDS |
| AGAATAGGTGGCAGAAAGGA+AGG | 0.566046 | 4.3:-87355618 | MS.gene034158:intron |
| AGACATACCAAGATTGGGGT+TGG | 0.568978 | 4.3:-87356125 | MS.gene034158:CDS |
| ACATGAGTGTGGGTACATCA+TGG | 0.569922 | 4.3:-87356209 | MS.gene034158:CDS |
| TCCCATTGATATCCAGAGAA+GGG | 0.570283 | 4.3:-87360367 | MS.gene034158:CDS |
| TGTTGCCGGTTAGGCGCCAA+AGG | 0.570883 | 4.3:+87356148 | None:intergenic |
| ATGGGGCCAAGATGAACTAC+AGG | 0.571368 | 4.3:-87360292 | MS.gene034158:intron |
| CAATATCTCTGGCTTTGTCA+AGG | 0.571901 | 4.3:+87359209 | None:intergenic |
| CCAACCAAGATTGAGCCTAT+GGG | 0.572736 | 4.3:+87348164 | None:intergenic |
| GAAGAACTCTCGCATAGAGT+CGG | 0.574661 | 4.3:-87356082 | MS.gene034158:CDS |
| AACTGGCCTTGCTATTGCTG+GGG | 0.575871 | 4.3:-87348231 | MS.gene034158:CDS |
| GCCGGGAAGGTTGACTCGAA+GGG | 0.576993 | 4.3:-87360426 | MS.gene034158:CDS |
| ATTTGACATAATGTTTGTCA+AGG | 0.579709 | 4.3:+87346671 | None:intergenic |
| TGTTGCGATTCAAGCTGTCA+AGG | 0.582621 | 4.3:-87348898 | MS.gene034158:CDS |
| TATCCGGCATGTTGATATTG+AGG | 0.589956 | 4.3:-87346492 | MS.gene034158:CDS |
| ATCCCATTGATATCCAGAGA+AGG | 0.596496 | 4.3:-87360368 | MS.gene034158:CDS |
| GCGATTCAAGCTGTCAAGGA+AGG | 0.597294 | 4.3:-87348894 | MS.gene034158:CDS |
| ATTGCTCTATCTCAAAGGAC+CGG | 0.598269 | 4.3:-87357883 | MS.gene034158:CDS |
| TCTTACCAAATTATGCAAGT+CGG | 0.598941 | 4.3:+87360838 | None:intergenic |
| ATCTTTCGAAAATGGCGAGA+GGG | 0.599552 | 4.3:-87362328 | None:intergenic |
| TTAAGAGACTATATTTGGCG+TGG | 0.601299 | 4.3:-87348849 | MS.gene034158:CDS |
| AATGCCATTTATGATCCCAT+AGG | 0.604064 | 4.3:-87348179 | MS.gene034158:CDS |
| AGTTCATTGCTCTATCTCAA+AGG | 0.605447 | 4.3:-87357888 | MS.gene034158:CDS |
| GGGCCTCAATATCAACATGC+CGG | 0.605779 | 4.3:+87346489 | None:intergenic |
| GCAGAAGTTTATGTCACTTG+CGG | 0.606147 | 4.3:-87356868 | MS.gene034158:CDS |
| ATGTTATAAGGAATTCCTGT+AGG | 0.608699 | 4.3:+87359157 | None:intergenic |
| ACTTATATATGTGAGAAGAG+TGG | 0.613725 | 4.3:-87357081 | MS.gene034158:CDS |
| GACGTGCACACAATCCTGGA+TGG | 0.617017 | 4.3:-87359117 | MS.gene034158:CDS |
| ATGTGGGAGAAATCAATGAA+AGG | 0.620443 | 4.3:-87357144 | MS.gene034158:CDS |
| TTGAGTTCAACGATAAACAC+AGG | 0.621321 | 4.3:-87351773 | MS.gene034158:intron |
| AACATTATCAACTTGTCACA+AGG | 0.621612 | 4.3:-87359139 | MS.gene034158:CDS |
| GCATGATGGCACTGCCGGGA+AGG | 0.623896 | 4.3:-87360439 | MS.gene034158:CDS |
| GAGTCAAATAAAGTGCATGA+TGG | 0.624057 | 4.3:-87360453 | MS.gene034158:CDS |
| ATGATGCCCCAGCAATAGCA+AGG | 0.624341 | 4.3:+87348225 | None:intergenic |
| AAGGAAGGTGCAAATGCAGA+GGG | 0.630922 | 4.3:-87348879 | MS.gene034158:CDS |
| AGACCCAAAGTATCAGCAGA+AGG | 0.635744 | 4.3:-87357860 | MS.gene034158:intron |
| GTTCTTACGAGAAATATGCA+TGG | 0.640411 | 4.3:-87360311 | MS.gene034158:CDS |
| ACCCTTTGAGGATTGTGACA+AGG | 0.641871 | 4.3:-87355692 | MS.gene034158:CDS |
| TAGGAAGTAATCCATCATCA+GGG | 0.641994 | 4.3:+87357700 | None:intergenic |
| CAAGGAAGGTGCAAATGCAG+AGG | 0.643495 | 4.3:-87348880 | MS.gene034158:CDS |
| GATGCAAAGTTTCTTTCTCG+CGG | 0.643973 | 4.3:-87355796 | MS.gene034158:CDS |
| GTGTTAATACCTATCACCCA+TGG | 0.646060 | 4.3:+87357623 | None:intergenic |
| CTCTACCAATCAAAGCATGT+CGG | 0.648283 | 4.3:+87348015 | None:intergenic |
| AACAAGACATACCAAGATTG+GGG | 0.651954 | 4.3:-87356129 | MS.gene034158:CDS |
| TCTTCAAAGGACTGGACGTG+AGG | 0.653994 | 4.3:-87347086 | MS.gene034158:CDS |
| TATATATGTGAGAAGAGTGG+AGG | 0.655638 | 4.3:-87357078 | MS.gene034158:CDS |
| TTGAATCGCAACAATAAGAG+AGG | 0.655648 | 4.3:+87348908 | None:intergenic |
| AGCTAACATAACATGACTAG+AGG | 0.655666 | 4.3:+87350065 | None:intergenic |
| GATCTTTCGAAAATGGCGAG+AGG | 0.677971 | 4.3:-87362329 | None:intergenic |
| ATCTGTTGCAGTAATGACAG+AGG | 0.680837 | 4.3:-87348814 | MS.gene034158:intron |
| GATTGTGACAAGGAACGAAG+CGG | 0.686601 | 4.3:-87355682 | MS.gene034158:CDS |
| TGCTAATTGCATATTCTCAG+GGG | 0.688985 | 4.3:+87349058 | None:intergenic |
| ACACAATCCTGGATGGACCG+GGG | 0.694750 | 4.3:-87359110 | MS.gene034158:intron |
| CCACAATCCAGAGTAGTAGG+TGG | 0.698751 | 4.3:-87359271 | MS.gene034158:intron |
| TCTTACGAGAAATATGCATG+GGG | 0.738365 | 4.3:-87360309 | MS.gene034158:CDS |
| GTACATCATGGAACATCCTG+AGG | 0.744218 | 4.3:-87356197 | MS.gene034158:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87346457 | 87362339 | 87346457 | ID=MS.gene034158 |
| chr4.3 | mRNA | 87346457 | 87362339 | 87346457 | ID=MS.gene034158.t1;Parent=MS.gene034158 |
| chr4.3 | exon | 87362175 | 87362339 | 87362175 | ID=MS.gene034158.t1.exon1;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87362175 | 87362339 | 87362175 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87360844 | 87360891 | 87360844 | ID=MS.gene034158.t1.exon2;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87360844 | 87360891 | 87360844 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87360293 | 87360481 | 87360293 | ID=MS.gene034158.t1.exon3;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87360293 | 87360481 | 87360293 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87359943 | 87360055 | 87359943 | ID=MS.gene034158.t1.exon4;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87359943 | 87360055 | 87359943 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87359420 | 87359485 | 87359420 | ID=MS.gene034158.t1.exon5;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87359420 | 87359485 | 87359420 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87359111 | 87359282 | 87359111 | ID=MS.gene034158.t1.exon6;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87359111 | 87359282 | 87359111 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87357861 | 87357950 | 87357861 | ID=MS.gene034158.t1.exon7;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87357861 | 87357950 | 87357861 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87357633 | 87357757 | 87357633 | ID=MS.gene034158.t1.exon8;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87357633 | 87357757 | 87357633 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87357421 | 87357486 | 87357421 | ID=MS.gene034158.t1.exon9;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87357421 | 87357486 | 87357421 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87357062 | 87357170 | 87357062 | ID=MS.gene034158.t1.exon10;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87357062 | 87357170 | 87357062 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87356863 | 87356961 | 87356863 | ID=MS.gene034158.t1.exon11;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87356863 | 87356961 | 87356863 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87356340 | 87356420 | 87356340 | ID=MS.gene034158.t1.exon12;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87356340 | 87356420 | 87356340 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87356062 | 87356232 | 87356062 | ID=MS.gene034158.t1.exon13;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87356062 | 87356232 | 87356062 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87355619 | 87355844 | 87355619 | ID=MS.gene034158.t1.exon14;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87355619 | 87355844 | 87355619 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87351774 | 87351831 | 87351774 | ID=MS.gene034158.t1.exon15;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87351774 | 87351831 | 87351774 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87350029 | 87350161 | 87350029 | ID=MS.gene034158.t1.exon16;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87350029 | 87350161 | 87350029 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87349688 | 87349743 | 87349688 | ID=MS.gene034158.t1.exon17;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87349688 | 87349743 | 87349688 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87349219 | 87349333 | 87349219 | ID=MS.gene034158.t1.exon18;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87349219 | 87349333 | 87349219 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87349024 | 87349081 | 87349024 | ID=MS.gene034158.t1.exon19;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87349024 | 87349081 | 87349024 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87348815 | 87348933 | 87348815 | ID=MS.gene034158.t1.exon20;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87348815 | 87348933 | 87348815 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87348148 | 87348267 | 87348148 | ID=MS.gene034158.t1.exon21;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87348148 | 87348267 | 87348148 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87347962 | 87348063 | 87347962 | ID=MS.gene034158.t1.exon22;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87347962 | 87348063 | 87347962 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87347807 | 87347879 | 87347807 | ID=MS.gene034158.t1.exon23;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87347807 | 87347879 | 87347807 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87347072 | 87347139 | 87347072 | ID=MS.gene034158.t1.exon24;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87347072 | 87347139 | 87347072 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87346667 | 87346727 | 87346667 | ID=MS.gene034158.t1.exon25;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87346667 | 87346727 | 87346667 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| chr4.3 | exon | 87346457 | 87346587 | 87346457 | ID=MS.gene034158.t1.exon26;Parent=MS.gene034158.t1 |
| chr4.3 | CDS | 87346457 | 87346587 | 87346457 | ID=cds.MS.gene034158.t1;Parent=MS.gene034158.t1 |
| Gene Sequence |
| Protein sequence |
