Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061811.t1 | KEH20796.1 | 95 | 818 | 40 | 1 | 1 | 817 | 1 | 818 | 0.00E+00 | 1545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061811.t1 | Q5ZLV4 | 36.9 | 720 | 370 | 18 | 49 | 761 | 44 | 686 | 3.8e-119 | 430.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061811.t1 | A0A072TUE4 | 95.0 | 818 | 40 | 1 | 1 | 817 | 1 | 818 | 0.0e+00 | 1545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061811 | 0.845875 | 3.09E-59 | -1.69E-46 |
| MS.gene049350 | MS.gene061811 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene061811 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene061811 | 0.80051 | 1.39E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene061811 | 0.81437 | 1.59E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene061811 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene061811 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene061811 | 0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene061811 | 0.824408 | 8.20E-54 | -1.69E-46 |
| MS.gene051450 | MS.gene061811 | 0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene061811 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene061811 | 0.822346 | 2.49E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene061811 | 0.815085 | 1.11E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene061811 | 0.804472 | 2.13E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene061811 | 0.800042 | 1.74E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene061811 | 0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene061811 | 0.823184 | 1.59E-53 | -1.69E-46 |
| MS.gene052681 | MS.gene061811 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene061811 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene061811 | 0.859112 | 5.18E-63 | -1.69E-46 |
| MS.gene053143 | MS.gene061811 | 0.849118 | 3.97E-60 | -1.69E-46 |
| MS.gene053144 | MS.gene061811 | 0.803035 | 4.22E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene061811 | 0.822 | 2.99E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene061811 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene061811 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene055386 | MS.gene061811 | 0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene061811 | 0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene061811 | 0.833195 | 6.13E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene061811 | 0.871141 | 8.57E-67 | -1.69E-46 |
| MS.gene055537 | MS.gene061811 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene061811 | -0.82395 | 1.05E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene061811 | -0.818514 | 1.88E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene061811 | 0.827909 | 1.21E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene061811 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene061811 | 0.807458 | 5.01E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene061811 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene061811 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene061811 | 0.816823 | 4.53E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene061811 | 0.824168 | 9.34E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene061811 | 0.879838 | 8.99E-70 | -1.69E-46 |
| MS.gene059146 | MS.gene061811 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene061811 | 0.8166 | 5.09E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene061811 | 0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene061811 | 0.80377 | 2.97E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene061811 | -0.820357 | 7.16E-53 | -1.69E-46 |
| MS.gene059901 | MS.gene061811 | -0.822565 | 2.21E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene061811 | 0.821353 | 4.22E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene061811 | 0.866537 | 2.65E-65 | -1.69E-46 |
| MS.gene061160 | MS.gene061811 | 0.819015 | 1.45E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene061811 | 0.800781 | 1.23E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061811.t1 | MTR_8g089980 | 96.699 | 818 | 26 | 1 | 1 | 817 | 1 | 818 | 0.0 | 1645 |
| MS.gene061811.t1 | MTR_3g086950 | 66.709 | 784 | 221 | 9 | 1 | 767 | 1 | 761 | 0.0 | 1056 |
| MS.gene061811.t1 | MTR_3g460700 | 30.876 | 217 | 118 | 6 | 166 | 378 | 296 | 484 | 4.78e-18 | 89.4 |
| MS.gene061811.t1 | MTR_5g096020 | 33.728 | 169 | 86 | 7 | 185 | 351 | 340 | 484 | 1.35e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061811.t1 | AT2G22400 | 60.396 | 808 | 276 | 14 | 8 | 788 | 11 | 801 | 0.0 | 972 |
| MS.gene061811.t1 | AT4G40000 | 57.269 | 791 | 292 | 11 | 1 | 773 | 1 | 763 | 0.0 | 875 |
| MS.gene061811.t1 | AT4G40000 | 55.382 | 576 | 214 | 10 | 216 | 773 | 1 | 551 | 0.0 | 608 |
| MS.gene061811.t1 | AT4G26600 | 29.730 | 296 | 157 | 12 | 166 | 445 | 327 | 587 | 4.11e-17 | 86.3 |
| MS.gene061811.t1 | AT4G26600 | 29.730 | 296 | 157 | 12 | 166 | 445 | 327 | 587 | 4.89e-17 | 86.3 |
| MS.gene061811.t1 | AT5G55920 | 30.244 | 205 | 111 | 6 | 161 | 359 | 339 | 517 | 2.75e-16 | 84.0 |
| MS.gene061811.t1 | AT4G26600 | 31.313 | 198 | 108 | 4 | 166 | 359 | 327 | 500 | 3.55e-16 | 82.8 |
| MS.gene061811.t1 | AT4G26600 | 29.954 | 217 | 120 | 5 | 166 | 378 | 327 | 515 | 3.73e-16 | 83.2 |
| MS.gene061811.t1 | AT3G13180 | 31.361 | 169 | 90 | 4 | 185 | 351 | 334 | 478 | 5.33e-13 | 72.8 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCAGGATGCCGTTTAAA+AGG | 0.190650 | 4.3:-10469121 | MS.gene061811:CDS |
| TAAAAGAAAGCTACAATATC+AGG | 0.193012 | 4.3:-10466119 | MS.gene061811:CDS |
| TTTACTTTCTGCAGGAATTC+AGG | 0.226926 | 4.3:-10468912 | MS.gene061811:intron |
| TTCCGTTCTTGCAGCTATTC+TGG | 0.233522 | 4.3:-10466362 | MS.gene061811:intron |
| GCTCTTCACCATGTGCTTTC+CGG | 0.245863 | 4.3:-10465134 | MS.gene061811:CDS |
| CTTCATGATTAGTAACAATT+AGG | 0.246866 | 4.3:+10469152 | None:intergenic |
| TGGTTGTTGCGTGGTTATTA+TGG | 0.247821 | 4.3:-10464953 | MS.gene061811:CDS |
| TTAAAGCTAGAAAATGAAAT+TGG | 0.254499 | 4.3:-10470036 | MS.gene061811:CDS |
| GGCACAGAAAATGGCTCTTC+TGG | 0.261873 | 4.3:-10464698 | MS.gene061811:CDS |
| CTTTCCAGTATGTTTCCTTC+TGG | 0.278031 | 4.3:-10466765 | MS.gene061811:CDS |
| TCCTTCTGGCAAATGCTATC+AGG | 0.284071 | 4.3:-10466751 | MS.gene061811:CDS |
| CATCATTTAGAATCAATTCT+AGG | 0.285604 | 4.3:-10471518 | MS.gene061811:intron |
| GATGAGCGCTTTCCATTTGA+TGG | 0.299140 | 4.3:-10466016 | MS.gene061811:CDS |
| GGTTTATCTTTACTCAAAAT+CGG | 0.300019 | 4.3:-10467953 | MS.gene061811:CDS |
| AAAGTCTTGCAAGCAATTCT+TGG | 0.304314 | 4.3:+10464732 | None:intergenic |
| ACGGAACTTGGGAACATCTT+TGG | 0.305209 | 4.3:+10466800 | None:intergenic |
| TTCCGTTCTTCACGTGTTAG+AGG | 0.306424 | 4.3:+10466199 | None:intergenic |
| ATAGGTTCCTCCCCTATTCT+TGG | 0.312286 | 4.3:-10469622 | MS.gene061811:intron |
| TGGTTATGTATGGAAGAATA+AGG | 0.325256 | 4.3:+10465091 | None:intergenic |
| TGTATCCCATACAGATGATT+TGG | 0.333655 | 4.3:-10466230 | MS.gene061811:CDS |
| ATACGTCTAGGCACAGAAAA+TGG | 0.356138 | 4.3:-10464707 | MS.gene061811:CDS |
| TACCATTTCCGCCACATATC+AGG | 0.360042 | 4.3:+10468995 | None:intergenic |
| GGTTGTTGCGTGGTTATTAT+GGG | 0.360528 | 4.3:-10464952 | MS.gene061811:CDS |
| GTCAAAACAGAGAAAACGTT+TGG | 0.362743 | 4.3:-10471719 | MS.gene061811:CDS |
| CGGCCTTTGCCCTGGTATCC+CGG | 0.363804 | 4.3:-10471222 | MS.gene061811:CDS |
| GTTTATCTTTACTCAAAATC+GGG | 0.381887 | 4.3:-10467952 | MS.gene061811:CDS |
| CTGAATGCACATCCAAGAAT+AGG | 0.383509 | 4.3:+10469610 | None:intergenic |
| AATCACACTTCTACGGAACT+TGG | 0.388539 | 4.3:+10466788 | None:intergenic |
| TATCTTCCAAATCATCTGTA+TGG | 0.390960 | 4.3:+10466224 | None:intergenic |
| TGAATGCACATCCAAGAATA+GGG | 0.393782 | 4.3:+10469611 | None:intergenic |
| GCTTACTGTCAAGTACAAAA+TGG | 0.398024 | 4.3:+10469586 | None:intergenic |
| AACACAGCAGAGAAGGTTCC+AGG | 0.405306 | 4.3:-10466142 | MS.gene061811:CDS |
| AGCAAAGTTCCCGGGATACC+AGG | 0.408224 | 4.3:+10471212 | None:intergenic |
| AGCTACAATATCAGGGCAAA+TGG | 0.412664 | 4.3:-10466111 | MS.gene061811:CDS |
| TTACTTTCTGCAGGAATTCA+GGG | 0.413804 | 4.3:-10468911 | MS.gene061811:intron |
| GTCGGCCAGGTCTCAAGAAA+TGG | 0.414879 | 4.3:-10467502 | MS.gene061811:CDS |
| CACCTGATATGTGGCGGAAA+TGG | 0.415761 | 4.3:-10468997 | MS.gene061811:intron |
| AAGACAGGAAGCTGTTAGTA+TGG | 0.418992 | 4.3:-10470004 | MS.gene061811:intron |
| TATTGTTGCGTTGAACTTCT+CGG | 0.421626 | 4.3:-10465921 | MS.gene061811:CDS |
| CAATCGGATGCTGGAGGGGT+AGG | 0.425361 | 4.3:-10464790 | MS.gene061811:CDS |
| TTCACCTCCAACATAGTTAG+AGG | 0.427601 | 4.3:+10464661 | None:intergenic |
| ATAATTTGCTTGGTTATGTA+TGG | 0.434010 | 4.3:+10465081 | None:intergenic |
| GCATAGCAATTAAAACTTGT+AGG | 0.441578 | 4.3:+10468868 | None:intergenic |
| GGTTATGTATGGAAGAATAA+GGG | 0.441749 | 4.3:+10465092 | None:intergenic |
| TGAATGCCAAGCAAAGTTCC+CGG | 0.442297 | 4.3:+10471203 | None:intergenic |
| ATTCTCAAACTACTACTCAT+TGG | 0.443034 | 4.3:-10471653 | MS.gene061811:CDS |
| GGTGTATAGTCTCGAGCAAT+TGG | 0.445281 | 4.3:+10469426 | None:intergenic |
| TTGTTGACTCGTCAACTTTG+AGG | 0.446066 | 4.3:+10464816 | None:intergenic |
| TCGGAGGATAAGGAAGGGTC+TGG | 0.446587 | 4.3:+10471678 | None:intergenic |
| AATTGTTGATCCACAAGAAT+GGG | 0.449501 | 4.3:-10471577 | MS.gene061811:CDS |
| GGCAAATGCTATCAGGATCT+TGG | 0.450132 | 4.3:-10466744 | MS.gene061811:CDS |
| GGTATCCCGGGAACTTTGCT+TGG | 0.450478 | 4.3:-10471209 | MS.gene061811:CDS |
| AGCACTAGAGAATCCTTTGA+TGG | 0.450855 | 4.3:-10466646 | MS.gene061811:CDS |
| TGTTGACTCGTCAACTTTGA+GGG | 0.452988 | 4.3:+10464817 | None:intergenic |
| AAAAGGGAATTATGAAAGAA+TGG | 0.453153 | 4.3:-10469104 | MS.gene061811:CDS |
| TGATGATATTCGTTCCCAAT+TGG | 0.458564 | 4.3:-10471394 | MS.gene061811:CDS |
| GATAAGGAAGGGTCTGGATC+TGG | 0.459026 | 4.3:+10471684 | None:intergenic |
| GCACAGAAAATGGCTCTTCT+GGG | 0.461885 | 4.3:-10464697 | MS.gene061811:CDS |
| TCCTCAAGACTCTGTTTGCT+AGG | 0.463373 | 4.3:+10466334 | None:intergenic |
| GGACTTCAAGCGTCTTCTGC+AGG | 0.467959 | 4.3:-10465043 | MS.gene061811:CDS |
| TGCGTGGTTATTATGGGTAA+AGG | 0.468510 | 4.3:-10464946 | MS.gene061811:intron |
| GCAATCCTTCGGATGATATC+CGG | 0.470647 | 4.3:+10465115 | None:intergenic |
| GATGCTGGAGGGGTAGGGCG+AGG | 0.471870 | 4.3:-10464784 | MS.gene061811:CDS |
| TTCCTTTGATTCTTATTACA+AGG | 0.477035 | 4.3:-10471607 | MS.gene061811:CDS |
| AGGTGAAGCACAGGCTGTAC+AGG | 0.479774 | 4.3:-10464645 | MS.gene061811:CDS |
| GGCCTTTGCCCTGGTATCCC+GGG | 0.479981 | 4.3:-10471221 | MS.gene061811:CDS |
| TCCCAGGATGCCGTTTAAAA+GGG | 0.480126 | 4.3:-10469120 | MS.gene061811:CDS |
| ATGATTAGTAACAATTAGGT+TGG | 0.480820 | 4.3:+10469156 | None:intergenic |
| GAGGTGAGACAGAGGCGATT+CGG | 0.481360 | 4.3:-10471242 | MS.gene061811:CDS |
| CATAACCAAGCAAATTATAC+AGG | 0.483742 | 4.3:-10465076 | MS.gene061811:CDS |
| TAGGGCGAGGTTGTCCGTGA+TGG | 0.485207 | 4.3:-10464771 | MS.gene061811:CDS |
| TAATTGTTGATCCACAAGAA+TGG | 0.487617 | 4.3:-10471578 | MS.gene061811:CDS |
| AGATGCCTGTATAATTTGCT+TGG | 0.489845 | 4.3:+10465071 | None:intergenic |
| TTTGCCAGAAGGAAACATAC+TGG | 0.491351 | 4.3:+10466761 | None:intergenic |
| AATCGGATGCTGGAGGGGTA+GGG | 0.491437 | 4.3:-10464789 | MS.gene061811:CDS |
| CAGAAGACGCTTGAAGTCCT+CGG | 0.494208 | 4.3:+10465047 | None:intergenic |
| ACCTTCCATTTCTTGAGACC+TGG | 0.495511 | 4.3:+10467497 | None:intergenic |
| ATGATGCAGGCAATGGTGTT+CGG | 0.497996 | 4.3:+10471535 | None:intergenic |
| AAGAATAAGGGGCAATCCTT+CGG | 0.498704 | 4.3:+10465104 | None:intergenic |
| TTGCAGCACAGCAATGAAGA+AGG | 0.499587 | 4.3:+10466545 | None:intergenic |
| CAACAATAGCAATCGGATGC+TGG | 0.499828 | 4.3:-10464799 | MS.gene061811:CDS |
| GACAATTCCTCTAACTATGT+TGG | 0.501847 | 4.3:-10464668 | MS.gene061811:CDS |
| GTAACAAGGTGACCATCAAA+TGG | 0.503653 | 4.3:+10466004 | None:intergenic |
| AGAAAATGGCTCTTCTGGGC+AGG | 0.504580 | 4.3:-10464693 | MS.gene061811:CDS |
| AAGGCAGCAAACTTATTGCC+TGG | 0.507560 | 4.3:-10464973 | MS.gene061811:CDS |
| AGGAATTCAGGGATGGGACA+AGG | 0.507941 | 4.3:-10468900 | MS.gene061811:CDS |
| AACAATATCCTTGACTGACT+TGG | 0.510238 | 4.3:+10465937 | None:intergenic |
| AGGCGATTCGGCCTTTGCCC+TGG | 0.513851 | 4.3:-10471230 | MS.gene061811:CDS |
| GTCCGTGATGGTCTCTGCAA+TGG | 0.514638 | 4.3:-10464759 | MS.gene061811:CDS |
| AGGATCACTGCCTGATGGAA+TGG | 0.519136 | 4.3:-10469390 | MS.gene061811:intron |
| GACGAGTCAACAATAGCAAT+CGG | 0.521462 | 4.3:-10464806 | MS.gene061811:CDS |
| AGAAGACGCTTGAAGTCCTC+GGG | 0.525989 | 4.3:+10465048 | None:intergenic |
| ATGACACAAACCATTCCATC+AGG | 0.526171 | 4.3:+10469380 | None:intergenic |
| ACCAGAGCAACCATGGGTAG+AGG | 0.533404 | 4.3:-10471771 | None:intergenic |
| GGTTATTTGTAGGTTGCTGA+AGG | 0.535471 | 4.3:-10471264 | MS.gene061811:intron |
| GTTGCGTTGAACTTCTCGGT+TGG | 0.536011 | 4.3:-10465917 | MS.gene061811:CDS |
| TGATGCCGAGTTTGGTGAAA+AGG | 0.538887 | 4.3:-10464992 | MS.gene061811:CDS |
| CAACTGAAAATGACCTCGGT+TGG | 0.539529 | 4.3:-10465890 | MS.gene061811:CDS |
| TTCCTTGTAATAAGAATCAA+AGG | 0.539742 | 4.3:+10471605 | None:intergenic |
| CGTGCATTCACTTCGCGCTG+AGG | 0.542110 | 4.3:-10471361 | MS.gene061811:intron |
| CCACAACTTATTCGTCGGCC+AGG | 0.547313 | 4.3:-10467515 | MS.gene061811:CDS |
| ATCTTCCAAATCATCTGTAT+GGG | 0.548339 | 4.3:+10466225 | None:intergenic |
| TTGTAATAAGAATCAAAGGA+AGG | 0.549320 | 4.3:+10471609 | None:intergenic |
| TGGAAAGAATCACACTTCTA+CGG | 0.550513 | 4.3:+10466781 | None:intergenic |
| AGTAACAATTAGGTTGGCTG+TGG | 0.551773 | 4.3:+10469162 | None:intergenic |
| ATCACACTTCTACGGAACTT+GGG | 0.552405 | 4.3:+10466789 | None:intergenic |
| TCCTGATAGCATTTGCCAGA+AGG | 0.552899 | 4.3:+10466750 | None:intergenic |
| TCGTGACCTTCCTCTACCCA+TGG | 0.553571 | 4.3:+10471761 | None:intergenic |
| TTTATCTTTACTCAAAATCG+GGG | 0.553832 | 4.3:-10467951 | MS.gene061811:CDS |
| TGTAATAAGAATCAAAGGAA+GGG | 0.556130 | 4.3:+10471610 | None:intergenic |
| AAATGGCTCTTCTGGGCAGG+TGG | 0.556454 | 4.3:-10464690 | MS.gene061811:CDS |
| ATACACCAATCCACAAAAGC+AGG | 0.557146 | 4.3:-10469410 | MS.gene061811:CDS |
| TCAGCAGACTCCTCCATCAA+AGG | 0.560066 | 4.3:+10466633 | None:intergenic |
| TGCACAAAACACAGCAGAGA+AGG | 0.560171 | 4.3:-10466149 | MS.gene061811:CDS |
| AGCTTCCACAACTTATTCGT+CGG | 0.560441 | 4.3:-10467520 | MS.gene061811:CDS |
| CTGTGCGATGTCCCGTGTAG+TGG | 0.563031 | 4.3:-10469040 | MS.gene061811:CDS |
| AATTGGAAATATCACAAGAC+AGG | 0.565338 | 4.3:-10470019 | MS.gene061811:CDS |
| CTATGTTGGAGGTGAAGCAC+AGG | 0.566402 | 4.3:-10464654 | MS.gene061811:CDS |
| ATCCTCATGCAATGCTCTAG+AGG | 0.566410 | 4.3:+10466594 | None:intergenic |
| GAATGCCAAGCAAAGTTCCC+GGG | 0.567018 | 4.3:+10471204 | None:intergenic |
| TTCTGCAGGAATTCAGGGAT+GGG | 0.568230 | 4.3:-10468906 | MS.gene061811:intron |
| TTCCCGGGATACCAGGGCAA+AGG | 0.568734 | 4.3:+10471219 | None:intergenic |
| CATGAAGCACAACATTTCCC+AGG | 0.569181 | 4.3:-10469136 | MS.gene061811:CDS |
| TTTCTGCAGGAATTCAGGGA+TGG | 0.570795 | 4.3:-10468907 | MS.gene061811:intron |
| ATGAATTGATCCCATTCTTG+TGG | 0.571295 | 4.3:+10471567 | None:intergenic |
| GTTATGTATGGAAGAATAAG+GGG | 0.573543 | 4.3:+10465093 | None:intergenic |
| GAATTGATTCTAAATGATGC+AGG | 0.577108 | 4.3:+10471522 | None:intergenic |
| AAGGTCACGAACTCAAAGAA+AGG | 0.577671 | 4.3:-10471748 | MS.gene061811:CDS |
| TTCGTAAGGCACCTGATATG+TGG | 0.580986 | 4.3:-10469006 | MS.gene061811:CDS |
| AAAAGAAAGCTACAATATCA+GGG | 0.582226 | 4.3:-10466118 | MS.gene061811:CDS |
| ATAGCAATCGGATGCTGGAG+GGG | 0.584256 | 4.3:-10464794 | MS.gene061811:CDS |
| TGCTGAAGGAGGTGAGACAG+AGG | 0.584654 | 4.3:-10471250 | MS.gene061811:CDS |
| TATCAATGTTTCGTGTAACA+AGG | 0.585607 | 4.3:+10465990 | None:intergenic |
| AATAGCAATCGGATGCTGGA+GGG | 0.585812 | 4.3:-10464795 | MS.gene061811:CDS |
| GGAATTCAGGGATGGGACAA+GGG | 0.587424 | 4.3:-10468899 | MS.gene061811:CDS |
| AATTCCTCTAACTATGTTGG+AGG | 0.587774 | 4.3:-10464665 | MS.gene061811:CDS |
| GTCCTCTAACACGTGAAGAA+CGG | 0.593200 | 4.3:-10466201 | MS.gene061811:CDS |
| TGGAGATGGTACACTTCGTA+AGG | 0.594241 | 4.3:-10469020 | MS.gene061811:CDS |
| TATTTGTAGGTTGCTGAAGG+AGG | 0.594800 | 4.3:-10471261 | MS.gene061811:intron |
| GAACACGATCAAATAACAGT+TGG | 0.595675 | 4.3:+10469062 | None:intergenic |
| GCAAAGTTCCCGGGATACCA+GGG | 0.600427 | 4.3:+10471213 | None:intergenic |
| CTATGTCTCCAAGTCAGTCA+AGG | 0.602696 | 4.3:-10465945 | MS.gene061811:CDS |
| GAAAGACAAACAGCACGAGA+AGG | 0.602807 | 4.3:-10465159 | MS.gene061811:CDS |
| CTTATTGCCTGGTTGTTGCG+TGG | 0.607662 | 4.3:-10464962 | MS.gene061811:CDS |
| AAAGCAGGATCACTGCCTGA+TGG | 0.612819 | 4.3:-10469395 | MS.gene061811:CDS |
| CAATAGCAATCGGATGCTGG+AGG | 0.613159 | 4.3:-10464796 | MS.gene061811:CDS |
| CCTGGCCGACGAATAAGTTG+TGG | 0.613657 | 4.3:+10467515 | None:intergenic |
| AGACAAACAGCACGAGAAGG+TGG | 0.614134 | 4.3:-10465156 | MS.gene061811:CDS |
| GCTCCAGTGTTCTGATCATG+AGG | 0.618002 | 4.3:+10466567 | None:intergenic |
| GCTTAGGAAGAATCAAACAT+TGG | 0.618665 | 4.3:-10471163 | MS.gene061811:CDS |
| TCCTATTGAAAATGAAGCTG+TGG | 0.620217 | 4.3:-10467897 | MS.gene061811:CDS |
| ATGCCTCATGATCAGAACAC+TGG | 0.621782 | 4.3:-10466570 | MS.gene061811:CDS |
| GATGTCCCGTGTAGTGGAGA+TGG | 0.622673 | 4.3:-10469034 | MS.gene061811:CDS |
| GGAAGATGACATTACTAGTG+TGG | 0.624217 | 4.3:-10466697 | MS.gene061811:CDS |
| AGGTATATGACAAGAGCAGT+TGG | 0.624400 | 4.3:-10466833 | MS.gene061811:CDS |
| GATGATATCCGGAAAGCACA+TGG | 0.628461 | 4.3:+10465126 | None:intergenic |
| GAGCAACCATGGGTAGAGGA+AGG | 0.629891 | 4.3:-10471767 | None:intergenic |
| CAATATCAGGGCAAATGGAG+AGG | 0.631567 | 4.3:-10466106 | MS.gene061811:CDS |
| ATAATAACCACGCAACAACC+AGG | 0.639292 | 4.3:+10464955 | None:intergenic |
| ATTCTAAATGATGCAGGCAA+TGG | 0.639368 | 4.3:+10471528 | None:intergenic |
| CATATGAGACTACCTGGCAG+AGG | 0.641063 | 4.3:+10466513 | None:intergenic |
| TTCCTCTAGAGCATTGCATG+AGG | 0.643867 | 4.3:-10466596 | MS.gene061811:CDS |
| TTTGATGGAGGAGTCTGCTG+AGG | 0.644695 | 4.3:-10466631 | MS.gene061811:CDS |
| GAATGCACATCCAAGAATAG+GGG | 0.644846 | 4.3:+10469612 | None:intergenic |
| ACGTGAAGAACGGAATTCTG+AGG | 0.648938 | 4.3:-10466191 | MS.gene061811:CDS |
| GCCAGGTCTCAAGAAATGGA+AGG | 0.649652 | 4.3:-10467498 | MS.gene061811:intron |
| TAGTAATTGTAATGTTGACA+TGG | 0.651091 | 4.3:-10466718 | MS.gene061811:CDS |
| TGCACATCCAAGAATAGGGG+AGG | 0.651957 | 4.3:+10469615 | None:intergenic |
| AGTGTACCATCTCCACTACA+CGG | 0.655332 | 4.3:+10469028 | None:intergenic |
| ACTAGAGAATCCTTTGATGG+AGG | 0.658377 | 4.3:-10466643 | MS.gene061811:CDS |
| GTGTACCATCTCCACTACAC+GGG | 0.658766 | 4.3:+10469029 | None:intergenic |
| AATTATACAGGCATCTCCCG+AGG | 0.660476 | 4.3:-10465064 | MS.gene061811:CDS |
| GGAAGAATCAAACATTGGAG+AGG | 0.660823 | 4.3:-10471158 | MS.gene061811:intron |
| GTAAGGCACCTGATATGTGG+CGG | 0.665415 | 4.3:-10469003 | MS.gene061811:CDS |
| GCTTTCCGGATATCATCCGA+AGG | 0.673685 | 4.3:-10465120 | MS.gene061811:CDS |
| ACCTAGCAAACAGAGTCTTG+AGG | 0.674715 | 4.3:-10466335 | MS.gene061811:CDS |
| AAATGAAGCTGTGGTTGCAG+AGG | 0.679409 | 4.3:-10467888 | MS.gene061811:intron |
| GTCCATTGCAGAGACCATCA+CGG | 0.681705 | 4.3:+10464757 | None:intergenic |
| TTATCTTTACTCAAAATCGG+GGG | 0.696495 | 4.3:-10467950 | MS.gene061811:CDS |
| TCAGCAACTGAAAATGACCT+CGG | 0.702374 | 4.3:-10465894 | MS.gene061811:CDS |
| AGTCGTCAAAGCAGTTCCAG+AGG | 0.703422 | 4.3:-10466269 | MS.gene061811:CDS |
| AAACATCTTCATGCCAACCG+AGG | 0.713060 | 4.3:+10465877 | None:intergenic |
| GTTTCAGATGAATTCATGTG+CGG | 0.725014 | 4.3:+10466301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 10464598 | 10471781 | 10464598 | ID=MS.gene061811 |
| chr4.3 | mRNA | 10464598 | 10471781 | 10464598 | ID=MS.gene061811.t1;Parent=MS.gene061811 |
| chr4.3 | exon | 10471519 | 10471781 | 10471519 | ID=MS.gene061811.t1.exon1;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10471519 | 10471781 | 10471519 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10471362 | 10471428 | 10471362 | ID=MS.gene061811.t1.exon2;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10471362 | 10471428 | 10471362 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10471159 | 10471274 | 10471159 | ID=MS.gene061811.t1.exon3;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10471159 | 10471274 | 10471159 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10470005 | 10470071 | 10470005 | ID=MS.gene061811.t1.exon4;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10470005 | 10470071 | 10470005 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10469592 | 10469640 | 10469592 | ID=MS.gene061811.t1.exon5;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10469592 | 10469640 | 10469592 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10469391 | 10469476 | 10469391 | ID=MS.gene061811.t1.exon6;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10469391 | 10469476 | 10469391 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10468998 | 10469248 | 10468998 | ID=MS.gene061811.t1.exon7;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10468998 | 10469248 | 10468998 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10468865 | 10468920 | 10468865 | ID=MS.gene061811.t1.exon8;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10468865 | 10468920 | 10468865 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10467889 | 10467974 | 10467889 | ID=MS.gene061811.t1.exon9;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10467889 | 10467974 | 10467889 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10467499 | 10467591 | 10467499 | ID=MS.gene061811.t1.exon10;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10467499 | 10467591 | 10467499 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10466526 | 10466853 | 10466526 | ID=MS.gene061811.t1.exon11;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10466526 | 10466853 | 10466526 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10465877 | 10466370 | 10465877 | ID=MS.gene061811.t1.exon12;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10465877 | 10466370 | 10465877 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10464947 | 10465181 | 10464947 | ID=MS.gene061811.t1.exon13;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10464947 | 10465181 | 10464947 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| chr4.3 | exon | 10464598 | 10464860 | 10464598 | ID=MS.gene061811.t1.exon14;Parent=MS.gene061811.t1 |
| chr4.3 | CDS | 10464598 | 10464860 | 10464598 | ID=cds.MS.gene061811.t1;Parent=MS.gene061811.t1 |
| Gene Sequence |
| Protein sequence |
