Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47552.t1 | XP_025684871.1 | 61.2 | 436 | 153 | 2 | 65 | 485 | 365 | 799 | 2.80E-145 | 525.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47552.t1 | P08770 | 35.1 | 439 | 256 | 9 | 65 | 485 | 361 | 788 | 3.4e-59 | 230.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47552.t1 | A0A445D5G4 | 61.2 | 420 | 147 | 2 | 65 | 469 | 294 | 712 | 8.8e-141 | 510.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene47552 | 0.842906 | 1.94E-58 | -1.69E-46 |
| MS.gene049262 | MS.gene47552 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene47552 | 0.838513 | 2.75E-57 | -1.69E-46 |
| MS.gene049977 | MS.gene47552 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene050026 | MS.gene47552 | 0.827929 | 1.19E-54 | -1.69E-46 |
| MS.gene050029 | MS.gene47552 | 0.80191 | 7.21E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene47552 | 0.807574 | 4.73E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene47552 | 0.803332 | 3.67E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene47552 | 0.828893 | 6.98E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene47552 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene47552 | 0.834986 | 2.18E-56 | -1.69E-46 |
| MS.gene051575 | MS.gene47552 | 0.822048 | 2.92E-53 | -1.69E-46 |
| MS.gene051594 | MS.gene47552 | 0.831981 | 1.23E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene47552 | 0.806503 | 7.97E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene47552 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene47552 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene052447 | MS.gene47552 | 0.852796 | 3.65E-61 | -1.69E-46 |
| MS.gene052519 | MS.gene47552 | 0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene47552 | 0.820357 | 7.16E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene47552 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene47552 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene47552 | 0.802366 | 5.81E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene47552 | 0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene47552 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene47552 | 0.824476 | 7.91E-54 | -1.69E-46 |
| MS.gene053883 | MS.gene47552 | 0.803555 | 3.30E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene47552 | 0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene47552 | 0.836422 | 9.44E-57 | -1.69E-46 |
| MS.gene05423 | MS.gene47552 | 0.814387 | 1.58E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene47552 | -0.816461 | 5.47E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene47552 | 0.849809 | 2.55E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene47552 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene47552 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene47552 | 0.81098 | 8.80E-51 | -1.69E-46 |
| MS.gene05531 | MS.gene47552 | 0.825665 | 4.14E-54 | -1.69E-46 |
| MS.gene055586 | MS.gene47552 | 0.814796 | 1.28E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene47552 | 0.807808 | 4.22E-50 | -1.69E-46 |
| MS.gene055725 | MS.gene47552 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene47552 | 0.804868 | 1.76E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene47552 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene47552 | 0.824126 | 9.55E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene47552 | 0.802308 | 5.97E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene47552 | 0.833437 | 5.34E-56 | -1.69E-46 |
| MS.gene056272 | MS.gene47552 | 0.834956 | 2.22E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene47552 | 0.8166 | 5.09E-52 | -1.69E-46 |
| MS.gene05669 | MS.gene47552 | 0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene47552 | 0.80416 | 2.47E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene47552 | 0.821785 | 3.36E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene47552 | 0.816877 | 4.41E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene47552 | 0.821498 | 3.91E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene47552 | 0.815354 | 9.65E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene47552 | 0.807466 | 4.99E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene47552 | 0.810675 | 1.02E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene47552 | 0.816105 | 6.57E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene47552 | 0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene47552 | 0.826821 | 2.20E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene47552 | 0.820036 | 8.48E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene47552 | 0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene059458 | MS.gene47552 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene059459 | MS.gene47552 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene059460 | MS.gene47552 | 0.829925 | 3.92E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene47552 | 0.84954 | 3.03E-60 | -1.69E-46 |
| MS.gene059625 | MS.gene47552 | 0.838512 | 2.75E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene47552 | 0.829464 | 5.07E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene47552 | -0.814696 | 1.35E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47552.t1 | MTR_5g034530 | 46.269 | 67 | 36 | 0 | 80 | 146 | 12 | 78 | 1.60e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47552.t1 | AT3G42170 | 27.041 | 392 | 259 | 6 | 65 | 445 | 298 | 673 | 9.58e-44 | 164 |
| MS.gene47552.t1 | AT3G42170 | 27.041 | 392 | 259 | 6 | 65 | 445 | 276 | 651 | 9.86e-44 | 164 |
| MS.gene47552.t1 | AT1G18560 | 23.056 | 373 | 237 | 11 | 99 | 445 | 300 | 648 | 9.42e-19 | 89.7 |
Find 92 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGGATCGACACCAATTT+TGG | 0.158761 | 4.3:-25477009 | None:intergenic |
| GATATTACTAACAAGGTTTC+TGG | 0.158954 | 4.3:+25476302 | MS.gene47552:CDS |
| ACAAATTGCATCTTGTTTCT+AGG | 0.170369 | 4.3:-25476515 | None:intergenic |
| TTGGGCAAGAATTGGATATT+TGG | 0.245664 | 4.3:-25476855 | None:intergenic |
| CACTAGTTTGTGCCCAAAAT+TGG | 0.262710 | 4.3:+25476996 | MS.gene47552:CDS |
| AACTCAATCTTCTAATGATA+TGG | 0.269191 | 4.3:+25476664 | MS.gene47552:CDS |
| ATCAGATGTTGAAGATCTTT+TGG | 0.279008 | 4.3:+25477039 | MS.gene47552:CDS |
| CAATTCAATATGTCAAAATT+AGG | 0.283111 | 4.3:-25476815 | None:intergenic |
| TTTGGAAAATGCATTGGATT+TGG | 0.310667 | 4.3:+25476706 | MS.gene47552:CDS |
| ATAGGTTTAGAACTTGCATT+AGG | 0.320588 | 4.3:+25476079 | MS.gene47552:CDS |
| AGGTAAGTATGATAAATATT+GGG | 0.337982 | 4.3:+25476442 | MS.gene47552:CDS |
| AGTGGAAGAACTTGATGTTT+TGG | 0.338776 | 4.3:+25476688 | MS.gene47552:CDS |
| ACTAGTGCTTCAACTGTCTT+TGG | 0.347826 | 4.3:-25476980 | None:intergenic |
| GTAGAGTGCTAAATTGTTAT+AGG | 0.362421 | 4.3:+25476945 | MS.gene47552:CDS |
| AAGGTAAGTATGATAAATAT+TGG | 0.362831 | 4.3:+25476441 | MS.gene47552:CDS |
| GAAGAGAGGTGATTAGTGTT+TGG | 0.365930 | 4.3:-25475377 | None:intergenic |
| CTAGCAACTTGGGCAAGAAT+TGG | 0.369016 | 4.3:-25476863 | None:intergenic |
| TTTGGAGGACTTAGAACAAC+TGG | 0.375696 | 4.3:+25477057 | MS.gene47552:CDS |
| GCGACGCCCACCTCCGATAT+CGG | 0.386741 | 4.3:+25475414 | MS.gene47552:CDS |
| TCTTCAGTCAGCTGTGGTAT+TGG | 0.398254 | 4.3:-25477213 | None:intergenic |
| GCCGATTCCGTCACCCTCTT+CGG | 0.407057 | 4.3:+25475447 | MS.gene47552:CDS |
| AGATATAAGCTTTGTATTCA+AGG | 0.410404 | 4.3:+25476626 | MS.gene47552:CDS |
| GGCGGCGGTGGTACCGATAT+CGG | 0.415783 | 4.3:-25475427 | None:intergenic |
| CCAACACATCTCTAGCAACT+TGG | 0.420043 | 4.3:-25476874 | None:intergenic |
| TCTTCAACATCTGATGCAAT+TGG | 0.422249 | 4.3:-25477031 | None:intergenic |
| GGTGGTACCGATATCGGAGG+TGG | 0.437197 | 4.3:-25475421 | None:intergenic |
| ACTCCCTATCCATTTCTTGA+AGG | 0.438601 | 4.3:-25476381 | None:intergenic |
| TATTGACTACCTTCAAGAAA+TGG | 0.439729 | 4.3:+25476372 | MS.gene47552:CDS |
| TGGAATTCACATCCACTAAA+GGG | 0.442210 | 4.3:+25475922 | MS.gene47552:CDS |
| GGTGACGGAATCGGCGGCGG+TGG | 0.442732 | 4.3:-25475439 | None:intergenic |
| CTCTTTCTCTATGAATCATC+AGG | 0.447340 | 4.3:+25475504 | MS.gene47552:CDS |
| AATCTCCCGGTCGCATGGAT+AGG | 0.453439 | 4.3:+25476061 | MS.gene47552:CDS |
| GCCGAAGAGGGTGACGGAAT+CGG | 0.460039 | 4.3:-25475448 | None:intergenic |
| ACAAGATGCAATTTGTTAAG+TGG | 0.463036 | 4.3:+25476522 | MS.gene47552:CDS |
| GTAAGTAATAGCAACATCAT+TGG | 0.463572 | 4.3:-25475878 | None:intergenic |
| GGCAAGAATTGGATATTTGG+TGG | 0.470268 | 4.3:-25476852 | None:intergenic |
| CAAGATGCAATTTGTTAAGT+GGG | 0.478466 | 4.3:+25476523 | MS.gene47552:CDS |
| TCTGAAGCAACAGTAGAAAC+AGG | 0.480321 | 4.3:-25476902 | None:intergenic |
| GGGAGTTCTGACAAACATCT+TGG | 0.487268 | 4.3:+25476398 | MS.gene47552:CDS |
| CATGAATAAATGTTATGAAA+AGG | 0.491303 | 4.3:+25476547 | MS.gene47552:CDS |
| TTGAATCTTGTTGTCAAAGA+CGG | 0.494458 | 4.3:+25475979 | MS.gene47552:CDS |
| TCGTCAATCTCCCGGTCGCA+TGG | 0.499716 | 4.3:+25476056 | MS.gene47552:CDS |
| CTGGAATTCACATCCACTAA+AGG | 0.500214 | 4.3:+25475921 | MS.gene47552:CDS |
| GTTGCTATTACTTACTTGAA+AGG | 0.509736 | 4.3:+25475886 | MS.gene47552:CDS |
| TAGGTTTAGAACTTGCATTA+GGG | 0.511776 | 4.3:+25476080 | MS.gene47552:CDS |
| GGTAAGTATGATAAATATTG+GGG | 0.512358 | 4.3:+25476443 | MS.gene47552:CDS |
| GAGGGTGACGGAATCGGCGG+CGG | 0.514193 | 4.3:-25475442 | None:intergenic |
| ACTACCTTCAAGAAATGGAT+AGG | 0.517007 | 4.3:+25476377 | MS.gene47552:CDS |
| CATAGAGAAAGAGTCGGATC+CGG | 0.517232 | 4.3:-25475494 | None:intergenic |
| TGAAGTGGATTTGTATCTCA+TGG | 0.531319 | 4.3:+25476772 | MS.gene47552:CDS |
| GGATCCGGTGAGAGGATTGT+TGG | 0.533260 | 4.3:-25475479 | None:intergenic |
| TCTAAACCTATCCATGCGAC+CGG | 0.534074 | 4.3:-25476067 | None:intergenic |
| ATCTTCTAATGATATGGAAG+TGG | 0.541150 | 4.3:+25476670 | MS.gene47552:CDS |
| AGGTGGGCGTCGCATTGCAA+AGG | 0.548967 | 4.3:-25475404 | None:intergenic |
| CAACACATCTCTAGCAACTT+GGG | 0.551817 | 4.3:-25476873 | None:intergenic |
| GTGGTACCGATATCGGAGGT+GGG | 0.554552 | 4.3:-25475420 | None:intergenic |
| CAGTGCAATTAAGTTTCAGA+AGG | 0.555821 | 4.3:+25476179 | MS.gene47552:CDS |
| GTGGATTTGTATCTCATGGA+GGG | 0.558666 | 4.3:+25476776 | MS.gene47552:CDS |
| ACAATTTAGCACTCTACCTC+CGG | 0.559773 | 4.3:-25476939 | None:intergenic |
| AGATATGTTCGTCAATCTCC+CGG | 0.560668 | 4.3:+25476048 | MS.gene47552:CDS |
| TAATATGAATGTAAATGAAG+TGG | 0.560827 | 4.3:+25476757 | MS.gene47552:CDS |
| GGTGGGCGTCGCATTGCAAA+GGG | 0.565362 | 4.3:-25475403 | None:intergenic |
| AAAGAGTCGGATCCGGTGAG+AGG | 0.572184 | 4.3:-25475487 | None:intergenic |
| AGAAAAGTGTACTGTGCAGT+TGG | 0.581054 | 4.3:+25476116 | MS.gene47552:CDS |
| CCAAGTTGCTAGAGATGTGT+TGG | 0.581621 | 4.3:+25476874 | MS.gene47552:CDS |
| TTGGTGATGCTTGCCGAAGA+GGG | 0.584712 | 4.3:-25475460 | None:intergenic |
| ATTAAGTTGAAGGAATCGTA+TGG | 0.589423 | 4.3:+25475330 | MS.gene47552:CDS |
| CTACCTTCAAGAAATGGATA+GGG | 0.591958 | 4.3:+25476378 | MS.gene47552:CDS |
| GACTTAGAACAACTGGAACT+AGG | 0.592987 | 4.3:+25477064 | MS.gene47552:CDS |
| TGACATATTGAATTGGTGGA+AGG | 0.597517 | 4.3:+25476823 | MS.gene47552:CDS |
| TGACAAACATCTTGGAGACA+TGG | 0.601396 | 4.3:+25476406 | MS.gene47552:CDS |
| GTTGGTGATGCTTGCCGAAG+AGG | 0.603419 | 4.3:-25475461 | None:intergenic |
| CTAAACCTATCCATGCGACC+GGG | 0.603499 | 4.3:-25476066 | None:intergenic |
| ATCACCAACAATCCTCTCAC+CGG | 0.604418 | 4.3:+25475475 | MS.gene47552:CDS |
| ATGCTTGCCGAAGAGGGTGA+CGG | 0.608346 | 4.3:-25475454 | None:intergenic |
| CTTGTTGATATATGTTGCAG+TGG | 0.608677 | 4.3:+25476484 | MS.gene47552:CDS |
| GGAATTCACATCCACTAAAG+GGG | 0.608914 | 4.3:+25475923 | MS.gene47552:CDS |
| AACATCTGATGCAATTGGAG+AGG | 0.621951 | 4.3:-25477026 | None:intergenic |
| AAGATGCAATTTGTTAAGTG+GGG | 0.634337 | 4.3:+25476524 | MS.gene47552:CDS |
| GACATCTCTTCAGTCAGCTG+TGG | 0.639310 | 4.3:-25477219 | None:intergenic |
| ATTGCAAAGGGAGAGAAGAG+AGG | 0.642302 | 4.3:-25475391 | None:intergenic |
| ATGATTCATAGAGAAAGAGT+CGG | 0.644865 | 4.3:-25475500 | None:intergenic |
| GAAGAGGGTGACGGAATCGG+CGG | 0.650316 | 4.3:-25475445 | None:intergenic |
| GACATGGCTGCAATGATGAA+AGG | 0.652964 | 4.3:+25476422 | MS.gene47552:CDS |
| TGCAGTTGGATGTCTCAACT+AGG | 0.666540 | 4.3:+25476130 | MS.gene47552:CDS |
| AGTGGATTTGTATCTCATGG+AGG | 0.666727 | 4.3:+25476775 | MS.gene47552:CDS |
| AGCAACAGTAGAAACAGGCA+TGG | 0.670724 | 4.3:-25476897 | None:intergenic |
| GAATTCACATCCACTAAAGG+GGG | 0.671735 | 4.3:+25475924 | MS.gene47552:CDS |
| ATTGAGTGAAAAGTGTGCTG+AGG | 0.693238 | 4.3:+25476212 | MS.gene47552:CDS |
| GGCGGTGGTACCGATATCGG+AGG | 0.697125 | 4.3:-25475424 | None:intergenic |
| GTAAGTATGATAAATATTGG+GGG | 0.704348 | 4.3:+25476444 | MS.gene47552:CDS |
| AGTTGGATGTCTCAACTAGG+TGG | 0.748279 | 4.3:+25476133 | MS.gene47552:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATCATAAAATATTTTC+AGG | - | chr4.3:25476289-25476308 | None:intergenic | 10.0% |
| !! | TAGAAAAATTGAAAAATGTT+TGG | + | chr4.3:25475804-25475823 | MS.gene47552:intron | 15.0% |
| !!! | ATTTTATGATATTACTAACA+AGG | + | chr4.3:25476295-25476314 | MS.gene47552:CDS | 15.0% |
| !!! | CTTATATTTTTTGCATTATA+AGG | + | chr4.3:25475699-25475718 | MS.gene47552:intron | 15.0% |
| !!! | TTCTAATATATTCTTTTTGA+TGG | - | chr4.3:25475789-25475808 | None:intergenic | 15.0% |
| !! | AAAAATTGAAAAATGTTTGG+AGG | + | chr4.3:25475807-25475826 | MS.gene47552:intron | 20.0% |
| !! | AAGGTAAGTATGATAAATAT+TGG | + | chr4.3:25476441-25476460 | MS.gene47552:CDS | 20.0% |
| !! | AGGTAAGTATGATAAATATT+GGG | + | chr4.3:25476442-25476461 | MS.gene47552:CDS | 20.0% |
| !! | CAATTCAATATGTCAAAATT+AGG | - | chr4.3:25476818-25476837 | None:intergenic | 20.0% |
| !! | CATGAATAAATGTTATGAAA+AGG | + | chr4.3:25476547-25476566 | MS.gene47552:CDS | 20.0% |
| !! | TAATATGAATGTAAATGAAG+TGG | + | chr4.3:25476757-25476776 | MS.gene47552:CDS | 20.0% |
| !! | TCTTATTGTTGAATTTCTTA+TGG | + | chr4.3:25477099-25477118 | MS.gene47552:intron | 20.0% |
| !!! | ATTTTTTGCATTATAAGGAA+AGG | + | chr4.3:25475704-25475723 | MS.gene47552:intron | 20.0% |
| !!! | CTAATTTTGACATATTGAAT+TGG | + | chr4.3:25476816-25476835 | MS.gene47552:CDS | 20.0% |
| !!! | TAATTTTTCTAATTGAAGAC+TGG | - | chr4.3:25476017-25476036 | None:intergenic | 20.0% |
| !!! | TATTTTCAGGAATTTAACAA+AGG | - | chr4.3:25476276-25476295 | None:intergenic | 20.0% |
| ! | AACTCAATCTTCTAATGATA+TGG | + | chr4.3:25476664-25476683 | MS.gene47552:CDS | 25.0% |
| ! | ATCAGATAGATTAGAAACAA+TGG | + | chr4.3:25475588-25475607 | MS.gene47552:intron | 25.0% |
| ! | GGTAAGTATGATAAATATTG+GGG | + | chr4.3:25476443-25476462 | MS.gene47552:CDS | 25.0% |
| ! | GTAAGTATGATAAATATTGG+GGG | + | chr4.3:25476444-25476463 | MS.gene47552:CDS | 25.0% |
| ! | TACTTACTTGAAAGGAAAAA+TGG | + | chr4.3:25475894-25475913 | MS.gene47552:CDS | 25.0% |
| ! | TCAGATAGATTAGAAACAAT+GGG | + | chr4.3:25475589-25475608 | MS.gene47552:intron | 25.0% |
| !! | AGATATAAGCTTTGTATTCA+AGG | + | chr4.3:25476626-25476645 | MS.gene47552:CDS | 25.0% |
| !!! | ATTTTGACATATTGAATTGG+TGG | + | chr4.3:25476819-25476838 | MS.gene47552:CDS | 25.0% |
| !!! | TTTTTTGTCTGATAAGGTAA+AGG | + | chr4.3:25476580-25476599 | MS.gene47552:CDS | 25.0% |
| ATCTTCTAATGATATGGAAG+TGG | + | chr4.3:25476670-25476689 | MS.gene47552:CDS | 30.0% | |
| ATGATTCATAGAGAAAGAGT+CGG | - | chr4.3:25475503-25475522 | None:intergenic | 30.0% | |
| GATATTACTAACAAGGTTTC+TGG | + | chr4.3:25476302-25476321 | MS.gene47552:CDS | 30.0% | |
| GTAAGTAATAGCAACATCAT+TGG | - | chr4.3:25475881-25475900 | None:intergenic | 30.0% | |
| TGTGAAAATCCATGATCAAA+GGG | + | chr4.3:25475627-25475646 | MS.gene47552:intron | 30.0% | |
| TTACTTGAAAGGAAAAATGG+AGG | + | chr4.3:25475897-25475916 | MS.gene47552:CDS | 30.0% | |
| TTGTGAAAATCCATGATCAA+AGG | + | chr4.3:25475626-25475645 | MS.gene47552:intron | 30.0% | |
| TTTGGAAAATGCATTGGATT+TGG | + | chr4.3:25476706-25476725 | MS.gene47552:CDS | 30.0% | |
| ! | ACAAATTGCATCTTGTTTCT+AGG | - | chr4.3:25476518-25476537 | None:intergenic | 30.0% |
| ! | ATAGGTTTAGAACTTGCATT+AGG | + | chr4.3:25476079-25476098 | MS.gene47552:CDS | 30.0% |
| ! | ATCAGATGTTGAAGATCTTT+TGG | + | chr4.3:25477039-25477058 | MS.gene47552:CDS | 30.0% |
| ! | GTAGAGTGCTAAATTGTTAT+AGG | + | chr4.3:25476945-25476964 | MS.gene47552:CDS | 30.0% |
| ! | GTTGCTATTACTTACTTGAA+AGG | + | chr4.3:25475886-25475905 | MS.gene47552:CDS | 30.0% |
| ! | TAGGTTTAGAACTTGCATTA+GGG | + | chr4.3:25476080-25476099 | MS.gene47552:CDS | 30.0% |
| ! | TATTGACTACCTTCAAGAAA+TGG | + | chr4.3:25476372-25476391 | MS.gene47552:CDS | 30.0% |
| ! | TTGAATCTTGTTGTCAAAGA+CGG | + | chr4.3:25475979-25475998 | MS.gene47552:CDS | 30.0% |
| !! | AAGATGCAATTTGTTAAGTG+GGG | + | chr4.3:25476524-25476543 | MS.gene47552:CDS | 30.0% |
| !! | ACAAGATGCAATTTGTTAAG+TGG | + | chr4.3:25476522-25476541 | MS.gene47552:CDS | 30.0% |
| !! | ATTAAGTTGAAGGAATCGTA+TGG | + | chr4.3:25475330-25475349 | MS.gene47552:CDS | 30.0% |
| !! | CAAGATGCAATTTGTTAAGT+GGG | + | chr4.3:25476523-25476542 | MS.gene47552:CDS | 30.0% |
| !!! | GACTTTTGCTATTAAGTTGA+AGG | + | chr4.3:25475320-25475339 | MS.gene47552:CDS | 30.0% |
| !!! | TGATGTTTTGGAAAATGCAT+TGG | + | chr4.3:25476700-25476719 | MS.gene47552:CDS | 30.0% |
| !!! | TGCTGATTTTTTGTCTGATA+AGG | + | chr4.3:25476574-25476593 | MS.gene47552:CDS | 30.0% |
| ACTACCTTCAAGAAATGGAT+AGG | + | chr4.3:25476377-25476396 | MS.gene47552:CDS | 35.0% | |
| CAGTGCAATTAAGTTTCAGA+AGG | + | chr4.3:25476179-25476198 | MS.gene47552:CDS | 35.0% | |
| CTACCTTCAAGAAATGGATA+GGG | + | chr4.3:25476378-25476397 | MS.gene47552:CDS | 35.0% | |
| CTCTTTCTCTATGAATCATC+AGG | + | chr4.3:25475504-25475523 | MS.gene47552:CDS | 35.0% | |
| CTTGTTGATATATGTTGCAG+TGG | + | chr4.3:25476484-25476503 | MS.gene47552:CDS | 35.0% | |
| GGGCGCTATTAATGTAATTT+GGG | + | chr4.3:25475647-25475666 | MS.gene47552:intron | 35.0% | |
| GGTTCCAAAAAATGAGGATT+GGG | + | chr4.3:25476238-25476257 | MS.gene47552:intron | 35.0% | |
| TCTTCAACATCTGATGCAAT+TGG | - | chr4.3:25477034-25477053 | None:intergenic | 35.0% | |
| TGACATATTGAATTGGTGGA+AGG | + | chr4.3:25476823-25476842 | MS.gene47552:CDS | 35.0% | |
| TGATTCAGCTATTGAAGAGA+AGG | - | chr4.3:25475572-25475591 | None:intergenic | 35.0% | |
| TGGAATTCACATCCACTAAA+GGG | + | chr4.3:25475922-25475941 | MS.gene47552:CDS | 35.0% | |
| TTGAAAAATGTTTGGAGGAG+TGG | + | chr4.3:25475812-25475831 | MS.gene47552:intron | 35.0% | |
| TTGGGCAAGAATTGGATATT+TGG | - | chr4.3:25476858-25476877 | None:intergenic | 35.0% | |
| ! | ACTAGCATTATCGACTGTAA+TGG | - | chr4.3:25475857-25475876 | None:intergenic | 35.0% |
| ! | AGATGTTGAAGATCTTTTGG+AGG | + | chr4.3:25477042-25477061 | MS.gene47552:CDS | 35.0% |
| ! | AGGGCGCTATTAATGTAATT+TGG | + | chr4.3:25475646-25475665 | MS.gene47552:intron | 35.0% |
| ! | AGTGGAAGAACTTGATGTTT+TGG | + | chr4.3:25476688-25476707 | MS.gene47552:CDS | 35.0% |
| ! | TGAAGTGGATTTGTATCTCA+TGG | + | chr4.3:25476772-25476791 | MS.gene47552:CDS | 35.0% |
| !!! | TTCTCCCAATCCTCATTTTT+TGG | - | chr4.3:25476245-25476264 | None:intergenic | 35.0% |
| AACATCTGATGCAATTGGAG+AGG | - | chr4.3:25477029-25477048 | None:intergenic | 40.0% | |
| ACAATTTAGCACTCTACCTC+CGG | - | chr4.3:25476942-25476961 | None:intergenic | 40.0% | |
| ACTAGTGCTTCAACTGTCTT+TGG | - | chr4.3:25476983-25477002 | None:intergenic | 40.0% | |
| ACTCCCTATCCATTTCTTGA+AGG | - | chr4.3:25476384-25476403 | None:intergenic | 40.0% | |
| AGATATGTTCGTCAATCTCC+CGG | + | chr4.3:25476048-25476067 | MS.gene47552:CDS | 40.0% | |
| CAACACATCTCTAGCAACTT+GGG | - | chr4.3:25476876-25476895 | None:intergenic | 40.0% | |
| CTGGAATTCACATCCACTAA+AGG | + | chr4.3:25475921-25475940 | MS.gene47552:CDS | 40.0% | |
| GAAGAGAGGTGATTAGTGTT+TGG | - | chr4.3:25475380-25475399 | None:intergenic | 40.0% | |
| GAATTCACATCCACTAAAGG+GGG | + | chr4.3:25475924-25475943 | MS.gene47552:CDS | 40.0% | |
| GACTTAGAACAACTGGAACT+AGG | + | chr4.3:25477064-25477083 | MS.gene47552:CDS | 40.0% | |
| GGAATTCACATCCACTAAAG+GGG | + | chr4.3:25475923-25475942 | MS.gene47552:CDS | 40.0% | |
| GGCAAGAATTGGATATTTGG+TGG | - | chr4.3:25476855-25476874 | None:intergenic | 40.0% | |
| GGGTTCCAAAAAATGAGGAT+TGG | + | chr4.3:25476237-25476256 | MS.gene47552:intron | 40.0% | |
| GTGGATTTGTATCTCATGGA+GGG | + | chr4.3:25476776-25476795 | MS.gene47552:CDS | 40.0% | |
| TGAAAGGAAAAATGGAGGAC+TGG | + | chr4.3:25475902-25475921 | MS.gene47552:CDS | 40.0% | |
| TGACAAACATCTTGGAGACA+TGG | + | chr4.3:25476406-25476425 | MS.gene47552:CDS | 40.0% | |
| TGTAAGTATTCCCCCTTTAG+TGG | - | chr4.3:25475937-25475956 | None:intergenic | 40.0% | |
| TTAATAGCGCCCTTTGATCA+TGG | - | chr4.3:25475639-25475658 | None:intergenic | 40.0% | |
| TTTGGAGGACTTAGAACAAC+TGG | + | chr4.3:25477057-25477076 | MS.gene47552:CDS | 40.0% | |
| ! | AGAAAAGTGTACTGTGCAGT+TGG | + | chr4.3:25476116-25476135 | MS.gene47552:CDS | 40.0% |
| ! | AGAGGATCGACACCAATTTT+GGG | - | chr4.3:25477011-25477030 | None:intergenic | 40.0% |
| ! | AGTGGATTTGTATCTCATGG+AGG | + | chr4.3:25476775-25476794 | MS.gene47552:CDS | 40.0% |
| ! | ATTGAGTGAAAAGTGTGCTG+AGG | + | chr4.3:25476212-25476231 | MS.gene47552:CDS | 40.0% |
| ! | CACTAGTTTGTGCCCAAAAT+TGG | + | chr4.3:25476996-25477015 | MS.gene47552:CDS | 40.0% |
| ! | TCTGAAGCAACAGTAGAAAC+AGG | - | chr4.3:25476905-25476924 | None:intergenic | 40.0% |
| !! | GAAGGAAAAGAGTATCAGAG+TGG | - | chr4.3:25475554-25475573 | None:intergenic | 40.0% |
| !! | TCAGAGTCTGCTTTTAGTAC+CGG | + | chr4.3:25476920-25476939 | MS.gene47552:CDS | 40.0% |
| AGCAACAGTAGAAACAGGCA+TGG | - | chr4.3:25476900-25476919 | None:intergenic | 45.0% | |
| AGCAAGCTACCAAACTCTAC+AGG | - | chr4.3:25475737-25475756 | None:intergenic | 45.0% | |
| AGGGGGAATACTTACATGTC+AGG | + | chr4.3:25475941-25475960 | MS.gene47552:CDS | 45.0% | |
| AGGTGGGGTTCCAAAAAATG+AGG | + | chr4.3:25476232-25476251 | MS.gene47552:intron | 45.0% | |
| AGTTGGATGTCTCAACTAGG+TGG | + | chr4.3:25476133-25476152 | MS.gene47552:CDS | 45.0% | |
| ATCACCAACAATCCTCTCAC+CGG | + | chr4.3:25475475-25475494 | MS.gene47552:CDS | 45.0% | |
| ATTGCAAAGGGAGAGAAGAG+AGG | - | chr4.3:25475394-25475413 | None:intergenic | 45.0% | |
| CATAGAGAAAGAGTCGGATC+CGG | - | chr4.3:25475497-25475516 | None:intergenic | 45.0% | |
| CCAACACATCTCTAGCAACT+TGG | - | chr4.3:25476877-25476896 | None:intergenic | 45.0% | |
| CCAAGTTGCTAGAGATGTGT+TGG | + | chr4.3:25476874-25476893 | MS.gene47552:CDS | 45.0% | |
| CTAGCAACTTGGGCAAGAAT+TGG | - | chr4.3:25476866-25476885 | None:intergenic | 45.0% | |
| GACATGGCTGCAATGATGAA+AGG | + | chr4.3:25476422-25476441 | MS.gene47552:CDS | 45.0% | |
| GCAAGCTACCAAACTCTACA+GGG | - | chr4.3:25475736-25475755 | None:intergenic | 45.0% | |
| TCTAAACCTATCCATGCGAC+CGG | - | chr4.3:25476070-25476089 | None:intergenic | 45.0% | |
| TCTTCAGTCAGCTGTGGTAT+TGG | - | chr4.3:25477216-25477235 | None:intergenic | 45.0% | |
| TGCAGTTGGATGTCTCAACT+AGG | + | chr4.3:25476130-25476149 | MS.gene47552:CDS | 45.0% | |
| ! | AGTGAAAAGTGTGCTGAGGT+GGG | + | chr4.3:25476216-25476235 | MS.gene47552:intron | 45.0% |
| ! | GAGAGGATCGACACCAATTT+TGG | - | chr4.3:25477012-25477031 | None:intergenic | 45.0% |
| ! | GGGAGTTCTGACAAACATCT+TGG | + | chr4.3:25476398-25476417 | MS.gene47552:CDS | 45.0% |
| CTAAACCTATCCATGCGACC+GGG | - | chr4.3:25476069-25476088 | None:intergenic | 50.0% | |
| GACATCTCTTCAGTCAGCTG+TGG | - | chr4.3:25477222-25477241 | None:intergenic | 50.0% | |
| ! | GAGTGAAAAGTGTGCTGAGG+TGG | + | chr4.3:25476215-25476234 | MS.gene47552:intron | 50.0% |
| ! | GTGAAAAGTGTGCTGAGGTG+GGG | + | chr4.3:25476217-25476236 | MS.gene47552:intron | 50.0% |
| !! | GAGTCTGCTTTTAGTACCGG+AGG | + | chr4.3:25476923-25476942 | MS.gene47552:CDS | 50.0% |
| !! | TTGGTGATGCTTGCCGAAGA+GGG | - | chr4.3:25475463-25475482 | None:intergenic | 50.0% |
| AAAGAGTCGGATCCGGTGAG+AGG | - | chr4.3:25475490-25475509 | None:intergenic | 55.0% | |
| AATCTCCCGGTCGCATGGAT+AGG | + | chr4.3:25476061-25476080 | MS.gene47552:CDS | 55.0% | |
| ATGCTTGCCGAAGAGGGTGA+CGG | - | chr4.3:25475457-25475476 | None:intergenic | 55.0% | |
| GGATCCGGTGAGAGGATTGT+TGG | - | chr4.3:25475482-25475501 | None:intergenic | 55.0% | |
| GGATGCGTCCCTGTAGAGTT+TGG | + | chr4.3:25475725-25475744 | MS.gene47552:intron | 55.0% | |
| !! | GTGGTACCGATATCGGAGGT+GGG | - | chr4.3:25475423-25475442 | None:intergenic | 55.0% |
| !! | GTTGGTGATGCTTGCCGAAG+AGG | - | chr4.3:25475464-25475483 | None:intergenic | 55.0% |
| TCGTCAATCTCCCGGTCGCA+TGG | + | chr4.3:25476056-25476075 | MS.gene47552:CDS | 60.0% | |
| ! | AGGTGGGCGTCGCATTGCAA+AGG | - | chr4.3:25475407-25475426 | None:intergenic | 60.0% |
| ! | GCCGATTCCGTCACCCTCTT+CGG | + | chr4.3:25475447-25475466 | MS.gene47552:CDS | 60.0% |
| ! | GGTGGGCGTCGCATTGCAAA+GGG | - | chr4.3:25475406-25475425 | None:intergenic | 60.0% |
| !! | GAAGAGGGTGACGGAATCGG+CGG | - | chr4.3:25475448-25475467 | None:intergenic | 60.0% |
| !! | GCCGAAGAGGGTGACGGAAT+CGG | - | chr4.3:25475451-25475470 | None:intergenic | 60.0% |
| !! | GGTGGTACCGATATCGGAGG+TGG | - | chr4.3:25475424-25475443 | None:intergenic | 60.0% |
| GCGACGCCCACCTCCGATAT+CGG | + | chr4.3:25475414-25475433 | MS.gene47552:CDS | 65.0% | |
| !! | GGCGGCGGTGGTACCGATAT+CGG | - | chr4.3:25475430-25475449 | None:intergenic | 65.0% |
| !! | GGCGGTGGTACCGATATCGG+AGG | - | chr4.3:25475427-25475446 | None:intergenic | 65.0% |
| !! | GAGGGTGACGGAATCGGCGG+CGG | - | chr4.3:25475445-25475464 | None:intergenic | 70.0% |
| !! | GGTGACGGAATCGGCGGCGG+TGG | - | chr4.3:25475442-25475461 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25475318 | 25477260 | 25475318 | ID=MS.gene47552 |
| chr4.3 | mRNA | 25475318 | 25477260 | 25475318 | ID=MS.gene47552.t1;Parent=MS.gene47552 |
| chr4.3 | exon | 25475318 | 25475525 | 25475318 | ID=MS.gene47552.t1.exon1;Parent=MS.gene47552.t1 |
| chr4.3 | CDS | 25475318 | 25475525 | 25475318 | ID=cds.MS.gene47552.t1;Parent=MS.gene47552.t1 |
| chr4.3 | exon | 25475863 | 25476233 | 25475863 | ID=MS.gene47552.t1.exon2;Parent=MS.gene47552.t1 |
| chr4.3 | CDS | 25475863 | 25476233 | 25475863 | ID=cds.MS.gene47552.t1;Parent=MS.gene47552.t1 |
| chr4.3 | exon | 25476263 | 25477085 | 25476263 | ID=MS.gene47552.t1.exon3;Parent=MS.gene47552.t1 |
| chr4.3 | CDS | 25476263 | 25477085 | 25476263 | ID=cds.MS.gene47552.t1;Parent=MS.gene47552.t1 |
| chr4.3 | exon | 25477205 | 25477260 | 25477205 | ID=MS.gene47552.t1.exon4;Parent=MS.gene47552.t1 |
| chr4.3 | CDS | 25477205 | 25477260 | 25477205 | ID=cds.MS.gene47552.t1;Parent=MS.gene47552.t1 |
| Gene Sequence |
| Protein sequence |
