Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051919.t1 | GAU17568.1 | 63.8 | 334 | 106 | 5 | 1 | 330 | 404 | 726 | 2.10E-107 | 399.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051919.t1 | Q9FPT1 | 45.4 | 130 | 68 | 3 | 10 | 138 | 56 | 183 | 6.7e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051919.t1 | A0A392MFG0 | 64.7 | 334 | 103 | 5 | 1 | 330 | 4 | 326 | 1.4e-110 | 409.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051919 | MS.gene23045 | 0.979232 | 1.61E-147 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051919.t1 | MTR_7g107200 | 45.067 | 375 | 160 | 5 | 1 | 329 | 1 | 375 | 4.23e-107 | 318 |
| MS.gene051919.t1 | MTR_1g042160 | 50.599 | 334 | 133 | 8 | 1 | 328 | 1 | 308 | 5.87e-102 | 302 |
| MS.gene051919.t1 | MTR_7g107160 | 53.235 | 340 | 120 | 12 | 9 | 331 | 129 | 446 | 7.51e-100 | 301 |
| MS.gene051919.t1 | MTR_7g107160 | 50.388 | 129 | 44 | 3 | 66 | 174 | 1 | 129 | 8.64e-31 | 121 |
| MS.gene051919.t1 | MTR_8g011730 | 36.415 | 357 | 175 | 9 | 9 | 329 | 13 | 353 | 1.33e-62 | 203 |
| MS.gene051919.t1 | MTR_7g107170 | 53.416 | 161 | 67 | 1 | 168 | 328 | 111 | 263 | 4.90e-48 | 162 |
| MS.gene051919.t1 | MTR_7g107170 | 73.563 | 87 | 23 | 0 | 233 | 319 | 1 | 87 | 3.60e-32 | 121 |
| MS.gene051919.t1 | MTR_2g034780 | 37.427 | 171 | 100 | 3 | 154 | 323 | 97 | 261 | 2.94e-28 | 110 |
| MS.gene051919.t1 | MTR_3g079840 | 39.437 | 142 | 80 | 4 | 1 | 138 | 45 | 184 | 2.53e-25 | 107 |
| MS.gene051919.t1 | MTR_3g079840 | 39.437 | 142 | 80 | 4 | 1 | 138 | 44 | 183 | 2.75e-25 | 107 |
| MS.gene051919.t1 | MTR_5g086700 | 37.500 | 136 | 82 | 3 | 4 | 138 | 55 | 188 | 8.97e-25 | 105 |
| MS.gene051919.t1 | MTR_5g086700 | 37.500 | 136 | 82 | 3 | 4 | 138 | 55 | 188 | 9.05e-25 | 105 |
| MS.gene051919.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 58 | 184 | 1.73e-23 | 102 |
| MS.gene051919.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 59 | 185 | 1.81e-23 | 101 |
| MS.gene051919.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 57 | 183 | 1.84e-23 | 101 |
| MS.gene051919.t1 | MTR_5g091450 | 35.714 | 126 | 79 | 2 | 10 | 134 | 33 | 157 | 4.05e-22 | 97.8 |
| MS.gene051919.t1 | MTR_5g091180 | 33.557 | 149 | 92 | 4 | 1 | 145 | 34 | 179 | 3.26e-19 | 89.0 |
| MS.gene051919.t1 | MTR_5g091550 | 33.858 | 127 | 81 | 3 | 9 | 134 | 18 | 142 | 2.43e-15 | 77.0 |
| MS.gene051919.t1 | MTR_5g091550 | 33.858 | 127 | 81 | 3 | 9 | 134 | 18 | 142 | 2.61e-15 | 77.0 |
| MS.gene051919.t1 | MTR_3g106700 | 35.461 | 141 | 81 | 4 | 10 | 140 | 406 | 546 | 7.33e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051919.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 44 | 183 | 2.41e-26 | 110 |
| MS.gene051919.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 43 | 182 | 2.44e-26 | 110 |
| MS.gene051919.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 44 | 183 | 2.78e-26 | 110 |
| MS.gene051919.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 55 | 182 | 1.39e-24 | 105 |
| MS.gene051919.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 55 | 182 | 1.39e-24 | 105 |
| MS.gene051919.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 54 | 181 | 1.44e-24 | 105 |
| MS.gene051919.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 54 | 181 | 1.44e-24 | 105 |
| MS.gene051919.t1 | AT3G58340 | 25.086 | 291 | 170 | 9 | 5 | 269 | 3 | 271 | 5.14e-16 | 77.8 |
| MS.gene051919.t1 | AT3G58340 | 24.150 | 294 | 179 | 9 | 5 | 269 | 3 | 281 | 4.27e-15 | 75.5 |
| MS.gene051919.t1 | AT3G58220 | 25.118 | 211 | 144 | 6 | 11 | 218 | 13 | 212 | 5.13e-14 | 72.0 |
| MS.gene051919.t1 | AT3G58360 | 24.068 | 295 | 194 | 8 | 9 | 294 | 7 | 280 | 2.61e-13 | 69.7 |
| MS.gene051919.t1 | AT3G58370 | 27.477 | 222 | 136 | 9 | 1 | 218 | 1 | 201 | 5.14e-13 | 68.9 |
| MS.gene051919.t1 | AT3G58220 | 21.649 | 291 | 183 | 6 | 11 | 259 | 13 | 300 | 1.73e-12 | 67.8 |
| MS.gene051919.t1 | AT2G25320 | 33.544 | 158 | 94 | 5 | 10 | 157 | 404 | 560 | 6.25e-12 | 67.4 |
| MS.gene051919.t1 | AT2G25320 | 33.544 | 158 | 94 | 5 | 10 | 157 | 405 | 561 | 6.25e-12 | 67.4 |
| MS.gene051919.t1 | AT3G58220 | 30.469 | 128 | 85 | 3 | 11 | 135 | 13 | 139 | 6.56e-12 | 66.6 |
| MS.gene051919.t1 | AT3G58220 | 28.986 | 138 | 96 | 2 | 11 | 147 | 13 | 149 | 1.12e-11 | 64.7 |
| MS.gene051919.t1 | AT3G58220 | 28.571 | 154 | 108 | 2 | 11 | 163 | 13 | 165 | 1.27e-11 | 65.5 |
| MS.gene051919.t1 | AT3G58240 | 24.920 | 313 | 207 | 11 | 8 | 302 | 6 | 308 | 1.37e-11 | 65.1 |
| MS.gene051919.t1 | AT2G25320 | 32.278 | 158 | 96 | 4 | 10 | 157 | 405 | 561 | 1.56e-11 | 65.9 |
| MS.gene051919.t1 | AT3G27040 | 27.737 | 137 | 97 | 2 | 7 | 142 | 6 | 141 | 4.12e-11 | 63.2 |
| MS.gene051919.t1 | AT3G58260 | 24.333 | 300 | 186 | 10 | 11 | 303 | 9 | 274 | 8.43e-11 | 62.8 |
| MS.gene051919.t1 | AT4G09770 | 29.787 | 141 | 90 | 5 | 4 | 138 | 5 | 142 | 9.63e-11 | 61.6 |
Find 65 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCCTTCTTCTATTTC+TGG | 0.076592 | 7.1:-6017145 | None:intergenic |
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 7.1:+6016964 | MS.gene051919:CDS |
| TTTAGAAAAGAAAAGTTATT+TGG | 0.216214 | 7.1:+6017465 | MS.gene051919:CDS |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 7.1:-6017418 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.229550 | 7.1:-6017022 | None:intergenic |
| CCAAAGTCTCGACCACATTT+TGG | 0.231606 | 7.1:-6017168 | None:intergenic |
| CTCTCCCCTTTCTTGTCTTA+AGG | 0.269117 | 7.1:-6017342 | None:intergenic |
| GAACTTCTCTCACTTGAATA+AGG | 0.276609 | 7.1:+6015639 | MS.gene051919:CDS |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 7.1:+6016971 | MS.gene051919:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 7.1:-6017221 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 7.1:+6017040 | MS.gene051919:CDS |
| CCTTCTTCTATTTCTGGCTC+TGG | 0.363990 | 7.1:-6017139 | None:intergenic |
| GGATGATTTGTCTGTATCAA+TGG | 0.368177 | 7.1:+6015797 | MS.gene051919:intron |
| TACTCTGAGCCTTTCATCCT+TGG | 0.374548 | 7.1:+6015673 | MS.gene051919:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.376541 | 7.1:+6017168 | MS.gene051919:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 7.1:+6016965 | MS.gene051919:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 7.1:+6017588 | MS.gene051919:CDS |
| GATGATTTGTCTGTATCAAT+GGG | 0.407748 | 7.1:+6015798 | MS.gene051919:CDS |
| GGAATGGGCATTCACTGCTC+TGG | 0.408219 | 7.1:+6017303 | MS.gene051919:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 7.1:+6016955 | MS.gene051919:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.417770 | 7.1:+6017288 | MS.gene051919:CDS |
| GTACACTGCTAATATGTCTC+AGG | 0.423152 | 7.1:+6015864 | MS.gene051919:CDS |
| TCTCTCACTTGAATAAGGTT+AGG | 0.439144 | 7.1:+6015644 | MS.gene051919:CDS |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 7.1:+6017177 | MS.gene051919:CDS |
| TATTTCCTTAAGACAAGAAA+GGG | 0.449111 | 7.1:+6017337 | MS.gene051919:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 7.1:-6017112 | None:intergenic |
| GGTAGCTCTAGAGTTGGAAT+TGG | 0.453675 | 7.1:+6017525 | MS.gene051919:CDS |
| AAGTTATTTGGAGAAATTGA+AGG | 0.459258 | 7.1:+6017477 | MS.gene051919:CDS |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 7.1:+6017419 | MS.gene051919:CDS |
| GTTGGAATTGGAAAGGCTAA+TGG | 0.469386 | 7.1:+6017537 | MS.gene051919:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7.1:+6017631 | MS.gene051919:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.484168 | 7.1:+6017336 | MS.gene051919:CDS |
| TCTGAGCCTTTCATCCTTGG+CGG | 0.492833 | 7.1:+6015676 | MS.gene051919:CDS |
| GAGCTTCTTGATCCTGAAAG+AGG | 0.499293 | 7.1:+6017010 | MS.gene051919:CDS |
| TCATCCTTGGCGGCTATCCA+TGG | 0.501161 | 7.1:+6015686 | MS.gene051919:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 7.1:+6017287 | MS.gene051919:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 7.1:+6017178 | MS.gene051919:CDS |
| ACCAGCAAGACACTTACAAA+AGG | 0.526631 | 7.1:+6015937 | MS.gene051919:CDS |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.535745 | 7.1:+6017483 | MS.gene051919:CDS |
| AGCTTCTTGATCCTGAAAGA+GGG | 0.537917 | 7.1:+6017011 | MS.gene051919:CDS |
| GAATGGGCATTCACTGCTCT+GGG | 0.540430 | 7.1:+6017304 | MS.gene051919:CDS |
| TCCTGACACAAAATAAGTGA+AGG | 0.543719 | 7.1:-6017259 | None:intergenic |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 7.1:-6017229 | None:intergenic |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 7.1:+6017024 | MS.gene051919:CDS |
| TAATGTGGTAGCTCTAGAGT+TGG | 0.557259 | 7.1:+6017519 | MS.gene051919:CDS |
| ATTGGAAAGGCTAATGGTAA+AGG | 0.559107 | 7.1:+6017543 | MS.gene051919:CDS |
| CCAGAGCCAGAAATAGAAGA+AGG | 0.562182 | 7.1:+6017139 | MS.gene051919:CDS |
| GGATAGCCGCCAAGGATGAA+AGG | 0.566403 | 7.1:-6015682 | None:intergenic |
| CTCTAGAGTTGGAATTGGAA+AGG | 0.571519 | 7.1:+6017530 | MS.gene051919:CDS |
| TCTAAAGCAGATTGAACACA+AGG | 0.573483 | 7.1:-6017448 | None:intergenic |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 7.1:+6015608 | MS.gene051919:CDS |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 7.1:+6017184 | MS.gene051919:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 7.1:+6017219 | MS.gene051919:CDS |
| CATACCATGGATAGCCGCCA+AGG | 0.606316 | 7.1:-6015690 | None:intergenic |
| CTGCTAATATGTCTCAGGGA+TGG | 0.608102 | 7.1:+6015869 | MS.gene051919:CDS |
| CCTGACACAAAATAAGTGAA+GGG | 0.611997 | 7.1:-6017258 | None:intergenic |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 7.1:+6017591 | MS.gene051919:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.619666 | 7.1:+6017480 | MS.gene051919:CDS |
| ATTTCCTTAAGACAAGAAAG+GGG | 0.649496 | 7.1:+6017338 | MS.gene051919:CDS |
| TACACTGCTAATATGTCTCA+GGG | 0.650132 | 7.1:+6015865 | MS.gene051919:CDS |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 7.1:+6017198 | MS.gene051919:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 7.1:+6017116 | MS.gene051919:CDS |
| AGAAGGCCAACACCAAAATG+TGG | 0.670587 | 7.1:+6017156 | MS.gene051919:CDS |
| TGATTTGTCTGTATCAATGG+GGG | 0.682465 | 7.1:+6015800 | MS.gene051919:CDS |
| ATGATTTGTCTGTATCAATG+GGG | 0.692803 | 7.1:+6015799 | MS.gene051919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTATACTAATAA+TGG | + | chr7.1:6016240-6016259 | MS.gene051919:intron | 10.0% |
| !!! | ATTATTAGTATAACTTTTTT+TGG | - | chr7.1:6016241-6016260 | None:intergenic | 10.0% |
| !! | ATAAAGGAAAAATAAGAATT+TGG | + | chr7.1:6016779-6016798 | MS.gene051919:intron | 15.0% |
| !! | ATTACTAACAAACAAAATTT+CGG | - | chr7.1:6016863-6016882 | None:intergenic | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr7.1:6017384-6017403 | MS.gene051919:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr7.1:6016217-6016236 | None:intergenic | 15.0% |
| !! | TTTAGAAAAGAAAAGTTATT+TGG | + | chr7.1:6017465-6017484 | MS.gene051919:CDS | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr7.1:6016233-6016252 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr7.1:6016435-6016454 | None:intergenic | 20.0% |
| !! | ACATTAGAAGTTTAAAAAGT+CGG | - | chr7.1:6016555-6016574 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr7.1:6017421-6017440 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr7.1:6017383-6017402 | MS.gene051919:CDS | 20.0% |
| !! | TTCTAACTCTTTCTAATATT+GGG | - | chr7.1:6016306-6016325 | None:intergenic | 20.0% |
| !! | TTTCTAACTCTTTCTAATAT+TGG | - | chr7.1:6016307-6016326 | None:intergenic | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr7.1:6017419-6017438 | MS.gene051919:CDS | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | + | chr7.1:6016012-6016031 | MS.gene051919:intron | 20.0% |
| !!! | TCTAATGTGATTTTTTTGTT+GGG | + | chr7.1:6016567-6016586 | MS.gene051919:intron | 20.0% |
| !!! | TTCTAATGTGATTTTTTTGT+TGG | + | chr7.1:6016566-6016585 | MS.gene051919:intron | 20.0% |
| ! | AAGTTATTTGGAGAAATTGA+AGG | + | chr7.1:6017477-6017496 | MS.gene051919:CDS | 25.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr7.1:6016965-6016984 | MS.gene051919:CDS | 25.0% |
| ! | TATTTCCTTAAGACAAGAAA+GGG | + | chr7.1:6017337-6017356 | MS.gene051919:CDS | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr7.1:6016873-6016892 | MS.gene051919:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr7.1:6017336-6017355 | MS.gene051919:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.1:6015706-6015725 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr7.1:6015989-6016008 | MS.gene051919:intron | 25.0% |
| !!! | CTTTTTATTTTTCAGTCTCA+AGG | + | chr7.1:6016703-6016722 | MS.gene051919:intron | 25.0% |
| ACAATAGTTTCGTATCATGA+TGG | - | chr7.1:6015749-6015768 | None:intergenic | 30.0% | |
| ATTTCCTTAAGACAAGAAAG+GGG | + | chr7.1:6017338-6017357 | MS.gene051919:CDS | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | + | chr7.1:6016964-6016983 | MS.gene051919:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr7.1:6017387-6017406 | MS.gene051919:CDS | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | - | chr7.1:6016662-6016681 | None:intergenic | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | - | chr7.1:6016826-6016845 | None:intergenic | 30.0% | |
| TATTACTCACAGTAAGATTG+CGG | + | chr7.1:6016057-6016076 | MS.gene051919:intron | 30.0% | |
| TGTATTGTGTGTGAAATTTG+TGG | + | chr7.1:6016449-6016468 | MS.gene051919:intron | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | + | chr7.1:6017480-6017499 | MS.gene051919:CDS | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr7.1:6016947-6016966 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr7.1:6016542-6016561 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr7.1:6016971-6016990 | MS.gene051919:CDS | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | - | chr7.1:6016937-6016956 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | + | chr7.1:6015799-6015818 | MS.gene051919:CDS | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | + | chr7.1:6015798-6015817 | MS.gene051919:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr7.1:6017224-6017243 | None:intergenic | 30.0% |
| ! | TTGTAGATCACTGATTAAAG+AGG | - | chr7.1:6016135-6016154 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr7.1:6017618-6017637 | MS.gene051919:CDS | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr7.1:6016912-6016931 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr7.1:6015776-6015795 | MS.gene051919:intron | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr7.1:6017281-6017300 | MS.gene051919:CDS | 35.0% | |
| AGGTCAAAAAACAAGACTCA+GGG | - | chr7.1:6016181-6016200 | None:intergenic | 35.0% | |
| ATTACTCACAGTAAGATTGC+GGG | + | chr7.1:6016058-6016077 | MS.gene051919:intron | 35.0% | |
| ATTGGAAAGGCTAATGGTAA+AGG | + | chr7.1:6017543-6017562 | MS.gene051919:CDS | 35.0% | |
| CCTGACACAAAATAAGTGAA+GGG | - | chr7.1:6017261-6017280 | None:intergenic | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr7.1:6017116-6017135 | MS.gene051919:CDS | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr7.1:6017282-6017301 | MS.gene051919:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr7.1:6017232-6017251 | None:intergenic | 35.0% | |
| GAACTTCTCTCACTTGAATA+AGG | + | chr7.1:6015639-6015658 | MS.gene051919:CDS | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr7.1:6017504-6017523 | MS.gene051919:CDS | 35.0% | |
| TACACTGCTAATATGTCTCA+GGG | + | chr7.1:6015865-6015884 | MS.gene051919:CDS | 35.0% | |
| TAGGTCAAAAAACAAGACTC+AGG | - | chr7.1:6016182-6016201 | None:intergenic | 35.0% | |
| TCCTGACACAAAATAAGTGA+AGG | - | chr7.1:6017262-6017281 | None:intergenic | 35.0% | |
| TCTCTCACTTGAATAAGGTT+AGG | + | chr7.1:6015644-6015663 | MS.gene051919:CDS | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr7.1:6017024-6017043 | MS.gene051919:CDS | 35.0% | |
| TGCGCTCAACAAAATCATAA+AGG | + | chr7.1:6016763-6016782 | MS.gene051919:intron | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr7.1:6017025-6017044 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGAGCGCAAAACA+TGG | - | chr7.1:6016758-6016777 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr7.1:6016955-6016974 | MS.gene051919:CDS | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | + | chr7.1:6015797-6015816 | MS.gene051919:intron | 35.0% |
| ! | TCTAAAGCAGATTGAACACA+AGG | - | chr7.1:6017451-6017470 | None:intergenic | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | + | chr7.1:6015800-6015819 | MS.gene051919:CDS | 35.0% |
| !! | GGAAGAAGATTTTGAAGAGA+TGG | + | chr7.1:6017612-6017631 | MS.gene051919:CDS | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | + | chr7.1:6016374-6016393 | MS.gene051919:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | + | chr7.1:6016373-6016392 | MS.gene051919:intron | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | - | chr7.1:6016821-6016840 | None:intergenic | 40.0% | |
| ACCAGCAAGACACTTACAAA+AGG | + | chr7.1:6015937-6015956 | MS.gene051919:CDS | 40.0% | |
| AGCTTCTTGATCCTGAAAGA+GGG | + | chr7.1:6017011-6017030 | MS.gene051919:CDS | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr7.1:6017631-6017650 | MS.gene051919:CDS | 40.0% | |
| GAAACAAGAGACAGTGAACT+AGG | - | chr7.1:6016332-6016351 | None:intergenic | 40.0% | |
| GACTCAAACCCACGAAATTA+GGG | - | chr7.1:6016091-6016110 | None:intergenic | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr7.1:6017219-6017238 | MS.gene051919:CDS | 40.0% | |
| GGTCTTCTTCATCATGACAA+CGG | - | chr7.1:6016114-6016133 | None:intergenic | 40.0% | |
| GTACACTGCTAATATGTCTC+AGG | + | chr7.1:6015864-6015883 | MS.gene051919:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr7.1:6017178-6017197 | MS.gene051919:CDS | 40.0% | |
| GTCTTCTTCATCATGACAAC+GGG | - | chr7.1:6016113-6016132 | None:intergenic | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr7.1:6017040-6017059 | MS.gene051919:CDS | 40.0% | |
| GTTCAAGTCCCTAATTTCGT+GGG | + | chr7.1:6016080-6016099 | MS.gene051919:intron | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr7.1:6017115-6017134 | None:intergenic | 40.0% | |
| GTTGGAATTGGAAAGGCTAA+TGG | + | chr7.1:6017537-6017556 | MS.gene051919:CDS | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | + | chr7.1:6017483-6017502 | MS.gene051919:CDS | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | - | chr7.1:6015941-6015960 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr7.1:6017184-6017203 | MS.gene051919:CDS | 40.0% |
| ! | GTTCTATGTTGCAAAGGTAC+AGG | - | chr7.1:6016656-6016675 | None:intergenic | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr7.1:6016201-6016220 | None:intergenic | 40.0% |
| !! | CTCTAGAGTTGGAATTGGAA+AGG | + | chr7.1:6017530-6017549 | MS.gene051919:CDS | 40.0% |
| !! | TAATGTGGTAGCTCTAGAGT+TGG | + | chr7.1:6017519-6017538 | MS.gene051919:CDS | 40.0% |
| !! | TGTTGGCCTTCTTCTATTTC+TGG | - | chr7.1:6017148-6017167 | None:intergenic | 40.0% |
| !!! | CCCTTCACTTATTTTGTGTC+AGG | + | chr7.1:6017258-6017277 | MS.gene051919:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr7.1:6017287-6017306 | MS.gene051919:CDS | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr7.1:6017288-6017307 | MS.gene051919:CDS | 45.0% | |
| AGAAGGCCAACACCAAAATG+TGG | + | chr7.1:6017156-6017175 | MS.gene051919:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr7.1:6017168-6017187 | MS.gene051919:CDS | 45.0% | |
| CCAGAGCCAGAAATAGAAGA+AGG | + | chr7.1:6017139-6017158 | MS.gene051919:CDS | 45.0% | |
| CTCTCCCCTTTCTTGTCTTA+AGG | - | chr7.1:6017345-6017364 | None:intergenic | 45.0% | |
| CTGCTAATATGTCTCAGGGA+TGG | + | chr7.1:6015869-6015888 | MS.gene051919:CDS | 45.0% | |
| GAAGGAGGCGGAAAAACTAA+GGG | + | chr7.1:6017495-6017514 | MS.gene051919:CDS | 45.0% | |
| GAGCTTCTTGATCCTGAAAG+AGG | + | chr7.1:6017010-6017029 | MS.gene051919:CDS | 45.0% | |
| GGACTCAAACCCACGAAATT+AGG | - | chr7.1:6016092-6016111 | None:intergenic | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr7.1:6017198-6017217 | MS.gene051919:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr7.1:6017177-6017196 | MS.gene051919:CDS | 45.0% | |
| GGTTCAAGTCCCTAATTTCG+TGG | + | chr7.1:6016079-6016098 | MS.gene051919:intron | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr7.1:6017275-6017294 | MS.gene051919:CDS | 45.0% | |
| TACTCTGAGCCTTTCATCCT+TGG | + | chr7.1:6015673-6015692 | MS.gene051919:CDS | 45.0% | |
| TGAAGGAGGCGGAAAAACTA+AGG | + | chr7.1:6017494-6017513 | MS.gene051919:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr7.1:6017588-6017607 | MS.gene051919:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr7.1:6017171-6017190 | None:intergenic | 45.0% |
| !! | CCTTCTTCTATTTCTGGCTC+TGG | - | chr7.1:6017142-6017161 | None:intergenic | 45.0% |
| !! | GGTAGCTCTAGAGTTGGAAT+TGG | + | chr7.1:6017525-6017544 | MS.gene051919:CDS | 45.0% |
| !! | TCTCGACCACATTTTGGTGT+TGG | - | chr7.1:6017165-6017184 | None:intergenic | 45.0% |
| CGAGCGATGAGAAGTTCACA+TGG | + | chr7.1:6015608-6015627 | MS.gene051919:CDS | 50.0% | |
| GAATGGGCATTCACTGCTCT+GGG | + | chr7.1:6017304-6017323 | MS.gene051919:CDS | 50.0% | |
| GTGTGTAACCCATGCTTCAG+AGG | - | chr7.1:6016385-6016404 | None:intergenic | 50.0% | |
| GTTACACACGTGTACGCGTA+CGG | + | chr7.1:6016396-6016415 | MS.gene051919:intron | 50.0% | |
| TCTGAGCCTTTCATCCTTGG+CGG | + | chr7.1:6015676-6015695 | MS.gene051919:CDS | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | + | chr7.1:6015805-6015824 | MS.gene051919:CDS | 50.0% | |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr7.1:6017591-6017610 | MS.gene051919:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr7.1:6015693-6015712 | None:intergenic | 55.0% | |
| GGAATGGGCATTCACTGCTC+TGG | + | chr7.1:6017303-6017322 | MS.gene051919:CDS | 55.0% | |
| GGATAGCCGCCAAGGATGAA+AGG | - | chr7.1:6015685-6015704 | None:intergenic | 55.0% | |
| GTGTACGCGTACGGTACTTG+TGG | + | chr7.1:6016405-6016424 | MS.gene051919:intron | 55.0% | |
| TCATCCTTGGCGGCTATCCA+TGG | + | chr7.1:6015686-6015705 | MS.gene051919:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6015592 | 6017669 | 6015592 | ID=MS.gene051919 |
| chr7.1 | mRNA | 6015592 | 6017669 | 6015592 | ID=MS.gene051919.t1;Parent=MS.gene051919 |
| chr7.1 | exon | 6015592 | 6015707 | 6015592 | ID=MS.gene051919.t1.exon1;Parent=MS.gene051919.t1 |
| chr7.1 | CDS | 6015592 | 6015707 | 6015592 | ID=cds.MS.gene051919.t1;Parent=MS.gene051919.t1 |
| chr7.1 | exon | 6015798 | 6015958 | 6015798 | ID=MS.gene051919.t1.exon2;Parent=MS.gene051919.t1 |
| chr7.1 | CDS | 6015798 | 6015958 | 6015798 | ID=cds.MS.gene051919.t1;Parent=MS.gene051919.t1 |
| chr7.1 | exon | 6016948 | 6017669 | 6016948 | ID=MS.gene051919.t1.exon3;Parent=MS.gene051919.t1 |
| chr7.1 | CDS | 6016948 | 6017669 | 6016948 | ID=cds.MS.gene051919.t1;Parent=MS.gene051919.t1 |
| Gene Sequence |
| Protein sequence |
