Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68826.t1 | XP_003631014.2 | 73.6 | 382 | 29 | 5 | 1 | 334 | 626 | 983 | 3.20E-141 | 511.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68826.t1 | Q9C5U0 | 49.5 | 394 | 118 | 8 | 1 | 343 | 706 | 1069 | 3.3e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68826.t1 | G7LCC4 | 73.6 | 382 | 29 | 5 | 1 | 334 | 383 | 740 | 2.3e-141 | 511.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene68826 | 0.807687 | 4.48E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene68826 | 0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene049272 | MS.gene68826 | 0.836325 | 1.00E-56 | -1.69E-46 |
| MS.gene049343 | MS.gene68826 | 0.810929 | 9.03E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene68826 | 0.801409 | 9.13E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene68826 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene68826 | 0.81037 | 1.19E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene68826 | 0.853867 | 1.80E-61 | -1.69E-46 |
| MS.gene050029 | MS.gene68826 | 0.825288 | 5.09E-54 | -1.69E-46 |
| MS.gene050031 | MS.gene68826 | 0.825267 | 5.15E-54 | -1.69E-46 |
| MS.gene050043 | MS.gene68826 | 0.824792 | 6.66E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene68826 | 0.811322 | 7.42E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene68826 | 0.836588 | 8.57E-57 | -1.69E-46 |
| MS.gene051181 | MS.gene68826 | 0.815758 | 7.85E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene68826 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene68826 | 0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene68826 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene68826 | 0.808303 | 3.31E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene68826 | 0.829273 | 5.64E-55 | -1.69E-46 |
| MS.gene051957 | MS.gene68826 | 0.807134 | 5.86E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene68826 | 0.851752 | 7.23E-61 | -1.69E-46 |
| MS.gene052208 | MS.gene68826 | 0.817177 | 3.77E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene68826 | -0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene68826 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene68826 | 0.865542 | 5.48E-65 | -1.69E-46 |
| MS.gene052561 | MS.gene68826 | 0.802576 | 5.25E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene68826 | 0.834381 | 3.10E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene68826 | 0.829351 | 5.40E-55 | -1.69E-46 |
| MS.gene052586 | MS.gene68826 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene052685 | MS.gene68826 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene68826 | 0.824372 | 8.36E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene68826 | 0.82485 | 6.46E-54 | -1.69E-46 |
| MS.gene052867 | MS.gene68826 | 0.830453 | 2.91E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene68826 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene68826 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene68826 | 0.816213 | 6.21E-52 | -1.69E-46 |
| MS.gene053145 | MS.gene68826 | 0.824856 | 6.43E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene68826 | 0.811005 | 8.69E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene68826 | 0.829743 | 4.34E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene68826 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene053396 | MS.gene68826 | 0.813145 | 2.97E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene68826 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene68826 | 0.816904 | 4.35E-52 | -1.69E-46 |
| MS.gene053883 | MS.gene68826 | 0.812316 | 4.51E-51 | -1.69E-46 |
| MS.gene053900 | MS.gene68826 | 0.8327 | 8.14E-56 | -1.69E-46 |
| MS.gene053966 | MS.gene68826 | 0.846517 | 2.07E-59 | -1.69E-46 |
| MS.gene053967 | MS.gene68826 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene053974 | MS.gene68826 | 0.806361 | 8.54E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene68826 | 0.81107 | 8.41E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene68826 | 0.822142 | 2.78E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene68826 | 0.827322 | 1.67E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene68826 | 0.825233 | 5.24E-54 | -1.69E-46 |
| MS.gene054291 | MS.gene68826 | -0.843211 | 1.61E-58 | -1.69E-46 |
| MS.gene054467 | MS.gene68826 | 0.803419 | 3.52E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene68826 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene68826 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene68826 | 0.842806 | 2.07E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene68826 | 0.8352 | 1.93E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene68826 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene68826 | 0.809574 | 1.77E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene68826 | 0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene055228 | MS.gene68826 | 0.804443 | 2.15E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene68826 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene68826 | 0.837721 | 4.40E-57 | -1.69E-46 |
| MS.gene055589 | MS.gene68826 | 0.814337 | 1.62E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene68826 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene68826 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene68826 | 0.837718 | 4.41E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene68826 | 0.853001 | 3.19E-61 | -1.69E-46 |
| MS.gene056050 | MS.gene68826 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene68826 | 0.814792 | 1.29E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene68826 | 0.826226 | 3.05E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene68826 | 0.800717 | 1.26E-48 | -1.69E-46 |
| MS.gene056366 | MS.gene68826 | 0.834885 | 2.31E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene68826 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene68826 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene68826 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene057012 | MS.gene68826 | 0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene68826 | 0.818091 | 2.35E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene68826 | 0.836307 | 1.01E-56 | -1.69E-46 |
| MS.gene057027 | MS.gene68826 | 0.808184 | 3.51E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene68826 | 0.810346 | 1.21E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene68826 | 0.811288 | 7.55E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene68826 | 0.856657 | 2.77E-62 | -1.69E-46 |
| MS.gene057915 | MS.gene68826 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene057921 | MS.gene68826 | 0.824896 | 6.29E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene68826 | 0.803468 | 3.44E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene68826 | 0.845329 | 4.35E-59 | -1.69E-46 |
| MS.gene058625 | MS.gene68826 | 0.854188 | 1.45E-61 | -1.69E-46 |
| MS.gene058636 | MS.gene68826 | 0.819927 | 8.98E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene68826 | 0.842645 | 2.28E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene68826 | 0.840117 | 1.05E-57 | -1.69E-46 |
| MS.gene059272 | MS.gene68826 | 0.828656 | 7.96E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene68826 | 0.828556 | 8.42E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene68826 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene68826 | 0.850232 | 1.94E-60 | -1.69E-46 |
| MS.gene059789 | MS.gene68826 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene68826 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene68826 | 0.809822 | 1.57E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene68826 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene68826 | 0.818096 | 2.34E-52 | -1.69E-46 |
| MS.gene060553 | MS.gene68826 | 0.847137 | 1.40E-59 | -1.69E-46 |
| MS.gene060572 | MS.gene68826 | 0.813276 | 2.78E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene68826 | -0.825362 | 4.88E-54 | -1.69E-46 |
| MS.gene060781 | MS.gene68826 | 0.801999 | 6.91E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene68826 | 0.814529 | 1.47E-51 | -1.69E-46 |
| MS.gene060918 | MS.gene68826 | 0.813802 | 2.13E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene68826 | -0.824798 | 6.64E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68826.t1 | MTR_8g106150 | 73.560 | 382 | 29 | 5 | 1 | 334 | 626 | 983 | 0.0 | 540 |
| MS.gene68826.t1 | MTR_8g106150 | 73.560 | 382 | 29 | 5 | 1 | 334 | 383 | 740 | 0.0 | 537 |
| MS.gene68826.t1 | MTR_5g097410 | 39.426 | 383 | 156 | 8 | 2 | 334 | 845 | 1201 | 5.79e-71 | 241 |
| MS.gene68826.t1 | MTR_8g080770 | 39.037 | 374 | 154 | 9 | 2 | 333 | 505 | 846 | 1.18e-70 | 237 |
| MS.gene68826.t1 | MTR_8g080770 | 39.037 | 374 | 154 | 9 | 2 | 333 | 614 | 955 | 4.13e-70 | 236 |
| MS.gene68826.t1 | MTR_3g085130 | 38.583 | 381 | 151 | 9 | 2 | 333 | 463 | 809 | 7.43e-68 | 228 |
| MS.gene68826.t1 | MTR_3g085130 | 38.583 | 381 | 151 | 9 | 2 | 333 | 673 | 1019 | 2.07e-66 | 227 |
| MS.gene68826.t1 | MTR_5g044100 | 42.941 | 170 | 53 | 6 | 129 | 282 | 81 | 222 | 2.13e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 683 | 1046 | 2.99e-107 | 338 |
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 683 | 1046 | 2.99e-107 | 338 |
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 683 | 1046 | 2.99e-107 | 338 |
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 683 | 1046 | 2.99e-107 | 338 |
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 706 | 1069 | 3.12e-107 | 338 |
| MS.gene68826.t1 | AT2G01830 | 50.000 | 394 | 116 | 9 | 1 | 343 | 695 | 1058 | 3.23e-107 | 338 |
| MS.gene68826.t1 | AT5G35750 | 41.885 | 382 | 156 | 8 | 2 | 342 | 814 | 1170 | 2.63e-77 | 258 |
| MS.gene68826.t1 | AT1G27320 | 41.176 | 374 | 151 | 8 | 2 | 333 | 670 | 1016 | 3.82e-74 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCTTCACCTCAGTTAT+TGG | 0.154797 | 6.1:-80162227 | None:intergenic |
| TGAATTCCGTTTACCTATAT+TGG | 0.174752 | 6.1:+80163637 | MS.gene68826:CDS |
| TTGAAGCAACTCGTCGAATT+CGG | 0.272691 | 6.1:+80163558 | MS.gene68826:CDS |
| TGAAGCAACTCGTCGAATTC+GGG | 0.321951 | 6.1:+80163559 | MS.gene68826:CDS |
| GGCTTTAAACCCTCTAAAAC+TGG | 0.340964 | 6.1:-80162270 | None:intergenic |
| ATGTGCTAAACTCCGCATTC+TGG | 0.359839 | 6.1:-80164880 | None:intergenic |
| CAAGTTTGATGCTTGCTTCA+AGG | 0.362213 | 6.1:+80163127 | MS.gene68826:CDS |
| GGATATTCAAATGCAAGAAA+TGG | 0.373656 | 6.1:+80163148 | MS.gene68826:CDS |
| TTTAAAGCCGTTGTGGTTGA+TGG | 0.373929 | 6.1:+80162284 | MS.gene68826:CDS |
| AGTCGCAAACGCCATCAATA+AGG | 0.379169 | 6.1:+80162367 | MS.gene68826:CDS |
| GATCTTCAGTGTGCGGCAAC+TGG | 0.379917 | 6.1:+80162747 | MS.gene68826:CDS |
| CTAGTCACAGCAGCTCTAAC+AGG | 0.385909 | 6.1:-80162311 | None:intergenic |
| TCTGCTGTCATGGCCAATAT+AGG | 0.397938 | 6.1:-80163650 | None:intergenic |
| TGAACAATTCCTTCCTCAAA+AGG | 0.408776 | 6.1:-80163734 | None:intergenic |
| TAAGTGCCTAGCTGAACTAA+TGG | 0.413074 | 6.1:+80162121 | MS.gene68826:CDS |
| AACTATGGTGGTACCGGCAT+TGG | 0.427397 | 6.1:+80162086 | MS.gene68826:CDS |
| AGCTCGACTTCTAGAAACTA+TGG | 0.431958 | 6.1:+80162071 | MS.gene68826:CDS |
| CAAAGAAACAGCCTTATTGA+TGG | 0.453163 | 6.1:-80162378 | None:intergenic |
| CATACGGGGACTGGCTTCTA+CGG | 0.455310 | 6.1:+80164900 | MS.gene68826:CDS |
| TCCAATAACTGAGGTGAAGA+AGG | 0.463469 | 6.1:+80162226 | MS.gene68826:CDS |
| AATAAGGCTGTTTCTTTGTG+TGG | 0.465190 | 6.1:+80162383 | MS.gene68826:CDS |
| AGATACCATTTGAAGAGACT+TGG | 0.482768 | 6.1:+80162332 | MS.gene68826:CDS |
| CATGGGTTTGTGGAGAGGAC+GGG | 0.486989 | 6.1:+80162725 | MS.gene68826:CDS |
| GAGCTATCTGCCTTCACAAA+AGG | 0.487515 | 6.1:-80162053 | None:intergenic |
| AAAATCCGCGGTAAATGAAA+AGG | 0.489053 | 6.1:-80162186 | None:intergenic |
| ATAAGGCTGTTTCTTTGTGT+GGG | 0.489234 | 6.1:+80162384 | MS.gene68826:CDS |
| GTATCCCAAGTCTCTTCAAA+TGG | 0.499078 | 6.1:-80162337 | None:intergenic |
| AAGTGCCTAGCTGAACTAAT+GGG | 0.499182 | 6.1:+80162122 | MS.gene68826:CDS |
| TCATGGCCAATATAGGTAAA+CGG | 0.499301 | 6.1:-80163643 | None:intergenic |
| GTCAAATAAACTTTATAAGC+CGG | 0.499856 | 6.1:+80162147 | MS.gene68826:CDS |
| TTAAAGCCGTTGTGGTTGAT+GGG | 0.511535 | 6.1:+80162285 | MS.gene68826:CDS |
| AATGCGGAGTTTAGCACATA+CGG | 0.514945 | 6.1:+80164884 | MS.gene68826:CDS |
| TTTATAAGCCGGCCGCAGGT+TGG | 0.515174 | 6.1:+80162158 | MS.gene68826:CDS |
| AGTTTAGCACATACGGGGAC+TGG | 0.518029 | 6.1:+80164891 | MS.gene68826:CDS |
| TCATGGGTTTGTGGAGAGGA+CGG | 0.522273 | 6.1:+80162724 | MS.gene68826:CDS |
| ATGAAGAGTGTTTGAAATGT+GGG | 0.523905 | 6.1:+80163690 | MS.gene68826:CDS |
| AACACTCTTCATATGTAGCA+TGG | 0.525664 | 6.1:-80163679 | None:intergenic |
| GAAGCCACTGAGAACTAGTA+TGG | 0.525821 | 6.1:+80162883 | MS.gene68826:CDS |
| GATGGAGAGGACGGCGAATG+AGG | 0.528403 | 6.1:+80163583 | MS.gene68826:CDS |
| ATGGATTACATCTGCTGTCA+TGG | 0.530208 | 6.1:-80163660 | None:intergenic |
| AACTCGTCGAATTCGGGAGA+TGG | 0.539466 | 6.1:+80163565 | MS.gene68826:CDS |
| AAACTTTATAAGCCGGCCGC+AGG | 0.541024 | 6.1:+80162154 | MS.gene68826:CDS |
| TGTTTGAAATGTGGGATGGA+TGG | 0.544805 | 6.1:+80163698 | MS.gene68826:CDS |
| CTGTTCCCAAAACTTGCTGA+AGG | 0.546763 | 6.1:-80162916 | None:intergenic |
| GAGAAAGATTCATGGGTTTG+TGG | 0.557247 | 6.1:+80162715 | MS.gene68826:intron |
| AGATTCATGGGTTTGTGGAG+AGG | 0.561266 | 6.1:+80162720 | MS.gene68826:CDS |
| GTAGCAAGAAGGATCATTTG+AGG | 0.561281 | 6.1:-80162797 | None:intergenic |
| GATACCATTTGAAGAGACTT+GGG | 0.564437 | 6.1:+80162333 | MS.gene68826:CDS |
| ATACGGGGACTGGCTTCTAC+GGG | 0.565321 | 6.1:+80164901 | MS.gene68826:CDS |
| ACTGATACTCAAACCAATGC+CGG | 0.566091 | 6.1:-80162099 | None:intergenic |
| TATGAAGAGTGTTTGAAATG+TGG | 0.566182 | 6.1:+80163689 | MS.gene68826:CDS |
| TCTAGAAACTATGGTGGTAC+CGG | 0.567665 | 6.1:+80162080 | MS.gene68826:CDS |
| TACTAATATTCGTAGCAAGA+AGG | 0.570683 | 6.1:-80162808 | None:intergenic |
| TAGAGGGTTTAAAGCCGTTG+TGG | 0.575392 | 6.1:+80162277 | MS.gene68826:CDS |
| ATGCGGAGTTTAGCACATAC+GGG | 0.576002 | 6.1:+80164885 | MS.gene68826:CDS |
| ATGTCAATGGAAGTGACTGC+TGG | 0.584114 | 6.1:+80163026 | MS.gene68826:CDS |
| CGAATGGTGAATGTAGTGAA+AGG | 0.586436 | 6.1:+80163609 | MS.gene68826:CDS |
| TATCATTGAATTTATCAGCA+AGG | 0.588047 | 6.1:-80163298 | None:intergenic |
| AGGTACTTCCAACCTGCGGC+CGG | 0.588430 | 6.1:-80162166 | None:intergenic |
| CCACTGAGAACTAGTATGGT+GGG | 0.590558 | 6.1:+80162887 | MS.gene68826:CDS |
| AGCAAGCATCAAACTTGTGA+GGG | 0.592861 | 6.1:-80163121 | None:intergenic |
| GTCGAATTCGGGAGATGGAG+AGG | 0.601823 | 6.1:+80163570 | MS.gene68826:CDS |
| GCCACTGAGAACTAGTATGG+TGG | 0.607785 | 6.1:+80162886 | MS.gene68826:CDS |
| TTAAACCCTCTAAAACTGGA+TGG | 0.609462 | 6.1:-80162266 | None:intergenic |
| AAGCAAGCATCAAACTTGTG+AGG | 0.613257 | 6.1:-80163122 | None:intergenic |
| CACTGTATCACTAAAACATG+CGG | 0.616849 | 6.1:-80162855 | None:intergenic |
| AGAGTGTTTGAAATGTGGGA+TGG | 0.624246 | 6.1:+80163694 | MS.gene68826:CDS |
| AATTCGGGAGATGGAGAGGA+CGG | 0.638289 | 6.1:+80163574 | MS.gene68826:CDS |
| AAAATGGTGCTTCCAGCACA+GGG | 0.643044 | 6.1:+80162408 | MS.gene68826:CDS |
| GACCGCCCATTAGTTCAGCT+AGG | 0.643366 | 6.1:-80162127 | None:intergenic |
| CGTAAATATTCCAAAATCCG+CGG | 0.647005 | 6.1:-80162198 | None:intergenic |
| TGCGGCAACTGGAAACAGAA+CGG | 0.653414 | 6.1:+80162758 | MS.gene68826:CDS |
| ACGGCGAATGAGGAGACGAA+TGG | 0.653590 | 6.1:+80163593 | MS.gene68826:CDS |
| AGGACGGGATCTTCAGTGTG+CGG | 0.664290 | 6.1:+80162740 | MS.gene68826:CDS |
| GATGTGAAGTGTGCAGACAG+CGG | 0.669637 | 6.1:+80163071 | MS.gene68826:CDS |
| TCGACTTCTAGAAACTATGG+TGG | 0.684605 | 6.1:+80162074 | MS.gene68826:CDS |
| TACGAAGAATCCAATAACTG+AGG | 0.689869 | 6.1:+80162217 | MS.gene68826:CDS |
| TGTCAGGGAAACATTGCTGA+AGG | 0.696155 | 6.1:+80164831 | MS.gene68826:intron |
| TGCCTAGCTGAACTAATGGG+CGG | 0.697388 | 6.1:+80162125 | MS.gene68826:CDS |
| AGGTTTCCCATCAACCACAA+CGG | 0.697501 | 6.1:-80162291 | None:intergenic |
| TGCGGAGTTTAGCACATACG+GGG | 0.722432 | 6.1:+80164886 | MS.gene68826:CDS |
| CCCACCATACTAGTTCTCAG+TGG | 0.729319 | 6.1:-80162887 | None:intergenic |
| GAAAAGGTACTTCCAACCTG+CGG | 0.747596 | 6.1:-80162170 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATTTTTTTTTTTT+TGG | + | chr6.1:80163193-80163212 | MS.gene68826:intron | 0.0% |
| !! | ATGATTTATAAAAAACAATA+TGG | - | chr6.1:80163517-80163536 | None:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | chr6.1:80162655-80162674 | MS.gene68826:intron | 10.0% |
| !! | TGATTTATAAAAAACAATAT+GGG | - | chr6.1:80163516-80163535 | None:intergenic | 10.0% |
| !! | ATCACTATCATTTATTAAAA+TGG | - | chr6.1:80164758-80164777 | None:intergenic | 15.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | chr6.1:80162472-80162491 | MS.gene68826:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+TGG | - | chr6.1:80162449-80162468 | None:intergenic | 20.0% |
| !! | GTGTTTAGTATAAAAATCTT+GGG | + | chr6.1:80164500-80164519 | MS.gene68826:intron | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | chr6.1:80162699-80162718 | None:intergenic | 20.0% |
| !! | TGTGTTTAGTATAAAAATCT+TGG | + | chr6.1:80164499-80164518 | MS.gene68826:intron | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | chr6.1:80162700-80162719 | None:intergenic | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | chr6.1:80164190-80164209 | MS.gene68826:intron | 20.0% |
| !!! | GCTCTAACTTTTTTATATAT+AGG | - | chr6.1:80164249-80164268 | None:intergenic | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | chr6.1:80163897-80163916 | MS.gene68826:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | chr6.1:80163468-80163487 | None:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | - | chr6.1:80163862-80163881 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | chr6.1:80163467-80163486 | None:intergenic | 25.0% |
| ! | GTCAAATAAACTTTATAAGC+CGG | + | chr6.1:80162147-80162166 | MS.gene68826:CDS | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | chr6.1:80163301-80163320 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | chr6.1:80162661-80162680 | MS.gene68826:intron | 25.0% |
| ! | TGTTTCATATGAGTAATTAG+AGG | + | chr6.1:80164468-80164487 | MS.gene68826:intron | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | chr6.1:80163534-80163553 | MS.gene68826:intron | 25.0% |
| !! | CTGAATGTTGACATTTTTAT+TGG | + | chr6.1:80164808-80164827 | MS.gene68826:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | chr6.1:80163809-80163828 | MS.gene68826:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | chr6.1:80162708-80162727 | MS.gene68826:intron | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | chr6.1:80162707-80162726 | MS.gene68826:intron | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | - | chr6.1:80163245-80163264 | None:intergenic | 25.0% |
| !!! | TGATGTTTCTTTTTTATGTC+TGG | + | chr6.1:80164652-80164671 | MS.gene68826:intron | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | chr6.1:80163777-80163796 | MS.gene68826:intron | 25.0% |
| ATAGTCCTTGATTTCTTGAA+GGG | + | chr6.1:80164782-80164801 | MS.gene68826:intron | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | + | chr6.1:80163148-80163167 | MS.gene68826:CDS | 30.0% | |
| GTTGAAGAAAACTTTGTACT+TGG | + | chr6.1:80164611-80164630 | MS.gene68826:intron | 30.0% | |
| TAATAAGCTCTTCTGTTGTT+GGG | - | chr6.1:80164380-80164399 | None:intergenic | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | - | chr6.1:80162811-80162830 | None:intergenic | 30.0% | |
| TATAGTCCTTGATTTCTTGA+AGG | + | chr6.1:80164781-80164800 | MS.gene68826:intron | 30.0% | |
| TATGAGTAATTAGAGGATGA+AGG | + | chr6.1:80164475-80164494 | MS.gene68826:intron | 30.0% | |
| TGAATTCCGTTTACCTATAT+TGG | + | chr6.1:80163637-80163656 | MS.gene68826:CDS | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | chr6.1:80162665-80162684 | MS.gene68826:intron | 30.0% | |
| TTAATAAGCTCTTCTGTTGT+TGG | - | chr6.1:80164381-80164400 | None:intergenic | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | chr6.1:80163812-80163831 | MS.gene68826:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | chr6.1:80163721-80163740 | MS.gene68826:CDS | 30.0% |
| !! | ACTTTTAACCGACTTTTTGA+TGG | + | chr6.1:80164857-80164876 | MS.gene68826:CDS | 30.0% |
| !! | ATGAAGAGTGTTTGAAATGT+GGG | + | chr6.1:80163690-80163709 | MS.gene68826:CDS | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | + | chr6.1:80163013-80163032 | MS.gene68826:intron | 30.0% |
| !! | TATGAAGAGTGTTTGAAATG+TGG | + | chr6.1:80163689-80163708 | MS.gene68826:CDS | 30.0% |
| !! | TTGACATTTTTATTGGTGTC+AGG | + | chr6.1:80164815-80164834 | MS.gene68826:intron | 30.0% |
| !!! | TGACATTTTTATTGGTGTCA+GGG | + | chr6.1:80164816-80164835 | MS.gene68826:intron | 30.0% |
| AAAATCCGCGGTAAATGAAA+AGG | - | chr6.1:80162189-80162208 | None:intergenic | 35.0% | |
| AACACTCTTCATATGTAGCA+TGG | - | chr6.1:80163682-80163701 | None:intergenic | 35.0% | |
| AGATACCATTTGAAGAGACT+TGG | + | chr6.1:80162332-80162351 | MS.gene68826:CDS | 35.0% | |
| AGCTGAAACGTAGTGAAATA+AGG | - | chr6.1:80164422-80164441 | None:intergenic | 35.0% | |
| AGTTACCCTTCAAGAAATCA+AGG | - | chr6.1:80164790-80164809 | None:intergenic | 35.0% | |
| AGTTTGCATTGTCTTCTCAT+AGG | + | chr6.1:80164725-80164744 | MS.gene68826:intron | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | chr6.1:80162423-80162442 | None:intergenic | 35.0% | |
| CACTGTATCACTAAAACATG+CGG | - | chr6.1:80162858-80162877 | None:intergenic | 35.0% | |
| CGTAAATATTCCAAAATCCG+CGG | - | chr6.1:80162201-80162220 | None:intergenic | 35.0% | |
| GATACCATTTGAAGAGACTT+GGG | + | chr6.1:80162333-80162352 | MS.gene68826:CDS | 35.0% | |
| GGGAGCTTAAATTTGTAAAC+AGG | - | chr6.1:80164351-80164370 | None:intergenic | 35.0% | |
| GTTTCTTTGTGTGGGAAAAA+TGG | + | chr6.1:80162392-80162411 | MS.gene68826:CDS | 35.0% | |
| GTTTGCATTGTCTTCTCATA+GGG | + | chr6.1:80164726-80164745 | MS.gene68826:intron | 35.0% | |
| TACGAAGAATCCAATAACTG+AGG | + | chr6.1:80162217-80162236 | MS.gene68826:CDS | 35.0% | |
| TCATGGCCAATATAGGTAAA+CGG | - | chr6.1:80163646-80163665 | None:intergenic | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | chr6.1:80163737-80163756 | None:intergenic | 35.0% | |
| TGCTGTAATGATACTGTACT+TGG | + | chr6.1:80164131-80164150 | MS.gene68826:intron | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | chr6.1:80162997-80163016 | None:intergenic | 35.0% |
| ! | AACACTAATAGTGGCATTGA+CGG | - | chr6.1:80164568-80164587 | None:intergenic | 35.0% |
| ! | AAGTACCTTTTCATTTACCG+CGG | + | chr6.1:80162181-80162200 | MS.gene68826:CDS | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | chr6.1:80162517-80162536 | MS.gene68826:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | chr6.1:80163000-80163019 | MS.gene68826:intron | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | chr6.1:80164186-80164205 | None:intergenic | 35.0% |
| ! | TCTTGTTTCCTAAGACTCTT+AGG | + | chr6.1:80164065-80164084 | MS.gene68826:intron | 35.0% |
| ! | TGTGTCGATAACACTAATAG+TGG | - | chr6.1:80164577-80164596 | None:intergenic | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | chr6.1:80162616-80162635 | MS.gene68826:intron | 35.0% |
| ! | TTTTCATTTACCGCGGATTT+TGG | + | chr6.1:80162188-80162207 | MS.gene68826:CDS | 35.0% |
| !! | AATAAGGCTGTTTCTTTGTG+TGG | + | chr6.1:80162383-80162402 | MS.gene68826:CDS | 35.0% |
| !! | ATAAGGCTGTTTCTTTGTGT+GGG | + | chr6.1:80162384-80162403 | MS.gene68826:CDS | 35.0% |
| !! | CAAAGAAACAGCCTTATTGA+TGG | - | chr6.1:80162381-80162400 | None:intergenic | 35.0% |
| !! | TTAAACCCTCTAAAACTGGA+TGG | - | chr6.1:80162269-80162288 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | chr6.1:80163736-80163755 | MS.gene68826:CDS | 35.0% |
| !!! | ATCTACCATCCAGTTTTAGA+GGG | + | chr6.1:80162261-80162280 | MS.gene68826:CDS | 35.0% |
| !!! | TAAGAGGTTTTGGTTTGGTT+TGG | + | chr6.1:80164089-80164108 | MS.gene68826:intron | 35.0% |
| AAAGTTAGAGCTAGAGCTAC+TGG | + | chr6.1:80164258-80164277 | MS.gene68826:intron | 40.0% | |
| AAGCAAGCATCAAACTTGTG+AGG | - | chr6.1:80163125-80163144 | None:intergenic | 40.0% | |
| AAGTGCCTAGCTGAACTAAT+GGG | + | chr6.1:80162122-80162141 | MS.gene68826:CDS | 40.0% | |
| AAGTTAGAGCTAGAGCTACT+GGG | + | chr6.1:80164259-80164278 | MS.gene68826:intron | 40.0% | |
| AATGCGGAGTTTAGCACATA+CGG | + | chr6.1:80164884-80164903 | MS.gene68826:CDS | 40.0% | |
| ACCTTCTTCACCTCAGTTAT+TGG | - | chr6.1:80162230-80162249 | None:intergenic | 40.0% | |
| ACTGATACTCAAACCAATGC+CGG | - | chr6.1:80162102-80162121 | None:intergenic | 40.0% | |
| AGAAGACAATGCAAACTGCA+GGG | - | chr6.1:80164722-80164741 | None:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | - | chr6.1:80163124-80163143 | None:intergenic | 40.0% | |
| AGCTTATTAAAGCGACTGCA+GGG | + | chr6.1:80164391-80164410 | MS.gene68826:intron | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | - | chr6.1:80162971-80162990 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | + | chr6.1:80163127-80163146 | MS.gene68826:CDS | 40.0% | |
| CATTCTGGCCATCAAAAAGT+CGG | - | chr6.1:80164868-80164887 | None:intergenic | 40.0% | |
| CCAAGCATGATGAATGATTG+AGG | - | chr6.1:80164025-80164044 | None:intergenic | 40.0% | |
| CCTCAATCATTCATCATGCT+TGG | + | chr6.1:80164022-80164041 | MS.gene68826:intron | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | chr6.1:80163609-80163628 | MS.gene68826:CDS | 40.0% | |
| CGATCATGTGTGACTTTAGA+TGG | - | chr6.1:80162519-80162538 | None:intergenic | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | chr6.1:80162715-80162734 | MS.gene68826:intron | 40.0% | |
| GAGAACCCAACAACCTAAAA+GGG | - | chr6.1:80164302-80164321 | None:intergenic | 40.0% | |
| GTAGCAAGAAGGATCATTTG+AGG | - | chr6.1:80162800-80162819 | None:intergenic | 40.0% | |
| GTATCCCAAGTCTCTTCAAA+TGG | - | chr6.1:80162340-80162359 | None:intergenic | 40.0% | |
| TAAGTGCCTAGCTGAACTAA+TGG | + | chr6.1:80162121-80162140 | MS.gene68826:CDS | 40.0% | |
| TCCAATAACTGAGGTGAAGA+AGG | + | chr6.1:80162226-80162245 | MS.gene68826:CDS | 40.0% | |
| TCTAGAAACTATGGTGGTAC+CGG | + | chr6.1:80162080-80162099 | MS.gene68826:CDS | 40.0% | |
| TGAGAACCCAACAACCTAAA+AGG | - | chr6.1:80164303-80164322 | None:intergenic | 40.0% | |
| TTAAAGCCGTTGTGGTTGAT+GGG | + | chr6.1:80162285-80162304 | MS.gene68826:CDS | 40.0% | |
| TTACGTGCATTCAACTTACG+TGG | - | chr6.1:80163325-80163344 | None:intergenic | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | chr6.1:80163558-80163577 | MS.gene68826:CDS | 40.0% | |
| TTGTTGGGTTCTCATCATCT+CGG | + | chr6.1:80164309-80164328 | MS.gene68826:intron | 40.0% | |
| ! | AATGCACGTAACTTGCATGT+TGG | + | chr6.1:80163334-80163353 | MS.gene68826:intron | 40.0% |
| ! | ACTCTTAGGCTAAGAGGTTT+TGG | + | chr6.1:80164079-80164098 | MS.gene68826:intron | 40.0% |
| ! | AGAGTGTTTGAAATGTGGGA+TGG | + | chr6.1:80163694-80163713 | MS.gene68826:CDS | 40.0% |
| ! | AGCTCGACTTCTAGAAACTA+TGG | + | chr6.1:80162071-80162090 | MS.gene68826:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | - | chr6.1:80163054-80163073 | None:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | chr6.1:80163663-80163682 | None:intergenic | 40.0% |
| ! | TCGACTTCTAGAAACTATGG+TGG | + | chr6.1:80162074-80162093 | MS.gene68826:CDS | 40.0% |
| ! | TGTTTGAAATGTGGGATGGA+TGG | + | chr6.1:80163698-80163717 | MS.gene68826:CDS | 40.0% |
| ! | TTTAAAGCCGTTGTGGTTGA+TGG | + | chr6.1:80162284-80162303 | MS.gene68826:CDS | 40.0% |
| !! | ACTTTTTGATGGCCAGAATG+CGG | + | chr6.1:80164868-80164887 | MS.gene68826:CDS | 40.0% |
| !! | GATCTACCATCCAGTTTTAG+AGG | + | chr6.1:80162260-80162279 | MS.gene68826:CDS | 40.0% |
| !! | GGCTTTAAACCCTCTAAAAC+TGG | - | chr6.1:80162273-80162292 | None:intergenic | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | chr6.1:80163725-80163744 | MS.gene68826:CDS | 40.0% |
| !!! | TAGGCTAAGAGGTTTTGGTT+TGG | + | chr6.1:80164084-80164103 | MS.gene68826:intron | 40.0% |
| AAAAATGGTGCTTCCAGCAC+AGG | + | chr6.1:80162407-80162426 | MS.gene68826:CDS | 45.0% | |
| AAAATGGTGCTTCCAGCACA+GGG | + | chr6.1:80162408-80162427 | MS.gene68826:CDS | 45.0% | |
| AACAACCTAAAAGGGCCAGT+CGG | - | chr6.1:80164294-80164313 | None:intergenic | 45.0% | |
| AAGCTCTTCTGTTGTTGGGT+TGG | - | chr6.1:80164376-80164395 | None:intergenic | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | chr6.1:80162720-80162739 | MS.gene68826:CDS | 45.0% | |
| AGCTCTTCTGTTGTTGGGTT+GGG | - | chr6.1:80164375-80164394 | None:intergenic | 45.0% | |
| AGGTTTCCCATCAACCACAA+CGG | - | chr6.1:80162294-80162313 | None:intergenic | 45.0% | |
| AGTCGCAAACGCCATCAATA+AGG | + | chr6.1:80162367-80162386 | MS.gene68826:CDS | 45.0% | |
| ATGCGGAGTTTAGCACATAC+GGG | + | chr6.1:80164885-80164904 | MS.gene68826:CDS | 45.0% | |
| ATGTCAATGGAAGTGACTGC+TGG | + | chr6.1:80163026-80163045 | MS.gene68826:CDS | 45.0% | |
| ATGTGCTAAACTCCGCATTC+TGG | - | chr6.1:80164883-80164902 | None:intergenic | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | + | chr6.1:80162887-80162906 | MS.gene68826:CDS | 45.0% | |
| CCTAAGACTCTTAGGCTAAG+AGG | + | chr6.1:80164073-80164092 | MS.gene68826:intron | 45.0% | |
| CCTCTTAGCCTAAGAGTCTT+AGG | - | chr6.1:80164076-80164095 | None:intergenic | 45.0% | |
| GAAGACAATGCAAACTGCAG+GGG | - | chr6.1:80164721-80164740 | None:intergenic | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | + | chr6.1:80162883-80162902 | MS.gene68826:CDS | 45.0% | |
| GAGAAGACAATGCAAACTGC+AGG | - | chr6.1:80164723-80164742 | None:intergenic | 45.0% | |
| GAGCTATCTGCCTTCACAAA+AGG | - | chr6.1:80162056-80162075 | None:intergenic | 45.0% | |
| GAGCTTATTAAAGCGACTGC+AGG | + | chr6.1:80164390-80164409 | MS.gene68826:intron | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | chr6.1:80163653-80163672 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | chr6.1:80163559-80163578 | MS.gene68826:CDS | 45.0% | |
| TGTCAGGGAAACATTGCTGA+AGG | + | chr6.1:80164831-80164850 | MS.gene68826:intron | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | + | chr6.1:80162910-80162929 | MS.gene68826:intron | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | + | chr6.1:80163049-80163068 | MS.gene68826:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | + | chr6.1:80162911-80162930 | MS.gene68826:intron | 45.0% |
| ! | TAGAGGGTTTAAAGCCGTTG+TGG | + | chr6.1:80162277-80162296 | MS.gene68826:CDS | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | + | chr6.1:80162983-80163002 | MS.gene68826:intron | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | - | chr6.1:80162919-80162938 | None:intergenic | 45.0% |
| !! | GAAAAGGTACTTCCAACCTG+CGG | - | chr6.1:80162173-80162192 | None:intergenic | 45.0% |
| !!! | ACTGGCCCTTTTAGGTTGTT+GGG | + | chr6.1:80164294-80164313 | MS.gene68826:intron | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | + | chr6.1:80162917-80162936 | MS.gene68826:intron | 45.0% |
| AAACTTTATAAGCCGGCCGC+AGG | + | chr6.1:80162154-80162173 | MS.gene68826:CDS | 50.0% | |
| AACAGGCAAGAAGAGACAGC+CGG | + | chr6.1:80162934-80162953 | MS.gene68826:intron | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | chr6.1:80163565-80163584 | MS.gene68826:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | chr6.1:80163574-80163593 | MS.gene68826:CDS | 50.0% | |
| ACTGGGAAAGTTGTTCCGAC+TGG | + | chr6.1:80164276-80164295 | MS.gene68826:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.1:80163933-80163952 | MS.gene68826:intron | 50.0% | |
| AGTTTAGCACATACGGGGAC+TGG | + | chr6.1:80164891-80164910 | MS.gene68826:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr6.1:80163932-80163951 | MS.gene68826:intron | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | + | chr6.1:80163071-80163090 | MS.gene68826:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | + | chr6.1:80162886-80162905 | MS.gene68826:CDS | 50.0% | |
| GCTGGCGCCTTGAAAAACTT+TGG | + | chr6.1:80163044-80163063 | MS.gene68826:CDS | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | chr6.1:80162724-80162743 | MS.gene68826:CDS | 50.0% | |
| TGCCTAGCTGAACTAATGGG+CGG | + | chr6.1:80162125-80162144 | MS.gene68826:CDS | 50.0% | |
| TGCGGAGTTTAGCACATACG+GGG | + | chr6.1:80164886-80164905 | MS.gene68826:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | chr6.1:80162758-80162777 | MS.gene68826:CDS | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | chr6.1:80162956-80162975 | None:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | - | chr6.1:80162890-80162909 | None:intergenic | 50.0% |
| ! | CTAGTCACAGCAGCTCTAAC+AGG | - | chr6.1:80162314-80162333 | None:intergenic | 50.0% |
| !! | AACTATGGTGGTACCGGCAT+TGG | + | chr6.1:80162086-80162105 | MS.gene68826:CDS | 50.0% |
| !! | CTTCTGTTGTTGGGTTGGGA+GGG | - | chr6.1:80164371-80164390 | None:intergenic | 50.0% |
| !! | TCTTCTGTTGTTGGGTTGGG+AGG | - | chr6.1:80164372-80164391 | None:intergenic | 50.0% |
| !! | TTGTTCCGACTGGCCCTTTT+AGG | + | chr6.1:80164286-80164305 | MS.gene68826:intron | 50.0% |
| !!! | GACTGGCCCTTTTAGGTTGT+TGG | + | chr6.1:80164293-80164312 | MS.gene68826:intron | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | chr6.1:80162935-80162954 | MS.gene68826:intron | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | chr6.1:80163593-80163612 | MS.gene68826:CDS | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | + | chr6.1:80163969-80163988 | MS.gene68826:intron | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | chr6.1:80162740-80162759 | MS.gene68826:CDS | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | chr6.1:80162725-80162744 | MS.gene68826:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | chr6.1:80162953-80162972 | MS.gene68826:intron | 55.0% | |
| GACCGCCCATTAGTTCAGCT+AGG | - | chr6.1:80162130-80162149 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGGGA+GGG | + | chr6.1:80163970-80163989 | MS.gene68826:intron | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | chr6.1:80162747-80162766 | MS.gene68826:CDS | 55.0% | |
| GGGTTCTCATCATCTCGGTG+TGG | + | chr6.1:80164314-80164333 | MS.gene68826:intron | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | chr6.1:80163570-80163589 | MS.gene68826:CDS | 55.0% | |
| TTTATAAGCCGGCCGCAGGT+TGG | + | chr6.1:80162158-80162177 | MS.gene68826:CDS | 55.0% | |
| !! | ATACGGGGACTGGCTTCTAC+GGG | + | chr6.1:80164901-80164920 | MS.gene68826:CDS | 55.0% |
| !! | CATACGGGGACTGGCTTCTA+CGG | + | chr6.1:80164900-80164919 | MS.gene68826:CDS | 55.0% |
| AGAGAGAGAGAGAGGGAGGG+AGG | + | chr6.1:80163973-80163992 | MS.gene68826:intron | 60.0% | |
| AGGTACTTCCAACCTGCGGC+CGG | - | chr6.1:80162169-80162188 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGGGAGGGA+GGG | + | chr6.1:80163974-80163993 | MS.gene68826:intron | 60.0% | |
| GATGGAGAGGACGGCGAATG+AGG | + | chr6.1:80163583-80163602 | MS.gene68826:CDS | 60.0% | |
| AGAGAGAGAGGGAGGGAGGG+AGG | + | chr6.1:80163977-80163996 | MS.gene68826:intron | 65.0% | |
| GAGAGAGAGGGAGGGAGGGA+GGG | + | chr6.1:80163978-80163997 | MS.gene68826:intron | 65.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | chr6.1:80163981-80164000 | MS.gene68826:intron | 70.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | chr6.1:80163982-80164001 | MS.gene68826:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 80162050 | 80164926 | 80162050 | ID=MS.gene68826 |
| chr6.1 | mRNA | 80162050 | 80164926 | 80162050 | ID=MS.gene68826.t1;Parent=MS.gene68826 |
| chr6.1 | exon | 80162050 | 80162429 | 80162050 | ID=MS.gene68826.t1.exon1;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80162050 | 80162429 | 80162050 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| chr6.1 | exon | 80162718 | 80162925 | 80162718 | ID=MS.gene68826.t1.exon2;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80162718 | 80162925 | 80162718 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| chr6.1 | exon | 80163020 | 80163174 | 80163020 | ID=MS.gene68826.t1.exon3;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80163020 | 80163174 | 80163020 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| chr6.1 | exon | 80163257 | 80163325 | 80163257 | ID=MS.gene68826.t1.exon4;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80163257 | 80163325 | 80163257 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| chr6.1 | exon | 80163556 | 80163757 | 80163556 | ID=MS.gene68826.t1.exon5;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80163556 | 80163757 | 80163556 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| chr6.1 | exon | 80164837 | 80164926 | 80164837 | ID=MS.gene68826.t1.exon6;Parent=MS.gene68826.t1 |
| chr6.1 | CDS | 80164837 | 80164926 | 80164837 | ID=cds.MS.gene68826.t1;Parent=MS.gene68826.t1 |
| Gene Sequence |
| Protein sequence |
