Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84994.t1 | XP_028800998.1 | 54.9 | 348 | 94 | 4 | 1 | 285 | 1 | 348 | 7.30E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84994.t1 | A0A1U8KII2 | 50.7 | 337 | 101 | 3 | 1 | 272 | 1 | 337 | 6.6e-80 | 307.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049203 | MS.gene84994 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene84994 | 0.856435 | 3.22E-62 | -1.69E-46 |
| MS.gene049435 | MS.gene84994 | 0.809991 | 1.44E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene84994 | 0.858156 | 1.00E-62 | -1.69E-46 |
| MS.gene050029 | MS.gene84994 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene050043 | MS.gene84994 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene84994 | 0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene84994 | 0.811738 | 6.03E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene84994 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene84994 | 0.804755 | 1.85E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene84994 | 0.833488 | 5.18E-56 | -1.69E-46 |
| MS.gene051247 | MS.gene84994 | 0.801253 | 9.82E-49 | -1.69E-46 |
| MS.gene05125 | MS.gene84994 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene84994 | 0.831127 | 1.99E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene84994 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene84994 | 0.810651 | 1.04E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene84994 | 0.809805 | 1.58E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene84994 | 0.809259 | 2.07E-50 | -1.69E-46 |
| MS.gene052037 | MS.gene84994 | 0.845294 | 4.44E-59 | -1.69E-46 |
| MS.gene052239 | MS.gene84994 | -0.818783 | 1.64E-52 | -1.69E-46 |
| MS.gene052447 | MS.gene84994 | 0.872577 | 2.86E-67 | -1.69E-46 |
| MS.gene052448 | MS.gene84994 | 0.817307 | 3.53E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene84994 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene84994 | 0.817126 | 3.88E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene84994 | 0.825912 | 3.62E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene84994 | 0.826935 | 2.06E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene84994 | 0.823311 | 1.48E-53 | -1.69E-46 |
| MS.gene053154 | MS.gene84994 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene053164 | MS.gene84994 | 0.801543 | 8.57E-49 | -1.69E-46 |
| MS.gene053201 | MS.gene84994 | 0.820858 | 5.49E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene84994 | 0.851746 | 7.26E-61 | -1.69E-46 |
| MS.gene053883 | MS.gene84994 | 0.823122 | 1.64E-53 | -1.69E-46 |
| MS.gene05414 | MS.gene84994 | 0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene84994 | 0.844904 | 5.66E-59 | -1.69E-46 |
| MS.gene05423 | MS.gene84994 | 0.841098 | 5.84E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene84994 | -0.841664 | 4.14E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene84994 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene84994 | 0.835252 | 1.87E-56 | -1.69E-46 |
| MS.gene054661 | MS.gene84994 | 0.808344 | 3.24E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene84994 | 0.815514 | 8.89E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene84994 | 0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene84994 | 0.840374 | 9.03E-58 | -1.69E-46 |
| MS.gene055724 | MS.gene84994 | 0.806036 | 9.99E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene84994 | 0.840902 | 6.57E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene84994 | 0.821079 | 4.89E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene84994 | 0.86242 | 5.13E-64 | -1.69E-46 |
| MS.gene056272 | MS.gene84994 | 0.822391 | 2.43E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene84994 | 0.800902 | 1.16E-48 | -1.69E-46 |
| MS.gene056366 | MS.gene84994 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene056373 | MS.gene84994 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene84994 | 0.808232 | 3.43E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene84994 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene84994 | 0.806484 | 8.04E-50 | -1.69E-46 |
| MS.gene056873 | MS.gene84994 | 0.805934 | 1.05E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene84994 | 0.814173 | 1.76E-51 | -1.69E-46 |
| MS.gene057021 | MS.gene84994 | 0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene84994 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene84994 | 0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene84994 | 0.824544 | 7.62E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene84994 | 0.828532 | 8.53E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene84994 | 0.801321 | 9.51E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene84994 | 0.807664 | 4.53E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene84994 | 0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene84994 | 0.824199 | 9.19E-54 | -1.69E-46 |
| MS.gene058294 | MS.gene84994 | 0.835555 | 1.57E-56 | -1.69E-46 |
| MS.gene058515 | MS.gene84994 | 0.822037 | 2.93E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene84994 | 0.834898 | 2.30E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene84994 | 0.829516 | 4.93E-55 | -1.69E-46 |
| MS.gene059015 | MS.gene84994 | 0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene84994 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene059272 | MS.gene84994 | 0.864672 | 1.03E-64 | -1.69E-46 |
| MS.gene059276 | MS.gene84994 | 0.829366 | 5.36E-55 | -1.69E-46 |
| MS.gene059458 | MS.gene84994 | 0.833435 | 5.34E-56 | -1.69E-46 |
| MS.gene059459 | MS.gene84994 | 0.841769 | 3.89E-58 | -1.69E-46 |
| MS.gene059460 | MS.gene84994 | 0.833317 | 5.72E-56 | -1.69E-46 |
| MS.gene059584 | MS.gene84994 | 0.838976 | 2.09E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene84994 | 0.835194 | 1.93E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene84994 | 0.82881 | 7.31E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene84994 | 0.852649 | 4.02E-61 | -1.69E-46 |
| MS.gene060135 | MS.gene84994 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene84994 | 0.828747 | 7.57E-55 | -1.69E-46 |
| MS.gene060257 | MS.gene84994 | 0.809485 | 1.85E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene84994 | 0.829175 | 5.96E-55 | -1.69E-46 |
| MS.gene060521 | MS.gene84994 | 0.828979 | 6.65E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene84994 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene060634 | MS.gene84994 | -0.838283 | 3.15E-57 | -1.69E-46 |
| MS.gene060918 | MS.gene84994 | 0.807628 | 4.61E-50 | -1.69E-46 |
| MS.gene060919 | MS.gene84994 | 0.800752 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84994.t1 | MTR_7g062720 | 65.152 | 132 | 46 | 0 | 1 | 132 | 1 | 132 | 1.42e-60 | 190 |
| MS.gene84994.t1 | MTR_5g061150 | 62.992 | 127 | 47 | 0 | 20 | 146 | 10 | 136 | 5.12e-50 | 162 |
| MS.gene84994.t1 | MTR_1g036690 | 58.537 | 82 | 27 | 3 | 205 | 285 | 5 | 80 | 1.87e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGCTCTTAATATTTC+TGG | 0.080746 | 5.2:+17690221 | MS.gene84994:CDS |
| TATTGTTGGGGTTCTATTTC+TGG | 0.109431 | 5.2:-17691276 | None:intergenic |
| TTCGGCATTTAAATGAATTT+TGG | 0.166319 | 5.2:-17690273 | None:intergenic |
| ATGGGTACATTTACGTTTAC+AGG | 0.235783 | 5.2:+17690496 | MS.gene84994:CDS |
| CCAACAATCACTTCAAAATA+AGG | 0.249520 | 5.2:+17691114 | MS.gene84994:CDS |
| AAATTGTCCCAAAGATCTTT+TGG | 0.267031 | 5.2:-17690419 | None:intergenic |
| TATTTCTGGAAATAATTATC+TGG | 0.282933 | 5.2:+17690235 | MS.gene84994:CDS |
| TAGAAGATCCAAAAGATCTT+TGG | 0.283634 | 5.2:+17690411 | MS.gene84994:CDS |
| TAAAGATCAACAAGATGTTT+TGG | 0.343855 | 5.2:-17691091 | None:intergenic |
| CTGGAAATAATTATCTGGCT+TGG | 0.347827 | 5.2:+17690240 | MS.gene84994:CDS |
| TGGAAATAATTATCTGGCTT+GGG | 0.361577 | 5.2:+17690241 | MS.gene84994:CDS |
| TGAAGATGATTATGGTAATA+TGG | 0.367220 | 5.2:+17691174 | MS.gene84994:CDS |
| GAAAATGATGAAGATGATTA+TGG | 0.394855 | 5.2:+17691166 | MS.gene84994:CDS |
| TTTGGGACAATTTAAAAGAA+AGG | 0.395342 | 5.2:+17690429 | MS.gene84994:CDS |
| AGAAGATCCAAAAGATCTTT+GGG | 0.400056 | 5.2:+17690412 | MS.gene84994:CDS |
| ACCCATTCGTTACGAGCATT+AGG | 0.408672 | 5.2:-17690479 | None:intergenic |
| AGATGATCAATCATTCCTTC+AGG | 0.429528 | 5.2:-17691235 | None:intergenic |
| CCTTCGTCACCACCTTCATA+AGG | 0.433246 | 5.2:+17690364 | MS.gene84994:CDS |
| CACTTCAAAATAAGGACAAA+AGG | 0.441641 | 5.2:+17691122 | MS.gene84994:CDS |
| GTTGTGGAGGCAAAGGTCAT+TGG | 0.462627 | 5.2:+17691050 | MS.gene84994:CDS |
| TATAGTATCTCCATGCCCTT+CGG | 0.465237 | 5.2:-17690291 | None:intergenic |
| TGAAACAACTGAACAACAAA+AGG | 0.469111 | 5.2:+17690325 | MS.gene84994:CDS |
| AATGTTGTAAAGAATGATAT+TGG | 0.471241 | 5.2:+17690992 | MS.gene84994:CDS |
| TTTCGCGGTATTGTTGCTGC+AGG | 0.473557 | 5.2:-17690652 | None:intergenic |
| ATTGACACTGTGTGGAGAAA+AGG | 0.483584 | 5.2:+17690571 | MS.gene84994:CDS |
| TCCTAATGCTCGTAACGAAT+GGG | 0.483778 | 5.2:+17690478 | MS.gene84994:CDS |
| CATTTAAATGCCGAAGGGCA+TGG | 0.494088 | 5.2:+17690281 | MS.gene84994:CDS |
| AGAAATCAGCAGCATCTAAG+TGG | 0.497006 | 5.2:-17691204 | None:intergenic |
| TTCCTAATGCTCGTAACGAA+TGG | 0.505183 | 5.2:+17690477 | MS.gene84994:CDS |
| AACTGAACAACAAAAGGTTA+AGG | 0.508959 | 5.2:+17690331 | MS.gene84994:CDS |
| TACATTAGATGCATGAAAAG+TGG | 0.516304 | 5.2:-17690627 | None:intergenic |
| GAGAGTATTTGTTATCGTTG+TGG | 0.516470 | 5.2:+17691034 | MS.gene84994:CDS |
| CATGGAGATACTATAAAAGA+AGG | 0.519449 | 5.2:+17690299 | MS.gene84994:CDS |
| GATTTCTTTGCTGATCCTGA+AGG | 0.528813 | 5.2:+17691220 | MS.gene84994:CDS |
| ACTTCAAAATAAGGACAAAA+GGG | 0.529166 | 5.2:+17691123 | MS.gene84994:CDS |
| TGTTATCGTTGTGGAGGCAA+AGG | 0.533037 | 5.2:+17691043 | MS.gene84994:CDS |
| AAAATTCATTTAAATGCCGA+AGG | 0.537172 | 5.2:+17690275 | MS.gene84994:CDS |
| GGAATGATTGATCATCTCAC+TGG | 0.540490 | 5.2:+17691241 | MS.gene84994:CDS |
| TGCAGCAACAATACCGCGAA+AGG | 0.561209 | 5.2:+17690654 | MS.gene84994:CDS |
| GATGATTATGGTAATATGGA+AGG | 0.564748 | 5.2:+17691178 | MS.gene84994:CDS |
| AGTATTTGTTATCGTTGTGG+AGG | 0.570678 | 5.2:+17691037 | MS.gene84994:CDS |
| GTCTGTAATCGAATATAACT+CGG | 0.574961 | 5.2:+17690526 | MS.gene84994:CDS |
| ATTCGTTACGAGCATTAGGA+AGG | 0.589689 | 5.2:-17690475 | None:intergenic |
| CCTTATGAAGGTGGTGACGA+AGG | 0.598722 | 5.2:-17690364 | None:intergenic |
| GAAATCAGCAGCATCTAAGT+GGG | 0.621669 | 5.2:-17691203 | None:intergenic |
| AAATTCATTTAAATGCCGAA+GGG | 0.631745 | 5.2:+17690276 | MS.gene84994:CDS |
| GTGGTGACGAAGGAATATCA+TGG | 0.663314 | 5.2:-17690354 | None:intergenic |
| ACTTCTCTATTGACACTGTG+TGG | 0.668278 | 5.2:+17690563 | MS.gene84994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTGTAAAGAATGATAT+TGG | + | chr5.2:17690992-17691011 | MS.gene84994:CDS | 20.0% |
| !!! | TATTTCTGGAAATAATTATC+TGG | + | chr5.2:17690235-17690254 | MS.gene84994:CDS | 20.0% |
| ! | AAAATTCATTTAAATGCCGA+AGG | + | chr5.2:17690275-17690294 | MS.gene84994:CDS | 25.0% |
| ! | AAATTCATTTAAATGCCGAA+GGG | + | chr5.2:17690276-17690295 | MS.gene84994:CDS | 25.0% |
| ! | ACTTCAAAATAAGGACAAAA+GGG | + | chr5.2:17691123-17691142 | MS.gene84994:CDS | 25.0% |
| ! | GAAAATGATGAAGATGATTA+TGG | + | chr5.2:17691166-17691185 | MS.gene84994:CDS | 25.0% |
| ! | TGAAGATGATTATGGTAATA+TGG | + | chr5.2:17691174-17691193 | MS.gene84994:CDS | 25.0% |
| !! | TAAAGATCAACAAGATGTTT+TGG | - | chr5.2:17691094-17691113 | None:intergenic | 25.0% |
| !! | TTACAACATTTTTCATCTTC+TGG | - | chr5.2:17690982-17691001 | None:intergenic | 25.0% |
| !! | TTCGGCATTTAAATGAATTT+TGG | - | chr5.2:17690276-17690295 | None:intergenic | 25.0% |
| !! | TTTGGGACAATTTAAAAGAA+AGG | + | chr5.2:17690429-17690448 | MS.gene84994:CDS | 25.0% |
| !!! | CATTTTTTAGATCCTTATGA+AGG | - | chr5.2:17690379-17690398 | None:intergenic | 25.0% |
| !!! | GAGAAAATGTGTTTTTGTTT+TGG | - | chr5.2:17690958-17690977 | None:intergenic | 25.0% |
| !!! | GGTTTTAATAGTAATCACAA+TGG | + | chr5.2:17690908-17690927 | MS.gene84994:intron | 25.0% |
| !!! | TAAATGAATTTTGGCATCAA+GGG | - | chr5.2:17690267-17690286 | None:intergenic | 25.0% |
| !!! | TTAAATGAATTTTGGCATCA+AGG | - | chr5.2:17690268-17690287 | None:intergenic | 25.0% |
| AACTGAACAACAAAAGGTTA+AGG | + | chr5.2:17690331-17690350 | MS.gene84994:CDS | 30.0% | |
| AGAAGATCCAAAAGATCTTT+GGG | + | chr5.2:17690412-17690431 | MS.gene84994:CDS | 30.0% | |
| CACTTCAAAATAAGGACAAA+AGG | + | chr5.2:17691122-17691141 | MS.gene84994:CDS | 30.0% | |
| CATGGAGATACTATAAAAGA+AGG | + | chr5.2:17690299-17690318 | MS.gene84994:CDS | 30.0% | |
| CCAACAATCACTTCAAAATA+AGG | + | chr5.2:17691114-17691133 | MS.gene84994:CDS | 30.0% | |
| GATGATTATGGTAATATGGA+AGG | + | chr5.2:17691178-17691197 | MS.gene84994:CDS | 30.0% | |
| GTCTGTAATCGAATATAACT+CGG | + | chr5.2:17690526-17690545 | MS.gene84994:CDS | 30.0% | |
| TACATTAGATGCATGAAAAG+TGG | - | chr5.2:17690630-17690649 | None:intergenic | 30.0% | |
| TAGAAGATCCAAAAGATCTT+TGG | + | chr5.2:17690411-17690430 | MS.gene84994:CDS | 30.0% | |
| TGAAACAACTGAACAACAAA+AGG | + | chr5.2:17690325-17690344 | MS.gene84994:CDS | 30.0% | |
| ! | AAATTGTCCCAAAGATCTTT+TGG | - | chr5.2:17690422-17690441 | None:intergenic | 30.0% |
| ! | AAGATCTTTTGGATCTTCTA+TGG | - | chr5.2:17690411-17690430 | None:intergenic | 30.0% |
| ! | TGGAAATAATTATCTGGCTT+GGG | + | chr5.2:17690241-17690260 | MS.gene84994:CDS | 30.0% |
| ! | TTTGAGGCTCTTAATATTTC+TGG | + | chr5.2:17690221-17690240 | MS.gene84994:CDS | 30.0% |
| ! | TTTTTAGATCCTTATGAAGG+TGG | - | chr5.2:17690376-17690395 | None:intergenic | 30.0% |
| !!! | CCTTATTTTGAAGTGATTGT+TGG | - | chr5.2:17691117-17691136 | None:intergenic | 30.0% |
| !!! | TATTTTGTTTTGCCAGAAGT+AGG | - | chr5.2:17690712-17690731 | None:intergenic | 30.0% |
| AGATGATCAATCATTCCTTC+AGG | - | chr5.2:17691238-17691257 | None:intergenic | 35.0% | |
| ATGGGTACATTTACGTTTAC+AGG | + | chr5.2:17690496-17690515 | MS.gene84994:CDS | 35.0% | |
| CTGGAAATAATTATCTGGCT+TGG | + | chr5.2:17690240-17690259 | MS.gene84994:CDS | 35.0% | |
| CTTAATATCATGCCTACTTC+TGG | + | chr5.2:17690697-17690716 | MS.gene84994:intron | 35.0% | |
| ! | CCTCAAAATCAAGTTTTGCA+AGG | - | chr5.2:17690208-17690227 | None:intergenic | 35.0% |
| ! | CCTTGCAAAACTTGATTTTG+AGG | + | chr5.2:17690205-17690224 | MS.gene84994:CDS | 35.0% |
| ! | CTTTTGGATCTTCTATGGTA+AGG | - | chr5.2:17690406-17690425 | None:intergenic | 35.0% |
| !! | AGTATTTGTTATCGTTGTGG+AGG | + | chr5.2:17691037-17691056 | MS.gene84994:CDS | 35.0% |
| !! | GAGAGTATTTGTTATCGTTG+TGG | + | chr5.2:17691034-17691053 | MS.gene84994:CDS | 35.0% |
| !!! | ACCTTTTAAAACTCCTTTCG+CGG | - | chr5.2:17690670-17690689 | None:intergenic | 35.0% |
| ACGTGGTCGTGGTTATTTAA+GGG | + | chr5.2:17690874-17690893 | MS.gene84994:intron | 40.0% | |
| ACTTCTCTATTGACACTGTG+TGG | + | chr5.2:17690563-17690582 | MS.gene84994:CDS | 40.0% | |
| AGAAATCAGCAGCATCTAAG+TGG | - | chr5.2:17691207-17691226 | None:intergenic | 40.0% | |
| ATTCGTTACGAGCATTAGGA+AGG | - | chr5.2:17690478-17690497 | None:intergenic | 40.0% | |
| ATTGACACTGTGTGGAGAAA+AGG | + | chr5.2:17690571-17690590 | MS.gene84994:CDS | 40.0% | |
| GAAATCAGCAGCATCTAAGT+GGG | - | chr5.2:17691206-17691225 | None:intergenic | 40.0% | |
| GATTTCTTTGCTGATCCTGA+AGG | + | chr5.2:17691220-17691239 | MS.gene84994:CDS | 40.0% | |
| GCGTTGCTACATTCACTTAT+GGG | - | chr5.2:17690787-17690806 | None:intergenic | 40.0% | |
| GCTACATTCACTTATGGGAA+TGG | - | chr5.2:17690782-17690801 | None:intergenic | 40.0% | |
| GGAATGATTGATCATCTCAC+TGG | + | chr5.2:17691241-17691260 | MS.gene84994:CDS | 40.0% | |
| TATAGTATCTCCATGCCCTT+CGG | - | chr5.2:17690294-17690313 | None:intergenic | 40.0% | |
| TCCTAATGCTCGTAACGAAT+GGG | + | chr5.2:17690478-17690497 | MS.gene84994:CDS | 40.0% | |
| TGCGTTGCTACATTCACTTA+TGG | - | chr5.2:17690788-17690807 | None:intergenic | 40.0% | |
| TTCCTAATGCTCGTAACGAA+TGG | + | chr5.2:17690477-17690496 | MS.gene84994:CDS | 40.0% | |
| ! | GAAGGATGACAGTTTTCTGA+TGG | - | chr5.2:17690460-17690479 | None:intergenic | 40.0% |
| ! | TATTTAAGGGGACGTGGTTT+TGG | + | chr5.2:17690887-17690906 | MS.gene84994:intron | 40.0% |
| !!! | AAGATGTTTTGGTGTACGAC+AGG | - | chr5.2:17691083-17691102 | None:intergenic | 40.0% |
| !!! | ACCGCGAAAGGAGTTTTAAA+AGG | + | chr5.2:17690666-17690685 | MS.gene84994:CDS | 40.0% |
| ACCCATTCGTTACGAGCATT+AGG | - | chr5.2:17690482-17690501 | None:intergenic | 45.0% | |
| CATTTAAATGCCGAAGGGCA+TGG | + | chr5.2:17690281-17690300 | MS.gene84994:CDS | 45.0% | |
| CGTGGTCGTGGTTATTTAAG+GGG | + | chr5.2:17690875-17690894 | MS.gene84994:intron | 45.0% | |
| GACGTGGTCGTGGTTATTTA+AGG | + | chr5.2:17690873-17690892 | MS.gene84994:intron | 45.0% | |
| GATCACTATGGACAAACTCG+TGG | + | chr5.2:17690809-17690828 | MS.gene84994:intron | 45.0% | |
| GTAGCAACGCATGATCACTA+TGG | + | chr5.2:17690797-17690816 | MS.gene84994:intron | 45.0% | |
| TGTTATCGTTGTGGAGGCAA+AGG | + | chr5.2:17691043-17691062 | MS.gene84994:CDS | 45.0% | |
| ! | GTGGTGACGAAGGAATATCA+TGG | - | chr5.2:17690357-17690376 | None:intergenic | 45.0% |
| CCTTCGTCACCACCTTCATA+AGG | + | chr5.2:17690364-17690383 | MS.gene84994:CDS | 50.0% | |
| CGTGGTTATTTAAGGGGACG+TGG | + | chr5.2:17690881-17690900 | MS.gene84994:intron | 50.0% | |
| GTTGTGGAGGCAAAGGTCAT+TGG | + | chr5.2:17691050-17691069 | MS.gene84994:CDS | 50.0% | |
| TATGGACAAACTCGTGGTCG+TGG | + | chr5.2:17690815-17690834 | MS.gene84994:intron | 50.0% | |
| TGCAGCAACAATACCGCGAA+AGG | + | chr5.2:17690654-17690673 | MS.gene84994:CDS | 50.0% | |
| TTTCGCGGTATTGTTGCTGC+AGG | - | chr5.2:17690655-17690674 | None:intergenic | 50.0% | |
| ! | CCTTATGAAGGTGGTGACGA+AGG | - | chr5.2:17690367-17690386 | None:intergenic | 50.0% |
| AATCATGCAGCTCGTCCCAC+TGG | + | chr5.2:17690749-17690768 | MS.gene84994:intron | 55.0% | |
| CAAACTCGTGGTCGTGGTTG+TGG | + | chr5.2:17690821-17690840 | MS.gene84994:intron | 55.0% | |
| CACGTCCACGACCATAACCA+TGG | - | chr5.2:17690847-17690866 | None:intergenic | 55.0% | |
| CATGGTTATGGTCGTGGACG+TGG | + | chr5.2:17690845-17690864 | MS.gene84994:intron | 55.0% | |
| CGTGGTTGTGGCCATGGTTA+TGG | + | chr5.2:17690833-17690852 | MS.gene84994:intron | 55.0% | |
| TGTGGCCATGGTTATGGTCG+TGG | + | chr5.2:17690839-17690858 | MS.gene84994:intron | 55.0% | |
| ! | GGGAATGGAGCACTACCAGT+GGG | - | chr5.2:17690767-17690786 | None:intergenic | 55.0% |
| ! | TGGGAATGGAGCACTACCAG+TGG | - | chr5.2:17690768-17690787 | None:intergenic | 55.0% |
| TATGGTCGTGGACGTGGACG+TGG | + | chr5.2:17690851-17690870 | MS.gene84994:intron | 60.0% | |
| CGTGGTCGTGGTTGTGGCCA+TGG | + | chr5.2:17690827-17690846 | MS.gene84994:intron | 65.0% | |
| CGTGGACGTGGACGTGGACG+TGG | + | chr5.2:17690857-17690876 | MS.gene84994:intron | 70.0% | |
| CGTGGACGTGGACGTGGTCG+TGG | + | chr5.2:17690863-17690882 | MS.gene84994:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17690197 | 17691285 | 17690197 | ID=MS.gene84994 |
| chr5.2 | mRNA | 17690197 | 17691285 | 17690197 | ID=MS.gene84994.t1;Parent=MS.gene84994 |
| chr5.2 | exon | 17690197 | 17690687 | 17690197 | ID=MS.gene84994.t1.exon1;Parent=MS.gene84994.t1 |
| chr5.2 | CDS | 17690197 | 17690687 | 17690197 | ID=cds.MS.gene84994.t1;Parent=MS.gene84994.t1 |
| chr5.2 | exon | 17690919 | 17691285 | 17690919 | ID=MS.gene84994.t1.exon2;Parent=MS.gene84994.t1 |
| chr5.2 | CDS | 17690919 | 17691285 | 17690919 | ID=cds.MS.gene84994.t1;Parent=MS.gene84994.t1 |
| Gene Sequence |
| Protein sequence |
