Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28046.t1 | KEH20796.1 | 96.3 | 818 | 27 | 2 | 1 | 815 | 1 | 818 | 0.00E+00 | 1565.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28046.t1 | Q5ZLV4 | 37.3 | 718 | 368 | 18 | 49 | 759 | 44 | 686 | 5.9e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28046.t1 | A0A072TUE4 | 96.3 | 818 | 27 | 2 | 1 | 815 | 1 | 818 | 0.0e+00 | 1565.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28046.t1 | MTR_8g089980 | 96.333 | 818 | 27 | 2 | 1 | 815 | 1 | 818 | 0.0 | 1633 |
| MS.gene28046.t1 | MTR_3g086950 | 66.581 | 781 | 225 | 9 | 1 | 765 | 1 | 761 | 0.0 | 1051 |
| MS.gene28046.t1 | MTR_3g460700 | 30.876 | 217 | 118 | 6 | 166 | 378 | 296 | 484 | 4.68e-18 | 89.4 |
| MS.gene28046.t1 | MTR_5g096020 | 33.728 | 169 | 86 | 7 | 185 | 351 | 340 | 484 | 1.12e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28046.t1 | AT2G22400 | 60.422 | 806 | 277 | 13 | 8 | 786 | 11 | 801 | 0.0 | 973 |
| MS.gene28046.t1 | AT4G40000 | 57.288 | 789 | 293 | 10 | 1 | 771 | 1 | 763 | 0.0 | 874 |
| MS.gene28046.t1 | AT4G40000 | 55.401 | 574 | 215 | 9 | 216 | 771 | 1 | 551 | 0.0 | 608 |
| MS.gene28046.t1 | AT4G26600 | 28.620 | 297 | 163 | 11 | 166 | 446 | 327 | 590 | 2.13e-16 | 84.0 |
| MS.gene28046.t1 | AT4G26600 | 28.620 | 297 | 163 | 11 | 166 | 446 | 327 | 590 | 2.21e-16 | 84.0 |
| MS.gene28046.t1 | AT5G55920 | 30.244 | 205 | 111 | 6 | 161 | 359 | 339 | 517 | 3.09e-16 | 83.6 |
| MS.gene28046.t1 | AT4G26600 | 29.954 | 217 | 120 | 5 | 166 | 378 | 327 | 515 | 3.72e-16 | 83.2 |
| MS.gene28046.t1 | AT4G26600 | 32.323 | 198 | 106 | 5 | 166 | 359 | 327 | 500 | 4.22e-16 | 82.8 |
| MS.gene28046.t1 | AT3G13180 | 31.361 | 169 | 90 | 4 | 185 | 351 | 334 | 478 | 4.74e-13 | 73.2 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCAGGATGCCGTTTAAA+AGG | 0.190650 | 4.4:-11001320 | MS.gene28046:CDS |
| TAAAAGAAAGCTACAATATC+AGG | 0.199583 | 4.4:-10998334 | MS.gene28046:CDS |
| TTTACTTTCTGCAGGAATTC+AGG | 0.226926 | 4.4:-11001111 | MS.gene28046:intron |
| TTCCGTTCTTGCAGCTATTC+TGG | 0.233522 | 4.4:-10998577 | MS.gene28046:intron |
| GCTCTTCACCATGTGCTTTC+CGG | 0.245863 | 4.4:-10997356 | MS.gene28046:CDS |
| CTTCATGATTAGTAACAATT+AGG | 0.246866 | 4.4:+11001351 | None:intergenic |
| TGGTTGTTGCGTGGTTATTA+TGG | 0.247821 | 4.4:-10997175 | MS.gene28046:CDS |
| TTAAAGCTAGAAAATGAAAT+TGG | 0.254499 | 4.4:-11002239 | MS.gene28046:CDS |
| GGCACAGAAAATGGCTCTTC+TGG | 0.261873 | 4.4:-10996914 | MS.gene28046:CDS |
| CTTTCCAGTATGTTTCCTTC+TGG | 0.278031 | 4.4:-10998973 | MS.gene28046:CDS |
| TCCTTCTGGCAAATGCTATC+AGG | 0.284071 | 4.4:-10998959 | MS.gene28046:CDS |
| CATCATTTAGAATCAATTCT+AGG | 0.285604 | 4.4:-11003730 | MS.gene28046:intron |
| AGCTACAATATCAGGGAAAA+TGG | 0.291106 | 4.4:-10998326 | MS.gene28046:CDS |
| TTCCGTTCTTCACGTGTTAG+AGG | 0.291267 | 4.4:+10998414 | None:intergenic |
| AAAGTCTTGCAAGCAATTCT+TGG | 0.304314 | 4.4:+10996948 | None:intergenic |
| ACGGAACTTGGGAACATCTT+TGG | 0.305209 | 4.4:+10999008 | None:intergenic |
| ATAGGTTCCTCCCCTATTCT+TGG | 0.312286 | 4.4:-11001821 | MS.gene28046:intron |
| TGGTTATGTATGGAAGAATA+AGG | 0.325256 | 4.4:+10997313 | None:intergenic |
| TGTATCCCATACAGATGATT+TGG | 0.333655 | 4.4:-10998445 | MS.gene28046:CDS |
| ATACGTCTAGGCACAGAAAA+TGG | 0.356138 | 4.4:-10996923 | MS.gene28046:CDS |
| TACCATTTCCGCCACATATC+AGG | 0.360042 | 4.4:+11001194 | None:intergenic |
| GGTTGTTGCGTGGTTATTAT+GGG | 0.360528 | 4.4:-10997174 | MS.gene28046:CDS |
| GTCAAAACAGAGAAAACGTT+TGG | 0.362743 | 4.4:-11003931 | MS.gene28046:CDS |
| CGGCCTTTGCCCTGGTATCC+CGG | 0.363804 | 4.4:-11003439 | MS.gene28046:CDS |
| CTGAATGCACATCCAAGAAT+AGG | 0.383509 | 4.4:+11001809 | None:intergenic |
| AATCACACTTCTACGGAACT+TGG | 0.388539 | 4.4:+10998996 | None:intergenic |
| TATCTTCCAAATCATCTGTA+TGG | 0.390960 | 4.4:+10998439 | None:intergenic |
| TGAATGCACATCCAAGAATA+GGG | 0.393782 | 4.4:+11001810 | None:intergenic |
| GCTTACTGTCAAGTACAAAA+TGG | 0.398024 | 4.4:+11001785 | None:intergenic |
| AACACAGCAGAGAAGGTTCC+AGG | 0.405306 | 4.4:-10998357 | MS.gene28046:CDS |
| AGCAAAGTTCCCGGGATACC+AGG | 0.408224 | 4.4:+11003429 | None:intergenic |
| TTACTTTCTGCAGGAATTCA+GGG | 0.413804 | 4.4:-11001110 | MS.gene28046:intron |
| GTCGGCCAGGTCTCAAGAAA+TGG | 0.414879 | 4.4:-10999710 | MS.gene28046:CDS |
| CACCTGATATGTGGCGGAAA+TGG | 0.415761 | 4.4:-11001196 | MS.gene28046:intron |
| AAGACAGGAAGCTGTTAGTA+TGG | 0.418992 | 4.4:-11002207 | MS.gene28046:intron |
| TATTGTTGCGTTGAACTTCT+CGG | 0.421626 | 4.4:-10998136 | MS.gene28046:CDS |
| CAATCGGATGCTGGAGGGGT+AGG | 0.425361 | 4.4:-10997006 | MS.gene28046:CDS |
| TTCACCTCCAACATAGTTAG+AGG | 0.427601 | 4.4:+10996877 | None:intergenic |
| ATAATTTGCTTGGTTATGTA+TGG | 0.434010 | 4.4:+10997303 | None:intergenic |
| GCATAGCAATTAAAACTTGT+AGG | 0.441578 | 4.4:+11001067 | None:intergenic |
| GGTTATGTATGGAAGAATAA+GGG | 0.441749 | 4.4:+10997314 | None:intergenic |
| TGAATGCCAAGCAAAGTTCC+CGG | 0.442297 | 4.4:+11003420 | None:intergenic |
| ATTCTCAAACTACTACTCAT+TGG | 0.443034 | 4.4:-11003865 | MS.gene28046:CDS |
| GGTGTATAGTCTCGAGCAAT+TGG | 0.445281 | 4.4:+11001625 | None:intergenic |
| TTGTTGACTCGTCAACTTTG+AGG | 0.446066 | 4.4:+10997032 | None:intergenic |
| TCGGAGGATAAGGAAGGGTC+TGG | 0.446587 | 4.4:+11003890 | None:intergenic |
| AATTGTTGATCCACAAGAAT+GGG | 0.449501 | 4.4:-11003789 | MS.gene28046:CDS |
| GGCAAATGCTATCAGGATCT+TGG | 0.450132 | 4.4:-10998952 | MS.gene28046:CDS |
| GGTATCCCGGGAACTTTGCT+TGG | 0.450478 | 4.4:-11003426 | MS.gene28046:CDS |
| TGTTGACTCGTCAACTTTGA+GGG | 0.452988 | 4.4:+10997033 | None:intergenic |
| AAAAGGGAATTATGAAAGAA+TGG | 0.453153 | 4.4:-11001303 | MS.gene28046:CDS |
| TGATGATATTCGTTCCCAAT+TGG | 0.458564 | 4.4:-11003606 | MS.gene28046:CDS |
| GATAAGGAAGGGTCTGGATC+TGG | 0.459026 | 4.4:+11003896 | None:intergenic |
| GCACAGAAAATGGCTCTTCT+GGG | 0.461885 | 4.4:-10996913 | MS.gene28046:CDS |
| TCCTCAAGACTCTGTTTGCT+AGG | 0.463373 | 4.4:+10998549 | None:intergenic |
| TGCGTGGTTATTATGGGTAA+AGG | 0.468510 | 4.4:-10997168 | MS.gene28046:intron |
| GCAATCCTTCGGATGATATC+CGG | 0.470647 | 4.4:+10997337 | None:intergenic |
| GATGCTGGAGGGGTAGGGCG+AGG | 0.471870 | 4.4:-10997000 | MS.gene28046:CDS |
| AGATGCCTGTATAATTTGCT+TGG | 0.476950 | 4.4:+10997293 | None:intergenic |
| TTCCTTTGATTCTTATTACA+AGG | 0.477035 | 4.4:-11003819 | MS.gene28046:CDS |
| AGGTGAAGCACAGGCTGTAC+AGG | 0.479774 | 4.4:-10996861 | MS.gene28046:CDS |
| GGCCTTTGCCCTGGTATCCC+GGG | 0.479981 | 4.4:-11003438 | MS.gene28046:CDS |
| TCCCAGGATGCCGTTTAAAA+GGG | 0.480126 | 4.4:-11001319 | MS.gene28046:CDS |
| ATGATTAGTAACAATTAGGT+TGG | 0.480820 | 4.4:+11001355 | None:intergenic |
| GAGGTGAGACAGAGGCGATT+CGG | 0.481360 | 4.4:-11003459 | MS.gene28046:CDS |
| CATAACCAAGCAAATTATAC+AGG | 0.483742 | 4.4:-10997298 | MS.gene28046:CDS |
| GGACTTCAAGCGTCTTCTGC+AGG | 0.483971 | 4.4:-10997265 | MS.gene28046:CDS |
| TAGGGCGAGGTTGTCCGTGA+TGG | 0.485207 | 4.4:-10996987 | MS.gene28046:CDS |
| TAATTGTTGATCCACAAGAA+TGG | 0.487617 | 4.4:-11003790 | MS.gene28046:CDS |
| TTTGCCAGAAGGAAACATAC+TGG | 0.491351 | 4.4:+10998969 | None:intergenic |
| AATCGGATGCTGGAGGGGTA+GGG | 0.491437 | 4.4:-10997005 | MS.gene28046:CDS |
| ACCTTCCATTTCTTGAGACC+TGG | 0.495511 | 4.4:+10999705 | None:intergenic |
| ATGATGCAGGCAATGGTGTT+CGG | 0.497996 | 4.4:+11003747 | None:intergenic |
| AAGAATAAGGGGCAATCCTT+CGG | 0.498704 | 4.4:+10997326 | None:intergenic |
| TTGCAGCACAGCAATGAAGA+AGG | 0.499587 | 4.4:+10998759 | None:intergenic |
| CAACAATAGCAATCGGATGC+TGG | 0.499828 | 4.4:-10997015 | MS.gene28046:CDS |
| GACAATTCCTCTAACTATGT+TGG | 0.501847 | 4.4:-10996884 | MS.gene28046:CDS |
| AGAAAATGGCTCTTCTGGGC+AGG | 0.504580 | 4.4:-10996909 | MS.gene28046:CDS |
| AAGGCAGCAAACTTATTGCC+TGG | 0.507560 | 4.4:-10997195 | MS.gene28046:CDS |
| AGGAATTCAGGGATGGGACA+AGG | 0.507941 | 4.4:-11001099 | MS.gene28046:CDS |
| AACAATATCCTTGACTGACT+TGG | 0.510238 | 4.4:+10998152 | None:intergenic |
| AGGCGATTCGGCCTTTGCCC+TGG | 0.513851 | 4.4:-11003447 | MS.gene28046:CDS |
| GTCCGTGATGGTCTCTGCAA+TGG | 0.514638 | 4.4:-10996975 | MS.gene28046:CDS |
| AGGATCACTGCCTGATGGAA+TGG | 0.519136 | 4.4:-11001589 | MS.gene28046:intron |
| GACGAGTCAACAATAGCAAT+CGG | 0.521462 | 4.4:-10997022 | MS.gene28046:CDS |
| ATGACACAAACCATTCCATC+AGG | 0.526171 | 4.4:+11001579 | None:intergenic |
| AGAAGACGCTTGAAGTCCTC+AGG | 0.527311 | 4.4:+10997270 | None:intergenic |
| GTAACAAGGTGACCATTGAA+TGG | 0.528418 | 4.4:+10998219 | None:intergenic |
| ACCAGAGCAACCATGGGTAG+AGG | 0.533404 | 4.4:-11003983 | None:intergenic |
| ACGTGAAGAACGGAATTATG+AGG | 0.534432 | 4.4:-10998406 | MS.gene28046:CDS |
| GGTTATTTGTAGGTTGCTGA+AGG | 0.535471 | 4.4:-11003481 | MS.gene28046:intron |
| GTTGCGTTGAACTTCTCGGT+TGG | 0.536011 | 4.4:-10998132 | MS.gene28046:CDS |
| TGATGCCGAGTTTGGTGAAA+AGG | 0.538887 | 4.4:-10997214 | MS.gene28046:CDS |
| CAACTGAAAATGACCTCGGT+TGG | 0.539529 | 4.4:-10998105 | MS.gene28046:CDS |
| TTCCTTGTAATAAGAATCAA+AGG | 0.539742 | 4.4:+11003817 | None:intergenic |
| CGTGCATTCACTTCGCGCTG+AGG | 0.542110 | 4.4:-11003573 | MS.gene28046:intron |
| TCAGCAGACTCCGCCATCAC+AGG | 0.546772 | 4.4:+10998847 | None:intergenic |
| CCACAACTTATTCGTCGGCC+AGG | 0.547313 | 4.4:-10999723 | MS.gene28046:CDS |
| ATCTTCCAAATCATCTGTAT+GGG | 0.548339 | 4.4:+10998440 | None:intergenic |
| TTGTAATAAGAATCAAAGGA+AGG | 0.549320 | 4.4:+11003821 | None:intergenic |
| TGGAAAGAATCACACTTCTA+CGG | 0.550513 | 4.4:+10998989 | None:intergenic |
| AGTAACAATTAGGTTGGCTG+TGG | 0.551773 | 4.4:+11001361 | None:intergenic |
| ATCACACTTCTACGGAACTT+GGG | 0.552405 | 4.4:+10998997 | None:intergenic |
| TCCTGATAGCATTTGCCAGA+AGG | 0.552899 | 4.4:+10998958 | None:intergenic |
| TCGTGACCTTCCTCTACCCA+TGG | 0.553571 | 4.4:+11003973 | None:intergenic |
| TGTAATAAGAATCAAAGGAA+GGG | 0.556130 | 4.4:+11003822 | None:intergenic |
| AAATGGCTCTTCTGGGCAGG+TGG | 0.556454 | 4.4:-10996906 | MS.gene28046:CDS |
| ATACACCAATCCACAAAAGC+AGG | 0.557146 | 4.4:-11001609 | MS.gene28046:CDS |
| TGCACAAAACACAGCAGAGA+AGG | 0.560171 | 4.4:-10998364 | MS.gene28046:CDS |
| AGCTTCCACAACTTATTCGT+CGG | 0.560441 | 4.4:-10999728 | MS.gene28046:CDS |
| CTGTGCGATGTCCCGTGTAG+TGG | 0.563031 | 4.4:-11001239 | MS.gene28046:CDS |
| AATTGGAAATATCACAAGAC+AGG | 0.565338 | 4.4:-11002222 | MS.gene28046:CDS |
| CTATGTTGGAGGTGAAGCAC+AGG | 0.566402 | 4.4:-10996870 | MS.gene28046:CDS |
| ATCCTCATGCAATGCTCTAG+AGG | 0.566410 | 4.4:+10998808 | None:intergenic |
| GAATGCCAAGCAAAGTTCCC+GGG | 0.567018 | 4.4:+11003421 | None:intergenic |
| TTCTGCAGGAATTCAGGGAT+GGG | 0.568230 | 4.4:-11001105 | MS.gene28046:intron |
| TTCCCGGGATACCAGGGCAA+AGG | 0.568734 | 4.4:+11003436 | None:intergenic |
| CATGAAGCACAACATTTCCC+AGG | 0.569181 | 4.4:-11001335 | MS.gene28046:CDS |
| TTTCTGCAGGAATTCAGGGA+TGG | 0.570795 | 4.4:-11001106 | MS.gene28046:intron |
| ATGAATTGATCCCATTCTTG+TGG | 0.571295 | 4.4:+11003779 | None:intergenic |
| GTTATGTATGGAAGAATAAG+GGG | 0.573543 | 4.4:+10997315 | None:intergenic |
| GAATTGATTCTAAATGATGC+AGG | 0.577108 | 4.4:+11003734 | None:intergenic |
| AAGGTCACGAACTCAAAGAA+AGG | 0.577671 | 4.4:-11003960 | MS.gene28046:CDS |
| TTCGTAAGGCACCTGATATG+TGG | 0.580986 | 4.4:-11001205 | MS.gene28046:CDS |
| AAAAGAAAGCTACAATATCA+GGG | 0.582226 | 4.4:-10998333 | MS.gene28046:CDS |
| ATAGCAATCGGATGCTGGAG+GGG | 0.584256 | 4.4:-10997010 | MS.gene28046:CDS |
| TGCTGAAGGAGGTGAGACAG+AGG | 0.584654 | 4.4:-11003467 | MS.gene28046:CDS |
| AATAGCAATCGGATGCTGGA+GGG | 0.585812 | 4.4:-10997011 | MS.gene28046:CDS |
| GGAATTCAGGGATGGGACAA+GGG | 0.587424 | 4.4:-11001098 | MS.gene28046:CDS |
| AATTCCTCTAACTATGTTGG+AGG | 0.587774 | 4.4:-10996881 | MS.gene28046:CDS |
| GTCCTCTAACACGTGAAGAA+CGG | 0.593200 | 4.4:-10998416 | MS.gene28046:CDS |
| TGGAGATGGTACACTTCGTA+AGG | 0.594241 | 4.4:-11001219 | MS.gene28046:CDS |
| TATTTGTAGGTTGCTGAAGG+AGG | 0.594800 | 4.4:-11003478 | MS.gene28046:intron |
| GAACACGATCAAATAACAGT+TGG | 0.595675 | 4.4:+11001261 | None:intergenic |
| GCAAAGTTCCCGGGATACCA+GGG | 0.600427 | 4.4:+11003430 | None:intergenic |
| CTATGTCTCCAAGTCAGTCA+AGG | 0.602696 | 4.4:-10998160 | MS.gene28046:CDS |
| GAAAGACAAACAGCACGAGA+AGG | 0.602807 | 4.4:-10997381 | MS.gene28046:CDS |
| CTTATTGCCTGGTTGTTGCG+TGG | 0.607662 | 4.4:-10997184 | MS.gene28046:CDS |
| AAAGCAGGATCACTGCCTGA+TGG | 0.612819 | 4.4:-11001594 | MS.gene28046:CDS |
| CAATAGCAATCGGATGCTGG+AGG | 0.613159 | 4.4:-10997012 | MS.gene28046:CDS |
| CCTGGCCGACGAATAAGTTG+TGG | 0.613657 | 4.4:+10999723 | None:intergenic |
| TATCAATGTTTCGAGTAACA+AGG | 0.613992 | 4.4:+10998205 | None:intergenic |
| AGACAAACAGCACGAGAAGG+TGG | 0.614134 | 4.4:-10997378 | MS.gene28046:CDS |
| GCTCCAGTGTTCTGATCATG+AGG | 0.618002 | 4.4:+10998781 | None:intergenic |
| GCTTAGGAAGAATCAAACAT+TGG | 0.618665 | 4.4:-11003380 | MS.gene28046:CDS |
| TCCTATTGAAAATGAAGCTG+TGG | 0.620217 | 4.4:-11000105 | MS.gene28046:CDS |
| ATGCCTCATGATCAGAACAC+TGG | 0.621782 | 4.4:-10998784 | MS.gene28046:CDS |
| GATGTCCCGTGTAGTGGAGA+TGG | 0.622673 | 4.4:-11001233 | MS.gene28046:CDS |
| GGAAGATGACATTACTAGTG+TGG | 0.624217 | 4.4:-10998911 | MS.gene28046:CDS |
| AGGTATATGACAAGAGCAGT+TGG | 0.624400 | 4.4:-10999041 | MS.gene28046:CDS |
| GATGATATCCGGAAAGCACA+TGG | 0.628461 | 4.4:+10997348 | None:intergenic |
| GAGCAACCATGGGTAGAGGA+AGG | 0.629891 | 4.4:-11003979 | None:intergenic |
| TGTGATGGCGGAGTCTGCTG+AGG | 0.636017 | 4.4:-10998845 | MS.gene28046:CDS |
| ATAATAACCACGCAACAACC+AGG | 0.639292 | 4.4:+10997177 | None:intergenic |
| ATTCTAAATGATGCAGGCAA+TGG | 0.639368 | 4.4:+11003740 | None:intergenic |
| CATATGAGACTACCTGGCAG+AGG | 0.641063 | 4.4:+10998727 | None:intergenic |
| TTCCTCTAGAGCATTGCATG+AGG | 0.643867 | 4.4:-10998810 | MS.gene28046:CDS |
| GAATGCACATCCAAGAATAG+GGG | 0.644846 | 4.4:+11001811 | None:intergenic |
| GCCAGGTCTCAAGAAATGGA+AGG | 0.649652 | 4.4:-10999706 | MS.gene28046:intron |
| CAATATCAGGGAAAATGGAG+AGG | 0.651832 | 4.4:-10998321 | MS.gene28046:CDS |
| TGCACATCCAAGAATAGGGG+AGG | 0.651957 | 4.4:+11001814 | None:intergenic |
| AGTGTACCATCTCCACTACA+CGG | 0.655332 | 4.4:+11001227 | None:intergenic |
| TGGCGATTGTAATGTTGACA+TGG | 0.655390 | 4.4:-10998932 | MS.gene28046:CDS |
| AATTATACAGGCATCTCCTG+AGG | 0.656008 | 4.4:-10997286 | MS.gene28046:CDS |
| ACTAGAGAATCCTGTGATGG+CGG | 0.657341 | 4.4:-10998857 | MS.gene28046:CDS |
| GTGTACCATCTCCACTACAC+GGG | 0.658766 | 4.4:+11001228 | None:intergenic |
| GGAAGAATCAAACATTGGAG+AGG | 0.660823 | 4.4:-11003375 | MS.gene28046:intron |
| AGCACTAGAGAATCCTGTGA+TGG | 0.665290 | 4.4:-10998860 | MS.gene28046:CDS |
| GTAAGGCACCTGATATGTGG+CGG | 0.665415 | 4.4:-11001202 | MS.gene28046:CDS |
| GCTTTCCGGATATCATCCGA+AGG | 0.673685 | 4.4:-10997342 | MS.gene28046:CDS |
| ACCTAGCAAACAGAGTCTTG+AGG | 0.674715 | 4.4:-10998550 | MS.gene28046:CDS |
| AAATGAAGCTGTGGTTGCAG+AGG | 0.679409 | 4.4:-11000096 | MS.gene28046:intron |
| GTCCATTGCAGAGACCATCA+CGG | 0.681705 | 4.4:+10996973 | None:intergenic |
| GTTTCAGATGAATTCATGTG+TGG | 0.689496 | 4.4:+10998516 | None:intergenic |
| TCAGCAACTGAAAATGACCT+CGG | 0.702374 | 4.4:-10998109 | MS.gene28046:CDS |
| AGTCGTCAAAGCAGTTCCAG+AGG | 0.703422 | 4.4:-10998484 | MS.gene28046:CDS |
| AAACATCTTCATGCCAACCG+AGG | 0.713060 | 4.4:+10998092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10996814 | 11003993 | 10996814 | ID=MS.gene28046 |
| chr4.4 | mRNA | 10996814 | 11003993 | 10996814 | ID=MS.gene28046.t1;Parent=MS.gene28046 |
| chr4.4 | exon | 11003731 | 11003993 | 11003731 | ID=MS.gene28046.t1.exon1;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11003731 | 11003993 | 11003731 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11003574 | 11003640 | 11003574 | ID=MS.gene28046.t1.exon2;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11003574 | 11003640 | 11003574 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11003376 | 11003491 | 11003376 | ID=MS.gene28046.t1.exon3;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11003376 | 11003491 | 11003376 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11002208 | 11002274 | 11002208 | ID=MS.gene28046.t1.exon4;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11002208 | 11002274 | 11002208 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11001791 | 11001839 | 11001791 | ID=MS.gene28046.t1.exon5;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11001791 | 11001839 | 11001791 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11001590 | 11001675 | 11001590 | ID=MS.gene28046.t1.exon6;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11001590 | 11001675 | 11001590 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11001197 | 11001447 | 11001197 | ID=MS.gene28046.t1.exon7;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11001197 | 11001447 | 11001197 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11001064 | 11001119 | 11001064 | ID=MS.gene28046.t1.exon8;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11001064 | 11001119 | 11001064 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 11000097 | 11000182 | 11000097 | ID=MS.gene28046.t1.exon9;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 11000097 | 11000182 | 11000097 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 10999707 | 10999799 | 10999707 | ID=MS.gene28046.t1.exon10;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 10999707 | 10999799 | 10999707 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 10998740 | 10999061 | 10998740 | ID=MS.gene28046.t1.exon11;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 10998740 | 10999061 | 10998740 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 10998092 | 10998585 | 10998092 | ID=MS.gene28046.t1.exon12;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 10998092 | 10998585 | 10998092 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 10997169 | 10997403 | 10997169 | ID=MS.gene28046.t1.exon13;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 10997169 | 10997403 | 10997169 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| chr4.4 | exon | 10996814 | 10997076 | 10996814 | ID=MS.gene28046.t1.exon14;Parent=MS.gene28046.t1 |
| chr4.4 | CDS | 10996814 | 10997076 | 10996814 | ID=cds.MS.gene28046.t1;Parent=MS.gene28046.t1 |
| Gene Sequence |
| Protein sequence |
