Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68824.t1 | XP_003631014.2 | 66.7 | 225 | 22 | 3 | 22 | 194 | 760 | 983 | 1.20E-69 | 273.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68824.t1 | Q9C5U0 | 48.8 | 213 | 60 | 3 | 33 | 203 | 864 | 1069 | 7.0e-45 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68824.t1 | G7LCC4 | 66.7 | 225 | 22 | 3 | 22 | 194 | 517 | 740 | 9.0e-70 | 273.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68824.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene68824 | 0.824477 | 7.90E-54 | -1.69E-46 |
| MS.gene049272 | MS.gene68824 | 0.816682 | 4.88E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene68824 | 0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene68824 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene68824 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene68824 | 0.828811 | 7.31E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene68824 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene68824 | 0.849704 | 2.73E-60 | -1.69E-46 |
| MS.gene050029 | MS.gene68824 | 0.821841 | 3.26E-53 | -1.69E-46 |
| MS.gene050031 | MS.gene68824 | 0.842027 | 3.32E-58 | -1.69E-46 |
| MS.gene050043 | MS.gene68824 | 0.832801 | 7.68E-56 | -1.69E-46 |
| MS.gene050201 | MS.gene68824 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene050237 | MS.gene68824 | 0.801458 | 8.92E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene68824 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene68824 | 0.849025 | 4.21E-60 | -1.69E-46 |
| MS.gene051181 | MS.gene68824 | 0.813961 | 1.96E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene68824 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene68824 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene68824 | 0.805347 | 1.39E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene68824 | 0.837879 | 4.01E-57 | -1.69E-46 |
| MS.gene051957 | MS.gene68824 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene68824 | 0.837543 | 4.89E-57 | -1.69E-46 |
| MS.gene052208 | MS.gene68824 | 0.812248 | 4.67E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene68824 | -0.811799 | 5.84E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene68824 | 0.869117 | 3.94E-66 | -1.69E-46 |
| MS.gene052561 | MS.gene68824 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene68824 | 0.838226 | 3.26E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene68824 | 0.835962 | 1.24E-56 | -1.69E-46 |
| MS.gene052586 | MS.gene68824 | 0.831072 | 2.05E-55 | -1.69E-46 |
| MS.gene052685 | MS.gene68824 | 0.819621 | 1.05E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene68824 | 0.831662 | 1.47E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene68824 | 0.818253 | 2.16E-52 | -1.69E-46 |
| MS.gene052867 | MS.gene68824 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene68824 | 0.81124 | 7.73E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene68824 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene053145 | MS.gene68824 | 0.814322 | 1.63E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene68824 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene68824 | 0.815898 | 7.30E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene68824 | 0.837653 | 4.58E-57 | -1.69E-46 |
| MS.gene053396 | MS.gene68824 | 0.825462 | 4.63E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene68824 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene68824 | 0.831557 | 1.56E-55 | -1.69E-46 |
| MS.gene053883 | MS.gene68824 | 0.813157 | 2.95E-51 | -1.69E-46 |
| MS.gene053900 | MS.gene68824 | 0.81933 | 1.23E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene68824 | 0.832688 | 8.20E-56 | -1.69E-46 |
| MS.gene05414 | MS.gene68824 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene68824 | 0.8189 | 1.54E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene68824 | 0.816417 | 5.59E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene68824 | 0.818977 | 1.48E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene68824 | -0.83651 | 8.97E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene68824 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene68824 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene68824 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene68824 | 0.846619 | 1.94E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene68824 | 0.825856 | 3.73E-54 | -1.69E-46 |
| MS.gene054991 | MS.gene68824 | 0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene68824 | 0.803939 | 2.74E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene68824 | 0.802414 | 5.67E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene68824 | 0.806465 | 8.12E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene68824 | 0.844775 | 6.14E-59 | -1.69E-46 |
| MS.gene055589 | MS.gene68824 | 0.813861 | 2.07E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene68824 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene68824 | 0.833728 | 4.51E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene68824 | 0.839633 | 1.41E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene68824 | 0.819062 | 1.41E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene68824 | 0.818696 | 1.71E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene68824 | 0.800689 | 1.28E-48 | -1.69E-46 |
| MS.gene056162 | MS.gene68824 | 0.807888 | 4.06E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene68824 | 0.810792 | 9.67E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene68824 | 0.801727 | 7.85E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene68824 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene68824 | 0.840341 | 9.22E-58 | -1.69E-46 |
| MS.gene056373 | MS.gene68824 | 0.800964 | 1.13E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene68824 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene68824 | 0.813995 | 1.93E-51 | -1.69E-46 |
| MS.gene05690 | MS.gene68824 | 0.824926 | 6.20E-54 | -1.69E-46 |
| MS.gene057021 | MS.gene68824 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene68824 | 0.836995 | 6.75E-57 | -1.69E-46 |
| MS.gene057027 | MS.gene68824 | 0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene68824 | 0.819662 | 1.03E-52 | -1.69E-46 |
| MS.gene057287 | MS.gene68824 | 0.812683 | 3.75E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene68824 | 0.814328 | 1.63E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene68824 | 0.859394 | 4.26E-63 | -1.69E-46 |
| MS.gene057921 | MS.gene68824 | 0.823695 | 1.21E-53 | -1.69E-46 |
| MS.gene057932 | MS.gene68824 | 0.807626 | 4.61E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene68824 | 0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene68824 | 0.823457 | 1.37E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene68824 | 0.841481 | 4.63E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene68824 | 0.849825 | 2.52E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene68824 | 0.815377 | 9.54E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene68824 | 0.831852 | 1.32E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene68824 | 0.840659 | 7.61E-58 | -1.69E-46 |
| MS.gene059272 | MS.gene68824 | 0.817874 | 2.63E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene68824 | 0.837137 | 6.21E-57 | -1.69E-46 |
| MS.gene059584 | MS.gene68824 | 0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene68824 | 0.856345 | 3.43E-62 | -1.69E-46 |
| MS.gene059789 | MS.gene68824 | 0.800709 | 1.27E-48 | -1.69E-46 |
| MS.gene059935 | MS.gene68824 | 0.801908 | 7.21E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene68824 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene68824 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene68824 | 0.817802 | 2.73E-52 | -1.69E-46 |
| MS.gene060553 | MS.gene68824 | 0.826537 | 2.57E-54 | -1.69E-46 |
| MS.gene060572 | MS.gene68824 | 0.822717 | 2.04E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene68824 | -0.818675 | 1.73E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene68824 | 0.826172 | 3.14E-54 | -1.69E-46 |
| MS.gene060918 | MS.gene68824 | 0.801549 | 8.55E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene68824 | 0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene68824 | -0.822292 | 2.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68824.t1 | MTR_8g106150 | 66.667 | 225 | 22 | 3 | 22 | 194 | 517 | 740 | 1.18e-91 | 285 |
| MS.gene68824.t1 | MTR_8g106150 | 66.667 | 225 | 22 | 3 | 22 | 194 | 760 | 983 | 2.45e-90 | 286 |
| MS.gene68824.t1 | MTR_8g080770 | 62.963 | 108 | 33 | 1 | 86 | 193 | 746 | 846 | 3.13e-38 | 141 |
| MS.gene68824.t1 | MTR_8g080770 | 62.963 | 108 | 33 | 1 | 86 | 193 | 855 | 955 | 3.91e-38 | 141 |
| MS.gene68824.t1 | MTR_5g097410 | 40.594 | 202 | 73 | 3 | 38 | 194 | 1002 | 1201 | 1.23e-37 | 140 |
| MS.gene68824.t1 | MTR_3g085130 | 41.361 | 191 | 63 | 2 | 44 | 193 | 627 | 809 | 9.33e-37 | 137 |
| MS.gene68824.t1 | MTR_3g085130 | 41.361 | 191 | 63 | 2 | 44 | 193 | 837 | 1019 | 2.41e-36 | 136 |
| MS.gene68824.t1 | MTR_5g044100 | 45.860 | 157 | 64 | 4 | 3 | 143 | 72 | 223 | 1.32e-32 | 118 |
| MS.gene68824.t1 | MTR_3g105590 | 27.168 | 173 | 105 | 5 | 34 | 191 | 768 | 934 | 9.36e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 841 | 1046 | 3.47e-55 | 190 |
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 841 | 1046 | 3.47e-55 | 190 |
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 841 | 1046 | 3.47e-55 | 190 |
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 841 | 1046 | 3.47e-55 | 190 |
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 853 | 1058 | 3.49e-55 | 190 |
| MS.gene68824.t1 | AT2G01830 | 48.826 | 213 | 60 | 3 | 33 | 203 | 864 | 1069 | 4.55e-55 | 190 |
| MS.gene68824.t1 | AT5G35750 | 44.118 | 204 | 71 | 3 | 42 | 202 | 967 | 1170 | 3.63e-44 | 159 |
| MS.gene68824.t1 | AT1G27320 | 42.647 | 204 | 71 | 3 | 36 | 193 | 813 | 1016 | 3.67e-42 | 153 |
Find 50 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCCGTTTACCTATAT+TGG | 0.174752 | 6.1:+80186644 | MS.gene68824:CDS |
| CCTGGATTGCTCAGCTGAAT+TGG | 0.251429 | 6.1:+80187898 | MS.gene68824:CDS |
| TTGAAGCAACTCGTCGAATT+CGG | 0.272691 | 6.1:+80186565 | MS.gene68824:CDS |
| TGAAGCAACTCGTCGAATTC+GGG | 0.321951 | 6.1:+80186566 | MS.gene68824:CDS |
| CAAGTTTGATGCTTGCTTCA+AGG | 0.362213 | 6.1:+80186134 | MS.gene68824:CDS |
| GGATATTCAAATGCAAGAAA+TGG | 0.373656 | 6.1:+80186155 | MS.gene68824:CDS |
| GATCTTCAGTGTGCGGCAAC+TGG | 0.379917 | 6.1:+80185754 | MS.gene68824:CDS |
| ATGTGCTAAAGTCCGCATTC+TGG | 0.389059 | 6.1:-80187931 | None:intergenic |
| TCTGCTGTCATGGCCAATAT+AGG | 0.397938 | 6.1:-80186657 | None:intergenic |
| TGAACAATTCCTTCCTCAAA+AGG | 0.408776 | 6.1:-80186741 | None:intergenic |
| CCAATTCAGCTGAGCAATCC+AGG | 0.420223 | 6.1:-80187898 | None:intergenic |
| CTGGATTGCTCAGCTGAATT+GGG | 0.421005 | 6.1:+80187899 | MS.gene68824:CDS |
| CATACGGGGACTGGCTTCTA+CGG | 0.455310 | 6.1:+80187951 | MS.gene68824:CDS |
| CATGGGTTTGTGGAGAGGAC+GGG | 0.486989 | 6.1:+80185732 | MS.gene68824:CDS |
| TCAGCTGAATTGGGATCTGT+TGG | 0.499150 | 6.1:+80187908 | MS.gene68824:CDS |
| TCATGGCCAATATAGGTAAA+CGG | 0.499301 | 6.1:-80186650 | None:intergenic |
| ACTTTAGCACATACGGGGAC+TGG | 0.511795 | 6.1:+80187942 | MS.gene68824:CDS |
| TCATGGGTTTGTGGAGAGGA+CGG | 0.522273 | 6.1:+80185731 | MS.gene68824:CDS |
| TTCAAATGCAAGAAATGGAC+GGG | 0.522978 | 6.1:+80186160 | MS.gene68824:CDS |
| ATGAAGAGTGTTTGAAATGT+GGG | 0.523905 | 6.1:+80186697 | MS.gene68824:CDS |
| AACACTCTTCATATGTAGCA+TGG | 0.525664 | 6.1:-80186686 | None:intergenic |
| GAAGCCACTGAGAACTAGTA+TGG | 0.525821 | 6.1:+80185890 | MS.gene68824:CDS |
| AATGCGGACTTTAGCACATA+CGG | 0.526953 | 6.1:+80187935 | MS.gene68824:CDS |
| GATGGAGAGGACGGCGAATG+AGG | 0.528403 | 6.1:+80186590 | MS.gene68824:CDS |
| ATGGATTACATCTGCTGTCA+TGG | 0.530208 | 6.1:-80186667 | None:intergenic |
| AACTCGTCGAATTCGGGAGA+TGG | 0.539466 | 6.1:+80186572 | MS.gene68824:CDS |
| TGTTTGAAATGTGGGATGGA+TGG | 0.544805 | 6.1:+80186705 | MS.gene68824:CDS |
| GAGAAAGATTCATGGGTTTG+TGG | 0.557247 | 6.1:+80185722 | MS.gene68824:CDS |
| AGATTCATGGGTTTGTGGAG+AGG | 0.561266 | 6.1:+80185727 | MS.gene68824:CDS |
| GTAGCAAGAAGGATCATTTG+AGG | 0.561281 | 6.1:-80185804 | None:intergenic |
| ATACGGGGACTGGCTTCTAC+GGG | 0.565321 | 6.1:+80187952 | MS.gene68824:CDS |
| TATGAAGAGTGTTTGAAATG+TGG | 0.566182 | 6.1:+80186696 | MS.gene68824:CDS |
| TACTAATATTCGTAGCAAGA+AGG | 0.570683 | 6.1:-80185815 | None:intergenic |
| ATGCGGACTTTAGCACATAC+GGG | 0.575592 | 6.1:+80187936 | MS.gene68824:CDS |
| CGAATGGTGAATGTAGTGAA+AGG | 0.586436 | 6.1:+80186616 | MS.gene68824:CDS |
| ATTCAAATGCAAGAAATGGA+CGG | 0.588460 | 6.1:+80186159 | MS.gene68824:CDS |
| GTCGAATTCGGGAGATGGAG+AGG | 0.601823 | 6.1:+80186577 | MS.gene68824:CDS |
| ATGTCAATGGAAGTGACTGC+AGG | 0.612140 | 6.1:+80186033 | MS.gene68824:CDS |
| CACTGTATCACTAAAACATG+CGG | 0.616849 | 6.1:-80185862 | None:intergenic |
| AGAGTGTTTGAAATGTGGGA+TGG | 0.624246 | 6.1:+80186701 | MS.gene68824:CDS |
| GGGATCTGTTGGCCAGAATG+CGG | 0.637679 | 6.1:+80187919 | MS.gene68824:CDS |
| AATTCGGGAGATGGAGAGGA+CGG | 0.638289 | 6.1:+80186581 | MS.gene68824:CDS |
| AAAATGGTGCTTCCAGCACA+GGG | 0.643044 | 6.1:+80185415 | None:intergenic |
| TGCGGCAACTGGAAACAGAA+CGG | 0.653414 | 6.1:+80185765 | MS.gene68824:CDS |
| ACGGCGAATGAGGAGACGAA+TGG | 0.653590 | 6.1:+80186600 | MS.gene68824:CDS |
| AGGACGGGATCTTCAGTGTG+CGG | 0.664290 | 6.1:+80185747 | MS.gene68824:CDS |
| GATGTGAAGTGTGCAGACAG+CGG | 0.669637 | 6.1:+80186078 | MS.gene68824:CDS |
| TGTCAGGGAAACATTGCTGA+AGG | 0.696155 | 6.1:+80187840 | MS.gene68824:intron |
| TGCGGACTTTAGCACATACG+GGG | 0.719539 | 6.1:+80187937 | MS.gene68824:CDS |
| CCCACCATACTAGTTCTCAG+TGG | 0.729319 | 6.1:-80185894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATTTTTTTTTTAT+TGG | + | chr6.1:80186200-80186219 | MS.gene68824:intron | 0.0% |
| !! | ATGATTTATAAATAACAATA+TGG | - | chr6.1:80186524-80186543 | None:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | chr6.1:80185662-80185681 | MS.gene68824:intron | 10.0% |
| !! | TGATTTATAAATAACAATAT+GGG | - | chr6.1:80186523-80186542 | None:intergenic | 10.0% |
| !! | ATCACTATCATTTATTAAAA+TGG | - | chr6.1:80187767-80187786 | None:intergenic | 15.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | chr6.1:80185479-80185498 | MS.gene68824:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+TGG | - | chr6.1:80185456-80185475 | None:intergenic | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | chr6.1:80185706-80185725 | None:intergenic | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | chr6.1:80185707-80185726 | None:intergenic | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | chr6.1:80187183-80187202 | MS.gene68824:intron | 20.0% |
| !!! | GCTCTAACTTTTTTATATAT+AGG | - | chr6.1:80187242-80187261 | None:intergenic | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | chr6.1:80186904-80186923 | MS.gene68824:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | chr6.1:80186475-80186494 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | chr6.1:80186474-80186493 | None:intergenic | 25.0% |
| ! | GTGTTTAGTATAAAAATCGT+GGG | + | chr6.1:80187493-80187512 | MS.gene68824:intron | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | chr6.1:80186308-80186327 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | chr6.1:80185668-80185687 | MS.gene68824:intron | 25.0% |
| ! | TGTGTTTAGTATAAAAATCG+TGG | + | chr6.1:80187492-80187511 | MS.gene68824:intron | 25.0% |
| ! | TGTTTCATATGAGTAATTAG+AGG | + | chr6.1:80187461-80187480 | MS.gene68824:intron | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | chr6.1:80186541-80186560 | MS.gene68824:intron | 25.0% |
| !! | CTGAATGTTGACATTTTTAT+TGG | + | chr6.1:80187817-80187836 | MS.gene68824:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | chr6.1:80186816-80186835 | MS.gene68824:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | chr6.1:80185715-80185734 | MS.gene68824:CDS | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | chr6.1:80185714-80185733 | MS.gene68824:CDS | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | - | chr6.1:80186252-80186271 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | chr6.1:80186784-80186803 | MS.gene68824:intron | 25.0% |
| AATAAAGAGAAAAGCGACAA+AGG | - | chr6.1:80186869-80186888 | None:intergenic | 30.0% | |
| ATTCAAATGCAAGAAATGGA+CGG | + | chr6.1:80186159-80186178 | MS.gene68824:CDS | 30.0% | |
| CAACAAAAATAATATCAGGG+TGG | - | chr6.1:80185703-80185722 | None:intergenic | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | + | chr6.1:80186155-80186174 | MS.gene68824:CDS | 30.0% | |
| TAATAAGCTCTTCTGTTGTT+GGG | - | chr6.1:80187373-80187392 | None:intergenic | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | - | chr6.1:80185818-80185837 | None:intergenic | 30.0% | |
| TATGAGTAATTAGAGGATGA+AGG | + | chr6.1:80187468-80187487 | MS.gene68824:intron | 30.0% | |
| TGAATTCCGTTTACCTATAT+TGG | + | chr6.1:80186644-80186663 | MS.gene68824:CDS | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | chr6.1:80185672-80185691 | MS.gene68824:intron | 30.0% | |
| TTAATAAGCTCTTCTGTTGT+TGG | - | chr6.1:80187374-80187393 | None:intergenic | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | chr6.1:80186819-80186838 | MS.gene68824:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | chr6.1:80186728-80186747 | MS.gene68824:CDS | 30.0% |
| !! | ACTTTTAACCGACTTTTTGA+TGG | + | chr6.1:80187866-80187885 | MS.gene68824:CDS | 30.0% |
| !! | AGAAAACTGTTTCTGTTACA+AGG | + | chr6.1:80187609-80187628 | MS.gene68824:intron | 30.0% |
| !! | ATGAAGAGTGTTTGAAATGT+GGG | + | chr6.1:80186697-80186716 | MS.gene68824:CDS | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | + | chr6.1:80186020-80186039 | MS.gene68824:intron | 30.0% |
| !! | TATGAAGAGTGTTTGAAATG+TGG | + | chr6.1:80186696-80186715 | MS.gene68824:CDS | 30.0% |
| !! | TGATGTTTCGTTTTTATGTC+TGG | + | chr6.1:80187661-80187680 | MS.gene68824:intron | 30.0% |
| !! | TTGACATTTTTATTGGTGTC+AGG | + | chr6.1:80187824-80187843 | MS.gene68824:intron | 30.0% |
| !!! | TGACATTTTTATTGGTGTCA+GGG | + | chr6.1:80187825-80187844 | MS.gene68824:intron | 30.0% |
| AACACTCTTCATATGTAGCA+TGG | - | chr6.1:80186689-80186708 | None:intergenic | 35.0% | |
| ACAGTCCTTGATTTCTTGAA+GGG | + | chr6.1:80187791-80187810 | MS.gene68824:intron | 35.0% | |
| AGCTGAAACGTAGTGAAATA+AGG | - | chr6.1:80187415-80187434 | None:intergenic | 35.0% | |
| AGTTACCCTTCAAGAAATCA+AGG | - | chr6.1:80187799-80187818 | None:intergenic | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | chr6.1:80185430-80185449 | None:intergenic | 35.0% | |
| CACTGTATCACTAAAACATG+CGG | - | chr6.1:80185865-80185884 | None:intergenic | 35.0% | |
| CTTACAAGCCATCAAAAAGT+CGG | - | chr6.1:80187877-80187896 | None:intergenic | 35.0% | |
| GGGAGCTTAAATTTGTAAAC+AGG | - | chr6.1:80187344-80187363 | None:intergenic | 35.0% | |
| TACAGTCCTTGATTTCTTGA+AGG | + | chr6.1:80187790-80187809 | MS.gene68824:intron | 35.0% | |
| TCATGGCCAATATAGGTAAA+CGG | - | chr6.1:80186653-80186672 | None:intergenic | 35.0% | |
| TCTGTTACAAGGCTTGTATT+TGG | + | chr6.1:80187620-80187639 | MS.gene68824:intron | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | chr6.1:80186744-80186763 | None:intergenic | 35.0% | |
| TGCTGTAATGATACTGTACT+TGG | + | chr6.1:80187124-80187143 | MS.gene68824:intron | 35.0% | |
| TTCAAATGCAAGAAATGGAC+GGG | + | chr6.1:80186160-80186179 | MS.gene68824:CDS | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | chr6.1:80186004-80186023 | None:intergenic | 35.0% |
| ! | AACACTAATAGTGGCATTGA+CGG | - | chr6.1:80187561-80187580 | None:intergenic | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | chr6.1:80185524-80185543 | MS.gene68824:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | chr6.1:80186007-80186026 | MS.gene68824:intron | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | chr6.1:80187179-80187198 | None:intergenic | 35.0% |
| ! | TCTTGTTTCCTAAGACTCTT+AGG | + | chr6.1:80187058-80187077 | MS.gene68824:intron | 35.0% |
| ! | TGTGTCGATAACACTAATAG+TGG | - | chr6.1:80187570-80187589 | None:intergenic | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | chr6.1:80185623-80185642 | MS.gene68824:intron | 35.0% |
| !! | ATTGTTTTATCTATCCCCTG+CGG | + | chr6.1:80187713-80187732 | MS.gene68824:intron | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | chr6.1:80186743-80186762 | MS.gene68824:CDS | 35.0% |
| !!! | TAAGAGGTTTTGGTTTGGTT+TGG | + | chr6.1:80187082-80187101 | MS.gene68824:intron | 35.0% |
| AAAGTTAGAGCTAGAGCTAC+TGG | + | chr6.1:80187251-80187270 | MS.gene68824:intron | 40.0% | |
| AAGTTAGAGCTAGAGCTACT+GGG | + | chr6.1:80187252-80187271 | MS.gene68824:intron | 40.0% | |
| AATGCGGACTTTAGCACATA+CGG | + | chr6.1:80187935-80187954 | MS.gene68824:CDS | 40.0% | |
| AGCTTATTAAAGCGACTGCA+GGG | + | chr6.1:80187384-80187403 | MS.gene68824:intron | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | - | chr6.1:80185978-80185997 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | + | chr6.1:80186134-80186153 | MS.gene68824:CDS | 40.0% | |
| CCAAGCATGATGAATGATTG+AGG | - | chr6.1:80187018-80187037 | None:intergenic | 40.0% | |
| CCTCAATCATTCATCATGCT+TGG | + | chr6.1:80187015-80187034 | MS.gene68824:intron | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | chr6.1:80186616-80186635 | MS.gene68824:CDS | 40.0% | |
| CGATCATGTGTGACTTTAGA+TGG | - | chr6.1:80185526-80185545 | None:intergenic | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | chr6.1:80185722-80185741 | MS.gene68824:CDS | 40.0% | |
| GAGAACCCAACAACCTAAAA+GGG | - | chr6.1:80187295-80187314 | None:intergenic | 40.0% | |
| GTAGCAAGAAGGATCATTTG+AGG | - | chr6.1:80185807-80185826 | None:intergenic | 40.0% | |
| TGAGAACCCAACAACCTAAA+AGG | - | chr6.1:80187296-80187315 | None:intergenic | 40.0% | |
| TTACGTGCATTCAACTTACG+TGG | - | chr6.1:80186332-80186351 | None:intergenic | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | chr6.1:80186565-80186584 | MS.gene68824:CDS | 40.0% | |
| TTGTTGGGTTCTCATCATCT+CGG | + | chr6.1:80187302-80187321 | MS.gene68824:intron | 40.0% | |
| ! | AATGCACGTAACTTGCATGT+TGG | + | chr6.1:80186341-80186360 | MS.gene68824:intron | 40.0% |
| ! | ACTCTTAGGCTAAGAGGTTT+TGG | + | chr6.1:80187072-80187091 | MS.gene68824:intron | 40.0% |
| ! | AGAGTGTTTGAAATGTGGGA+TGG | + | chr6.1:80186701-80186720 | MS.gene68824:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | - | chr6.1:80186061-80186080 | None:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | chr6.1:80186670-80186689 | None:intergenic | 40.0% |
| ! | TGTTTGAAATGTGGGATGGA+TGG | + | chr6.1:80186705-80186724 | MS.gene68824:CDS | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | chr6.1:80186732-80186751 | MS.gene68824:CDS | 40.0% |
| !! | TTTTGATGGCTTGTAAGACC+TGG | + | chr6.1:80187880-80187899 | MS.gene68824:CDS | 40.0% |
| !!! | TAGGCTAAGAGGTTTTGGTT+TGG | + | chr6.1:80187077-80187096 | MS.gene68824:intron | 40.0% |
| AACAACCTAAAAGGGCCAGT+CGG | - | chr6.1:80187287-80187306 | None:intergenic | 45.0% | |
| AAGCTCTTCTGTTGTTGGGT+TGG | - | chr6.1:80187369-80187388 | None:intergenic | 45.0% | |
| AGAAGACAATGCAAACCGCA+GGG | - | chr6.1:80187731-80187750 | None:intergenic | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | chr6.1:80185727-80185746 | MS.gene68824:CDS | 45.0% | |
| AGCTCTTCTGTTGTTGGGTT+GGG | - | chr6.1:80187368-80187387 | None:intergenic | 45.0% | |
| ATGCGGACTTTAGCACATAC+GGG | + | chr6.1:80187936-80187955 | MS.gene68824:CDS | 45.0% | |
| ATGTCAATGGAAGTGACTGC+AGG | + | chr6.1:80186033-80186052 | MS.gene68824:CDS | 45.0% | |
| ATGTGCTAAAGTCCGCATTC+TGG | - | chr6.1:80187934-80187953 | None:intergenic | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | + | chr6.1:80185894-80185913 | MS.gene68824:intron | 45.0% | |
| CCTAAGACTCTTAGGCTAAG+AGG | + | chr6.1:80187066-80187085 | MS.gene68824:intron | 45.0% | |
| CCTCTTAGCCTAAGAGTCTT+AGG | - | chr6.1:80187069-80187088 | None:intergenic | 45.0% | |
| CTGGATTGCTCAGCTGAATT+GGG | + | chr6.1:80187899-80187918 | MS.gene68824:CDS | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | + | chr6.1:80185890-80185909 | MS.gene68824:CDS | 45.0% | |
| GAGCTTATTAAAGCGACTGC+AGG | + | chr6.1:80187383-80187402 | MS.gene68824:intron | 45.0% | |
| TCAGCTGAATTGGGATCTGT+TGG | + | chr6.1:80187908-80187927 | MS.gene68824:CDS | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | chr6.1:80186660-80186679 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | chr6.1:80186566-80186585 | MS.gene68824:CDS | 45.0% | |
| TGTCAGGGAAACATTGCTGA+AGG | + | chr6.1:80187840-80187859 | MS.gene68824:intron | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | + | chr6.1:80185917-80185936 | MS.gene68824:intron | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | + | chr6.1:80186056-80186075 | MS.gene68824:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | + | chr6.1:80185918-80185937 | MS.gene68824:intron | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | + | chr6.1:80185990-80186009 | MS.gene68824:intron | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | - | chr6.1:80185926-80185945 | None:intergenic | 45.0% |
| !!! | ACTGGCCCTTTTAGGTTGTT+GGG | + | chr6.1:80187287-80187306 | MS.gene68824:intron | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | + | chr6.1:80185924-80185943 | MS.gene68824:intron | 45.0% |
| AACAGGCAAGAAGAGACAGC+CGG | + | chr6.1:80185941-80185960 | MS.gene68824:intron | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | chr6.1:80186572-80186591 | MS.gene68824:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | chr6.1:80186581-80186600 | MS.gene68824:CDS | 50.0% | |
| ACTGGGAAAGTTGTTCCGAC+TGG | + | chr6.1:80187269-80187288 | MS.gene68824:intron | 50.0% | |
| ACTTTAGCACATACGGGGAC+TGG | + | chr6.1:80187942-80187961 | MS.gene68824:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.1:80186940-80186959 | MS.gene68824:intron | 50.0% | |
| CCAATTCAGCTGAGCAATCC+AGG | - | chr6.1:80187901-80187920 | None:intergenic | 50.0% | |
| CCTGGATTGCTCAGCTGAAT+TGG | + | chr6.1:80187898-80187917 | MS.gene68824:CDS | 50.0% | |
| GAAGACAATGCAAACCGCAG+GGG | - | chr6.1:80187730-80187749 | None:intergenic | 50.0% | |
| GAGAAGACAATGCAAACCGC+AGG | - | chr6.1:80187732-80187751 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr6.1:80186939-80186958 | MS.gene68824:intron | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | + | chr6.1:80186078-80186097 | MS.gene68824:CDS | 50.0% | |
| GCAGGCGCCTTGAAAAACTT+TGG | + | chr6.1:80186051-80186070 | MS.gene68824:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | + | chr6.1:80185893-80185912 | MS.gene68824:intron | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | chr6.1:80185731-80185750 | MS.gene68824:CDS | 50.0% | |
| TGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.1:80186938-80186957 | MS.gene68824:intron | 50.0% | |
| TGCGGACTTTAGCACATACG+GGG | + | chr6.1:80187937-80187956 | MS.gene68824:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | chr6.1:80185765-80185784 | MS.gene68824:CDS | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | chr6.1:80185963-80185982 | None:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | - | chr6.1:80185897-80185916 | None:intergenic | 50.0% |
| !! | CTTCTGTTGTTGGGTTGGGA+GGG | - | chr6.1:80187364-80187383 | None:intergenic | 50.0% |
| !! | TCTTCTGTTGTTGGGTTGGG+AGG | - | chr6.1:80187365-80187384 | None:intergenic | 50.0% |
| !! | TTGTTCCGACTGGCCCTTTT+AGG | + | chr6.1:80187279-80187298 | MS.gene68824:intron | 50.0% |
| !!! | GACTGGCCCTTTTAGGTTGT+TGG | + | chr6.1:80187286-80187305 | MS.gene68824:intron | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | chr6.1:80185942-80185961 | MS.gene68824:intron | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | chr6.1:80186600-80186619 | MS.gene68824:CDS | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | + | chr6.1:80186942-80186961 | MS.gene68824:intron | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | chr6.1:80185747-80185766 | MS.gene68824:CDS | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | chr6.1:80185732-80185751 | MS.gene68824:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | chr6.1:80185960-80185979 | MS.gene68824:intron | 55.0% | |
| GAGAGAGAGAGAGAGAGGGA+GGG | + | chr6.1:80186943-80186962 | MS.gene68824:intron | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | chr6.1:80185754-80185773 | MS.gene68824:CDS | 55.0% | |
| GGGATCTGTTGGCCAGAATG+CGG | + | chr6.1:80187919-80187938 | MS.gene68824:CDS | 55.0% | |
| GGGTTCTCATCATCTCGGTG+TGG | + | chr6.1:80187307-80187326 | MS.gene68824:intron | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | chr6.1:80186577-80186596 | MS.gene68824:CDS | 55.0% | |
| !! | ATACGGGGACTGGCTTCTAC+GGG | + | chr6.1:80187952-80187971 | MS.gene68824:CDS | 55.0% |
| !! | CATACGGGGACTGGCTTCTA+CGG | + | chr6.1:80187951-80187970 | MS.gene68824:CDS | 55.0% |
| AGAGAGAGAGAGAGGGAGGG+AGG | + | chr6.1:80186974-80186993 | MS.gene68824:intron | 60.0% | |
| GAGAGAGAGAGAGGGAGGGA+GGG | + | chr6.1:80186975-80186994 | MS.gene68824:intron | 60.0% | |
| GATGGAGAGGACGGCGAATG+AGG | + | chr6.1:80186590-80186609 | MS.gene68824:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 80185418 | 80187977 | 80185418 | ID=MS.gene68824 |
| chr6.1 | mRNA | 80185418 | 80187977 | 80185418 | ID=MS.gene68824.t1;Parent=MS.gene68824 |
| chr6.1 | exon | 80185418 | 80185436 | 80185418 | ID=MS.gene68824.t1.exon1;Parent=MS.gene68824.t1 |
| chr6.1 | CDS | 80185418 | 80185436 | 80185418 | ID=cds.MS.gene68824.t1;Parent=MS.gene68824.t1 |
| chr6.1 | exon | 80185694 | 80185911 | 80185694 | ID=MS.gene68824.t1.exon2;Parent=MS.gene68824.t1 |
| chr6.1 | CDS | 80185694 | 80185911 | 80185694 | ID=cds.MS.gene68824.t1;Parent=MS.gene68824.t1 |
| chr6.1 | exon | 80186027 | 80186181 | 80186027 | ID=MS.gene68824.t1.exon3;Parent=MS.gene68824.t1 |
| chr6.1 | CDS | 80186027 | 80186181 | 80186027 | ID=cds.MS.gene68824.t1;Parent=MS.gene68824.t1 |
| chr6.1 | exon | 80186563 | 80186764 | 80186563 | ID=MS.gene68824.t1.exon4;Parent=MS.gene68824.t1 |
| chr6.1 | CDS | 80186563 | 80186764 | 80186563 | ID=cds.MS.gene68824.t1;Parent=MS.gene68824.t1 |
| chr6.1 | exon | 80187846 | 80187977 | 80187846 | ID=MS.gene68824.t1.exon5;Parent=MS.gene68824.t1 |
| chr6.1 | CDS | 80187846 | 80187977 | 80187846 | ID=cds.MS.gene68824.t1;Parent=MS.gene68824.t1 |
| Gene Sequence |
| Protein sequence |
