Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045141.t1 | XP_003601928.2 | 95 | 783 | 36 | 2 | 2 | 783 | 3 | 783 | 0.00E+00 | 1497.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045141.t1 | Q1HFZ0 | 35.8 | 769 | 412 | 19 | 43 | 803 | 44 | 738 | 2.4e-118 | 427.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045141.t1 | G7J386 | 95.0 | 783 | 36 | 2 | 2 | 783 | 3 | 783 | 0.0e+00 | 1497.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045141.t1 | MTR_3g086950 | 95.019 | 783 | 36 | 2 | 2 | 783 | 3 | 783 | 0.0 | 1522 |
MS.gene045141.t1 | MTR_8g089980 | 67.702 | 805 | 227 | 7 | 6 | 790 | 4 | 795 | 0.0 | 1088 |
MS.gene045141.t1 | MTR_3g460700 | 31.579 | 190 | 104 | 5 | 160 | 345 | 296 | 463 | 1.80e-19 | 94.0 |
MS.gene045141.t1 | MTR_5g096020 | 32.022 | 178 | 95 | 6 | 170 | 345 | 331 | 484 | 1.27e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045141.t1 | AT2G22400 | 56.770 | 805 | 308 | 12 | 10 | 788 | 11 | 801 | 0.0 | 895 |
MS.gene045141.t1 | AT4G40000 | 55.373 | 791 | 315 | 12 | 3 | 777 | 2 | 770 | 0.0 | 839 |
MS.gene045141.t1 | AT4G40000 | 53.448 | 580 | 236 | 9 | 210 | 777 | 1 | 558 | 0.0 | 591 |
MS.gene045141.t1 | AT5G55920 | 29.744 | 195 | 111 | 4 | 155 | 345 | 339 | 511 | 1.03e-17 | 88.2 |
MS.gene045141.t1 | AT4G26600 | 29.143 | 175 | 98 | 4 | 160 | 330 | 327 | 479 | 6.32e-14 | 76.3 |
MS.gene045141.t1 | AT3G13180 | 34.831 | 178 | 89 | 6 | 179 | 353 | 334 | 487 | 1.17e-13 | 75.1 |
MS.gene045141.t1 | AT4G26600 | 29.143 | 175 | 98 | 4 | 160 | 330 | 327 | 479 | 1.57e-13 | 74.7 |
MS.gene045141.t1 | AT4G26600 | 29.143 | 175 | 98 | 4 | 160 | 330 | 327 | 479 | 1.57e-13 | 74.7 |
MS.gene045141.t1 | AT4G26600 | 28.889 | 180 | 102 | 4 | 155 | 330 | 322 | 479 | 1.97e-13 | 74.3 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCGCTGTTTCTTGTTAAA+AGG | 0.182474 | 3.1:-69727129 | None:intergenic |
TAACATGGATTGTGATATAA+TGG | 0.226964 | 3.1:+69723933 | MS.gene045141:CDS |
GAATTTGTGGATGCCAAATT+TGG | 0.273704 | 3.1:+69727940 | MS.gene045141:CDS |
TATCACAATCCATGTTAAAA+TGG | 0.276206 | 3.1:-69723927 | None:intergenic |
TTAAAGCTAGAAAATGAAAT+TGG | 0.279052 | 3.1:+69723205 | MS.gene045141:CDS |
AAAGCCTTTCAAGCAGTTCT+TGG | 0.287509 | 3.1:-69728198 | None:intergenic |
AACTCAAGAACATTCTTAAC+TGG | 0.288606 | 3.1:-69727187 | None:intergenic |
GAATGCCAAGCAAGATTCTT+AGG | 0.288907 | 3.1:-69722395 | None:intergenic |
AACCTTGGGAACCTCTTTAC+AGG | 0.290364 | 3.1:-69726327 | None:intergenic |
TGACTTTGCACCTGCTCTTC+AGG | 0.292798 | 3.1:+69721834 | MS.gene045141:CDS |
AGGCTGTTGTGTGGTAGTTC+TGG | 0.306806 | 3.1:+69727987 | MS.gene045141:CDS |
GAAAGCACTTCCAGCAAAAC+AGG | 0.308049 | 3.1:+69720317 | MS.gene045141:CDS |
GTTAACGGACATTCTGAAAA+TGG | 0.321689 | 3.1:+69726428 | MS.gene045141:CDS |
GTTAAAAGGTGACCATCTAA+TGG | 0.327070 | 3.1:-69727115 | None:intergenic |
ACCGAATATCAGCATGAAAA+AGG | 0.327135 | 3.1:-69721798 | None:intergenic |
AGCAAAACAGGGAGAATGTT+TGG | 0.344616 | 3.1:+69720329 | MS.gene045141:CDS |
TTGGAAGAAGGAACTGATTC+TGG | 0.352237 | 3.1:-69720364 | None:intergenic |
CAGCATTTAGAATCAATTCC+AGG | 0.360609 | 3.1:+69720506 | MS.gene045141:CDS |
TCCGCAAGGCACCTGATCTC+TGG | 0.362988 | 3.1:+69724031 | MS.gene045141:CDS |
CCATGTTAAAATGGCATCTT+GGG | 0.367879 | 3.1:-69723918 | None:intergenic |
ATCAAGTAGTTTCCACATCT+TGG | 0.371965 | 3.1:-69728321 | None:intergenic |
AGGAACACAGGGACAGGAAA+TGG | 0.375472 | 3.1:+69724175 | MS.gene045141:intron |
GGCCTATCTTTACTTAAAGT+TGG | 0.379631 | 3.1:+69724688 | MS.gene045141:intron |
TCCATGTTAAAATGGCATCT+TGG | 0.381795 | 3.1:-69723919 | None:intergenic |
TCCGCCATTGGGAAACATGC+TGG | 0.382248 | 3.1:-69726369 | None:intergenic |
TATGTAAAATCTCAAGCAAT+TGG | 0.384964 | 3.1:-69723617 | None:intergenic |
GGCTGTTGTGTGGTAGTTCT+GGG | 0.387608 | 3.1:+69727988 | MS.gene045141:CDS |
CATCGTTTCACTTGAAGAAT+GGG | 0.388562 | 3.1:+69720447 | MS.gene045141:CDS |
CTTGTAATAGTGATCGAAAT+CGG | 0.388868 | 3.1:-69720416 | None:intergenic |
AATGAGCATTTCCCATTAGA+TGG | 0.391149 | 3.1:+69727103 | MS.gene045141:CDS |
GAATCTCCTTCATCTATAAC+AGG | 0.393172 | 3.1:-69726923 | None:intergenic |
TTGGGAAGTGCTGAGCTTCA+TGG | 0.393243 | 3.1:-69723900 | None:intergenic |
TGCTGATATTCGGTCCCAAC+TGG | 0.404395 | 3.1:+69721807 | MS.gene045141:CDS |
CACCAACTTTAAGTAAAGAT+AGG | 0.406278 | 3.1:-69724690 | None:intergenic |
CCACACAACAGCCTGGCATT+AGG | 0.411330 | 3.1:-69727978 | None:intergenic |
AACAGTAATTGCGATGTTAA+CGG | 0.412089 | 3.1:+69726413 | MS.gene045141:CDS |
GCATGGCGACTAAAATTTGT+AGG | 0.418572 | 3.1:-69724207 | None:intergenic |
ATTCTAAATGCTGCAGGTAA+TGG | 0.421032 | 3.1:-69720496 | None:intergenic |
TCATCTTTGAAGAAGACAAC+AGG | 0.421605 | 3.1:-69727043 | None:intergenic |
AACATGGATTGTGATATAAT+GGG | 0.421946 | 3.1:+69723934 | MS.gene045141:CDS |
TTTAGTCCTGTTATAGATGA+AGG | 0.425962 | 3.1:+69726917 | MS.gene045141:CDS |
AATTTAAAATCTGAAGTGTT+GGG | 0.426283 | 3.1:-69726896 | None:intergenic |
ACATCGTTTCACTTGAAGAA+TGG | 0.431177 | 3.1:+69720446 | MS.gene045141:CDS |
TTGAACTTGTTGATGTCTCC+AGG | 0.431559 | 3.1:+69725566 | MS.gene045141:CDS |
ATCTTGATAGCTTCCGCCAT+TGG | 0.435408 | 3.1:-69726381 | None:intergenic |
TTAAAAGGTGACCATCTAAT+GGG | 0.439999 | 3.1:-69727114 | None:intergenic |
GGAAGAATCAATCACTTAAG+AGG | 0.440130 | 3.1:+69722441 | MS.gene045141:CDS |
ACCTGGACGACGAATAAGTT+GGG | 0.440323 | 3.1:-69725596 | None:intergenic |
AGACTGCTTGTTCTCATGAA+TGG | 0.440898 | 3.1:-69728257 | None:intergenic |
GGAAGTGCTTTCGCTGAGTT+CGG | 0.441848 | 3.1:-69720306 | None:intergenic |
GTGATGTGAGGGAGGATAAG+AGG | 0.447633 | 3.1:-69727847 | None:intergenic |
AAATTTAAAATCTGAAGTGT+TGG | 0.447779 | 3.1:-69726897 | None:intergenic |
ACTTAAAGTTGGTGGAAGAA+TGG | 0.448245 | 3.1:+69724699 | MS.gene045141:CDS |
TGTTCAGTGTGTGCTGCACC+AGG | 0.449685 | 3.1:+69723582 | MS.gene045141:intron |
TCTTGATAGCTTCCGCCATT+GGG | 0.453600 | 3.1:-69726380 | None:intergenic |
TAACGTGGAAGATGTTGAAC+AGG | 0.454000 | 3.1:+69728282 | MS.gene045141:CDS |
TCTTCGTGTGTACTTTCTGA+TGG | 0.455473 | 3.1:-69726836 | None:intergenic |
TTGCAATACGGCTATAAAGA+AGG | 0.456126 | 3.1:-69726558 | None:intergenic |
AGCAATTATTAAGAGCATAA+AGG | 0.456581 | 3.1:+69727066 | MS.gene045141:CDS |
AATAAGTTGGGGAAGCTCCC+TGG | 0.456811 | 3.1:-69725584 | None:intergenic |
GATTACATCTTTGTACATCT+AGG | 0.458485 | 3.1:-69723825 | None:intergenic |
AAGAACATTCTTAACTGGCT+TGG | 0.458711 | 3.1:-69727182 | None:intergenic |
AGCTTCAAATACAAGGCAAA+TGG | 0.462340 | 3.1:+69727008 | MS.gene045141:CDS |
TACCATCTCCTCCAGAGATC+AGG | 0.462531 | 3.1:-69724042 | None:intergenic |
AGATTATTTGTGTTGGAAGA+AGG | 0.462587 | 3.1:-69720376 | None:intergenic |
AGAAGATGCTTGAAATCTAT+AGG | 0.465394 | 3.1:-69727892 | None:intergenic |
TTCCTGTTCTGCAGCAATTG+AGG | 0.465537 | 3.1:+69726730 | MS.gene045141:intron |
CTTGTGCATCCTCATTTCCC+TGG | 0.466121 | 3.1:-69726799 | None:intergenic |
ATGTGACAAGGGCAAGTACT+TGG | 0.469184 | 3.1:+69726301 | MS.gene045141:CDS |
ATCGAACAGATTATTTGTGT+TGG | 0.473789 | 3.1:-69720383 | None:intergenic |
TTCAATAGGATTCATTGAGC+AGG | 0.474325 | 3.1:-69724731 | None:intergenic |
GAAATGGGGAGAGGCAAAGG+AGG | 0.475970 | 3.1:+69720277 | MS.gene045141:intron |
ACTACGTTTCTAAGAACCTT+GGG | 0.477206 | 3.1:-69726341 | None:intergenic |
CAAGTACAATATGATTTGAA+TGG | 0.477592 | 3.1:-69723441 | None:intergenic |
AGTGAAATGGGGAGAGGCAA+AGG | 0.480123 | 3.1:+69720274 | MS.gene045141:intron |
ATGCTGCAGGTAATGGAGTT+CGG | 0.482903 | 3.1:-69720489 | None:intergenic |
CCCCAACTTATTCGTCGTCC+AGG | 0.486531 | 3.1:+69725595 | MS.gene045141:CDS |
GTGAGGCTCCTCAGCTTCCT+CGG | 0.487239 | 3.1:-69726945 | None:intergenic |
GTACTTGGTTTCCTGTAAAG+AGG | 0.488357 | 3.1:+69726316 | MS.gene045141:CDS |
CTTACCATGGCCTGAAGAGC+AGG | 0.489274 | 3.1:-69721844 | None:intergenic |
AGAAGCGCTTAGGATCTGTT+TGG | 0.489878 | 3.1:-69727869 | None:intergenic |
GCAATCCTTCAGAAGTGATT+CGG | 0.490267 | 3.1:-69727825 | None:intergenic |
CTTGAGTTGAACTTCTCAGT+TGG | 0.491695 | 3.1:+69727202 | MS.gene045141:CDS |
CCGCCATTGGGAAACATGCT+GGG | 0.493220 | 3.1:-69726368 | None:intergenic |
GGTTGATGAAGTGGATGAGG+AGG | 0.497389 | 3.1:+69722346 | MS.gene045141:intron |
ATCAATAAACCAGGGAAATG+AGG | 0.497760 | 3.1:+69726790 | MS.gene045141:CDS |
GGATGCCAAATTTGGTGAAA+AGG | 0.499650 | 3.1:+69727948 | MS.gene045141:CDS |
AGTTGGGAATTATACTGATC+TGG | 0.501666 | 3.1:-69723958 | None:intergenic |
GGAACACAGGGACAGGAAAT+GGG | 0.502040 | 3.1:+69724176 | MS.gene045141:intron |
GATTCTTCCTAAGCTGCATA+CGG | 0.502414 | 3.1:-69722427 | None:intergenic |
TTTAGACAGAGTCACTGAAA+AGG | 0.504211 | 3.1:+69728228 | MS.gene045141:CDS |
AATGCCAAGAACTGCTTGAA+AGG | 0.506490 | 3.1:+69728194 | MS.gene045141:CDS |
ACCTTCCATGTCTTTAGACC+TGG | 0.507914 | 3.1:-69725613 | None:intergenic |
TTAGACAGAGTCACTGAAAA+GGG | 0.507959 | 3.1:+69728229 | MS.gene045141:CDS |
AAATGGGGAGAGGCAAAGGA+GGG | 0.510364 | 3.1:+69720278 | MS.gene045141:intron |
TGGACATATACCATTCCATC+AGG | 0.510715 | 3.1:-69723663 | None:intergenic |
ATAGGTTGATGAAGTGGATG+AGG | 0.514022 | 3.1:+69722343 | MS.gene045141:intron |
GCTTTCCGAATCACTTCTGA+AGG | 0.515333 | 3.1:+69727820 | MS.gene045141:CDS |
GAATTGATTCTAAATGCTGC+AGG | 0.515849 | 3.1:-69720502 | None:intergenic |
GCCATTGCATGCTGGAAAGG+TGG | 0.515951 | 3.1:+69728139 | MS.gene045141:CDS |
CACCTGATCTCTGGAGGAGA+TGG | 0.517049 | 3.1:+69724040 | MS.gene045141:CDS |
AATCTATAGGAGAAGCGCTT+AGG | 0.518818 | 3.1:-69727879 | None:intergenic |
CCATTGCATGCTGGAAAGGT+GGG | 0.519126 | 3.1:+69728140 | MS.gene045141:CDS |
TGCACCTGCTCTTCAGGCCA+TGG | 0.521325 | 3.1:+69721840 | MS.gene045141:CDS |
TTGTAATAGTGATCGAAATC+GGG | 0.521548 | 3.1:-69720415 | None:intergenic |
AACTACGTTTCTAAGAACCT+TGG | 0.522454 | 3.1:-69726342 | None:intergenic |
TCAGTAAACTCATGCATCAC+AGG | 0.523914 | 3.1:-69726470 | None:intergenic |
GACCTGGACGACGAATAAGT+TGG | 0.525728 | 3.1:-69725597 | None:intergenic |
ATATGCAGGAACACAGGGAC+AGG | 0.528355 | 3.1:+69724169 | MS.gene045141:intron |
CATCAATAGCCATTGCATGC+TGG | 0.530068 | 3.1:+69728131 | MS.gene045141:CDS |
AATTGGAAATATTACGAGAC+AGG | 0.532644 | 3.1:+69723222 | MS.gene045141:CDS |
AAATACAAGGCAAATGGAGA+GGG | 0.542089 | 3.1:+69727014 | MS.gene045141:CDS |
CAACTGAAAATAACTTCTGT+TGG | 0.542784 | 3.1:+69727229 | MS.gene045141:CDS |
CTGCCTCATGATCAGAACTC+TGG | 0.543802 | 3.1:+69726533 | MS.gene045141:CDS |
AGGATCACTGCCTGATGGAA+TGG | 0.544206 | 3.1:+69723653 | MS.gene045141:CDS |
CATATAATAAATCACCTGGC+AGG | 0.548492 | 3.1:-69726592 | None:intergenic |
AAAAGAAAGCTTCAAATACA+AGG | 0.548911 | 3.1:+69727001 | MS.gene045141:CDS |
TTACATAGATCAGCTAAAGC+AGG | 0.553146 | 3.1:+69723633 | MS.gene045141:CDS |
ATAGCCATTGCATGCTGGAA+AGG | 0.554949 | 3.1:+69728136 | MS.gene045141:CDS |
CCCACCTTTCCAGCATGCAA+TGG | 0.555152 | 3.1:-69728140 | None:intergenic |
AACACGATCAAATAGCAGTT+GGG | 0.555354 | 3.1:-69723974 | None:intergenic |
GAACACGATCAAATAGCAGT+TGG | 0.557171 | 3.1:-69723975 | None:intergenic |
CTATCTTTACTTAAAGTTGG+TGG | 0.560719 | 3.1:+69724691 | MS.gene045141:CDS |
AGGATCTGTTTGGTGATGTG+AGG | 0.561192 | 3.1:-69727859 | None:intergenic |
TGGGGCAAGTTTGACCGTGA+TGG | 0.562576 | 3.1:+69728159 | MS.gene045141:CDS |
GATGTTGAACAGGAGTCAAA+CGG | 0.563250 | 3.1:+69728292 | MS.gene045141:CDS |
AAGGCAACAAACCTAATGCC+AGG | 0.564421 | 3.1:+69727967 | MS.gene045141:CDS |
CCCAGCATGTTTCCCAATGG+CGG | 0.568848 | 3.1:+69726368 | MS.gene045141:CDS |
TTCCTGTAAAGAGGTTCCCA+AGG | 0.568849 | 3.1:+69726325 | MS.gene045141:CDS |
AGAACTACCACACAACAGCC+TGG | 0.570597 | 3.1:-69727985 | None:intergenic |
TTGCGTATATGCAGGAACAC+AGG | 0.572848 | 3.1:+69724163 | MS.gene045141:intron |
CACATGGAGGGCCTCTGCGG+CGG | 0.572910 | 3.1:-69728101 | None:intergenic |
ATTCTTCCTAAGCTGCATAC+GGG | 0.575885 | 3.1:-69722426 | None:intergenic |
TTCTTAGGATACCATGGCAA+AGG | 0.576332 | 3.1:-69722380 | None:intergenic |
CTCCCCAGCATGTTTCCCAA+TGG | 0.578045 | 3.1:+69726365 | MS.gene045141:CDS |
GGATCTGTTTGGTGATGTGA+GGG | 0.580807 | 3.1:-69727858 | None:intergenic |
CTATCAAAACATACCTCGCA+TGG | 0.582545 | 3.1:-69724224 | None:intergenic |
TGCGTATATGCAGGAACACA+GGG | 0.584662 | 3.1:+69724164 | MS.gene045141:intron |
GGTATCCTAAGAATCTTGCT+TGG | 0.585845 | 3.1:+69722390 | MS.gene045141:CDS |
AGAGATCAGGTGCCTTGCGG+AGG | 0.587876 | 3.1:-69724029 | None:intergenic |
GTCGTCCAGGTCTAAAGACA+TGG | 0.591000 | 3.1:+69725608 | MS.gene045141:CDS |
AAACGGTAACAGCCAAGATG+TGG | 0.591175 | 3.1:+69728309 | MS.gene045141:CDS |
AAAGCAGGATCACTGCCTGA+TGG | 0.592345 | 3.1:+69723648 | MS.gene045141:CDS |
ACCGCATGCATCGATCGAGC+GGG | 0.593868 | 3.1:-69726508 | None:intergenic |
TGAACTTGTTGATGTCTCCA+GGG | 0.594353 | 3.1:+69725567 | MS.gene045141:CDS |
ACATGTAGAATCAATAAACC+AGG | 0.600186 | 3.1:+69726781 | MS.gene045141:CDS |
AACCGCATGCATCGATCGAG+CGG | 0.604799 | 3.1:-69726509 | None:intergenic |
TTGTATATAGGTTGATGAAG+TGG | 0.605648 | 3.1:+69722337 | MS.gene045141:intron |
CATTGCATGCTGGAAAGGTG+GGG | 0.609232 | 3.1:+69728141 | MS.gene045141:CDS |
ATCCACATGGAGGGCCTCTG+CGG | 0.609685 | 3.1:-69728104 | None:intergenic |
TGATGATTCATCCACATGGA+GGG | 0.609755 | 3.1:-69728113 | None:intergenic |
CGCCGCAGAGGCCCTCCATG+TGG | 0.611335 | 3.1:+69728102 | MS.gene045141:CDS |
AGGCAACAGAACCGCCGCAG+AGG | 0.615798 | 3.1:+69728090 | MS.gene045141:intron |
AGGAGATTCCGAGGAAGCTG+AGG | 0.618099 | 3.1:+69726937 | MS.gene045141:CDS |
GAGATCAGGTGCCTTGCGGA+GGG | 0.618345 | 3.1:-69724028 | None:intergenic |
TCTGTTTGGTGATGTGAGGG+AGG | 0.619242 | 3.1:-69727855 | None:intergenic |
CGCCATTGGGAAACATGCTG+GGG | 0.619327 | 3.1:-69726367 | None:intergenic |
GCAAGATTCTTAGGATACCA+TGG | 0.619719 | 3.1:-69722386 | None:intergenic |
GAAGGAACTGATTCTGGACG+CGG | 0.619939 | 3.1:-69720358 | None:intergenic |
GCTCCAGAGTTCTGATCATG+AGG | 0.620441 | 3.1:-69726536 | None:intergenic |
AGGGTACCATCTCCACTACA+TGG | 0.622208 | 3.1:-69724009 | None:intergenic |
CTATTGATGATTCATCCACA+TGG | 0.623804 | 3.1:-69728117 | None:intergenic |
TATAGATGAAGGAGATTCCG+AGG | 0.624068 | 3.1:+69726928 | MS.gene045141:CDS |
TGTGTGGTAGTTCTGGGTGA+AGG | 0.625545 | 3.1:+69727994 | MS.gene045141:CDS |
CTGTGTGACGTACCATGTAG+TGG | 0.630638 | 3.1:+69723997 | MS.gene045141:CDS |
TGGAGATGGTACCCTCCGCA+AGG | 0.630950 | 3.1:+69724017 | MS.gene045141:CDS |
CAAATACAAGGCAAATGGAG+AGG | 0.631985 | 3.1:+69727013 | MS.gene045141:CDS |
TCCAGAGATCAGGTGCCTTG+CGG | 0.632685 | 3.1:-69724032 | None:intergenic |
AAGCTATTAGACCTTTGCCA+TGG | 0.636108 | 3.1:+69722369 | MS.gene045141:CDS |
GAAAGACAAAAGTCACGTGA+AGG | 0.638729 | 3.1:+69727781 | MS.gene045141:CDS |
CTGCTTGTTCTCATGAATGG+AGG | 0.638783 | 3.1:-69728254 | None:intergenic |
GAAGTGCTGAGCTTCATGGT+TGG | 0.638823 | 3.1:-69723896 | None:intergenic |
GAGACAGGAAGCTGTCAGCA+TGG | 0.639778 | 3.1:+69723237 | MS.gene045141:CDS |
GCAAGGCACCTGATCTCTGG+AGG | 0.644114 | 3.1:+69724034 | MS.gene045141:CDS |
TTCTATTGAAGTAACCATCA+CGG | 0.647122 | 3.1:-69728173 | None:intergenic |
TCCAGGTCTAAAGACATGGA+AGG | 0.654390 | 3.1:+69725612 | MS.gene045141:CDS |
AAAGCACTTCCAGCAAAACA+GGG | 0.662250 | 3.1:+69720318 | MS.gene045141:CDS |
CATCTTTGAAGAAGACAACA+GGG | 0.670336 | 3.1:-69727042 | None:intergenic |
CCTGGACGACGAATAAGTTG+GGG | 0.671958 | 3.1:-69725595 | None:intergenic |
GACGTACCATGTAGTGGAGA+TGG | 0.673508 | 3.1:+69724003 | MS.gene045141:CDS |
GAACAAGCAGTCTAATAACG+TGG | 0.677216 | 3.1:+69728267 | MS.gene045141:CDS |
AATACAAGGCAAATGGAGAG+GGG | 0.677426 | 3.1:+69727015 | MS.gene045141:CDS |
CATGTAGAATCAATAAACCA+GGG | 0.680160 | 3.1:+69726782 | MS.gene045141:CDS |
TCCCGCTCGATCGATGCATG+CGG | 0.680659 | 3.1:+69726507 | MS.gene045141:CDS |
TGGACATCTAAGAACAGAGG+AGG | 0.684034 | 3.1:-69723421 | None:intergenic |
TTGATGATTCATCCACATGG+AGG | 0.690153 | 3.1:-69728114 | None:intergenic |
GAATGGACATCTAAGAACAG+AGG | 0.695804 | 3.1:-69723424 | None:intergenic |
GTGATGCAGGTATGTGACAA+GGG | 0.707417 | 3.1:+69726290 | MS.gene045141:intron |
GGTGATGCAGGTATGTGACA+AGG | 0.707639 | 3.1:+69726289 | MS.gene045141:intron |
AAATGAAGCTGTCATTGCTG+AGG | 0.710161 | 3.1:+69724753 | MS.gene045141:CDS |
CCTAATGCCAGGCTGTTGTG+TGG | 0.732060 | 3.1:+69727978 | MS.gene045141:CDS |
TGTGATGCATGAGTTTACTG+AGG | 0.762426 | 3.1:+69726472 | MS.gene045141:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 69720201 | 69728342 | 69720201 | ID=MS.gene045141 |
chr3.1 | mRNA | 69720201 | 69728342 | 69720201 | ID=MS.gene045141.t1;Parent=MS.gene045141 |
chr3.1 | exon | 69720201 | 69720205 | 69720201 | ID=MS.gene045141.t1.exon1;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69720201 | 69720205 | 69720201 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69720288 | 69720527 | 69720288 | ID=MS.gene045141.t1.exon2;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69720288 | 69720527 | 69720288 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69721795 | 69721861 | 69721795 | ID=MS.gene045141.t1.exon3;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69721795 | 69721861 | 69721795 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69722347 | 69722462 | 69722347 | ID=MS.gene045141.t1.exon4;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69722347 | 69722462 | 69722347 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69723192 | 69723258 | 69723192 | ID=MS.gene045141.t1.exon5;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69723192 | 69723258 | 69723192 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69723418 | 69723466 | 69723418 | ID=MS.gene045141.t1.exon6;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69723418 | 69723466 | 69723418 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69723589 | 69723674 | 69723589 | ID=MS.gene045141.t1.exon7;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69723589 | 69723674 | 69723589 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69723811 | 69724061 | 69723811 | ID=MS.gene045141.t1.exon8;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69723811 | 69724061 | 69723811 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69724177 | 69724232 | 69724177 | ID=MS.gene045141.t1.exon9;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69724177 | 69724232 | 69724177 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69724689 | 69724774 | 69724689 | ID=MS.gene045141.t1.exon10;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69724689 | 69724774 | 69724689 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69725541 | 69725633 | 69725541 | ID=MS.gene045141.t1.exon11;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69725541 | 69725633 | 69725541 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69726299 | 69726599 | 69726299 | ID=MS.gene045141.t1.exon12;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69726299 | 69726599 | 69726299 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69726744 | 69727264 | 69726744 | ID=MS.gene045141.t1.exon13;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69726744 | 69727264 | 69726744 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69727781 | 69728015 | 69727781 | ID=MS.gene045141.t1.exon14;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69727781 | 69728015 | 69727781 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
chr3.1 | exon | 69728092 | 69728342 | 69728092 | ID=MS.gene045141.t1.exon15;Parent=MS.gene045141.t1 |
chr3.1 | CDS | 69728092 | 69728342 | 69728092 | ID=cds.MS.gene045141.t1;Parent=MS.gene045141.t1 |
Gene Sequence |
Protein sequence |