Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071342.t1 | XP_003595777.1 | 98.5 | 137 | 2 | 0 | 1 | 137 | 297 | 433 | 1.60E-69 | 271.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071342.t1 | Q08A72 | 50.8 | 128 | 61 | 1 | 1 | 128 | 303 | 428 | 1.4e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071342.t1 | G7IJ02 | 98.5 | 137 | 2 | 0 | 1 | 137 | 297 | 433 | 1.1e-69 | 271.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene071342 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene071342 | 0.820208 | 7.75E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene071342 | 0.869337 | 3.34E-66 | -1.69E-46 |
| MS.gene049343 | MS.gene071342 | 0.849585 | 2.94E-60 | -1.69E-46 |
| MS.gene049368 | MS.gene071342 | 0.808524 | 2.97E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene071342 | 0.824593 | 7.42E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene071342 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene071342 | 0.814094 | 1.83E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene071342 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene049666 | MS.gene071342 | 0.821518 | 3.87E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene071342 | 0.8211 | 4.83E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene071342 | 0.81612 | 6.51E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene071342 | 0.806755 | 7.05E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene071342 | 0.823063 | 1.69E-53 | -1.69E-46 |
| MS.gene049977 | MS.gene071342 | 0.809582 | 1.76E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene071342 | 0.81759 | 3.05E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene071342 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene050029 | MS.gene071342 | 0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene050031 | MS.gene071342 | 0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene071342 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene050156 | MS.gene071342 | 0.825668 | 4.14E-54 | -1.69E-46 |
| MS.gene050273 | MS.gene071342 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene071342 | 0.807461 | 5.00E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene071342 | 0.818727 | 1.69E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene071342 | 0.820056 | 8.39E-53 | -1.69E-46 |
| MS.gene050759 | MS.gene071342 | 0.826813 | 2.21E-54 | -1.69E-46 |
| MS.gene050905 | MS.gene071342 | -0.840131 | 1.05E-57 | -1.69E-46 |
| MS.gene050962 | MS.gene071342 | 0.819156 | 1.35E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene071342 | 0.806044 | 9.96E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene071342 | 0.826572 | 2.52E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene071342 | 0.839125 | 1.91E-57 | -1.69E-46 |
| MS.gene051594 | MS.gene071342 | 0.860827 | 1.57E-63 | -1.69E-46 |
| MS.gene051719 | MS.gene071342 | 0.805325 | 1.41E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene071342 | 0.804146 | 2.48E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene071342 | 0.829193 | 5.90E-55 | -1.69E-46 |
| MS.gene051957 | MS.gene071342 | 0.834232 | 3.38E-56 | -1.69E-46 |
| MS.gene052108 | MS.gene071342 | 0.800271 | 1.56E-48 | -1.69E-46 |
| MS.gene052208 | MS.gene071342 | 0.817499 | 3.20E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene071342 | -0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene071342 | 0.801678 | 8.04E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene071342 | 0.824914 | 6.23E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene071342 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene071342 | 0.872184 | 3.86E-67 | -1.69E-46 |
| MS.gene052534 | MS.gene071342 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene071342 | 0.800655 | 1.30E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene071342 | 0.851317 | 9.61E-61 | -1.69E-46 |
| MS.gene052584 | MS.gene071342 | 0.855643 | 5.50E-62 | -1.69E-46 |
| MS.gene052586 | MS.gene071342 | 0.81744 | 3.29E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene071342 | 0.807125 | 5.89E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene071342 | 0.845751 | 3.34E-59 | -1.69E-46 |
| MS.gene052863 | MS.gene071342 | 0.819879 | 9.21E-53 | -1.69E-46 |
| MS.gene052867 | MS.gene071342 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene071342 | 0.846248 | 2.45E-59 | -1.69E-46 |
| MS.gene053008 | MS.gene071342 | 0.806317 | 8.72E-50 | -1.69E-46 |
| MS.gene053082 | MS.gene071342 | 0.810268 | 1.25E-50 | -1.69E-46 |
| MS.gene05308 | MS.gene071342 | 0.822118 | 2.81E-53 | -1.69E-46 |
| MS.gene053145 | MS.gene071342 | 0.80452 | 2.08E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene071342 | 0.862726 | 4.13E-64 | -1.69E-46 |
| MS.gene05350 | MS.gene071342 | 0.806679 | 7.32E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene071342 | 0.810101 | 1.36E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene071342 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene071342 | 0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene071342 | 0.838068 | 3.58E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene071342 | 0.842868 | 1.99E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene071342 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene071342 | 0.840127 | 1.05E-57 | -1.69E-46 |
| MS.gene054291 | MS.gene071342 | -0.827235 | 1.75E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene071342 | 0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene071342 | 0.829317 | 5.51E-55 | -1.69E-46 |
| MS.gene05458 | MS.gene071342 | 0.815595 | 8.53E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene071342 | 0.884998 | 1.19E-71 | -1.69E-46 |
| MS.gene054775 | MS.gene071342 | 0.83092 | 2.24E-55 | -1.69E-46 |
| MS.gene054991 | MS.gene071342 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene071342 | 0.804685 | 1.92E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene071342 | 0.817479 | 3.23E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene071342 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene071342 | 0.807836 | 4.16E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene071342 | 0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene071342 | 0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene071342 | 0.806951 | 6.41E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene071342 | 0.81189 | 5.58E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene071342 | 0.826438 | 2.71E-54 | -1.69E-46 |
| MS.gene055623 | MS.gene071342 | 0.812873 | 3.41E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene071342 | 0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene071342 | 0.842937 | 1.91E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene071342 | 0.88289 | 7.13E-71 | -1.69E-46 |
| MS.gene055841 | MS.gene071342 | 0.843946 | 1.02E-58 | -1.69E-46 |
| MS.gene055926 | MS.gene071342 | 0.807402 | 5.15E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene071342 | 0.82585 | 3.74E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene071342 | 0.843016 | 1.82E-58 | -1.69E-46 |
| MS.gene056173 | MS.gene071342 | 0.831272 | 1.83E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene071342 | 0.871018 | 9.41E-67 | -1.69E-46 |
| MS.gene056215 | MS.gene071342 | 0.804044 | 2.61E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene071342 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene071342 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene071342 | 0.849471 | 3.17E-60 | -1.69E-46 |
| MS.gene056373 | MS.gene071342 | 0.819471 | 1.14E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene071342 | 0.83197 | 1.23E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene071342 | 0.800389 | 1.47E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene071342 | 0.828385 | 9.26E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene071342 | 0.804894 | 1.73E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene071342 | 0.852586 | 4.19E-61 | -1.69E-46 |
| MS.gene056779 | MS.gene071342 | 0.80022 | 1.60E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene071342 | 0.841034 | 6.07E-58 | -1.69E-46 |
| MS.gene05690 | MS.gene071342 | 0.827567 | 1.46E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene071342 | 0.818543 | 1.86E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene071342 | 0.818643 | 1.76E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene071342 | 0.863207 | 2.93E-64 | -1.69E-46 |
| MS.gene057314 | MS.gene071342 | 0.80149 | 8.79E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene071342 | 0.827567 | 1.46E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene071342 | 0.856152 | 3.90E-62 | -1.69E-46 |
| MS.gene057598 | MS.gene071342 | 0.831077 | 2.05E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene071342 | 0.856796 | 2.53E-62 | -1.69E-46 |
| MS.gene057855 | MS.gene071342 | 0.827202 | 1.78E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene071342 | 0.803505 | 3.38E-49 | -1.69E-46 |
| MS.gene057921 | MS.gene071342 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene071342 | 0.82589 | 3.66E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene071342 | 0.841249 | 5.33E-58 | -1.69E-46 |
| MS.gene058010 | MS.gene071342 | 0.804372 | 2.23E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene071342 | 0.843902 | 1.05E-58 | -1.69E-46 |
| MS.gene058146 | MS.gene071342 | 0.805996 | 1.02E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene071342 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene058294 | MS.gene071342 | 0.812992 | 3.21E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene071342 | 0.811739 | 6.02E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene071342 | 0.859232 | 4.77E-63 | -1.69E-46 |
| MS.gene058636 | MS.gene071342 | 0.809573 | 1.77E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene071342 | 0.84588 | 3.08E-59 | -1.69E-46 |
| MS.gene058979 | MS.gene071342 | 0.849195 | 3.78E-60 | -1.69E-46 |
| MS.gene059272 | MS.gene071342 | 0.827776 | 1.30E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene071342 | 0.841307 | 5.14E-58 | -1.69E-46 |
| MS.gene059584 | MS.gene071342 | 0.813167 | 2.94E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene071342 | 0.819534 | 1.10E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene071342 | 0.832332 | 1.00E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene071342 | -0.808674 | 2.76E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene071342 | 0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene071342 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene060258 | MS.gene071342 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene071342 | 0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene071342 | 0.829757 | 4.31E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene071342 | 0.804477 | 2.12E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene071342 | 0.836048 | 1.18E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene071342 | 0.824245 | 8.96E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene071342 | 0.840586 | 7.95E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene071342 | 0.80493 | 1.71E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene071342 | -0.838138 | 3.44E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene071342 | 0.823818 | 1.13E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene071342 | 0.818795 | 1.63E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene071342 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene071342 | -0.812193 | 4.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071342.t1 | MTR_2g060720 | 98.540 | 137 | 2 | 0 | 1 | 137 | 297 | 433 | 7.00e-93 | 275 |
| MS.gene071342.t1 | MTR_2g060720 | 91.176 | 136 | 12 | 0 | 1 | 136 | 297 | 432 | 2.04e-84 | 254 |
| MS.gene071342.t1 | MTR_4g022860 | 73.571 | 140 | 33 | 3 | 1 | 137 | 293 | 431 | 1.80e-50 | 166 |
| MS.gene071342.t1 | MTR_1g053905 | 60.465 | 129 | 46 | 3 | 1 | 125 | 198 | 325 | 3.74e-45 | 150 |
| MS.gene071342.t1 | MTR_4g100880 | 45.255 | 137 | 47 | 3 | 1 | 137 | 175 | 283 | 1.08e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071342.t1 | AT2G44440 | 50.781 | 128 | 61 | 1 | 1 | 128 | 303 | 428 | 4.11e-38 | 134 |
| MS.gene071342.t1 | AT5G13020 | 52.381 | 126 | 53 | 3 | 1 | 123 | 273 | 394 | 1.86e-33 | 120 |
| MS.gene071342.t1 | AT5G06780 | 49.219 | 128 | 56 | 3 | 1 | 125 | 179 | 300 | 7.08e-31 | 112 |
| MS.gene071342.t1 | AT5G06780 | 49.219 | 128 | 56 | 3 | 1 | 125 | 186 | 307 | 7.55e-31 | 112 |
| MS.gene071342.t1 | AT3G12140 | 53.077 | 130 | 54 | 4 | 1 | 125 | 187 | 314 | 1.63e-24 | 96.3 |
| MS.gene071342.t1 | AT3G12140 | 53.077 | 130 | 54 | 4 | 1 | 125 | 187 | 314 | 1.63e-24 | 96.3 |
| MS.gene071342.t1 | AT3G12140 | 53.846 | 130 | 47 | 6 | 1 | 122 | 187 | 311 | 3.16e-23 | 93.6 |
Find 0 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAATTAAAATGCTA+TGG | + | 16771:2007-2026 | MS.gene071342:intron | 10.0% |
| !!! | ATGGAAAATATTTAAATTTT+TGG | + | 16771:1652-1671 | MS.gene071342:intron | 10.0% |
| !!! | TGGAAAATATTTAAATTTTT+GGG | + | 16771:1653-1672 | MS.gene071342:intron | 10.0% |
| !!! | GCATTTTAATTTTAATTTAG+AGG | - | 16771:2005-2024 | MS.gene071342:intergenic | 15.0% |
| !! | AATACTGCAAAAATGTAAAT+AGG | - | 16771:1954-1973 | MS.gene071342:intergenic | 20.0% |
| !! | ATAGACAAAAGTGAAAAATA+TGG | - | 16771:2379-2398 | MS.gene071342:intergenic | 20.0% |
| !! | TTTAAAAAAGTAGTGAATAC+TGG | - | 16771:2426-2445 | MS.gene071342:intergenic | 20.0% |
| !!! | TAAATAGAAGTACAATAGTT+TGG | + | 16771:2199-2218 | MS.gene071342:intron | 20.0% |
| ! | AATTAAAATGCTATGGAGTA+TGG | + | 16771:2014-2033 | MS.gene071342:intron | 25.0% |
| ! | ATATTAAATCGTAGGATGAT+TGG | - | 16771:2339-2358 | MS.gene071342:intergenic | 25.0% |
| ! | ATCAATTATATTCAGTGAAG+TGG | + | 16771:2457-2476 | MS.gene071342:intron | 25.0% |
| ! | ATCTTATTCTTTATGCAGAT+GGG | + | 16771:2541-2560 | MS.gene071342:intron | 25.0% |
| ! | CAAGAAAATATTGAAGGTAA+AGG | + | 16771:1740-1759 | MS.gene071342:intron | 25.0% |
| ! | CAATTTAATGAATTAACTGC+AGG | + | 16771:1843-1862 | MS.gene071342:intron | 25.0% |
| ! | TATCTTATTCTTTATGCAGA+TGG | + | 16771:2540-2559 | MS.gene071342:intron | 25.0% |
| ! | TGCAAGAACATATAAATTAG+CGG | - | 16771:1806-1825 | MS.gene071342:intergenic | 25.0% |
| ! | TTGATTTAACATGTGAGAAA+TGG | - | 16771:2575-2594 | MS.gene071342:intergenic | 25.0% |
| ! | TTTCTCACATGTTAAATCAA+TGG | + | 16771:2575-2594 | MS.gene071342:CDS | 25.0% |
| ! | TTTGTCTATTTAAACAACCT+TGG | + | 16771:2390-2409 | MS.gene071342:intron | 25.0% |
| !! | CTTTACCTTCAATATTTTCT+TGG | - | 16771:1742-1761 | MS.gene071342:intergenic | 25.0% |
| !! | GAGATTGTTTAATCTTTTCA+TGG | + | 16771:1633-1652 | MS.gene071342:intron | 25.0% |
| !! | TACAATAGTTTGGAATAACA+AGG | + | 16771:2209-2228 | MS.gene071342:intron | 25.0% |
| !!! | TGATGGCAATAAATCTTTTT+TGG | - | 16771:1507-1526 | MS.gene071342:intergenic | 25.0% |
| ACGATTTAATATACCAAGCA+GGG | + | 16771:2347-2366 | MS.gene071342:intron | 30.0% | |
| GAAAGCCAAGAAAATATTGA+AGG | + | 16771:1734-1753 | MS.gene071342:CDS | 30.0% | |
| GTTAAAGAGGTAACTGAAAA+CGG | + | 16771:1587-1606 | MS.gene071342:intron | 30.0% | |
| TACGATTTAATATACCAAGC+AGG | + | 16771:2346-2365 | MS.gene071342:intron | 30.0% | |
| TAGTGAATACTGGATACTTT+AGG | - | 16771:2416-2435 | MS.gene071342:intergenic | 30.0% | |
| TCTTATTCTTTATGCAGATG+GGG | + | 16771:2542-2561 | MS.gene071342:intron | 30.0% | |
| TGCTTGGTATATTAAATCGT+AGG | - | 16771:2347-2366 | MS.gene071342:intergenic | 30.0% | |
| TTCAAAGTGAACTAGCTAAA+TGG | - | 16771:2131-2150 | MS.gene071342:intergenic | 30.0% | |
| TTCTCAATTTCATGTACATC+AGG | - | 16771:1717-1736 | MS.gene071342:intergenic | 30.0% | |
| TTTAGCTAGTTCACTTTGAA+AGG | + | 16771:2131-2150 | MS.gene071342:intron | 30.0% | |
| TTTATACACAGAATCAAGTG+TGG | - | 16771:2505-2524 | MS.gene071342:intergenic | 30.0% | |
| !! | GATTTTCACTGATTATTGCT+TGG | + | 16771:2236-2255 | MS.gene071342:intron | 30.0% |
| !!! | AAATTTTTGGGTAACTTGTC+AGG | + | 16771:1665-1684 | MS.gene071342:intron | 30.0% |
| CAAATGAGTTGCAAGTGATA+CGG | + | 16771:2083-2102 | MS.gene071342:intron | 35.0% | |
| CAGTAAAATAAATGGCAGAC+TGG | - | 16771:1779-1798 | MS.gene071342:intergenic | 35.0% | |
| CGATTTAATATACCAAGCAG+GGG | + | 16771:2348-2367 | MS.gene071342:intron | 35.0% | |
| CTTATTCTTTATGCAGATGG+GGG | + | 16771:2543-2562 | MS.gene071342:intron | 35.0% | |
| GATTTATTGCCATCACAGAA+TGG | + | 16771:1512-1531 | MS.gene071342:CDS | 35.0% | |
| AATCGTAGGATGATTGGAAG+TGG | - | 16771:2333-2352 | None:intergenic | 40.0% | |
| ACAGAATGGAATCGGGAAAA+AGG | + | 16771:1526-1545 | MS.gene071342:CDS | 40.0% | |
| ATACTGGATACTTTAGGCCA+AGG | - | 16771:2410-2429 | MS.gene071342:intergenic | 40.0% | |
| ATCGTAGGATGATTGGAAGT+GGG | - | 16771:2332-2351 | MS.gene071342:intergenic | 40.0% | |
| CACAGACACACTAGTTAAAG+AGG | + | 16771:1574-1593 | MS.gene071342:CDS | 40.0% | |
| CCTACCCATTGAATATCTTC+CGG | - | 16771:1368-1387 | MS.gene071342:intergenic | 40.0% | |
| CGGAAGATATTCAATGGGTA+GGG | + | 16771:1366-1385 | MS.gene071342:CDS | 40.0% | |
| CTCTCCGGAAGATATTCAAT+GGG | + | 16771:1361-1380 | MS.gene071342:CDS | 40.0% | |
| CTCTTATCGATGCAATTGCA+AGG | + | 16771:1878-1897 | MS.gene071342:CDS | 40.0% | |
| GCGGCTAGCAGTAAAATAAA+TGG | - | 16771:1787-1806 | MS.gene071342:intergenic | 40.0% | |
| GGAAGATATTCAATGGGTAG+GGG | + | 16771:1367-1386 | MS.gene071342:CDS | 40.0% | |
| TCTCTCCGGAAGATATTCAA+TGG | + | 16771:1360-1379 | MS.gene071342:CDS | 40.0% | |
| TTGCCATCACAGAATGGAAT+CGG | + | 16771:1518-1537 | MS.gene071342:CDS | 40.0% | |
| ! | CTGGAATCAACCATCGTTTT+GGG | + | 16771:1396-1415 | MS.gene071342:CDS | 40.0% |
| ! | GATCTTTCTGATGGCGATAA+TGG | + | 16771:1907-1926 | MS.gene071342:CDS | 40.0% |
| ! | TGGAATCAACCATCGTTTTG+GGG | + | 16771:1397-1416 | MS.gene071342:CDS | 40.0% |
| !!! | TTTTTGGGTAACTTGTCAGG+TGG | + | 16771:1668-1687 | MS.gene071342:intron | 40.0% |
| AATATGGAATCACCCCTGCT+TGG | - | 16771:2363-2382 | None:intergenic | 45.0% | |
| AGATATTCAATGGGTAGGGG+AGG | + | 16771:1370-1389 | MS.gene071342:CDS | 45.0% | |
| AGGCTTGCAGATCTTTCTGA+TGG | + | 16771:1898-1917 | MS.gene071342:CDS | 45.0% | |
| ATTCTTTATGCAGATGGGGG+CGG | + | 16771:2546-2565 | MS.gene071342:intron | 45.0% | |
| CCGGAAGATATTCAATGGGT+AGG | + | 16771:1365-1384 | MS.gene071342:CDS | 45.0% | |
| GAGATCCATTGTTCCATCAC+TGG | - | 16771:2483-2502 | MS.gene071342:intergenic | 45.0% | |
| GATTATGGCCACTGTTTCCA+CGG | - | 16771:2296-2315 | MS.gene071342:intergenic | 45.0% | |
| TCGTAGGATGATTGGAAGTG+GGG | - | 16771:2331-2350 | MS.gene071342:intergenic | 45.0% | |
| TGCCATCACAGAATGGAATC+GGG | + | 16771:1519-1538 | MS.gene071342:CDS | 45.0% | |
| TTCATCTTACTTCCATGCCG+TGG | + | 16771:2276-2295 | MS.gene071342:intron | 45.0% | |
| TTCCCGATTCCATTCTGTGA+TGG | - | 16771:1524-1543 | MS.gene071342:intergenic | 45.0% | |
| ! | CCAAAACGATGGTTGATTCC+AGG | - | 16771:1398-1417 | MS.gene071342:intergenic | 45.0% |
| ! | CCTGGAATCAACCATCGTTT+TGG | + | 16771:1395-1414 | MS.gene071342:CDS | 45.0% |
| ! | GGAATCAACCATCGTTTTGG+GGG | + | 16771:1398-1417 | MS.gene071342:CDS | 45.0% |
| ! | GGGTGTAGTGGAACAGATTA+TGG | - | 16771:2311-2330 | MS.gene071342:intergenic | 45.0% |
| ! | GGTAACTTGTCAGGTGGAAA+GGG | + | 16771:1674-1693 | MS.gene071342:intron | 45.0% |
| TGATTGGAAGTGGGGTGTAG+TGG | - | 16771:2323-2342 | MS.gene071342:intergenic | 50.0% | |
| TGGAATCGGGAAAAAGGCTC+TGG | + | 16771:1532-1551 | MS.gene071342:CDS | 50.0% | |
| TTCAGTGAAGTGGCCAGTGA+TGG | + | 16771:2467-2486 | MS.gene071342:intron | 50.0% | |
| ! | AAGAGGTAGGGGAGGTACAA+AGG | + | 16771:1475-1494 | MS.gene071342:CDS | 50.0% |
| ! | AGAGGTAGGGGAGGTACAAA+GGG | + | 16771:1476-1495 | MS.gene071342:CDS | 50.0% |
| ! | AGTGGCCAGTGATGGAACAA+TGG | + | 16771:2475-2494 | MS.gene071342:intron | 50.0% |
| ! | CGTGGGTTGAATAGGTCTGT+AGG | + | 16771:1428-1447 | MS.gene071342:CDS | 50.0% |
| ! | GATCTGGTCGTGGGTTGAAT+AGG | + | 16771:1420-1439 | MS.gene071342:CDS | 50.0% |
| ! | GGGTAACTTGTCAGGTGGAA+AGG | + | 16771:1673-1692 | MS.gene071342:intron | 50.0% |
| !!! | AACCATCGTTTTGGGGGATC+TGG | + | 16771:1404-1423 | MS.gene071342:CDS | 50.0% |
| AGTGTTCCAGGAGCTGGAAG+AGG | + | 16771:1458-1477 | MS.gene071342:CDS | 55.0% | |
| CTTCCATGCCGTGGAAACAG+TGG | + | 16771:2285-2304 | MS.gene071342:intron | 55.0% | |
| GACCAGATCCCCCAAAACGA+TGG | - | 16771:1409-1428 | MS.gene071342:intergenic | 55.0% | |
| GTAGGTCGCGATAGTGTTCC+AGG | + | 16771:1446-1465 | MS.gene071342:CDS | 55.0% | |
| TCCAGGAGCTGGAAGAGGTA+GGG | + | 16771:1463-1482 | MS.gene071342:CDS | 55.0% | |
| TTCCAGGAGCTGGAAGAGGT+AGG | + | 16771:1462-1481 | MS.gene071342:CDS | 55.0% | |
| ! | GAGGTAGGGGAGGTACAAAG+GGG | + | 16771:1477-1496 | MS.gene071342:CDS | 55.0% |
| !!! | GTTTTGGGGGATCTGGTCGT+GGG | + | 16771:1411-1430 | MS.gene071342:CDS | 55.0% |
| CAATGGGTAGGGGAGGAACC+TGG | + | 16771:1377-1396 | MS.gene071342:CDS | 60.0% | |
| CCAGGAGCTGGAAGAGGTAG+GGG | + | 16771:1464-1483 | MS.gene071342:CDS | 60.0% | |
| CGCGATAGTGTTCCAGGAGC+TGG | + | 16771:1452-1471 | MS.gene071342:CDS | 60.0% | |
| TGGCCACTGTTTCCACGGCA+TGG | - | 16771:2291-2310 | MS.gene071342:intergenic | 60.0% | |
| !!! | CGTTTTGGGGGATCTGGTCG+TGG | + | 16771:1410-1429 | MS.gene071342:CDS | 60.0% |
| CCCCTACCTCTTCCAGCTCC+TGG | - | 16771:1467-1486 | MS.gene071342:intergenic | 65.0% | |
| GGAGCTGGAAGAGGTAGGGG+AGG | + | 16771:1467-1486 | MS.gene071342:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16771 | gene | 1359 | 2602 | 1359 | ID=MS.gene071342 |
| 16771 | mRNA | 1359 | 2602 | 1359 | ID=MS.gene071342.t1;Parent=MS.gene071342 |
| 16771 | exon | 1359 | 1595 | 1359 | ID=MS.gene071342.t1.exon1;Parent=MS.gene071342.t1 |
| 16771 | CDS | 1359 | 1595 | 1359 | ID=cds.MS.gene071342.t1;Parent=MS.gene071342.t1 |
| 16771 | exon | 1687 | 1755 | 1687 | ID=MS.gene071342.t1.exon2;Parent=MS.gene071342.t1 |
| 16771 | CDS | 1687 | 1755 | 1687 | ID=cds.MS.gene071342.t1;Parent=MS.gene071342.t1 |
| 16771 | exon | 1865 | 1928 | 1865 | ID=MS.gene071342.t1.exon3;Parent=MS.gene071342.t1 |
| 16771 | CDS | 1865 | 1928 | 1865 | ID=cds.MS.gene071342.t1;Parent=MS.gene071342.t1 |
| 16771 | exon | 2559 | 2602 | 2559 | ID=MS.gene071342.t1.exon4;Parent=MS.gene071342.t1 |
| 16771 | CDS | 2559 | 2602 | 2559 | ID=cds.MS.gene071342.t1;Parent=MS.gene071342.t1 |
| Gene Sequence |
| Protein sequence |
